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163490 Commits

Author SHA1 Message Date
Ricardo Wurmus 08a5cf9ca5 gnu: r-genomicscores: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.22.0.
[propagated-inputs]: Add r-seqinfo.

Change-Id: Ic0e4b2948a8685bb23b24f682c21f738e9aa5ab3
 2025-11-29 12:21:10 +01:00
Ricardo Wurmus 6ac6236cbd gnu: r-motifstack: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.54.0.

Change-Id: I3ef1848062b52ed35b9c823cb37590095d583580
 2025-11-29 12:21:09 +01:00
Ricardo Wurmus fdb61b51e9 gnu: r-motifbreakr: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.24.0.

Change-Id: I9110cfdfecbc91ce68a5e47e843ff39d3eeb81fb
 2025-11-29 12:21:09 +01:00
Ricardo Wurmus aa377b2ea7 gnu: r-motifdb: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.52.0.

Change-Id: Ie56cb85ed04ac90d235110d4306129b8053ed728
 2025-11-29 12:21:09 +01:00
Ricardo Wurmus 6dcc83da2b gnu: r-bacon: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.38.0.

Change-Id: I60e2f4ae47cda17e2c919ca6a1de84602a31195c
 2025-11-29 12:21:09 +01:00
Ricardo Wurmus c4bac25dff gnu: r-abseqr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.28.0.

Change-Id: I12e9c93f8faa711082d3fdc6415199afcbbeb768
 2025-11-29 12:21:09 +01:00
Ricardo Wurmus 764be589aa gnu: r-a4: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.58.0.

Change-Id: I373a0d5af9d3f092b53f3c53f0ddd8bd399aa2c2
 2025-11-29 12:21:09 +01:00
Ricardo Wurmus 9737af1c9d gnu: r-a4base: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.58.0.

Change-Id: Icc5055f2ec370a05a3a5d592e6075aa83c3cb9bb
 2025-11-29 12:21:09 +01:00
Ricardo Wurmus 6e0dcebabd gnu: r-a4reporting: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.58.0.

Change-Id: I8d34bb489c634711b4681a9dbef5a537a198ef46
 2025-11-29 12:21:09 +01:00
Ricardo Wurmus 133a6ac469 gnu: r-a4preproc: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.58.0.

Change-Id: I0e44f610d2d21fe45a31f3c9d069921e42ad63d9
 2025-11-29 12:21:08 +01:00
Ricardo Wurmus 8e38519541 gnu: r-a4classif: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.58.0.

Change-Id: I5a91e95023c800aed2258af45d4146f43739f47f
 2025-11-29 12:21:08 +01:00
Ricardo Wurmus 9df122e080 gnu: r-a4core: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.58.0.

Change-Id: Ie5e1ba9ae57f2e04e20dbf2ce02007cec51c4f1f
 2025-11-29 12:21:08 +01:00
Ricardo Wurmus 000042b8d1 gnu: r-annaffy: Update to 1.82.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.82.0.

Change-Id: Icb48fbffaea92319b794e772a092c5589dde1633
 2025-11-29 12:21:08 +01:00
Ricardo Wurmus d36b275212 gnu: r-mlinterfaces: Update to 1.90.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.90.0.

Change-Id: I35afdcce9ecd1bfed4f3c104c7f5a89506479025
 2025-11-29 12:21:08 +01:00
Ricardo Wurmus b7296244cb gnu: r-clusterexperiment: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.30.0.

Change-Id: I6927d4f9c72fdc33db689745dec2e54ac1463b81
 2025-11-29 12:21:08 +01:00
Ricardo Wurmus f2f6630769 gnu: r-clusterprofiler: Update to 4.18.2. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.18.2.
[native-inputs]: Remove r-knitr; add r-quarto.

Change-Id: I849edfd14599cb72c25500cd7ba3ccf862814c0e
 2025-11-29 12:21:08 +01:00
Ricardo Wurmus fd0a17f2d1 gnu: r-enrichplot: Update to 1.30.3. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.30.3.

