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a67efdfbcbd221c287ed72629ebae79c01f07bf5
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158217 Commits

Author SHA1 Message Date
Ricardo Wurmus
a67efdfbcb gnu: r-dir-expiry: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.18.0.

Change-Id: I57b0d126c4801c909c21db69456b325f49d6d05d
 2025-11-29 12:21:28 +01:00
Ricardo Wurmus
1dd3d45e78 gnu: r-genetclassifier: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.50.0.

Change-Id: I691aad53e5b39755a2e169879246a431cf2a2b0d
 2025-11-29 12:21:28 +01:00
Ricardo Wurmus
088304d2f8 gnu: r-minet: Update to 3.68.0. 
* gnu/packages/bioconductor.scm (r-minet): Update to 3.68.0.

Change-Id: Ib5276a348354e55e1a49b0ab69b8100f3b6fb6f3
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
bc0b1a3145 gnu: r-biobtreer: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.22.0.

Change-Id: I9815a45242d0d535db0c6e7f89fb31baa2762fee
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
03a7812a8d gnu: r-bgeedb: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.36.0.

Change-Id: Ia3078cd0f9ad9f3ddbab915b2bb9744515c7fb42
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
9c6512c77e gnu: r-bgeecall: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.26.0.
[propagated-inputs]: Remove r-biomart; add r-annotationdbi, r-curl, r-ggplot2, r-iranges,
r-rcurl, r-readr, r-rsqlite, r-scales, r-spatstat-univar, and
r-stringr.

Change-Id: I7e4d779eb12bbbd69578c096053bd3dd4f6f74d9
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
0d5bd5b048 gnu: r-beclear: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.26.0.

Change-Id: Ie072dc1d744a01b1c97cd74b1d072f63a736f6b7
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
f55f7add71 gnu: r-megadepth: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.20.0.

Change-Id: Ie818451b75635a4117ffdd108fcfb6adb94157a4
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
379e68afb4 gnu: r-guitar: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.26.0.

Change-Id: I6e0c1f76b74b7c2c9d5afbedf3b9a3a89a32a38a
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
d075f5fe3f gnu: r-snpstats: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.60.0.
[propagated-inputs]: Remove r-zlibbioc.

Change-Id: Id163a74bef1d4cf3b97d6208ce3c06f5e07daf54
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
b114962042 gnu: r-snprelate: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-snprelate): Update to 1.44.0.
[propagated-inputs]: Add r-rhpcblasctl.

Change-Id: Ibb62c4e7f3063a8334ec1abaf9924907770e9d8c
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
3eda99f186 gnu: r-pathview: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.50.0.

Change-Id: I0dc8aebb3150ecece39526eb95e4dd617115439b
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
f9e2f26f43 gnu: r-parody: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-parody): Update to 1.68.0.

Change-Id: I37e116daa9446468d1206878bee9f14e46fb820f
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
ea86c510d2 gnu: r-ldblock: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.40.0.
[propagated-inputs]: Add r-seqinfo.

Change-Id: Idcc9a341377c8fb23f208fe26f471c7ece17a649
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
066270af1e gnu: r-kegggraph: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.70.0.

Change-Id: If3f34e5b444e15afb8583aee5f0cb9fca3699533
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
e74755b6f1 gnu: r-gwastools: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-gwastools): Update to 1.56.0.

Change-Id: I1a8ac73babb7ce5e0fe654c4fb17445c952f9c6a
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
f114fbaf5f gnu: r-gwascat: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.42.0.
[propagated-inputs]: Add r-seqinfo.

Change-Id: I3be0520167579fadee07647ae232cf42a9ff63cc
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
7201a66cb3 gnu: r-gviz: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.54.0.
[propagated-inputs]: Add r-seqinfo.

Change-Id: I43be1c05a4112bfb7957ae9bad6ca76aa11a0f9e
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
03fb8b030f gnu: r-ggbio: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.58.0.
[propagated-inputs]: Remove r-ggally; add r-seqinfo.

Change-Id: If8b4eb53b8c3568cc225e4ce73af41c0b0217f20
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
ccf77ddf07 gnu: r-catalyst: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.34.1.

Change-Id: I8f9e7fb3c0a664ad8f9a306455df1ab76fdf7a91
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
b41b9d1c4d gnu: r-msmstests: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.48.0.

Change-Id: I4a83db3c7580880db4c6e2539959ffb48e0fe32c
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
9e718a65bd gnu: r-msmseda: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.48.0.

Change-Id: Id4195b088b2e858a2c576a0f0f9f17790437d5d8
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
f3839a257e gnu: r-biocio: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.20.0.

