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a6a2a8a3440bfbcbff97572cfc5d8dd597fac90a
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163402 Commits

Author SHA1 Message Date
Ricardo Wurmus
a6a2a8a344 gnu: r-fishpond: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.16.0.

Change-Id: I72ecd51878bd5c397e827ac56684513d4f413b0a
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
4c895c454c gnu: r-rgraphviz: Update to 2.54.0. 
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.54.0.

Change-Id: Id136345141264741b662adf043d6afb4e3abcf85
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
87dd8093e2 gnu: r-s4vectors: Update to 0.48.0. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.48.0.
[native-inputs]: Remove r-matrix.

Change-Id: I1183f571248c326677fc49c19eba880aa824d6e7
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
2f81d29fe2 gnu: r-s4arrays: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.10.0.
[propagated-inputs]: Remove r-crayon.

Change-Id: Id59727f851196c3130b589a70a9ef461fca2d631
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
54ef097071 gnu: r-preprocesscore: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.72.0.

Change-Id: I8b11e9752d440430a7c5b150c8655933d15bab28
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
eae44928da gnu: r-icens: Update to 1.82.0. 
* gnu/packages/bioconductor.scm (r-icens): Update to 1.82.0.

Change-Id: I3a17f45278cd403963643232bdd77f939093f28c
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
8a38952f0b gnu: r-m3c: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.32.0.

Change-Id: Ic4fa98380ab6b0b2a6069a18d23a8a78fd385160
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
875edbbcf7 gnu: r-rgreat: Update to 2.12.1. 
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.12.1.

Change-Id: I4466a870b28c7bb925cb1ec878ff867658507c76
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
95a5e84c38 gnu: r-biodist: Update to 1.82.0. 
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.82.0.

Change-Id: I6db0db90d09d264280a48658ce83e1d8cf4a7b86
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
87a11d69c6 gnu: r-biocworkflowtools: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.36.0.

Change-Id: I0b8bbffc7b7e83738ae702072ec7162d731a7953
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
21be32b521 gnu: r-biocset: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.24.0.

Change-Id: Id95bafe016b38f17cf06a5cb59a2fc34c2048451
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
e949a69e10 gnu: r-biocpkgtools: Update to 1.27.12. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.27.12.

Change-Id: Ifd091a7c6c4b3a52442510e8ab6018f4d7f6681e
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
e8a1a26e27 gnu: r-biocor: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.34.0.

Change-Id: Id15823203a50706ca3a3aaf19e891957f846815a
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
6b7057d56e gnu: r-multiassayexperiment: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.36.1.
[propagated-inputs]: Add r-matrixgenerics.
[native-inputs]: Remove r-r-rsp.

Change-Id: Icd702eb14ba39ea27f24214afd5410f6688faf44
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
5aee5423cb gnu: r-grohmm: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.44.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I0818c535258c30592b18be2e094384bdef3210b6
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
5d9d7a3164 gnu: r-experimenthubdata: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-experimenthubdata): Update to 1.36.0.

Change-Id: I6d1dfb0bbddcaa40e313b32327828f270f88459d
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
9c151c02fb gnu: r-experimenthub: Update to 3.0.0. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 3.0.0.

Change-Id: Ia84690cbbc068c9d4ce7342bf7a7278b96776be2
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
4869ec092a gnu: r-biocviews: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.78.0.

Change-Id: I5ac36df894053744c5bb0f58551603af8bb312fa
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
bc12f737c6 gnu: r-biocstyle: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.38.0.

Change-Id: I9526db3923a57ea8e0727c4a179544d0ab257f7c
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
1342508c1a gnu: r-biocgraph: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.72.0.

Change-Id: I92d09fcf4b0742fe49677e1b86757232c39474d9
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
97016e98b6 gnu: r-bioccheck: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.46.0.

Change-Id: If7b32af126584b7cedfe0f963760f4748c9742c1
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
99464bb630 gnu: r-biocbaseutils: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocbaseutils): Update to 1.12.0.

Change-Id: I87d99cb293cfd8a880478bbf0373c814c1d72b11
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
bc97bd411f gnu: r-ebarrays: Update to 2.74.0. 
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.74.0.

Change-Id: I722cb27feec6ad41ad3b2fde0c1788714abe9425
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
82a4f3ef07 gnu: r-reactomepa: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.54.0.

Change-Id: I1191de6b387041355df887c326881cb75a570b24
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
8bf2be75d7 gnu: r-graphite: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.56.0.
[propagated-inputs]: Add r-dir-expiry and r-lifecycle.
[native-inputs]: Add r-a4preproc and r-all.

Change-Id: I2f15d9dd8de268a8d9b50327c8d320032599b9c2
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
a80f9b8719 gnu: r-biobroom: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.42.0.

Change-Id: Ie088b530a0d1b1ed70a0f0d60c67d6fd623e3f73
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
2fce84f3f5 gnu: r-bioassayr: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.48.0.

Change-Id: I47bdd87750a993879998ae48a3adefa61b474b44
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
3fc8dc7fdf gnu: r-fmcsr: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-fmcsr): Update to 1.52.0.

