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b50c966087b908e046da06e330c01e6d7a1ae9ca
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36223 Commits

Author SHA1 Message Date
Ricardo Wurmus
b50c966087 gnu: Add r-arrmdata. 
* gnu/packages/bioconductor.scm (r-arrmdata): New variable.
 2019-04-03 17:42:18 +02:00
Ricardo Wurmus
5622628fd1 gnu: Add r-progeny. 
* gnu/packages/bioconductor.scm (r-progeny): New variable.
 2019-04-03 17:42:18 +02:00
Ricardo Wurmus
2bdc88fce7 gnu: Add r-rbowtie2. 
* gnu/packages/bioconductor.scm (r-rbowtie2): New variable.
 2019-04-03 17:42:18 +02:00
Ricardo Wurmus
83546785b2 gnu: r-rcas: Add upstream name. 
* gnu/packages/bioinformatics.scm (r-rcas)[properties]: Add upstream name.
 2019-04-03 17:42:18 +02:00
Ricardo Wurmus
9800d859a7 gnu: Add r-zfpkm. 
* gnu/packages/bioconductor.scm (r-zfpkm): New variable.
 2019-04-03 17:42:18 +02:00
Ricardo Wurmus
6b12f21363 gnu: Add r-webbioc. 
* gnu/packages/bioconductor.scm (r-webbioc): New variable.
 2019-04-03 17:42:18 +02:00
Ricardo Wurmus
7b5101c5bf gnu: Add r-widgettools. 
* gnu/packages/bioconductor.scm (r-widgettools): New variable.
 2019-04-03 17:42:17 +02:00
Ricardo Wurmus
b9b8b447ec gnu: Add r-wiggleplotr. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): New variable.
 2019-04-03 17:42:17 +02:00
Ricardo Wurmus
8830664d61 gnu: Add r-wrench. 
* gnu/packages/bioconductor.scm (r-wrench): New variable.
 2019-04-03 17:42:17 +02:00
guy fleury iteriteka
807900804d gnu: gnu-mate-icon-theme-faenza: Update to 1.20.0. 
* gnu/packages/mate.scm (gnu-mate-icon-theme-faenza): Update to 1.20.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:10 +02:00
guy fleury iteriteka
1e4999de71 gnu: mate-polkit: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-polkit): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:10 +02:00
guy fleury iteriteka
4e5b1221e7 gnu: mate-system-monitor: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-system-monitor): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:08 +02:00
guy fleury iteriteka
b3dcbc0408 gnu: pluma: Update to 1.22.0. 
* gnu/packages/mate.scm (pluma): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:08 +02:00
guy fleury iteriteka
56689aa5fb gnu: engrampa: Update to 1.22.0. 
* gnu/packages/mate.scm (engrampa): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:08 +02:00
guy fleury iteriteka
b85d568203 gnu: eom: Update to 1.22.0. 
* gnu/packages/mate.scm (eom): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:08 +02:00
Guy fleury
24eee2c025 gnu: mate-utils: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-utils): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:08 +02:00
guy fleury iteriteka
d3440c5313 gnu: mate-screensaver: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-screensaver): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:07 +02:00
guy fleury iteriteka
5150ba6f17 gnu: mate-netbook: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-netbook): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:07 +02:00
guy fleury iteriteka
9c688deccc gnu: backgrounds: Update to 1.22.0. 
* gnu/packages/mate.scm (backgrounds): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:07 +02:00
guy fleury iteriteka
d96a83b883 gnu: mate-calc: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-calc): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:07 +02:00
guy fleury iteriteka
59c410dd3e gnu: mate-user-guide: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-user-guide): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:07 +02:00
guy fleury iteriteka
0e4c492d4d gnu: mate-control-center: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-control-center): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:05 +02:00
guy fleury iteriteka
4373626b5a gnu: caja-extensions: Update to 1.22.0. 
* gnu/packages/mate.scm (caja-extensions): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:05 +02:00
guy fleury iteriteka
98b81c2e9e gnu: atril: Update to 1.22.0. 
* gnu/packages/mate.scm (atril): Update to 1.22.0.
[arguments]<#:configure-flags>: Remove pre-GTK3 option.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:04 +02:00
guy fleury iteriteka
cca6216bfc gnu: marco: Update to 1.22.0. 
* gnu/packages/mate.scm (marco): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:04 +02:00
guy fleury iteriteka
296c42b9e8 gnu: caja: Update to 1.22.0. 
* gnu/packages/mate.scm (caja): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:04 +02:00
guy fleury iteriteka
da5ef2a085 gnu: mate-media: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-media): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:04 +02:00
guy fleury iteriteka
75a9f76066 gnu: mate-applets: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-applets): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:04 +02:00
guy fleury iteriteka
e568d8339b gnu: mate-panel: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-panel): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:04 +02:00
guy fleury iteriteka
45bafe5501 gnu: mate-menus: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-menus): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:03 +02:00
guy fleury iteriteka
a628389fa9 gnu: libmatekbd: Update to 1.22.0. 
* gnu/packages/mate.scm (libmatekbd): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:03 +02:00
guy fleury iteriteka
660aa5d9f8 gnu: libmatemixer: Update to 1.22.0. 
* gnu/packages/mate.scm (libmatemixer): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:00 +02:00
guy fleury iteriteka
541dfa45da gnu: mate-settings-daemon: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-settings-daemon): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:00 +02:00
guy fleury iteriteka
bc96f8c4a7 gnu: mate-session-manager: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-session-manager): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:00 +02:00
guy fleury iteriteka
27d4e820d1 gnu: mate-terminal: Update to 1.22.0 
* gnu/packages/mate.scm (mate-terminal): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:59 +02:00
guy fleury iteriteka
595abe8688 gnu: libmatewether: Update to 1.22.0. 
* gnu/packages/mate.scm (libmatewether): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:59 +02:00
guy fleury iteriteka
2dc975d7c0 gnu: mate-desktop: Update to 1.22.2. 
* gnu/packages/mate.scm (mate-desktop): Update to 1.22.0.
[inputs]: Add iso-codes.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:59 +02:00
guy fleury iteriteka
b465500686 gnu: mate-themes: Update to 3.22.19. 
* gnu/packages/mate.scm (mate-themes): Update to 3.22.19.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:59 +02:00
guy fleury iteriteka
80e8305146 gnu: mate-icon-theme: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-icon-theme): Update to 1.20.3.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:59 +02:00
guy fleury iteriteka
8b493c7cf0 gnu: mate-common: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-common): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:57 +02:00
Ricardo Wurmus
44e06f9cf3 gnu: Add brlaser. 
* gnu/packages/printers.scm (brlaser): New variable.
 2019-04-02 22:04:08 +02:00
Kei Kebreau
932d6e276b gnu: wxmaxima: Update to 19.03.1. 
* gnu/packages/maths.scm (wxmaxima): Update to 19.03.1.
 2019-04-02 14:45:22 -04:00
Leo Famulari
a6f9f18c7e gnu: livemedia-utils: Update to 2019.03.06. 
* gnu/packages/video.scm (livemedia-utils): Update to 2019-03-06.
[source]: Remove snippet.
 2019-04-02 14:44:14 -04:00
Leo Famulari
295197500f gnu: Syncthing: Update to 1.1.1. 
* gnu/packages/syncthing.scm (syncthing): Update to 1.1.1.
 2019-04-02 13:07:03 -04:00
Leo Famulari
9c1b4316dc gnu: Go standard crypto library: Update to 0.0.0-3.b7391e9 [security fixes]. 
Fixes a vulnerability in 'golang.org/x/crypto/salsa20' where, if more than 256
GiB of keystream is generated, or if the counter otherwise grows greater than 32
bits, the amd64 implementation will first generate incorrect output, and then
cycle back to previously generated keystream.