Change-Id: I568d3175a0439437b32c5066f1c61e3b1887b800
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
0e5fa6a0e2 gnu: r-msfeatures: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.18.0.

Change-Id: I08cd3b7fa3b34352b216e8abdd74d6fd7b34f14f
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
40225786c4 gnu: r-delayedmatrixstats: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.32.0.

Change-Id: Ia8d2217e009733c1ab08b84eed2ffab757ebf886
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
987e2d7c07 gnu: r-spatialexperiment: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-spatialexperiment): Update to 1.20.0.

Change-Id: I6dd4993bd709ff22146a2e95abe7c81ce54b51ed
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
a8a0853e31 gnu: r-sparsematrixstats: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.22.0.

Change-Id: Idef952d222ab5ba5a95927bb64b8866cd5554e8f
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
21efa1a295 gnu: r-sparsearray: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.10.2.

Change-Id: Ib8d9d63e0e85c175d45e4ab5a0887fd67123d3f4
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
16f00216ad gnu: r-scran: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.38.0.

Change-Id: I6104555f0db943cadd291c01cceeab947157b17b
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
573de09389 gnu: r-scater: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-scater): Update to 1.38.0.

Change-Id: I23b3c542fd7cf4588a23a61f62744b5bb7a89e87
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
8e5e4c4a7b gnu: r-scuttle: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.20.0.

Change-Id: Ic3e84c30a18a71a375c5920b72ea9a88b3cc71c9
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
c2047053c9 gnu: r-singlecellexperiment: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.32.0.

Change-Id: I71e8923bd8f01a0a360a830c38be9bb02702d579
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
7904e9b728 gnu: r-chromvar: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.32.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I429812ba4c5f5a378d23fe4cc554061c4bb2996c
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
cb6b7ca64a gnu: r-motifmatchr: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.32.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: If848b711ba7d8807d54a7b2ba9d5adb79a304515
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
f51829c2d1 gnu: r-maftools: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.26.0.
[propagated-inputs]: Remove r-zlibbioc.

Change-Id: I742a80319ff9be646f11cb34220e9b64b1358beb
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
958dfc42db gnu: r-tfbstools: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.48.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I2857b5e48dd143175ae44db7632e3ef24916bd96
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
3d91f6a72d gnu: r-cner: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-cner): Update to 1.46.0.
[propagated-inputs]: Add r-seqinfo.

Change-Id: I4682a492df0fe2fb34d2672db7d183f61713602e
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
a6afc4a575 gnu: r-beaddatapackr: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-beaddatapackr): Update to 1.62.0.

Change-Id: Id6bc45885bfe0f30039ef2c2fff6278ed3a7dad3
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
7443c565ff gnu: r-beachmat-hdf5: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-beachmat-hdf5): Update to 1.8.0.

Change-Id: Ic9375c1244d64717f64f2ed186245f7b47131f2a
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
922e9334c1 gnu: r-beachmat: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.26.0.

Change-Id: If898ce7a8949bd67762042e9bfad464497e407b1
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
1797aba70d gnu: r-rhdf5lib: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.32.0.

Change-Id: I104b0ef447b9eb5e370e9eba52850bdbfd9a2b12
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
2dfd0bec3e gnu: r-hdf5array: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.38.0.

Change-Id: I467372065960b1519097003c3b038e053eaff9e1
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
97e237bcf7 gnu: r-hitc: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.54.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I1adb1b1a33ca6b815aeefb5f7fb7d8b2774f5cde
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
9a3212754b gnu: r-h5mread: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-h5mread): Update to 1.2.0.

Change-Id: I70925841ea2f1a5a1f73b53dda5f0dcc948b990e
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
528e1f19ba gnu: r-fithic: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.36.0.

Change-Id: I97f91ffeb67bd30b491fc074a4febc0811bbe6b2
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
a6a2a8a344 gnu: r-fishpond: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.16.0.

Change-Id: I72ecd51878bd5c397e827ac56684513d4f413b0a
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
4c895c454c gnu: r-rgraphviz: Update to 2.54.0. 
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.54.0.

Change-Id: Id136345141264741b662adf043d6afb4e3abcf85
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
87dd8093e2 gnu: r-s4vectors: Update to 0.48.0. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.48.0.
[native-inputs]: Remove r-matrix.

Change-Id: I1183f571248c326677fc49c19eba880aa824d6e7
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
2f81d29fe2 gnu: r-s4arrays: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.10.0.
[propagated-inputs]: Remove r-crayon.

Change-Id: Id59727f851196c3130b589a70a9ef461fca2d631
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
54ef097071 gnu: r-preprocesscore: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.72.0.

Change-Id: I8b11e9752d440430a7c5b150c8655933d15bab28
 2025-11-29 12:21:22 +01:00