Change-Id: I6c3337dfbcbd1a43c179ca3c6bf37a1afdad4b78
 2025-11-29 12:21:08 +01:00
Ricardo Wurmus 6df0a55a90 gnu: r-enrichedheatmap: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-enrichedheatmap): Update to 1.40.0.

Change-Id: Ic780f8d6843b2d5865dd072d8bdd37ebb3798a75
 2025-11-29 12:21:08 +01:00
Ricardo Wurmus 807a8ae9c7 gnu: r-dose: Update to 4.4.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 4.4.0.

Change-Id: I6e95b9491dead335a24cba8c40ed7751b56e8ad3
 2025-11-29 12:21:07 +01:00
Ricardo Wurmus 30d49ffef3 gnu: r-fgsea: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.36.0.

Change-Id: I5d72ebcc660be691c614052c41b0148d8dbaebbd
 2025-11-29 12:21:07 +01:00
Ricardo Wurmus 914d3670ac gnu: r-fcscan: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.24.0.

Change-Id: I4e783afeedc67521c5233611599e9885066eba51
 2025-11-29 12:21:07 +01:00
Ricardo Wurmus f37e0c6075 gnu: r-anota2seq: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-anota2seq): Update to 1.32.0.

Change-Id: I7f487a7ffded5388a0340573e584d493c0208491
 2025-11-29 12:21:07 +01:00
Ricardo Wurmus c40a0d45bf gnu: r-anota: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.58.0.

Change-Id: I51c9f07a7b59ab41947c9c97667b09500a4720fc
 2025-11-29 12:21:07 +01:00
Ricardo Wurmus c72b80fa38 gnu: r-gosemsim: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.36.0.

Change-Id: I6837de0a394ea6747060238d656b23f2323e6eb3
 2025-11-29 12:21:07 +01:00
Ricardo Wurmus 92e98c7fff gnu: r-helloranges: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-helloranges): Update to 1.36.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: Ib79e4a8f640e631b794328603e051873632179aa
 2025-11-29 12:21:07 +01:00
Ricardo Wurmus becb321df0 gnu: r-heatplus: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.18.0.

Change-Id: Ic950c765ee33c53010b18488f79fa60310d27554
 2025-11-29 12:21:07 +01:00
Ricardo Wurmus f9ef4c68db gnu: r-varianttools: Update to 1.51.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.51.0.

Change-Id: Id23afd747dc89d7adba8adeb703eb6251ac1c3a4
 2025-11-29 12:21:06 +01:00
Ricardo Wurmus 0bc867019d gnu: r-tradeseq: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.24.0.

Change-Id: I5056a3f8393dee2c665d41490dab4d6eb686a40e
 2025-11-29 12:21:06 +01:00
Ricardo Wurmus 7e294e7038 gnu: r-ioniser: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.34.0.

Change-Id: I2701637e0181435abc0b7d559b19110dadca3fb1
 2025-11-29 12:21:06 +01:00
Ricardo Wurmus 4c460ab4b8 gnu: r-linnorm: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.34.0.

Change-Id: Ia6325f80b40ed7c39daac9641ad58e3904707b33
 2025-11-29 12:21:06 +01:00
Ricardo Wurmus ada4210359 gnu: r-lumi: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.62.0.

Change-Id: I9714d62937af9dda6e2e262661f79cc46e4b3f62
 2025-11-29 12:21:06 +01:00
Ricardo Wurmus 9ebc80618e gnu: r-lefser: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.20.2.

Change-Id: I55d6bebb6a2b6fb443f0b27c50fe0f0e49462384
 2025-11-29 12:21:06 +01:00
Ricardo Wurmus a251dca099 gnu: r-methylumi: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.56.0.

Change-Id: Iee4a1e0d4203ce7475b9601752c7853e729f2628
 2025-11-29 12:21:06 +01:00
Ricardo Wurmus 782fd7172a gnu: r-missmethyl: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-missmethyl): Update to 1.44.0.
[propagated-inputs]: Add r-genomeinfodb.

