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c43835f485ffab55db62f01c8b2bfa569832af19
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148091 Commits

Author SHA1 Message Date
Ricardo Wurmus
c43835f485 gnu: Add r-bigreadr. 
* gnu/packages/cran.scm (r-bigreadr): New variable.

Change-Id: Ie59f4a1fbc469febedcd584cacac3ddd8d094c26
 2025-05-13 17:01:01 +02:00
Ricardo Wurmus
5fde1bc527 gnu: Add r-psychometric. 
* gnu/packages/cran.scm (r-psychometric): New variable.

Change-Id: Ifcca90bd90a4f7b8207692e01b535621e548a87e
 2025-05-13 17:01:01 +02:00
Ricardo Wurmus
6e8b3fd238 gnu: Add r-multilevel. 
* gnu/packages/cran.scm (r-multilevel): New variable.

Change-Id: I28a9ac6ae1498ea703eff45ae56855cab7de9bb6
 2025-05-13 17:01:01 +02:00
Ricardo Wurmus
e2b41eb747 gnu: Add r-rmio. 
* gnu/packages/cran.scm (r-rmio): New variable.

Change-Id: I6d43d59449d2d483d13fed0cdd14df2effb5e46d
 2025-05-13 17:01:01 +02:00
Ricardo Wurmus
1e2eecfa4b gnu: Add r-bigassertr. 
* gnu/packages/cran.scm (r-bigassertr): New variable.

Change-Id: I07b591f4025da1233a915f747054943188a2158c
 2025-05-13 17:01:01 +02:00
Leo Famulari
171e4e66c7 gnu: linux-libre 5.15: Update to 5.15.182. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.182.
(linux-libre-5.15-pristine-source, deblob-scripts-5.15): Update hashes.

Change-Id: Ie29d4aef9fd1377a622f5796384b80d737272f6a
 2025-05-13 10:49:49 -04:00
Leo Famulari
1279f4b392 gnu: linux-libre 6.1: Update to 6.1.138. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.138.
(linux-libre-6.1-pristine-source, deblob-scripts-6.1): Update hashes.

Change-Id: Ie1a51704c15e449a7f6bcdb17a7744b5be578d6e
 2025-05-13 10:49:48 -04:00
Leo Famulari
52bb4645d3 gnu: linux-libre 6.6: Update to 6.6.90. 
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.90.
(linux-libre-6.6-pristine-source): Update hash.

Change-Id: I0495bf7b49ba748bd51d13672e64884e937a7257
 2025-05-13 10:49:48 -04:00
Leo Famulari
dde13af78d gnu: linux-libre 6.12: Update to 6.12.28. 
* gnu/packages/linux.scm (linux-libre-6.12-version): Update to 6.12.28.
(linux-libre-6.12-pristine-source): Update hash.

Change-Id: I9d6e99e2b5b1d6adfd2f63276ae21f3cc3df9b72
 2025-05-13 10:49:48 -04:00
Leo Famulari
8cdae66789 gnu: linux-libre: Update to 6.14.6. 
* gnu/packages/linux.scm (linux-libre-6.14-version): Update to 6.14.6.
(linux-libre-6.14-pristine-source): Update hash.

Change-Id: I7b4666ced0ca94b81eb1ff9786fc1caaa15f885b
 2025-05-13 10:49:48 -04:00
Ricardo Wurmus
04270c718f gnu: r-mlr3misc: Update to 0.17.0. 
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.17.0.
[propagated-inputs]: Add r-cli.

Change-Id: I38e2e8c7c4d3cd65b127c356f135dc1dad3fc1c9
 2025-05-13 14:50:17 +02:00
Ricardo Wurmus
7a067167cd gnu: r-softimpute: Update to 1.4-3. 
* gnu/packages/cran.scm (r-softimpute): Update to 1.4-3.

Change-Id: I4b718844ffa382222f418696705ad316e09a8cb9
 2025-05-13 14:50:17 +02:00
Ricardo Wurmus
45beaab565 gnu: r-svglite: Update to 2.2.1. 
* gnu/packages/cran.scm (r-svglite): Update to 2.2.1.