Change-Id: I4aae23d0b992c39ec52c2e2b5957f3f7effcce26
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
2a2c134f7d gnu: r-chemmineob: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-chemmineob): Update to 1.48.0.
[inputs]: Add zlib.
[propagated-inputs]: Remove r-zlibbioc.

Change-Id: Ic024e17fd4457cafc2f42410ac64e38c18627d08
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
d04d5d492c gnu: r-hyperdraw: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.62.0.

Change-Id: Ieaa9ed23377b15df89e5026b8a81f074133181d0
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
faae229469 gnu: r-hypergraph: Update to 1.82.0. 
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.82.0.

Change-Id: I21bf16d32080b3a936683aae28fea6cdcd279d9c
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
6fe6808db0 gnu: r-hybridmtest: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-hybridmtest): Update to 1.54.0.

Change-Id: I350d082d3948d85a6cc0a23e74239b86e5d65785
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
1bcb8d52ce gnu: r-rsbml: Update to 2.68.0. 
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.68.0.

Change-Id: I7d8f05b00d82be61dbdf288f96cb28654125859c
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
55f5fc265e gnu: r-bifet: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.30.0.

Change-Id: Id8bd09db8ecc47e1e0923f6af1549008ed4fa116
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
7afcc0ca0c gnu: r-bicare: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.68.0.

Change-Id: I5b4a4c6cf1a078a868412931a7495d4ea3d80338
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
c6cbcf50ca gnu: r-acde: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-acde): Update to 1.40.0.

Change-Id: Ic5a56764862232d5210753971d07423e251f3e17
 2025-11-29 12:21:18 +01:00
Ricardo Wurmus
b03ce433c3 gnu: r-acme: Update to 2.66.0. 
* gnu/packages/bioconductor.scm (r-acme): Update to 2.66.0.

Change-Id: I893e3457213a881428c420d301049c35a55978e3
 2025-11-29 12:21:18 +01:00
Ricardo Wurmus
2babf60afe gnu: r-acgh: Update to 1.88.0. 
* gnu/packages/bioconductor.scm (r-acgh): Update to 1.88.0.

Change-Id: I86ddfb3b07c1a99c3160febaa42220507daad7aa
 2025-11-29 12:21:18 +01:00
Ricardo Wurmus
9f1df24607 gnu: r-ace: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-ace): Update to 1.28.0.

Change-Id: If37691340f3edc7ba55f1810d94e2f36e8ec12b9
 2025-11-29 12:21:18 +01:00
Ricardo Wurmus
6b3953ee5d gnu: r-universalmotif: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.28.0.

Change-Id: I687431cbf073efe9e99d685963a9e0082dbcc96a
 2025-11-29 12:21:18 +01:00
Ricardo Wurmus
dd6d2ad049 gnu: r-unifiedwmwqpcr: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.46.0.

Change-Id: I1d1c1ed31c1199b9df4c7a356e3041474fc68c6f
 2025-11-29 12:21:18 +01:00
Ricardo Wurmus
35fede579d gnu: r-ucsc-utils: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-ucsc-utils): Update to 1.6.0.

Change-Id: I612859182c4fca7eb69d3cc8fec12242967ac3df
 2025-11-29 12:21:18 +01:00
Ricardo Wurmus
add04e3034 gnu: r-ucell: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-ucell): Update to 2.14.0.

Change-Id: I1ff108763154b507baa354b6a42a3d7c5645da92
 2025-11-29 12:21:18 +01:00
Ricardo Wurmus
00ce45bb92 gnu: r-htqpcr: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.64.0.

Change-Id: I994ad752d6a5d67faf6087f04625378dfcb955a3
 2025-11-29 12:21:17 +01:00
Ricardo Wurmus
cab337f056 gnu: r-variancepartition: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.40.0.
[propagated-inputs]: Add r-gtools.

Change-Id: Ia15d5d003dc0cca9faaab4fbae339a331cc3a36c
 2025-11-29 12:21:17 +01:00
Ricardo Wurmus
d07d07d626 gnu: r-variantfiltering: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.46.0.
[propagated-inputs]: Add r-seqinfo.

Change-Id: Ibd509a5ac25c9a04af77812069bf84416022370c
 2025-11-29 12:21:17 +01:00
Ricardo Wurmus
b45bf581ba gnu: r-tilingarray: Update to 1.88.0. 
* gnu/packages/bioconductor.scm (r-tilingarray): Update to 1.88.0.

Change-Id: I987139cb184d8ad55c98d7dad22d7762fe837540
 2025-11-29 12:21:17 +01:00
Ricardo Wurmus
ab58162180 gnu: r-wavcluster: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.44.0.

Change-Id: Ia3774acdbf870af8528daedd790690b8100a5f34
 2025-11-29 12:21:17 +01:00
Ricardo Wurmus
389b0a6f58 gnu: r-bigmelon: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.36.0.

Change-Id: Ia291125d59631bc16d8093c6f27bd0ba59c8a2ae
 2025-11-29 12:21:17 +01:00
Ricardo Wurmus
07c16d2827 gnu: r-gdsfmt: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.46.0.

Change-Id: Ifefbd41a643e1219a3b8e06c091713ec4d85b86e
 2025-11-29 12:21:17 +01:00