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Code Activity
66,314 Commits 74 Branches 40 Tags
a13f45c1505fb4cf02dcbd3a80df90cc3edbb9ca
Commit Graph

58667 Commits

Author SHA1 Message Date
Guillaume Le Vaillant
a13f45c150 build-system: asdf: Switch from bundles to regular compilation. 
* gnu/packages/lisp.scm (sbcl, ecl)[native-search-paths]: Add
  'XDG_CONFIG_DIRS'.
* guix/build-system/asdf.scm (asdf-build): Replace 'asd-file' and
  'asd-system-name' keywords by 'asd-files' and 'asd-systems'.
* guix/build/asdf-build-system.scm (%object-prefix,
  %lisp-source-install-prefix): Update variables.
  (install): Update variable.
  (main-system-name): New variable.
  (copy-source): Replace 'asd-file' and 'asd-system-name' keywords by
  'asd-files' and 'asd-systems'.
  (configure): New variable.
  (build, check): Replace 'asd-file' and 'asd-system-name' keywords by
  'asd-files' and 'asd-systems'.
  (create-asd-file, symlink-asd-files): Remove variables.
  (create-asdf-configuration): New variable.
  (cleanup-files): Update variable.
  (%standard-phases): Remove 'create-asd-file' and 'symlink-asd-files' phases.
  Add 'configure' and 'create-asdf-configuration' phases.
* guix/build/lisp-utils.scm (%bundle-install-prefix, normalize-dependency,
  inputs->asd-file-map, asdf-load-all, compile-system): Remove variables.
  (compile-systems): New variable.
  (system-dependencies, compiled-system, generate-system-definition): Remove
  variable.
  (test-system): Replace 'asd-file' parameter by 'asd-files'.
  (generate-executable-for-system): Update variable.
  (generate-dependency-links, make-asd-file, bundle-asd-file): Remove
  variables.
  (make-asdf-configuration): New variable.
  (build-program, build-image): Set 'XDG_CONFIG_DIRS'.
  (generate-executable): Update variable.
 2020-09-12 11:18:56 +02:00
Danny Milosavljevic
8ed0c56725 gnu: python-aiodns: Propagate python-pycares. 
* gnu/packages/python-web.scm (python-aiodns)[inputs]: Move python-pycares...
[propagated-inputs]: ...to here.
 2020-09-12 02:33:06 +02:00
Raghav Gururajan
dbcfefe5ec gnu: Add poezio. 
* gnu/packages/messaging.scm (poezio): New variable.
 2020-09-12 02:25:31 +02:00
Raghav Gururajan
c6e8d17b02 gnu: Add python-potr. 
* gnu/packages/python-crypto.scm (python-potr): New variable.
 2020-09-12 02:19:05 +02:00
Raghav Gururajan
c519a5b5b6 gnu: Add python-slixmpp. 
* gnu/packages/python-xyz.scm (python-slixmpp): New variable.
 2020-09-12 02:16:57 +02:00
Danny Milosavljevic
e88242cb75 gnu: ebusd: Enable MQTT support. 
* gnu/packages/embedded.scm (ebusd)[inputs]: Add mosquitto.
 2020-09-12 02:07:34 +02:00
Danny Milosavljevic
c3bbaea727 gnu: Add mosquitto. 
* gnu/packages/messaging.scm (mosquitto): New variable.
 2020-09-12 02:07:30 +02:00
Tobias Geerinckx-Rice
52569eeb7f gnu: lldpd: Update to 1.0.6. 
* gnu/packages/networking.scm (lldpd): Update to 1.0.6.
 2020-09-11 23:30:45 +02:00
Tobias Geerinckx-Rice
dd6eac3e47 gnu: enet: Update to 1.3.16. 
* gnu/packages/networking.scm (enet): Update to 1.3.16.
 2020-09-11 23:30:45 +02:00
Tobias Geerinckx-Rice
0649c3cafa gnu: batctl: Update to 2020.3. 
* gnu/packages/networking.scm (batctl): Update to 2020.3.
 2020-09-11 23:30:44 +02:00
Tobias Geerinckx-Rice
54151d1af5 Revert "gnu: dovecot: Set moduledir to global directory." 
This reverts commit db0109be42.
Same reason as commit d9d88c2ff0.