Change-Id: I6c4f6cf94cefb0839aa97f401574cc71b156ea77
 2025-05-13 14:50:17 +02:00
Ricardo Wurmus
a43f5aac03 gnu: r-data-table: Update to 1.17.2. 
* gnu/packages/cran.scm (r-data-table): Update to 1.17.2.

Change-Id: I587b5fbbe6cc5e78711f6cc883cbec5b4b9054e8
 2025-05-13 14:50:16 +02:00
Ricardo Wurmus
6ecfb09fb7 gnu: r-bsseq: Update to 1.44.1. 
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.44.1.

Change-Id: I860ab39c7e188a381d2519c4399f7747e867c474
 2025-05-13 14:50:16 +02:00
Ricardo Wurmus
5d2845186d gnu: r-biotmle: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.32.1.

Change-Id: I21be4c7ca5dbff137bce7a143c22eb9b8f417fe8
 2025-05-13 14:50:16 +02:00
Ricardo Wurmus
301621fa0b gnu: r-erma: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-erma): Update to 1.24.1.

Change-Id: I25e19882b92ec6008817e89e8e0aaaa4efe15764
 2025-05-13 14:50:16 +02:00
Ricardo Wurmus
857e115455 gnu: r-spatialexperiment: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-spatialexperiment): Update to 1.18.1.

Change-Id: Ieca3d4685fd7ff56e027793813cd3fe4e034c91b
 2025-05-13 14:50:16 +02:00
Ricardo Wurmus
cc0c561b40 gnu: r-singlecellexperiment: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.30.1.

Change-Id: I0238fc7c9e7b798821e29570cf9d78261f2306f4
 2025-05-13 14:50:16 +02:00
Ricardo Wurmus
d55ee8edd0 gnu: r-chromvar: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.30.1.

Change-Id: Id9344c4f85834a8b050ff3c30c7a1128d3f36a61
 2025-05-13 14:50:16 +02:00
Ricardo Wurmus
ecbebc5ca9 gnu: r-circrnaprofiler: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.22.1.

Change-Id: I443629810f3ce69d1f5e80e72a6022a98bd8a002
 2025-05-13 14:50:15 +02:00
Ricardo Wurmus
1a2a984e4f gnu: r-rcistarget: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.28.1.

Change-Id: I1083e6d34e049079d0269b61882978fdee6db604
 2025-05-13 14:50:15 +02:00
Ricardo Wurmus
11ecd7aa64 gnu: r-sgseq: Update to 1.42.1. 
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.42.1.

Change-Id: I4b7d49f17579e8bb11fd35412e63b435be6f15b6
 2025-05-13 14:50:15 +02:00
Ricardo Wurmus
ac13c578f0 gnu: r-roar: Update to 1.44.1. 
* gnu/packages/bioconductor.scm (r-roar): Update to 1.44.1.

Change-Id: Ib66646c2eb6e3cb0f0906812a04ef08b666d52cb
 2025-05-13 14:50:15 +02:00
Ricardo Wurmus
7a0ed52e51 gnu: r-yamss: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.34.1.

Change-Id: Ia41fad0a328e1ec1a761847fa79a9c16962cc400
 2025-05-13 14:50:15 +02:00
Ricardo Wurmus
0acf9956fc gnu: r-aucell: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.30.1.

Change-Id: I28263f9fc21ac8272f6a8ba61aa641cfb35302c4
 2025-05-13 14:50:15 +02:00
Ricardo Wurmus
c73edded1a gnu: r-allelicimbalance: Update to 1.46.1. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.46.1.

Change-Id: I4af917145424e03ca90831ba71e8f304b5dd49bb
 2025-05-13 14:50:15 +02:00
Ricardo Wurmus
c6a9b298bd gnu: r-mlinterfaces: Update to 1.88.1. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.88.1.

Change-Id: I2a8f4a08b53fed8ee8f086c66b5ee58df4b22cf6
 2025-05-13 14:50:14 +02:00
Ricardo Wurmus
b2af3e05a0 gnu: r-clusterexperiment: Update to 2.28.1. 
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.28.1.

