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49713 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice
bead506555 gnu: s6-linux-init: Update to 1.0.4.0. 
* gnu/packages/skarnet.scm (s6-linux-init): Update to 1.0.4.0.
 2020-03-09 16:01:17 +01:00
Guillaume Le Vaillant
0ccc138517 gnu: Add spatialite-tools. 
* gnu/packages/geo.scm (spatialite-tools): New variable.
 2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant
133de9ab38 gnu: Add readosm. 
* gnu/packages/geo.scm (readosm): New variable.
 2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant
e8906d86ee gnu: spatialite-gui: Add missing input. 
* gnu/packages/geo.scm (spatialite-gui)[inputs]: Add libjpeg-turbo.
 2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant
3cf0a5dc53 gnu: gdal: Update to 3.0.4. 
* gnu/packages/geo.scm (gdal): Update to 3.0.4.
 2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant
9147d1216e gnu: proj: Update to 6.3.1. 
* gnu/packages/geo.scm (proj): Update to 6.3.1.
 2020-03-09 15:21:45 +01:00
Roel Janssen
4960c03d1d gnu: Add perl-math-vecstat. 
* gnu/packages/perl.scm (perl-math-vecstat): New variable.
 2020-03-09 15:18:13 +01:00
Roel Janssen
b4e1ca0675 gnu: python-semver: Fix build. 
* gnu/packages/python-xyz.scm: Add python-appdirs, python-distlib,
  python-importlib-metadata, python-filelock, and python-six to native-inputs
  in order to run the test suite.
 2020-03-09 14:50:35 +01:00
Roel Janssen
c0f6446579 gnu: Fix build of python-velocyto. 
* gnu/packages/bioinformatics.scm (python-velocyto): Add python-joblib to
  native-inputs to make the test suite run succesfully.
 2020-03-09 14:34:41 +01:00
Efraim Flashner
fb29d7d70c gnu: Add vim-asyncrun. 
* gnu/packages/vim.scm (vim-asyncrun): New variable.
 2020-03-09 14:45:38 +02:00
Efraim Flashner
61daf2dbc9 gnu: Add nyancat. 
* gnu/packages/toys.scm (nyancat): New variable.
 2020-03-09 14:31:25 +02:00
Roel Janssen
b6574660e3 gnu: Update python-statsmodels to 0.11.1. 
* gnu/packages/statistics.scm (python-statsmodels): Update to 0.11.1.
 2020-03-09 13:01:27 +01:00
Pierre Neidhardt
6dfc981a98 gnu: Add sycamore. 
* gnu/packages/lisp-xyz.scm (cl-sycamore, sbcl-sycamore): New variables.
 2020-03-09 10:55:46 +01:00
Pierre Neidhardt
698a34482a gnu: emacs-sly: Update to 20200228. 
* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 20200228.
 2020-03-09 09:42:04 +01:00
Ricardo Wurmus
c3b6d61df3 gnu: r-desolve: Update to 1.28. 
* gnu/packages/cran.scm (r-desolve): Update to 1.28.
 2020-03-09 08:51:40 +01:00
Ricardo Wurmus
103de43c67 gnu: r-umap: Update to 0.2.5.0. 
* gnu/packages/cran.scm (r-umap): Update to 0.2.5.0.
[native-inputs]: Add r-knitr.
 2020-03-09 08:51:40 +01:00
Ricardo Wurmus
ea20989d87 gnu: r-rcppannoy: Update to 0.0.16. 
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.16.
[native-inputs]: Remove r-knitr.
 2020-03-09 08:51:40 +01:00
Ricardo Wurmus
207ba868a3 gnu: r-quantmod: Update to 0.4-16. 
* gnu/packages/cran.scm (r-quantmod): Update to 0.4-16.
 2020-03-09 08:51:40 +01:00
Ricardo Wurmus
bcbcd17d45 gnu: r-vcd: Update to 1.4-6. 
* gnu/packages/cran.scm (r-vcd): Update to 1.4-6.
 2020-03-09 08:51:40 +01:00
Ricardo Wurmus
fec7f576b4 gnu: r-ggrepel: Update to 0.8.2. 
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.2.
 2020-03-09 08:51:36 +01:00
Christopher Baines
af96c1e0e4 services: cuirass: Allow passing extra command line options. 
This is so that the options supported by the service configuration don't have
to always be changed. Generally though all options should be explicitly
supported and documented, so this is mostly to facilitate experimentation.

