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b8a02db5e9ee8e5644bcdd67d8d0fd762481df75
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8693 Commits

Author SHA1 Message Date
Ricardo Wurmus
1508dd68d1 gnu: r-pcatools: Update to 2.22.1. 
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.22.1.

Change-Id: Id61b5bd7a63d18652d62235d830723e8654b8488
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:30:23 +01:00
Ricardo Wurmus
e90b7a88b0 gnu: r-flames: Update to 2.4.2. 
* gnu/packages/bioconductor.scm (r-flames): Update to 2.4.2.

Change-Id: Id6bb3f280dcf8fdd595b2d8e9e6b1b21ebe13df7
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:30:22 +01:00
Ricardo Wurmus
ed1ea054c5 gnu: r-netgsa: Update to 4.0.7. 
* gnu/packages/bioconductor.scm (r-netgsa): Update to 4.0.7.
[propagated-inputs]: Remove r-org-hs-eg-db.

Change-Id: I3e40676dc5e4fdecf988c003d2dd2f338526e317
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:37 +01:00
Ricardo Wurmus
d7d5770b54 gnu: Add r-rarr. 
* gnu/packages/bioconductor.scm (r-rarr): New variable.

Change-Id: Ia302b53f601295663246e66b9587c427a6ffd926
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:27 +01:00
Ricardo Wurmus
4847b6e749 gnu: r-msnid: Disable one test. 
* gnu/packages/bioconductor.scm (r-msnid)[arguments]: Add phase
'disable-bad-tests.

Change-Id: I188a069530c1aa7da663b438a079b736866e8bb5
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:25 +01:00
Ricardo Wurmus
723d092168 gnu: r-tximeta: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.28.1.

Change-Id: Id10c5bdd793e8efcb051bce989fb06519bf0e739
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:25 +01:00
Ricardo Wurmus
9e64120bd3 gnu: r-bayesspace: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-bayesspace): Update to 1.20.2.

Change-Id: Ibec763f651410d4943e46abb2ea1e97870fa79cb
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:24 +01:00
Ricardo Wurmus
0cf641866f gnu: r-mscoreutils: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.22.1.

Change-Id: I6b53479c8388babf1fe039ce34770e9ef2f7f2db
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:23 +01:00
Ricardo Wurmus
18f562a346 gnu: r-sparsearray: Update to 1.10.8. 
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.10.8.

Change-Id: I4d9b5eba4dbc7efdb779770249fb0a904700fcd2
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:22 +01:00
Ricardo Wurmus
4957fe8545 gnu: r-h5mread: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-h5mread): Update to 1.2.1.

Change-Id: I5a794952dffa1440516c82daebf5ee2e655fff1d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:21 +01:00
Ricardo Wurmus
c18bab03af gnu: r-s4arrays: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.10.1.

Change-Id: Idd461cf7717c8d5ed2563c4649a0eb29254a1077
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:21 +01:00
Ricardo Wurmus
1f852c3ca5 gnu: r-bioccheck: Update to 1.46.3. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.46.3.

Change-Id: Ib223054930edbf8220b4fbffc0847e712ef14748
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:20 +01:00
Ricardo Wurmus
6cbb6a13ce gnu: r-ucsc-utils: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-ucsc-utils): Update to 1.6.1.

Change-Id: Idef0e80e438b58f47b272ecf1c1559070a5b3160
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:19 +01:00
Ricardo Wurmus
9953fd5c28 gnu: r-variancepartition: Update to 1.40.1. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.40.1.
[propagated-inputs]: Add r-reformulas.

Change-Id: Id6b3920b2d201249a55ccc7440e63b12039011a8
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:18 +01:00
Ricardo Wurmus
41e55358ff gnu: r-flowworkspace: Update to 4.22.1. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.22.1.

Change-Id: Ie25dc585234ca7f91fcbbc8782663eecd23e7f1a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:17 +01:00
Ricardo Wurmus
ea8f7de008 gnu: r-ggcyto: Update to 1.38.1. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.38.1.

Change-Id: Idb7f65900f13935b1e2195ab75107a24b38794c4
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:17 +01:00
Ricardo Wurmus
9f298503bd gnu: r-flowcore: Update to 2.22.1. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.22.1.

Change-Id: I39861ca4db2858cdf872124935860436eebb4d0c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:16 +01:00
Ricardo Wurmus
e72f0cdaa6 gnu: r-wppi: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.18.0.