 2020-09-11 23:30:44 +02:00
Tobias Geerinckx-Rice
d9d88c2ff0 Revert "services: dovecot: Use modules via symlink to system profile." 
This reverts commit bcfe0f0c1e for now.

It breaks most current use(r)s of the Dovecot service and needs to be
combined with an extra modules configuration field of some kind.

See <https://issues.guix.gnu.org/43347>.
 2020-09-11 22:38:08 +02:00
Tobias Geerinckx-Rice
ef500f9be4 gnu: padthv1: Update to 0.9.17. 
* gnu/packages/music.scm (padthv1): Update to 0.9.17.
[inputs]: Replace fftw with fftwf.
 2020-09-11 22:38:07 +02:00
Tobias Geerinckx-Rice
a43fcc720e gnu: libetpan: Update to 1.9.4. 
* gnu/packages/mail.scm (libetpan): Update to 1.9.4.
 2020-09-11 22:38:07 +02:00
Ricardo Wurmus
a1ea0585d0 gnu: bsequencer: Update to 1.6.0. 
* gnu/packages/music.scm (bsequencer): Update to 1.6.0.
 2020-09-11 22:19:26 +02:00
Ricardo Wurmus
8458490bc2 gnu: r-adaptivesparsity: End build phase on #T. 
* gnu/packages/cran.scm (r-adaptivesparsity)[arguments]: End phase
"link-against-armadillo" with Boolean.
 2020-09-11 22:04:41 +02:00
Ricardo Wurmus
fd498532ab gnu: r-adaptivesparsity: Fix case of "Gaussian". 
* gnu/packages/cran.scm (r-adaptivesparsity)[description]: Fix typo.
 2020-09-11 22:04:12 +02:00
Ricardo Wurmus
dbef55b7aa gnu: r-qtl: Use CRAN-URI. 
* gnu/packages/cran.scm (r-qtl)[source]: Use CRAN-URI instead of explicit
mirror URL.
 2020-09-11 22:02:22 +02:00
Ricardo Wurmus
1e8bfc4cf9 gnu: r-qtl: Correct indentation. 
* gnu/packages/cran.scm (r-qtl): Reindent.
[description]: Reflow paragraphs.
 2020-09-11 22:00:30 +02:00
zimoun
d4e2ec1b8a gnu: r-absfiltergsea: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-absfiltergsea): Move from here...
* gnu/packages/cran.scm (r-absfiltergsea): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:23 +02:00
zimoun
77c7394086 gnu: r-diversitree: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-diversitree): Move from here...
* gnu/packages/cran.scm (r-diversitree): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:23 +02:00
zimoun
415aa8a583 gnu: r-phangorn: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-phangorn): Move from here...
* gnu/packages/cran.scm (r-phangorn): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:21 +02:00
zimoun
f9c0b2e05a gnu: r-seurat: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-seurat): Move from here...
* gnu/packages/cran.scm (r-seurat): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:17 +02:00
zimoun
b31c364467 gnu: r-maldiquant: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-maldiquant): Move from here...
* gnu/packages/cran.scm (r-maldiquant): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:12 +02:00
zimoun
30aaee3306 gnu: r-seqminer: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-seqminer): Move from here...
* gnu/packages/cran.scm (r-seqminer): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:07 +02:00
zimoun
66a8e62070 gnu: r-qtl2: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-qtl2): Move from here...
* gnu/packages/cran.scm (r-qtl2): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:03 +02:00
zimoun
496a52dc41 gnu: r-qtl: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-qtl): Move from here...
* gnu/packages/cran.scm (r-qtl): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:58:58 +02:00
zimoun
c23ff34423 gnu: r-igraph: Move to (gnu packages cran). 
* gnu/packages/graph.scm (r-igraph): Move from here...
* gnu/packages/cran.scm (r-igraph): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:58:55 +02:00
zimoun
1dc50e4190 gnu: r-diffusionmap: Move to (gnu packages cran). 
* gnu/packages/graph.scm (r-diffusionmap): Move from here...
* gnu/packages/cran.scm (r-diffusionmap): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:58:49 +02:00
zimoun
d3d38bd8f1 gnu: r-adaptivesparsity: Move to (gnu packages cran). 
* gnu/packages/machine-learning.scm (r-adaptivesparsity): Move from here...
* gnu/packages/cran.scm (r-adaptivesparsity): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:48:38 +02:00
zimoun
b17ace24ca gnu: r-codedepends: Comment why it is in bioconductor.scm. 
