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141426 Commits

Author SHA1 Message Date
Nicolas Graves bfdf6a85b8 gnu: python-bed-reader: Improve phases' style. 
* gnu/packages/bioinformatics.scm (python-bed-reader)
[arguments]{phases}: Improve phases 'install-python-library and
'check-python with site-packages procedure.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-04-24 04:53:41 +01:00
Nicolas Graves 7118f9fecc gnu: chirp: Update to 0.4.0-4.bc27f66. 
* gnu/packages/radio.scm (chirp): Update to 0.4.0-4.bc27f66.
[build-system]: Switch to pyproject.
[native-inputs]: Remove python-mox3, python-tox.  Add
python-setuptools, python-wheel.
[inputs]: Replace python-lark-parser by python-lark.  Remove
python-six.
[arguments]{test-flags}: Ignore failing tests.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-04-24 04:53:41 +01:00
Nicolas Graves 6c134ae279 gnu: python-suds: Fix dist-info. 
* gnu/packages/python-web.scm (python-suds)
[arguments]{phases}: Add phase 'add-custom-dist-info.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-04-24 04:53:41 +01:00
Nicolas Graves dbc331397e gnu: Add python-lark. 
* gnu/packages/python-xyz.scm (python-lark): New variable.
(python-lark-parser): Inherit from python-lark and update to 0.12.0.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-04-24 04:53:40 +01:00
John Kehayias 61ba713470 gnu: syncthing-gtk: Update to 0.9.4.4-2.1e84f33. 
Fixes the runtime failure:
AttributeError: module 'gettext' has no attribute 'bind_textdomain_codeset'.

* gnu/packages/syncthing.scm (syncthing-gtk): Update to 0.9.4.4-2.1e84f33.

Change-Id: I37d0389a194b6c0d83db859a7cf7e2bdb4f50c54
 2025-04-23 23:49:38 -04:00
Maxim Cournoyer 3c8427ca41 gnu: gnome-calendar: Update to 47.0. 
* gnu/packages/gnome.scm (gnome-calendar): Update to 47.0.

Fixes: bug#78015
Change-Id: Iecf890da7d5e81285bdf43874e0add210138dda1
 2025-04-24 10:43:40 +09:00
Maxim Cournoyer 0e78b616d7 gnu: evolution-data-server: Update to 3.56.1. 
* gnu/packages/gnome.scm (evolution-data-server): Update to 3.56.1.

Change-Id: I7f6c5c43bd67de9ca7aaa1990faf54e5049c1a30
 2025-04-24 10:43:40 +09:00
Leo Famulari 16787a736c gnu: linux-libre 6.12: Update to 6.12.24. 
* gnu/packages/linux.scm (linux-libre-6.12-version): Update to 6.12.24.
(linux-libre-6.12-pristine-source, deblob-scripts-6.12): Update hashes.

Change-Id: Iee3d982901e3cd69aca34824c0c32d124c81af6f
 2025-04-23 19:29:02 -04:00
Leo Famulari 6147524858 gnu: linux-libre: Update to 6.13.12. 
* gnu/packages/linux.scm (linux-libre-6.13-version): Update to 6.13.12.
(linux-libre-6.13-pristine-source, deblob-scripts-6.13): Update hashes.

Change-Id: I3139dac1e696850c1d4b9888c5531cf47f408bbd
 2025-04-23 19:29:02 -04:00
Sharlatan Hellseher 5cf0a65c81 gnu: python-ddt: Move python-check. 
* gnu/packages/python-xyz.scm (python-ddt): Move from here ...
* gnu/packages/python-check.scm: ... to here.

Change-Id: If098b89d4abb795db7dc9756a76060e2e6ae11cc
 2025-04-23 23:12:23 +01:00
Sharlatan Hellseher ac7e4d826e gnu: python-bandit: Move to python-check. 
* gnu/packages/openstack.scm (python-bandit): Move from here ...
* gnu/packages/python-check.scm: ... to here.

