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bfe3fdbc75a1412ccac46fc2ca750fa42e7f70fe
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2821 Commits

Author SHA1 Message Date
Ricardo Wurmus
9238ba5874 gnu: r-affycompatible: Build reproducibly. 
* gnu/packages/bioconductor.scm (r-affycompatible)[arguments]: Sort XML
elements before generating R code from them.
 2022-07-15 00:07:42 +02:00
Ricardo Wurmus
602cf66c79 gnu: Add r-dittoseq. 
* gnu/packages/bioconductor.scm (r-dittoseq): New variable.
 2022-07-04 13:48:58 +02:00
Ricardo Wurmus
3bb39fc370 gnu: r-tcgabiolinks: Update to 2.24.3. 
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.3.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
af06365a3e gnu: r-bionetstat: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.1.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
26981da96b gnu: r-bgeedb: Update to 2.22.3. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.3.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
5f03154c15 gnu: r-ggbio: Update to 1.44.1. 
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.1.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
11f30bfa3d gnu: r-rsubread: Update to 2.10.4. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.4.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
0a5a06ed24 gnu: r-biosigner: Update to 1.24.2. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.24.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
fbb6489abd gnu: r-ropls: Update to 1.28.2. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.28.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
4aabb20226 gnu: r-genomicscores: Update to 2.8.2. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.2.
[propagated-inputs]: Add r-httr.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
b7a5534e61 gnu: r-clusterprofiler: Update to 4.4.4. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.4.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
a17b7aabfd gnu: r-batchelor: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.3.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
7ff0669cee gnu: r-matrixgenerics: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.1.
 2022-07-02 23:56:10 +02:00
Ricardo Wurmus
605eda07df gnu: r-zellkonverter: Update to 1.6.3. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.3.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
febec55f57 gnu: r-simplifyenrichment: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.1.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
c4113d3035 gnu: r-rtracklayer: Update to 1.56.1. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.1.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
5298b57d56 gnu: r-organismdbi: Update to 1.38.1. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.1.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
4e6026031a gnu: r-limma: Update to 3.52.2. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.2.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
103d4d918f gnu: r-ensembldb: Update to 2.20.2. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.2.
 2022-07-02 23:56:09 +02:00
Ricardo Wurmus
01790a6cd6 gnu: r-restfulr: Update to 0.0.15. 
* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.15.
 2022-07-02 23:56:04 +02:00
Mădălin Ionel Patrașcu
ec23d7caa8 gnu: Add r-antiprofiles. 
* gnu/packages/bioconductor.scm (r-antiprofiles): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-07-01 10:28:22 +02:00
Mădălin Ionel Patrașcu
3109d4a30e gnu: Add r-annmap. 
* gnu/packages/bioconductor.scm (r-annmap): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-07-01 10:28:21 +02:00
Mădălin Ionel Patrașcu
f004033b47 gnu: Add r-anf. 
* gnu/packages/bioconductor.scm (r-anf): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-07-01 10:28:21 +02:00
Mădălin Ionel Patrașcu
4c294ae7fb gnu: Add r-anaquin. 
* gnu/packages/bioconductor.scm (r-anaquin): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-07-01 10:28:21 +02:00
Mădălin Ionel Patrașcu
c6d792f34c gnu: Add r-amaretto. 
* gnu/packages/bioconductor.scm (r-amaretto): New variable.
 2022-06-30 15:35:27 +02:00
Mădălin Ionel Patrașcu
dd74da6190 gnu: Add r-amountain. 
* gnu/packages/bioconductor.scm (r-amountain): New variable.
 2022-06-30 15:29:45 +02:00
Ricardo Wurmus
6e333213d3 gnu: r-metap: Update to 1.8. 
* gnu/packages/bioconductor.scm (r-metap): Update to 1.8.
[propagated-inputs]: Add r-mathjaxr and r-qqconf.
 2022-06-30 15:17:58 +02:00
Ricardo Wurmus
fce6aeba7e gnu: r-nbpseq: Update to 0.3.1. 
