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68734 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice 9fdee1e947 gnu: srt: Update to 1.4.3. 
* gnu/packages/networking.scm (srt): Update to 1.4.3.
 2021-05-01 11:29:10 +02:00
Tobias Geerinckx-Rice ad35e2f8ec gnu: ustr: Omit static libraries. 
* gnu/packages/textutils.scm (ustr)[arguments]: Add a new
'omit-static-libraries phase.
 2021-05-01 11:29:10 +02:00
Nicolas Goaziou 73b6660cd1 gnu: emacs-marginalia: Update to 0.5. 
* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 0.5.
 2021-04-30 21:11:57 +02:00
Nicolas Goaziou fc2df097f3 gnu: emacs-consult: Update to 0.7. 
* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 0.7.
 2021-04-30 21:11:27 +02:00
Oleg Pykhalov 3036bbe1c8 gnu: emacs-which-key: Update to 3.5.2. 
* gnu/packages/emacs-xyz.scm (emacs-which-key): Update to 3.5.2.
 2021-04-30 20:46:38 +03:00
Roel Janssen f09e4dd8ea gnu: Add pbgzip. 
* gnu/packages/bioinformatics.scm (pbgzip): New variable.
 2021-04-30 18:44:46 +02:00
Ludovic Courtès 5866fa558b Merge branch 'wip-ungrafting' 2021-04-30 18:21:31 +02:00
Brendan Tildesley ed9d890e0e gnu: xfce4-settings: Add gsettings-desktop-schemas. 
* gnu/packages/xfce.scm (xfce4-settings):[propagated-inputs]: Add
gsettings-desktop-schemas. This makes it appear in the system profile
via the xfce service. This fixes a bug where changing icon theme causes
xfce4-appearance-settings to crash with the error:

GLib-GIO-ERROR **: 15:41:45.828: Settings schema 'org.gnome.desktop.interface' is not installed
Trace/breakpoint trap