Change-Id: I8e10caee78a1d5922626f30d48cfe2bbe6b2ab2e
 2025-04-23 23:12:23 +01:00
Sharlatan Hellseher 0bb526a573 gnu: python-stestr: Update to 4.1.0. 
* gnu/packages/python-check.scm (python-stestr): Update to 4.1.0.
[build-system]: Switch to pyproject.
[arguments] <tests?>: Enable them.
<phases>: Use custom 'check.
[propagated-inputs]: Remove python-future; add python-tomlkit.
[native-inputs]: Remove python-pbr; add python-ddt, python-iso8601,
python-setuptools, and python-wheel.

Change-Id: I058fb17c46c91a4e21f0797544a4a02e3c706b05
 2025-04-23 23:12:23 +01:00
Sharlatan Hellseher 3f3478bd61 gnu: python-bandit: Enable tests. 
* gnu/packages/openstack.scm (python-bandit): Update to 1.8.3.
[arguments] <phases>: Use custom 'check.
[propagated-inputs]: Add python-gitpython, python-jschema-to-python, and
python-sarif-om.  [native-inputs]: Add python-fixtures, python-stestr,
python-testscenarios, and python-testtools.

Change-Id: I0cc1b30635045e3161d14372dca24aa844050652
 2025-04-23 23:12:23 +01:00
Daniel Ziltener 721aa8d2a7 gnu: python-bandit: Update to 1.8.3. 
* gnu/packages/openstack.scm (python-bandit): Update to 1.8.3.
[build-system]: Switch to pyproject.
[native-inputs]: Remove python-pbr; add python-beautifulsoup4,
python-setuptools, and python-wheel.
[propagated-inputs]: Remove python-gitpython and python-six; add
python-rich.

Change-Id: I16880d5fb5688c103b2e176a0ffc78ff420c7e19
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-04-23 23:12:22 +01:00
Cayetano Santos 3f61193716 gnu: offlineimap3: Update to 8.0.0-0.db34745. 
* gnu/packages/mail.scm (offlineimap3): Update to 8.0.0-0.db34745. Use
G-expressions.
[build-system]: Switch to pyproject.
[native-inputs]: Add python-setuptools.
[inputs]: Add python-urlllib3-1.25.

Change-Id: Ic000dd21aeb1ae98c6af9335b8bda93ffeb1e959
Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-04-23 23:12:22 +01:00
Cayetano Santos fc718a5df9 gnu: Add python-urllib3-1.25. 
* gnu/packages/python-web.scm (python-urllib3-1.25): New variable.

Change-Id: I28ea55b42dee708ad8d15e51d6b8e8a5ec2f392f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-04-23 23:12:22 +01:00
Nicolas Graves 3901b539d2 gnu: python-omero-py: Update to 5.20.0. 
* gnu/packages/python-xyz.scm (python-omero-py): Update to 5.20.0.
  [arguments]<test-flags>: Ignore collection of some tests (which should
  be fixed when updating to numpy@2).
  [native-inputs]: Add python-portalocker. Update omero-blitz to 5.8.2.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-04-23 23:12:22 +01:00
Nicolas Graves 03c4dc54a7 gnu: python-zeroc-ice-3.6: Fix build with Python@3.11. 
* gnu/packages/python-xyz.scm (python-zeroc-ice-3.6)
  [source]: Add patch.
* gnu/packages/patches/python-zeroc-ice-3.6.5-python-3.11-support.patch:
  Add patch.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-04-23 23:12:22 +01:00
Sharlatan Hellseher 695187c45a gnu: python-ipyparallel: Update to 9.0.1. 
* gnu/packages/python-xyz.scm (python-ipyparallel-bootstrap): Update to 9.0.1.
[build-system]: Switch to pyproject.
[native-inputs]: Add python-hatchling.
(python-ipyparallel) [arguments] <phases>: Use default 'check.
[native-inputs]: Inherit from python-ipyparallel-bootstrap; remove
python-pytest-cov.

Change-Id: I2200d2757f36d566b57ba1ac0368cb5f9751d2ba
 2025-04-23 23:12:22 +01:00
Sharlatan Hellseher 97a6185965 gnu: python-pytest-tornado: Use pyproject. 
* gnu/packages/python-check.scm (python-pytest-tornado) [build-system]:
Switch to pyproject.
[native-inputs]: Add python-wheel.