https://go.googlesource.com/crypto/+/b7391e95e576cacdcdd422573063bc057239113d

* gnu/packages/golang.scm (go-golang-org-x-crypto-bcrypt,
go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2,
go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20,
go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish,
go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-ed25519,
go-golang-org-x-crypto-ripemd160, go-golang-org-x-crypto-blake2s,
go-golang-org-x-crypto-sha3, go-golang-org-x-crypto-ssh-terminal): Update to
0.0.0-3.b7391e9.
(go-golang-org-x-crypto-blake2s)[propagated-inputs]: Add
go-golang-org-x-sys-cpu.
(go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2,
go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20,
go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish,
go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-ssh-terminal):
Inherit from go-golang-org-x-crypto-bcrypt.
 2019-04-02 13:07:03 -04:00
Leo Famulari
4a136536e8 gnu: Add go-golang-org-x-sys-cpu. 
* gnu/packages/golang.scm (go-golang-org-x-sys-cpu): New variable.
 2019-04-02 13:07:03 -04:00
Ludovic Courtès
af76c020bf linux-container: Make the guest UID and GID a parameter. 
* gnu/build/linux-container.scm (initialize-user-namespace): Add
 #:guest-uid and #:guest-gid parameters and honor them.
(run-container): Likewise.
(call-with-container): Likewise.
* tests/containers.scm ("call-with-container, user namespace, guest UID/GID"):
New test.
 2019-04-02 18:15:37 +02:00
Ricardo Wurmus
cbe40b8b24 gnu: pigx-scrnaseq: Use older loompy. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace
python-loompy with python-loompy-for-pigx-scrnaseq.
 2019-04-02 16:11:23 +02:00
Ricardo Wurmus
dc112a0fe2 gnu: Add python-loompy-for-pigx-scrnaseq. 
* gnu/packages/bioinformatics.scm (python-loompy-for-pigx-scrnaseq): New variable.
 2019-04-02 16:11:12 +02:00
Ricardo Wurmus
82cc117450 gnu: pigx-chipseq: Update to 0.0.40. 
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.40.
 2019-04-02 15:53:23 +02:00