Change-Id: I29f20ce9b63bd5739cbabb3ae39409f5f5b23d83
 2025-11-29 12:21:06 +01:00
Ricardo Wurmus 2fe66474b4 gnu: r-minfi: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.56.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I4d8496acfae4cace314ebc945635263162c1eadb
 2025-11-29 12:21:06 +01:00
Ricardo Wurmus efe308ba53 gnu: r-milor: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-milor): Update to 2.6.0.

Change-Id: I0a10bdfbb72e25126d27d393b57f65566d366417
 2025-11-29 12:21:05 +01:00
Ricardo Wurmus 976f53c3ce gnu: r-microbiome: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-microbiome): Update to 1.32.0.

Change-Id: Ib6550c0d1e8eb43dd8b2c43bc973bbcf90df2ece
 2025-11-29 12:21:05 +01:00
Ricardo Wurmus 0969e4406f gnu: r-mia: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-mia): Update to 1.18.0.
[native-inputs]: Add r-mediation.

Change-Id: I24483a7ba5f8302e6c3dd3b6ce6fcaf6ef3b5e15
 2025-11-29 12:21:05 +01:00
Ricardo Wurmus 8793067e6b gnu: r-bumpymatrix: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-bumpymatrix): Update to 1.18.0.

Change-Id: I694e80b1de54e93ec2df57c2034cffbaac05af39
 2025-11-29 12:21:05 +01:00
Ricardo Wurmus 679e502754 gnu: r-bumphunter: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.52.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.
[native-inputs]: Remove r-genomicranges; add r-genomeinfodb.

Change-Id: Iafdab98fb1f3b74f5caf00199f739eb6533c2073
 2025-11-29 12:21:05 +01:00
Ricardo Wurmus 98a4a816d0 gnu: r-siggenes: Update to 1.84.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.84.0.

Change-Id: Ia2af2b04583c793960fd3ac2856dec8514fccbe4
 2025-11-29 12:21:05 +01:00
Ricardo Wurmus b7a807b537 gnu: r-illuminaio: Update to 0.52.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.52.0.

Change-Id: I6b770b30a2bb4eab158f6da47ab401d30d97b982
 2025-11-29 12:21:05 +01:00
Ricardo Wurmus 1db87305ff gnu: r-geoquery: Update to 2.78.0. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.78.0.
[native-inputs]: Remove r-knitr; add r-quarto.

Change-Id: I8f7e4fd777d18f5a1798fff46fe8053eeec6ca5b
 2025-11-29 12:21:05 +01:00
Ricardo Wurmus 372600be6a gnu: r-scone: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.34.0.

Change-Id: I8baf2c9f9f4c9ee0a5abf92e748747b0e9959673
 2025-11-29 12:21:05 +01:00
Ricardo Wurmus 1c233955e9 gnu: r-scdd: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.34.0.

Change-Id: I0dff344a9ac9ed84637086c1102a8373970279b5
 2025-11-29 12:21:04 +01:00
Ricardo Wurmus 293a21f260 gnu: r-noiseq: Update to 2.54.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.54.0.

Change-Id: Ib7df7afae857a31615af7f8b9f0eb9801b6ef034
 2025-11-29 12:21:04 +01:00
Ricardo Wurmus c1a79ebfea gnu: r-sangerseqr: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-sangerseqr): Update to 1.46.0.

Change-Id: Ia3a4d625ea6a5fc5223ffb0f6775387878c25a64
 2025-11-29 12:21:04 +01:00
Ricardo Wurmus fcd65ee498 gnu: r-monocle: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.38.0.

Change-Id: I4e18822e32a921d1ee628e3e98b758210b9b73f6
 2025-11-29 12:21:04 +01:00
Ricardo Wurmus 195790856a gnu: r-mast: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.36.0.

Change-Id: I157e258a3ae8015a162e7a270cd6d70be7703ba4
 2025-11-29 12:21:04 +01:00
Ricardo Wurmus 2e8a79026a gnu: r-batchelor: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.26.0.

Change-Id: I42e4de270304058efeb2a1bb531fb4cd9298e097
 2025-11-29 12:21:04 +01:00