Change-Id: I3ce4fb379b78ac96c5bacc31cdedd892896d80af
 2025-04-23 23:12:22 +01:00
Leo Famulari 159969a56b Revert botched kernel updates for 6.13.12 and 6.12.24. 
This reverts commits 4bef98b1f327f747ee6904d5a38e00ad6839e800^..aae839942e879759cd34fd4cdb6dcb6cdb3607d3

Change-Id: Idf2864c03b175a28418fc7ef40cea321f4f66cbc
 2025-04-23 17:31:39 -04:00
Leo Famulari aae839942e gnu: linux-libre 6.12: Update to 6.12.24. 
* gnu/packages/linux.scm (linux-libre-6.12-version): Update to 6.12.24.
(linux-libre-6.12-pristine-source): Update hash.

Change-Id: Iee3d982901e3cd69aca34824c0c32d124c81af6f
 2025-04-23 17:15:22 -04:00
Leo Famulari 4bef98b1f3 gnu: linux-libre: Update to 6.13.12. 
* gnu/packages/linux.scm (linux-libre-6.13-version): Update to 6.13.12.
(linux-libre-6.13-pristine-source): Update hash.

Change-Id: I3139dac1e696850c1d4b9888c5531cf47f408bbd
 2025-04-23 17:15:14 -04:00
jgart 6cf0f3cbb6 gnu: Add emacs-denote-sequence. 
* gnu/packages/emacs-xyz.scm (emacs-denote-sequence): New variable.

Change-Id: I50f0d5642775b2200873e3d0c274e0237e515846
 2025-04-23 14:27:37 -05:00
jgart 74e53845e1 gnu: Add emacs-denote-org. 
* gnu/packages/emacs-xyz.scm (emacs-denote-org): New variable.

Change-Id: Iaa14d1610f3e3b34acd18ed9a36f41a422ab0ac9
 2025-04-23 14:27:37 -05:00
jgart 171e37e2cd gnu: Add emacs-denote-markdown. 
* gnu/packages/emacs-xyz.scm (emacs-denote-markdown): New variable.

Change-Id: Icb2ce8f720068ab708148e2cc5ac99091eb5d99b
 2025-04-23 14:27:28 -05:00
jgart 57b187f12d gnu: Add emacs-denote-silo. 
* gnu/packages/emacs-xyz.scm (emacs-denote-silo): New variable.

Change-Id: Id2bfbeffac7d821d892d882c0f8665a66c672093
 2025-04-23 14:14:00 -05:00
jgart 77a17708ea gnu: Add emacs-denote-journal. 
* gnu/packages/emacs-xyz.scm (emacs-denote-journal): New variable.

Change-Id: Iaeba922afc725a922d78d079fe497ea28213331f
 2025-04-23 14:08:01 -05:00
Michael Ford 6b3d08cc50 gnu: moreutils: Update to 0.70. 
* gnu/packages/moreutils.scm (moreutils): Update to 0.70.

Signed-off-by: Greg Hogan <code@greghogan.com>
 2025-04-23 15:13:29 +00:00
Maxim Cournoyer d9831cd439 gnu: mia: Fix build. 
* gnu/packages/patches/mia-gcc11.patch: New file.
* gnu/packages/patches/mia-openexr3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/image-processing.scm (mia) [patches]: Apply them.
[inputs]: Replace hdf5 with hdf5-1.10.  Add lapack.  Replace openxr-2 with
openxr.  Move doxygen to...
[native-inputs]: ... here.

Fixes: bug#47561
Reported-by: Ludovic Courtès <ludo@gnu.org>
Change-Id: I337df14370a589c7c15d15bcc69b948b43c2e61b
 2025-04-23 22:24:15 +09:00
Maxim Cournoyer 89de2cb1ef gnu: itpp: Add LAPACK support and use gexps. 
This is needed to run some functions needed by the test suite of mia, for
example.