Change-Id: I2cca7f805fd74973fdc2046ccaa151be8732248d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:15 +01:00
Ricardo Wurmus
7ca8b99a34 gnu: r-yapsa: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.36.1.

Change-Id: Ie96ba3c80116ca6174cc3b3265b220229b3c804d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:14 +01:00
Ricardo Wurmus
448dc86928 gnu: r-clusterprofiler: Update to 4.18.4. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.18.4.

Change-Id: I9672e94f8ff1d0c91a5464c9c69910983756d53e
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:13 +01:00
Ricardo Wurmus
9694b9e642 gnu: r-enrichplot: Update to 1.30.4. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.30.4.
[propagated-inputs]: Remove r-magrittr; add r-tidydr.

Change-Id: I87d3866091c21706dbeb2f0e5f3cbeee0169bbab
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:12 +01:00
Ricardo Wurmus
454c8a9693 gnu: r-fgsea: Update to 1.36.2. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.36.2.

Change-Id: If6e95a2a2d86a21533059b2e8d393ea99b0cd94a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:12 +01:00
Ricardo Wurmus
47a76c5c39 gnu: r-ggtree: Update to 4.0.4. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 4.0.4.

Change-Id: I30dd4c7202921e2985cdba14203af81a0999eb79
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:11 +01:00
Ricardo Wurmus
1dc8af9bce gnu: r-graph: Update to 1.88.1. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.88.1.

Change-Id: Ib9c224219e1cdfc88317dbd1ed603fbd5cf27737
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:10 +01:00
Ricardo Wurmus
10134e4001 gnu: r-zellkonverter: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.20.1.

Change-Id: I770fb48f3b4f86a41a47e71987b67c86f97bd8bc
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:09 +01:00
Ricardo Wurmus
6a8b446d0a gnu: r-tximport: Update to 1.38.2. 
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.38.2.

Change-Id: I2fbda6da6a535d56ea69f6e7a2937e5a3f838e62
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:08 +01:00
Ricardo Wurmus
6a6efb9d7c gnu: r-systempiper: Update to 2.16.3. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.16.3.

Change-Id: I7e8a52ebeb28d45b7ee2d4e85d1381f4a56cd916
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:08 +01:00
Ricardo Wurmus
725bc1fedd gnu: r-spectra: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.20.1.

Change-Id: I69f3974af0074b0237d2d02f7bb9096399ed5a3d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:07 +01:00
Ricardo Wurmus
3c5638193c gnu: r-transcriptr: Update to 1.38.3. 
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.38.3.
[propagated-inputs]: Remove r-e1071.

Change-Id: Ib4543931338d8faa6e93c181287f8aa3f2af6fdf
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:06 +01:00
Ricardo Wurmus
fa55e6d196 gnu: r-tcgautils: Update to 1.30.2. 
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.30.2.

Change-Id: Iaa3ec26078a51c715e417e01395feb11281fa0fc
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:05 +01:00
Ricardo Wurmus
e97d2001ef gnu: r-sesame: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-sesame): Update to 1.28.1.

Change-Id: I310b74b4403a66d797aad658706ebd0a508226b7
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:04 +01:00
Ricardo Wurmus
efe27722d5 gnu: r-rtracklayer: Update to 1.70.1. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.70.1.

Change-Id: I3de097129c278a8667323f23f001a0788dac8fec
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:04 +01:00
Ricardo Wurmus
2398047ab3 gnu: r-rhdf5: Update to 2.54.1. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.54.1.

Change-Id: I923a8119848614871fab5eef520a9e87ac71fd1a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:03 +01:00
Ricardo Wurmus
bfcf7ddabd gnu: r-rcy3: Update to 2.30.1. 
* gnu/packages/bioconductor.scm (r-rcy3): Update to 2.30.1.

Change-Id: I805ed3b33d5a51b02a8a8d2a376e23fdab8e53ad
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:02 +01:00
Ricardo Wurmus
e66218ee15 gnu: r-gsva: Update to 2.4.4. 
* gnu/packages/bioconductor.scm (r-gsva): Update to 2.4.4.
[propagated-inputs]: Remove r-delayedmatrixstats; add r-memuse.

Change-Id: Ibcef712b3af99d367a84a45461e041b3a3ba4980
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:01 +01:00
Ricardo Wurmus
66f68a6c91 gnu: r-genomicranges: Update to 1.62.1. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.62.1.

