Fix for the broken build on master.
* gnu/packages/fonts.scm (font-amiri): Update to 1.000.
[arguments](%standard-phases): Add 'patch-source' to hard-code version.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu/packages/web.scm (wabt): Update to 1.0.32.
[source]: Fetch sources recursively; delete bundled gtest sources.
[arguments]: Do build and run tests; add phase to set CC variable, and another
phase to delete a broken test.
[native-inputs]: Add python and googletest.
[inputs]: Remove.
The timezone database should not be depended on by packages, but rather found at
runtime in the environment. Otherwise, this package will eventually report the
incorrect time, because time zones change regularly.
This reverts commit 99c1c7a30c.
This fixes CVE-2022-39316, CVE-2022-39317, CVE-2022-39318, CVE-2022-39319,
CVE-2022-39320, CVE-2022-41877, CVE-2022-39347, CVE-2022-39282,
CVE-2022-39283, CVE-2021-41159 and CVE-2021-41160.
* gnu/packages/rdesktop.scm (freerdp): Update to 2.2.0.
[arguments]: Use gexps. Do not set DOCBOOKXSL_DIR in #:configureflags.
This fixes CVE-2022-39316, CVE-2022-39317, CVE-2022-39318, CVE-2022-39319,
CVE-2022-39320, CVE-2022-41877, CVE-2022-39347, CVE-2022-39282,
CVE-2022-39283, CVE-2021-41159 and CVE-2021-41160.
* gnu/packages/rdesktop.scm (freerdp): Update to 2.2.0.
[arguments]: Use gexps. Do not set DOCBOOKXSL_DIR in #:configureflags.
* gnu/packages/bioinformatics.scm (bppsuite): Update to 2.4.1.
[source]: Remove the commit and use the release version. Changed to the github
repo.
[arguments]: Remove the disabled parallel-build.
[inputs]: Use list.
[home-page]: Changed to github page.
* gnu/packages/bioinformatics.scm (bpp-popgen): Update to 2.4.1.
[source]: Remove the commit and use the release version. Changed to the github
repo.
[arguments]: Remove the disabled parallel-build.
[home-page]: Changed to new host Université Claude-Bernard Lyon 1.
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Replace build
phase 'python3.9-compatibility with 'python3.10-compatibility; patch for move
from "collections" to "collections.abc"; add well-meaning but potentially
reckless patch to remove overwrite error for __or__ and __ror__ methods;
adjust farmhash sources to build with GCC 11; do not use distutils.sysconfig.
abseil-cpp is not part of the native-inputs but of the inputs.
* gnu/packages/rpc.scm (grpc-1.16.1)[native-inputs]: Only replace protobuf.
[inputs]: Replace abseil-cpp.
* gnu/packages/bioinformatics.scm (bpp-phyl): Update to 2.4.1.
[source]: Remove the commit and use the release version. Changed to the github
repo.
[arguments]: Remove the disabled parallel-build and out-of-source.
[home-page]: Changed to new host Université Claude-Bernard Lyon 1.
[synopsis]: Use proper capitalization.
* gnu/packages/bioinformatics.scm (bpp-seq): Update to 2.4.1.
[source]: Remove the commit and use the release version. Changed to the github
repo.
[arguments]: Remove the disabled parallel-build and out-of-source.
[home-page]: Changed to new host Université Claude-Bernard Lyon 1.
* gnu/packages/bioinformatics.scm (bpp-core): Update to 2.4.1.
[source]: Remove the commit and use the release version. Changed to the github
stored sources.
[arguments]: Remove the disabled parallel-build.
[home-page]: Changed to new host Université Claude-Bernard Lyon 1.
This is a followup to d3bc56da04.
* gnu/packages/web-browsers.scm (luakit)[arguments]<#:phases>: Remove
unnecessary INPUTS key.
[inputs]: Sort alphabetically.
* gnu/packages/parallel.scm (clog): New variable.
* gnu/packages/patches/clog-fix-shared-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
florhizome