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-04-30 17:37:45 +02:00
Xinglu Chen 953e7d84ce gnu: emacs-xref: Fix ELPA URL. 
* gnu/packages/emacs-xyz.scm (emacs-xref)[source]: Use “.tar” instead of “.el”
in the URL.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-04-30 16:47:31 +02:00
Raghav Gururajan ee86a035c7 gnu: libsoup: Update home-page. 
* gnu/packages/gnome.scm (libsoup)[home-page]: Modify.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-04-30 16:12:41 +02:00
Raghav Gururajan 2fd6484ad3 gnu: libsoup: Adjust inputs. 
* gnu/packages/gnome.scm (libsoup)[inputs]: Add samba and
move glib-networking to ...
[propagated-inputs]: ... here.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-04-30 16:12:41 +02:00
Nicolas Goaziou d5fdd88739 gnu: emacs-xref: Update to 1.1.0. 
* gnu/packages/emacs-xyz.scm (emacs-xref): Update to 1.1.0.
 2021-04-30 16:01:55 +02:00
Nicolas Goaziou d3bed700a2 gnu: emacs-tramp: Update to 2.5.0.4. 
* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.5.0.4.
 2021-04-30 16:01:46 +02:00
Nicolas Goaziou 2130a43874 gnu: emacs-auctex: Update to 13.0.11. 
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.0.11.
 2021-04-30 16:01:39 +02:00
Nicolas Goaziou 5511a5b662 gnu: emacs-project: Update to 0.6.0. 
* gnu/packages/emacs-xyz.scm (emacs-project): Update to 0.6.0.
 2021-04-30 16:01:30 +02:00
Sergiu Ivanov 847f523381 gnu: Add aspell-dict-ro. 
* gnu/packages/aspell.scm (aspell-dict-ro): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2021-04-30 12:51:40 +02:00
Sharlatan Hellseher 91ba42509e gnu: Add cl-bknr-datastore. 
* gnu/packages/lisp-xyz.scm (cl-bknr-datastore, sbcl-bknr-datastore): New
  variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-04-30 09:42:07 +02:00
Sharlatan Hellseher c72c3e50cd gnu: Add cl-unit-test. 
* gnu/packages/lisp-xyz.scm (cl-unit-test, ecl-unit-test, sbcl-unit-test): New
  variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-04-30 09:16:22 +02:00
Efraim Flashner 131265ea3a gnu: vim-fugitive: Update to 3.3. 
* gnu/packages/vim.scm (vim-fugitive): Update to 3.3.
 2021-04-29 23:22:48 +03:00
Efraim Flashner 59dbf6e190 gnu: vim-asyncrun: Update to 2.8.6. 
* gnu/packages/vim.scm (vim-asyncrun): Update to 2.8.6.
 2021-04-29 23:19:48 +03:00
Oleg Pykhalov ed1e011dd5 gnu: emacs-elfeed: Update to 3.4.1. 
* gnu/packages/emacs-xyz.scm (emacs-elfeed): Update to 3.4.1.
 2021-04-29 21:02:13 +03:00
Efraim Flashner bdf9c7db6d gnu: nano: Update to 5.7. 
* gnu/packages/nano.scm (nano): Update to 5.7.
 2021-04-29 20:53:13 +03:00
Andreas Enge df0b723345 gnu: mpfrcx: Update to 0.6.1. 
* gnu/packages/algebra.scm (mpfrcx): Update to 0.6.1.
 2021-04-29 15:44:15 +02:00
Ludovic Courtès 2c11e7be74 Merge remote-tracking branch 'origin/master' into wip-ungrafting 2021-04-29 15:41:48 +02:00
Guillaume Le Vaillant 041d62f7cc gnu: bigloo: Update to 4.3g. 
* gnu/packages/scheme.scm (bigloo): Update to 4.3g.
  [source]: Remove bundled libunistring and pcre.
  [arguments]: Add 'fix-gmp-detection' phase. Add options to 'configure' phase
  to throw an error when gmp is not found.
 2021-04-29 14:57:15 +02:00
Roel Janssen 7540f6915c gnu: Update bedtools to 2.30.0. 
* gnu/packages/bioinformatics.scm (bedtools): Update to 2.30.0,
  [inputs]: Use latest samtools.
 2021-04-29 12:14:06 +02:00
Roel Janssen 558d11c3a8 gnu: Update samtools to 1.12. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.12.
 2021-04-29 12:14:02 +02:00
Roel Janssen b904bb89a0 gnu: Update bcftools to 1.12. 
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.12.
 2021-04-29 12:13:56 +02:00
Roel Janssen 241994230b gnu: htslib: Update to 1.12. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.12.
 2021-04-29 12:13:46 +02:00
Mathieu Othacehe a6a36059d5 gnu: kmscon: Fix layout setup. 
Kmscon may discover multiple inputs, corresponding to multiple devices. This
means that the uxkb_dev_keymap_update function may be called multiple times,
and the FIFO is registered on each input poll loop.

When a new layout is written on the FIFO by the installer, the first input
picking up the message, will apply the new layout. However, that input may not
be the input that the user is currently using.

To fix it, register the FIFO on the first input poll loop, but apply the new
layout on all the inputs in the uxkb_keymap_update_handler function.

* gnu/packages/patches/kmscon-runtime-keymap-switch.patch
(uxkb_keymap_update_handler): Apply the new layout to all the inputs.
(input_new_dev): Register the FIFO fd only on the first input poll loop.
 2021-04-29 12:12:13 +02:00
Ricardo Wurmus 74b3f2cbb1 gnu: Add r-qpcr. 
* gnu/packages/cran.scm (r-qpcr): New variable.
 2021-04-29 09:55:57 +02:00
Kyle Meyer 04ef4c7880 gnu: git-annex: Update to 8.20210428. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20210428.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-04-29 10:17:23 +03:00
Ryan Prior eed2c4843f gnu: oil: Update to 0.8.10. 
* gnu/packages/shells.scm (oil): Update to 0.8.10.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-04-29 10:14:03 +03:00
BonfaceKilz f2b2016bfd gnu: Add python-hissp. 
* gnu/packages/python-xyz.scm (python-hissp): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-04-29 10:01:16 +03:00
Kei Kebreau 685e4733ad gnu: xaos: Update to 4.2.1. 
* gnu/packages/maths.scm (xaos): Update to 4.2.1.
[arguments]: Patch call to "lrelease" in XaoS.pro.
 2021-04-29 00:44:03 -04:00
Vagrant Cascadian d018a11ee0 gnu: linux-libre-arm64-generic@5.10: Add eDP panel, audio and battery 
support for Pinebook Pro.