* gnu/services/cuirass.scm (<cuirass-configuration>): Add an extra-options
field.
(cuirass-shepherd-service): Pass the extra options to the shepherd servvices.
* doc/guix.texi (Continuous Integration): Document it.
 2020-03-08 23:46:11 +00:00
Christopher Baines
d8ab68b929 services: guix-data-service: Allow passing extra options. 
This is so that the options supported by the service configuration don't have
to always be changed. Generally though all options should be explicitly
supported and documented, so this is mostly to facilitate experimentation.

* gnu/services/guix.scm (<guix-data-service-configuration>): Add extra-options
and extra-process-jobs-options to the record type.
(guix-data-service-shepherd-services): Handle these new configuration record
fields.
* doc/guix.texi (Guix Data Service): Document these new options.
 2020-03-08 23:35:03 +00:00
Christopher Baines
67d21e2b08 gnu: guix-data-service: Update to 0.0.1-18.18eb9df. 
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-18.18eb9df.
(inputs, native-inputs): Switch to using the Guile 3 package variants where
applicable.
 2020-03-08 23:35:00 +00:00
Jakub Kądziołka
94d57ba339 gnu: python-virtualenv: Update to 20.0.8. 
* gnu/packages/python-xyz.scm (python-virtualenv): Update to 20.0.8.
  [arguments]: Remove the now-redundant 'disable-failing-test phase.
  [native-inputs]: Add python-setuptools and python-setuptools-scm.
  [inputs]: Add python-{appdirs, distlib, filelock, six,
  importlib-metadata}.
 2020-03-09 00:20:49 +01:00
Jakub Kądziołka
6e79208954 gnu: python-xyz: Add python-filelock. 
* gnu/packages/python-xyz.scm (python-filelock): New variable.
 2020-03-09 00:20:47 +01:00
Jakub Kądziołka
f2a6483084 gnu: python-xyz: Add python-distlib. 
* gnu/packages/python-xyz.scm (python-distlib): New variable.
 2020-03-09 00:20:46 +01:00
Ricardo Wurmus
830eac9c27 gnu: ngless: Update to 1.1.0. 
* gnu/packages/bioinformatics.scm (ngless): Update to 1.1.0.
 2020-03-08 23:37:09 +01:00
Ricardo Wurmus
3f68f76eaf gnu: Add jack-select. 
* gnu/packages/music.scm (jack-select): New variable.
 2020-03-08 23:13:11 +01:00
Ricardo Wurmus
46a864e7c1 gnu: taxtastic: Update to 0.8.11. 
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.8.11.
[source]: Fetch from Github.
[arguments]: Build with default Python; add phases 'prepare-directory,
'python37-compatibility, and update 'check phase.
[propagated-inputs]: Replace Python 2 variants with Python 3 variants.
 2020-03-08 22:50:16 +01:00
Ludovic Courtès
d6d0e10b3d gnu: guile-next: Revert to 3.0.0. 
Guile 3.0.1 segfaults while building guix-system-tests.drv on
and "guile3.0-guix" on x86_64-linux.