* gnu/packages/maths.scm (itpp) [arguments]: Use gexps.
[inputs]: Add lapack.
[native-inputs]: Remove labels.

Change-Id: I58b31272ceaf5bdfbbcc0f769ab2418c4b7613d3
 2025-04-23 22:24:15 +09:00
phodina 699ce22ed8 gnu: Add postmarketos-tweaks. 
* gnu/packages/gnome.scm (postmarketos-tweaks): New variable.

Co-authored-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Change-Id: I958af7a2ada17486ad69e0e812908c30c88cee60
 2025-04-23 20:51:03 +09:00
Roman Scherer 1205cffa7f gnu: hetznercloud-cli: Update to 1.50.0. 
* gnu/packages/admin.scm (hetznercloud-cli): Update to 1.50.0.

Change-Id: I1e7a4a0acf99a87215d39d51fde4075312492669
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2025-04-23 12:25:46 +02:00
Petr Hodina e042751c32 gnu: Add megapixels. 
* gnu/packages/gnome.scm (megapixels): New variable.

Change-Id: I686718a8d75913c7e329cb29f4eb227d15b05ba5
Co-authored-by: Petr Hodina <phodina@protonmail.com>
 2025-04-23 17:27:42 +09:00
Maxim Cournoyer 1a2d6e7c76 gnu: Add libmegapixels. 
* gnu/packages/gnome-xyz.scm (libmegapixels): New variable.

Change-Id: Id2e5c921a35611d053704b394baf4f747f6d23e8
 2025-04-23 17:27:42 +09:00
Maxim Cournoyer 238ce45f13 gnu: python-screenkey: Update to 1.5. 
Sadly, it still fails to run, apparently due to
<https://gitlab.com/screenkey/screenkey/-/issues/166>.

* gnu/packages/python-xyz.scm (python-screenkey): Update to 1.5.
[phases] {fix-dlopen-paths}: Use search-input-file.
[inputs]: Sort.  Add python-dbus-python.

Change-Id: I9a41e03db74ba3e0254452f02108bab739d1f93e
 2025-04-23 16:24:54 +09:00
Zheng Junjie 3d33f6ea88 gnu: jamesdsp: Fix build. 
* gnu/packages/patches/jamesdsp-fix-bulid-on-pipewire-1.4.0.patch: New file.
* gnu/packages/audio.scm (jamesdsp): Add it.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: Ibae4956b3b97f785bb548ccd73d034834c7b573f
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2025-04-23 14:27:01 +09:00
Zheng Junjie c8924384ba gnu: easyeffects: Update to 7.2.3. 
* gnu/packages/audio.scm (easyeffects): Update to 7.2.3.

Change-Id: Ieb14488ecebc96f9e5df37fcd5e91148a79cf036
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2025-04-23 14:27:01 +09:00
Zheng Junjie 85a7fb019c gnu: wireplumber: Update to 0.5.8. 
* gnu/packages/linux.scm (wireplumber): Update to 0.5.8.

Change-Id: If6a35d569b04359526b20e868f3e383c0d59eeb3
Signed-off-by: Zheng Junjie <z572@z572.online>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2025-04-23 14:27:01 +09:00
Zheng Junjie 366af125a3 gnu: pipewire: Update to 1.4.0. 
* gnu/packages/linux.scm (pipewire): Update to 1.4.0.

Change-Id: Ieb6881fecba7c1f7d956eb78e9b170b123e2b8d5
Signed-off-by: Zheng Junjie <z572@z572.online>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2025-04-23 14:27:01 +09:00
Maxim Cournoyer b12d44dd5e gnu: libssh: Enable tests. 
* gnu/packages/ssh.scm (libssh) [arguments]
<#:configure-flags>: Add "-DUNIT_TESTING=ON".
<#:phases>: New argument.
[native-inputs]: Add cmocka.

Change-Id: Ibe0f8f7b9bff969c9483dcd8c6b7635d91e62feb
 2025-04-23 11:25:18 +09:00
Sharlatan Hellseher 15562902da gnu: packages/python-check: Sort variables. 
* gnu/packages/python-check.scm (python-pyannotate,
python-pytest-repeat, python-pytest-sanic, python-pytest-shutil): Sort
variables alphabetically.