* gnu/packages/bioconductor.scm (r-nbpseq): Update to 0.3.1.
 2022-06-13 14:21:46 +02:00
Ricardo Wurmus
37378829bc gnu: r-restfulr: Update to 0.0.14. 
* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.14.
 2022-06-13 14:21:42 +02:00
Ricardo Wurmus
0006a9a83a gnu: Add r-deconvr. 
* gnu/packages/bioconductor.scm (r-deconvr): New variable.
 2022-06-12 22:51:23 +02:00
Ricardo Wurmus
541823b318 gnu: r-hdf5array: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.1.
 2022-06-12 11:16:30 +02:00
Ricardo Wurmus
a12ec47cbd gnu: r-universalmotif: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.14.1.
 2022-06-12 11:16:30 +02:00
Ricardo Wurmus
a76b657d93 gnu: r-rsubread: Update to 2.10.2. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.2.
 2022-06-12 11:16:30 +02:00
Ricardo Wurmus
41435e0e1c gnu: r-clusterprofiler: Update to 4.4.2. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.2.
 2022-06-12 11:16:29 +02:00
Ricardo Wurmus
640b45d73c gnu: r-monocle: Update to 2.24.1. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.24.1.
 2022-06-12 11:16:29 +02:00
Ricardo Wurmus
8ed8c8b8da gnu: r-chippeakanno: Update to 3.30.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.30.1.
 2022-06-12 11:16:29 +02:00
Ricardo Wurmus
46aab4d33d gnu: r-zellkonverter: Update to 1.6.2. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.2.
 2022-06-12 11:16:28 +02:00
Ricardo Wurmus
7a344aa9e2 gnu: r-keggrest: Update to 1.36.2. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.2.
 2022-06-12 11:16:28 +02:00
Ricardo Wurmus
1ecac84c73 gnu: r-genomicfeatures: Update to 1.48.3. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.3.
 2022-06-12 11:16:28 +02:00
Ricardo Wurmus
15e26f97d9 gnu: r-biocparallel: Update to 1.30.3. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.30.3.
[propagated-inputs]: Add r-codetools.
 2022-06-12 11:16:28 +02:00
Ricardo Wurmus
f5899fe58b gnu: r-deepsnv: Update to 1.42.1. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.1.
 2022-06-12 11:16:23 +02:00
Ricardo Wurmus
bfcae1efbb gnu: r-batchelor: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.1.
 2022-05-30 15:16:35 +02:00
Ricardo Wurmus
e640da33f3 Merge branch 'wip-r' 2022-05-29 11:49:03 +02:00
Ricardo Wurmus
89e9262012 gnu: r-bsgenome-hsapiens-ucsc-hg19-masked: Update to 1.3.993. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked): Update to 1.3.993.
 2022-05-29 11:44:09 +02:00
Mădălin Ionel Patrașcu
a5f4c03df1 gnu: Add r-scmap. 
* gnu/packages/bioconductor.scm (r-scmap): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-05-29 00:43:05 +02:00
Ricardo Wurmus
66bfe55848 gnu: Add r-msdata. 
* gnu/packages/bioconductor.scm (r-msdata): New variable.
 2022-05-28 23:19:48 +02:00
Ricardo Wurmus
79158a5624 gnu: r-tcgabiolinksgui-data: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): Update to 1.16.0.
 2022-05-28 23:19:48 +02:00
Ricardo Wurmus
9d538de266 gnu: r-curatedtcgadata: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.18.0.
[native-inputs]: Add r-knitr.
 2022-05-28 23:19:47 +02:00
Ricardo Wurmus
1c4d0fc9a9 gnu: r-gagedata: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-gagedata): Update to 2.34.0.
 2022-05-28 23:19:47 +02:00
Ricardo Wurmus
c56b553e97 gnu: r-affydata: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-affydata): Update to 1.44.0.
 2022-05-28 23:19:47 +02:00