* gnu/packages/guile.scm (guile-next): Revert to 3.0.0.
(guile-3.0):
 2020-03-08 22:15:54 +01:00
Roel Janssen
3d33ca27b2 gnu: Add perl-config-inifiles. 
* gnu/packages/perl.scm (perl-config-inifiles): New variable.
 2020-03-08 21:50:44 +01:00
Roel Janssen
d0ca79e53d gnu: Add perl-attribute-util. 
* gnu/packages/perl.scm (perl-attribute-util): New variable.
 2020-03-08 21:50:32 +01:00
Efraim Flashner
30acf2f959 gnu: Add font-opendyslexic. 
* gnu/packages/fonts.scm (font-opendyslexic): New variable.
(font-open-dyslexic): Mark as deprecated package.
 2020-03-08 22:42:33 +02:00
Ludovic Courtès
e5059c95aa gnu: beep: Remove dependency on GCC 8. 
* gnu/packages/terminals.scm (beep)[native-inputs]: Remove.
 2020-03-08 21:21:57 +01:00
Vincent Legoll
1d91680c84 gnu: beep: Update to 1.4.9. 
* gnu/packages/terminals.scm (beep): Update to 1.4.9.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-08 21:21:57 +01:00
Jack Hill
f6713b55a1 services: certbot: Add server option. 
* gnu/services/certbot.scm (certbot-configuration): Add server option.
(certbot-command): Use server option.
(certbot-actication): Use server option.
(certbot-nginx-server-configurations): Use server option.
* doc/guix.texi (Certificate Services): Document server option.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-08 21:21:57 +01:00
Brice Waegeneire
9ef37e81d6 system: Export 'operating-system' missing fields. 
* gnu/system.scm: Export 'operating-system-firmware',
'operating-system-keyboard-layout',
'operating-system-name-service-switch', 'operating-system-pam-services',
'operating-system-setuid-programs', 'operating-system-skeletons',
'operating-system-sudoers-file', 'operating-system-swap-devices'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-08 21:21:57 +01:00
Ludovic Courtès
1a30351bf3 gnu: guile-next: Update to 3.0.1. 
* gnu/packages/guile.scm (guile-3.0): Update to 3.0.1.  Use "mirror://" URL.
 2020-03-08 21:21:57 +01:00
Ricardo Wurmus
c32897b6e4 gnu: r-robust: Update to 0.5-0.0. 
* gnu/packages/statistics.scm (r-robust): Update to 0.5-0.0.
 2020-03-08 16:02:04 +01:00
Ricardo Wurmus
7b2acf1508 gnu: r-rapidjsonr: Update to 1.2.0. 
* gnu/packages/cran.scm (r-rapidjsonr): Update to 1.2.0.
 2020-03-08 16:02:04 +01:00
Ricardo Wurmus
dc30cc0300 gnu: r-atacseqqc: Update to 1.10.3. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3.
[native-inputs]: Add r-knitr.
 2020-03-08 16:02:04 +01:00
Hartmut Goebel
6434f9b634 gnu: Reword and extend descriptions for some KDE packages. 
* gnu/packages/kde-multimedia.scm (libkcompatdisc)[description]: Extend.
* gnu/packages/kde-pim.scm (akonadi-search, kalarmcal, kdemailimporter,
  kdepim-apps-libs, kidentitymanagement, kldap, kmailtransport, kmbox, kmime,
  kontactinterface, kpimtextedit)[description]: Reword and extend.
  (ktnef, kpimcommon, libkdepim)[synopsis, description]: Reword and extend.
  (kmailtransport)[synopsis]: Fix space.
* gnu/packages/kde-systemtools.scm (khelpcenter)[description]: Extend.
 2020-03-08 14:06:00 +01:00
Martin Becze
1eb3b2b666 gnu: Add emacs-org-journal. 
* gnu/packages/emacs-xyz.scm (emacs-org-journal): New Variable.
 2020-03-08 11:19:16 +01:00
Roel Janssen
e2ca10a46f gnu: python-umap-learn: Fix build. 
* gnu/packages/machine-learning.scm (python-umap-learn): Add python-joblib to
  run the test suite.
 2020-03-08 10:20:22 +01:00
Maxim Cournoyer
5fdc5b2d57 services: nfs: Run rpc.mountd in foreground. 
Fixes <https://bugs.gnu.org/39708>.

Shepherd doesn't keep track of processes that fork themselves and would
disable the process after restarting it a couple times.

* gnu/services/nfs.scm (nfs-shepherd-services): Invoke rpc.mountd with the
'--foreground' option.
 2020-03-08 00:26:02 -05:00
Leo Famulari
be3908fa14 gnu: QEMU: Fix CVE-2020-8608. 
* gnu/packages/patches/qemu-CVE-2020-8608.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
 2020-03-07 16:37:25 -05:00
Lars-Dominik Braun
83ac7cb42b gnu: brotli: Remove package 
Same package is provided by google-brotli.

* gnu/packages/compression.scm (brotli): Redefine as a deprecated alias
for "google-brotli".

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-07 22:30:06 +01:00
Lars-Dominik Braun
d9476a3700 gnu: woff2: Update to 1.0.2 
* gnu/packages/fontutils.scm (woff2): Update to 1.0.2 and switch to cmake
* gnu/packages/patches/woff2-libbrotli.patch: Remove
* gnu/local.mk (dist_patch_DATA): Remove patch

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-07 22:30:06 +01:00
Vincent Legoll
74ff08e6b8 gnu: ccache: Fix indentation 
* gnu/packages/ccache.scm (ccache): Fix indentation

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-07 22:30:06 +01:00
Vincent Legoll
9eb456b8c7 gnu: ccache: Update to 3.7.7. 
gnu/packages/ccache.scm (ccache): Update to 3.7.7, update homepage
to ccache.dev, get source code from github, remove fortran 77 from
description.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-07 22:30:06 +01:00