* gnu/packages/linux.scm (linux-libre-5.10-source): Add pinebook pro lcd patch.
  (linux-libre-arm64-generic-5.10): Add audio and battery modules.
 2021-04-28 16:56:58 -07:00
Vagrant Cascadian e7fbf10066 gnu: linux-libre-arm64-generic: Add eDP panel, battery and audio 
support for Pinebook Pro.

* gnu/packages/linux.scm (linux-libre-5.11-source): Add Pinebook Pro
  lcd patch.
  (linux-libre-arm64-generic): Enable audio and battery modules for
  Pinebook Pro.
* gnu/packages/patches/linux-libre-arm64-generic-pinebook-lcd.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
 2021-04-28 16:56:35 -07:00
Xinglu Chen 0d570b6019 gnu: emacs-hyperbole: Install images and help files. 
* gnu/packages/emacs-xyz.scm (emacs-hyperbole)[arguments]: Include help file
and install images for the manual.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-04-29 00:29:41 +02:00
Xinglu Chen 43684b19da gnu: emacs-corfu: Update to 0.4. 
* gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 0.4.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-04-29 00:25:29 +02:00
Leo Famulari 22b3dd559c gnu: isc-dhcp: Update bundled BIND to 9.11.31 [security fixes]. 
Fixes CVE-2021-{25214,25215,25216].

* gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled BIND to 9.11.31.
 2021-04-28 17:26:05 -04:00
Tobias Geerinckx-Rice b95f422714 gnu: bind: Update to 9.16.15 [fixes CVE-2021-25214, CVE-2021-25215, CVE-2021-25216]. 
* gnu/packages/dns.scm (isc-bind): Update to 9.16.15.
 2021-04-28 22:35:13 +02:00
Leo Famulari 958613f1af gnu: linux-libre 4.4: Update to 4.4.268. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.268.
(linux-libre-4.4-pristine-source): Update hash.
 2021-04-28 16:32:54 -04:00
Leo Famulari cdd22eacae gnu: linux-libre 4.9: Update to 4.9.268. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.268.
(linux-libre-4.9-pristine-source): Update hash.
 2021-04-28 16:32:54 -04:00
Leo Famulari a3535c4383 gnu: linux-libre 4.14: Update to 4.14.232. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.232.
(linux-libre-4.14-pristine-source): Update hash.
 2021-04-28 16:32:54 -04:00
Leo Famulari 75d8067779 gnu: linux-libre 4.19: Update to 4.19.189. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.189.
(linux-libre-4.19-pristine-source): Update hash.
 2021-04-28 16:32:54 -04:00
Leo Famulari 3d1c37122e gnu: linux-libre 5.4: Update to 5.4.115. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.115.
(linux-libre-5.4-pristine-source): Update hash.
 2021-04-28 16:32:53 -04:00
Leo Famulari 4499655166 gnu: linux-libre 5.10: Update to 5.10.33. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.33.
(linux-libre-5.10-pristine-source): Update hash.
 2021-04-28 16:32:53 -04:00
Leo Famulari 82eb714cb3 gnu: linux-libre: Update to 5.11.17. 
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.17.
(linux-libre-5.11-pristine-source): Update hash.
 2021-04-28 16:32:47 -04:00
Ricardo Wurmus e7707d5262 gnu: pigx-bsseq: Update to 0.1.3. 
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.3.
[inputs]: Add r-ggbio, r-matrixstats, and r-reshape2.
 2021-04-28 21:58:05 +02:00
Tobias Geerinckx-Rice 7f9888516f gnu: ustr: Don't use vsnprintf. 
This follows up on 1059d1570b,
which caused new tests failures on non-cross builds.

* gnu/packages/textutils.scm (ustr)[arguments]: Return "0" for
./autoconf_vsnprintf.
 2021-04-28 21:41:20 +02:00