* gnu/packages/bioconductor.scm (r-codedepends): Add comment.
 2020-09-11 21:46:51 +02:00
Peter Lo
7e88ee9f02 gnu: Add r-fhtest. 
* gnu/packages/bioconductor.scm (r-fhtest): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:33:02 +02:00
Peter Lo
655c4bb25c gnu: Add r-interval. 
* gnu/packages/bioconductor.scm (r-interval): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:01:30 +02:00
Peter Lo
962c7ceff5 gnu: Add r-perm. 
* gnu/packages/cran.scm (r-perm): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 19:18:46 +02:00
Peter Lo
4a13770003 gnu: Add r-mlecens. 
* gnu/packages/cran.scm (r-mlecens): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 19:16:51 +02:00
Peter Lo
488001eb3f gnu: Add r-icens. 
* gnu/packages/bioconductor.scm (r-icens): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 19:13:58 +02:00
Ricardo Wurmus
19748ea380 gnu: r-tidymodels: Update to 0.1.1. 
* gnu/packages/cran.scm (r-tidymodels): Update to 0.1.1.
[propagated-inputs]: Remove r-pillar, r-tidyposterior, r-tidypredict, and
r-tidytext; add r-modeldata and r-tidyr.
[native-inputs]: Add r-rmarkdown, pandoc, and pandoc-citeproc.
 2020-09-11 19:06:47 +02:00
Ricardo Wurmus
cecb700853 gnu: r-infer: Update to 0.5.3. 
* gnu/packages/cran.scm (r-infer): Update to 0.5.3.
 2020-09-11 19:06:47 +02:00
Ricardo Wurmus
6edf558fd0 gnu: Add r-modeldata. 
* gnu/packages/cran.scm (r-modeldata): New variable.
 2020-09-11 19:06:47 +02:00
Ricardo Wurmus
37e9a7fabf gnu: r-parsnip: Update to 0.1.3. 
* gnu/packages/cran.scm (r-parsnip): Update to 0.1.3.
 2020-09-11 19:04:10 +02:00
Ricardo Wurmus
f5d7f42ae2 gnu: r-tidytext: Update to 0.2.5. 
* gnu/packages/cran.scm (r-tidytext): Update to 0.2.5.
[propagated-inputs]: Remove r-stopwords; add r-tibble.
 2020-09-11 19:04:06 +02:00
Ricardo Wurmus
0fa58b2488 gnu: r-tidypredict: Update to 0.4.6. 
* gnu/packages/cran.scm (r-tidypredict): Update to 0.4.6.
 2020-09-11 19:04:01 +02:00
Ricardo Wurmus
471f0aacd2 gnu: r-tune: Update to 0.1.1. 
* gnu/packages/cran.scm (r-tune): Update to 0.1.1.
[propagated-inputs]: Add r-vctrs.
 2020-09-11 19:03:58 +02:00
Ricardo Wurmus
dfa2cfeb3e gnu: r-dials: Update to 0.0.8. 
* gnu/packages/cran.scm (r-dials): Update to 0.0.8.
 2020-09-11 19:03:54 +02:00
Ricardo Wurmus
a1d7ec4893 gnu: r-yardstick: Update to 0.0.7. 
* gnu/packages/cran.scm (r-yardstick): Update to 0.0.7.
[propagated-inputs]: Remove r-rcpp.
 2020-09-11 19:03:51 +02:00
Ricardo Wurmus
b0b24be7b7 gnu: r-workflows: Update to 0.1.3. 
* gnu/packages/cran.scm (r-workflows): Update to 0.1.3.
 2020-09-11 19:03:46 +02:00
Ricardo Wurmus
820f415174 gnu: r-hardhat: Update to 0.1.4. 
* gnu/packages/cran.scm (r-hardhat): Update to 0.1.4.
 2020-09-11 19:03:43 +02:00
Peter Lo
23bd6f6ef1 gnu: Add r-tidymodels. 
* gnu/packages/cran.scm (r-tidymodels): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:49 +02:00
Peter Lo
48d40c7717 gnu: Add r-infer. 
* gnu/packages/cran.scm (r-infer): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:49 +02:00
Peter Lo
35f033750f gnu: Add r-parsnip. 
* gnu/packages/cran.scm (r-parsnip): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:49 +02:00