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a759cbffafbf67b3a03c80b5bdbe3f3478affc50
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104633 Commits

Author SHA1 Message Date
Christopher Baines
a759cbffaf services: guix-build-coordinator: Support extra environment vars. 
I'm looking at this because I need to do some debugging of Guile's GC, and
there are some useful environment variables for that, but it should be
generally useful.

* gnu/services/guix.scm (guix-build-coordinator-configuration-extra-environment-variables):
New procedure.
(guix-build-coordinator-shepherd-services): Pass the environment variables to
the shepherd.
* doc/guix.texi (Guix Services): Document it.
 2023-05-09 16:19:21 +01:00
Efraim Flashner
c1ffe2f21b service: qemu-binfmt: Remove broken qemu targets. 
* gnu/services.virtualization.scm (%qemu-platforms): Remove %i486,
%aarch64be.
 2023-05-09 17:27:49 +03:00
Efraim Flashner
3f00f46ada Revert "gnu: rust-bootstrap: Remove aarch64 as a supported architecture." 
This reverts commit c56d57110d.

rust-bootstrap *IS* supported on aarch64-linux, and the build farm will
catch up eventually.
 2023-05-09 16:54:29 +03:00
Ricardo Wurmus
7e421c1f5a gnu: r-scran: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.28.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
0880f325b7 gnu: r-scuttle: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.10.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
8c7ddd3a44 gnu: r-chromvar: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.22.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
d850b72346 gnu: r-hdf5array: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.28.1.
[propagated-inputs]: Add r-s4arrays.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
3bdd6fb256 gnu: r-s4vectors: Update to 0.38.1. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
da8638facb gnu: r-preprocesscore: Update to 1.62.1. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.62.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
6b2a0aab19 gnu: r-iclusterplus: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.36.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
c96ebf4cf9 gnu: r-clusterprofiler: Update to 4.8.1. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
f7642f34d0 gnu: r-dose: Update to 3.26.1. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.26.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
4228100215 gnu: r-linnorm: Update to 2.24.1. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.24.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
c6c69d4cc6 gnu: r-dnacopy: Update to 1.74.1. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.74.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
c846a694a7 gnu: r-scaledmatrix: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.8.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
95d5a918a2 gnu: r-glmgampoi: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.12.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
75869a8a94 gnu: r-oligo: Update to 1.64.1. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.64.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
a4b04c06ab gnu: r-summarizedexperiment: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.1.
[propagated-inputs]: Add r-s4arrays.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
c70787f552 gnu: r-scmap: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.22.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
0fd93c81be gnu: r-rhdf5filters: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.12.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
4b7a06b839 gnu: r-pcaexplorer: Update to 2.26.1. 
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.26.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
37f44c278f gnu: r-impute: Update to 1.74.1. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.74.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
ef3ce37eeb gnu: r-genefilter: Update to 1.82.1. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.82.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
56524dc465 gnu: r-edger: Update to 3.42.2. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.42.2.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
d9d920403a gnu: r-deseq2: Update to 1.40.1. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
7a9e68f103 gnu: r-biocparallel: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.34.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
69e954bb0a gnu: r-annotationdbi: Update to 1.62.1. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
931ac0735f gnu: r-densvis: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.10.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
06b903963c gnu: r-delayedarray: Update to 0.26.2. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.2.
[propagated-inputs]: Add r-s4arrays.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
01faf51999 gnu: r-bandits: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.16.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
13dde61328 gnu: r-bambu: Update to 3.2.2. 
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.2.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
6401f048cf gnu: r-amplican: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-amplican): Update to 1.22.1.
[propagated-inputs]: Remove r-clustercrit; add r-cluster.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
0861bca905 gnu: r-affyplm: Update to 1.76.1. 
* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.76.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
7a58dc01d3 gnu: Add r-s4arrays. 
* gnu/packages/bioconductor.scm (r-s4arrays): New variable.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
e2c47544a5 gnu: r-deoptimr: Update to 1.0-13. 
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-13.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
4141309fcd gnu: r-gdata: Update to 2.19.0. 
* gnu/packages/statistics.scm (r-gdata): Update to 2.19.0.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
9c2d020eee gnu: r-hmisc: Update to 5.1-0. 
* gnu/packages/statistics.scm (r-hmisc): Update to 5.1-0.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
0aa29c87b6 gnu: r-viridislite: Update to 0.4.2. 
* gnu/packages/statistics.scm (r-viridislite): Update to 0.4.2.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
053685b5de gnu: r-viridis: Update to 0.6.3. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.3.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
9a3a4cc88b gnu: r-pkgmaker: Update to 0.32.10. 
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.32.10.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
89b4d2de5b gnu: r-httr: Update to 1.4.6. 
* gnu/packages/statistics.scm (r-httr): Update to 1.4.6.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
7362200a9e gnu: r-chron: Update to 2.3-61. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-61.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
2872088e42 gnu: r-testthat: Update to 3.1.8. 
* gnu/packages/statistics.scm (r-testthat): Update to 3.1.8.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
ba8f4abace gnu: r-evaluate: Update to 0.21. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.21.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
87fa92288c gnu: r-nnet: Update to 7.3-19. 
* gnu/packages/statistics.scm (r-nnet): Update to 7.3-19.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
291b84b8c6 gnu: r-kernsmooth: Update to 2.23-21. 
* gnu/packages/statistics.scm (r-kernsmooth): Update to 2.23-21.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
4f67571782 gnu: r-class: Update to 7.3-22. 
* gnu/packages/statistics.scm (r-class): Update to 7.3-22.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
7b2e40a43b gnu: r-mass: Update to 7.3-60. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-60.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
b984ab470f gnu: r-misctools: Update to 0.6-28. 
* gnu/packages/cran.scm (r-misctools): Update to 0.6-28.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
f9a080f944 gnu: r-fauxpas: Update to 0.5.2. 
* gnu/packages/cran.scm (r-fauxpas): Update to 0.5.2.
 2023-05-09 15:24:14 +02:00