Change-Id: Ia33663100d8a50a0ca5f852b75969548288efdd3
 2025-04-23 00:08:16 +01:00
Sharlatan Hellseher c9eb98db9b gnu: packages/python-check: Sort variables. 
* gnu/packages/python-check.scm (python-mockito, python-nbmake,
python-nox, python-pycotap, python-pytest-checkdocs,
python-pytest-remotedata python-pytest-services): Sort variables
alphabetically.

Change-Id: If5cf7f31c7e48bec4031585ecf1786e1b5334713
 2025-04-23 00:03:51 +01:00
Sharlatan Hellseher e48c620431 gnu: packages/python-check: Sort variables. 
* gnu/packages/python-check.scm (python-mypy, python-mypy-minimal,
python-nptyping, python-pytest-astropy-header, python-pytest-check,
python-pytest-cython, python-pytest-rerunfailures,
python-pytest-rerunfailures-13, python-pytest-subprocess ): Sort
variables alphabetically.

Change-Id: I75751c53e4906a60cc4535ef7675ee75f924b061
 2025-04-22 23:54:32 +01:00
Sharlatan Hellseher 615ada6b28 gnu: packages/python-check: Sort variables. 
* gnu/packages/python-check.scm (python-mypy-extensions,
python-pandas-vet, python-pytest-flask, python-pytest-order,
python-pytest-pycodestyle, python-pytest-shard): Sort variables
alphabetically.

Change-Id: If576eeeb7657da0284314b7991e845488f936bb7
 2025-04-22 23:54:32 +01:00
Sharlatan Hellseher b12ed9b4b7 gnu: packages/python-check: Sort variables. 
* gnu/packages/python-check.scm (python-nbval, python-pytest-astropy,
python-pytest-csv, python-pytest-isort, python-pytest-parawtf,
python-pytest-socket, python-pytest-vcr): Sort variables alphabetically.

Change-Id: I910e56d7b8aa39b2744c51ad1f41278feb5901de
 2025-04-22 23:54:32 +01:00
Sharlatan Hellseher 6d114e63eb gnu: packages/python-check: Sort variables. 
* gnu/packages/python-check.scm (python-memory-profiler,
python-pytest-aiohttp, python-pytest-click, python-pytest-flakefinder,
python-pytest-snapshot, python-pytest-tornasync, python-sybil): Sort
variables alphabetically.

Change-Id: I82896437b4bd14c4b70f49884daa7eec9288f118
 2025-04-22 23:54:32 +01:00
Sharlatan Hellseher 126c272acf gnu: packages/python-check: Sort variables. 
* gnu/packages/python-check.scm (python-httmock,
python-inline-snapshot, python-line-profiler, python-pytest-benchmark,
python-pytest-celery, python-pytest-flake8): Sort variables
alphabetically.

Change-Id: Ifd3ea1c34973794eb43cc9ebf31c7e7ea33b49a0
 2025-04-22 23:54:32 +01:00
Sharlatan Hellseher 96cebe2c98 gnu: packages/python-check: Sort variables. 
* gnu/packages/python-check.scm (python-pytest-console-scripts,
python-pytest-cram, python-pytest-doctest-custom, python-pytest-env,
python-pytest-fixture-config, python-pytest-httpx,
python-pytest-openfiles, python-re-assert, python-tappy): Sort variables
alphabetically.

Change-Id: Ie8c00edde98f3fa8a0608c7def126caa351a1907
 2025-04-22 23:54:32 +01:00
Sharlatan Hellseher 134dbb1924 gnu: packages/python-check: Sort variables. 
* gnu/packages/python-check.scm (python-hiro, python-pylama,
python-pytest-black, python-pytest-freezer, python-pytest-qt,
python-pytest-tornado, python-testfixtures): Sort variables
alphabetically.

Change-Id: I5d784c567fdca631362cd31eba9f0e07a6519a8f
 2025-04-22 23:54:28 +01:00