Change-Id: I63bc5e3e2d55227f6988f76c9ca2684eb501a703
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:00 +01:00
Ricardo Wurmus
e0b7dab6e0 gnu: r-genomeinfodb: Update to 1.46.2. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.46.2.

Change-Id: I68b54eec8c36cd149133f9c7827a6d544180529c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:00 +01:00
Ricardo Wurmus
dcf80d8d0e gnu: r-enhancedvolcano: Update to 1.28.2. 
* gnu/packages/bioconductor.scm (r-enhancedvolcano): Update to 1.28.2.
[propagated-inputs]: Add r-scales.

Change-Id: I5b32e6f2dfb78380dd053bc8fbae763c9a467133
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:28:59 +01:00
Ricardo Wurmus
78373459d3 gnu: r-edger: Update to 4.8.2. 
* gnu/packages/bioconductor.scm (r-edger): Update to 4.8.2.

Change-Id: Ie8020f24945f4f601d8ea054d9136eebffc1f0d1
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:28:58 +01:00
Ricardo Wurmus
fffa724b3b gnu: r-immapex: Update to 1.4.3. 
* gnu/packages/bioconductor.scm (r-immapex): Update to 1.4.3.

Change-Id: Ic2bb78f46701bd20818d0f85908a9f2dce9f80c1
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:28:57 +01:00
Ricardo Wurmus
b6f740f96f gnu: r-escape: Update to 2.6.2. 
* gnu/packages/bioconductor.scm (r-escape): Update to 2.6.2.

Change-Id: I27bb75063ae4a294bced8a65c5e2b0cd2d959d30
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:28:56 +01:00
Ricardo Wurmus
9329c0d4dc gnu: r-atena: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-atena): Update to 1.16.1.

Change-Id: I2ec9271dc5b01af0cf24a319082beb933d978882
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:28:55 +01:00
Ricardo Wurmus
22d964d40b gnu: r-anvil: Update to 1.22.3. 
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.22.3.

Change-Id: I53bcec395deb1cceb34646558c5a76b94140497e
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:28:55 +01:00
Ricardo Wurmus
a355b080e0 gnu: r-systempiperdata: Update to 2.14.2. 
* gnu/packages/bioconductor.scm (r-systempiperdata): Update to 2.14.2.

Change-Id: I204b83fdb779970833e35698ab00b5cf3097ac98
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:28:54 +01:00
Ricardo Wurmus
21e0bd0f6a gnu: r-reactome-db: Update to 1.95.0. 
* gnu/packages/bioconductor.scm (r-reactome-db): Update to 1.95.0.

Change-Id: Ie3095869415bf010a3071b0d4339d5f66c65c898
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:28:53 +01:00
Ricardo Wurmus
d2b0a27ac3 gnu: r-txdbmaker: Update to 1.6.2. 
* gnu/packages/bioconductor.scm (r-txdbmaker): Update to 1.6.2.
[properties]: Record one more package in updater-extra-native-inputs.

Change-Id: Ie25a9043e7b02ee75e619140fbf3289185209b99
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:28:52 +01:00
Ricardo Wurmus
37b9d1eef7 gnu: r-screpertoire: Update to 2.6.2. 
* gnu/packages/bioconductor.scm (r-screpertoire): Update to 2.6.2.
[arguments]: Disable more tests.

Change-Id: I0818c1220c08f7a9309f7106e1661ff6ea8a058b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:28:51 +01:00
Ricardo Wurmus
0a8302fac7 gnu: r-abn: Update to 3.1.13. 
* gnu/packages/bioconductor.scm (r-abn): Update to 3.1.13.

Change-Id: I8d47ad284fadc9eab77bfa4d2d4a3b6933fadd32
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:27:09 +01:00
Ricardo Wurmus
b8556421bc gnu: r-metap: Update to 1.13. 
* gnu/packages/bioconductor.scm (r-metap): Update to 1.13.

Change-Id: I081bc90a14d6c29793745010d810fefb2efe92a7
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:27:09 +01:00
Ricardo Wurmus
ea1ae54d67 gnu: r-mutoss: Update to 0.1-14. 
* gnu/packages/bioconductor.scm (r-mutoss): Update to 0.1-14.

Change-Id: I9abef0d88d82035fe70a0c5e7b33f2d0f8cff136
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:27:08 +01:00