Change-Id: Ic789105fd575a93da69d68eadf9091583018fd2c
 2025-05-13 14:50:14 +02:00
Ricardo Wurmus
bf22c1df8a gnu: r-enrichplot: Update to 1.28.2. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.28.2.

Change-Id: Ib9712ce68e48f747fdd4b5b9a3ee4b4513af0604
 2025-05-13 14:50:14 +02:00
Ricardo Wurmus
95b930fc91 gnu: r-minfi: Update to 1.54.1. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.54.1.

Change-Id: I997568d0f2cb70a42c72a98b60b74f34a0a97694
 2025-05-13 14:50:14 +02:00
Ricardo Wurmus
21d2e4a632 gnu: r-milor: Update to 2.4.1. 
* gnu/packages/bioconductor.scm (r-milor): Update to 2.4.1.

Change-Id: Ie58731e8bf176fde4e5e70e38504dc5b7ef57a45
 2025-05-13 14:50:14 +02:00
Ricardo Wurmus
38ba7b801f gnu: r-scone: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.32.1.

Change-Id: I4087316689bb32f7b892b291122ae7a89ff9ace4
 2025-05-13 14:50:14 +02:00
Ricardo Wurmus
5984b9ddbb gnu: r-treesummarizedexperiment: Update to 2.16.1. 
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): Update to 2.16.1.

Change-Id: I43666115877afe54857a9e93255e725eaaeb9237
 2025-05-13 14:50:14 +02:00
Ricardo Wurmus
fe8e769103 gnu: r-interactionset: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.36.1.

Change-Id: Ie5687ce5dc1de1d029f156950debbb0e520db17e
 2025-05-13 14:50:13 +02:00
Ricardo Wurmus
3e759802a9 gnu: r-variantannotation: Update to 1.54.1. 
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.54.1.

Change-Id: I3607250b3db5e6fc99e95f8af79cce1bc24369d2
 2025-05-13 14:50:13 +02:00
Ricardo Wurmus
84ae5ddbaf gnu: r-txdbmaker: Update to 1.4.1. 
* gnu/packages/bioconductor.scm (r-txdbmaker): Update to 1.4.1.

Change-Id: Ia641479de6729e5cda6d8c971b61525e6c3773b6
 2025-05-13 14:50:13 +02:00
Ricardo Wurmus
5895ecb5e3 gnu: r-summarizedexperiment: Update to 1.38.1. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.38.1.

Change-Id: If0b1b287f7fa59b5dd59cfbc1e522d0abe325003
 2025-05-13 14:50:13 +02:00
Ricardo Wurmus
bd554c63b8 gnu: r-stager: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-stager): Update to 1.30.1.

Change-Id: Iaac5a037e08055c9d6b134fee8823ccdd93587a8
 2025-05-13 14:50:13 +02:00
Ricardo Wurmus
717d395a29 gnu: r-trajectoryutils: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.16.1.

Change-Id: I81f2ccc2ce1dbccb724cacd8ac2bab7747fd1d36
 2025-05-13 14:50:13 +02:00
Ricardo Wurmus
fafd4707b6 gnu: r-mosdef: Update to 1.4.1. 
* gnu/packages/bioconductor.scm (r-mosdef): Update to 1.4.1.

Change-Id: I36c395936aa2741d56762f8d4b44c1fac83adcf9
 2025-05-13 14:50:13 +02:00
Ricardo Wurmus
dcf2c2a414 gnu: r-raggedexperiment: Update to 1.32.2. 
* gnu/packages/bioconductor.scm (r-raggedexperiment): Update to 1.32.2.

Change-Id: Ic0ef5b5d879cf418ab0929a7322d557d42452ff0
 2025-05-13 14:50:13 +02:00
Ricardo Wurmus
30aa9b1a65 gnu: r-genomicfiles: Update to 1.44.1. 
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.44.1.

Change-Id: I096e8440de2d2b6b5265cca130530d8f821d4e5c
 2025-05-13 14:50:12 +02:00
Ricardo Wurmus
7848e8baae gnu: r-genomation: Update to 1.40.1. 
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.40.1.

Change-Id: I29f812992afd0832b0a262ad5d8e3aa6d475c3f2
 2025-05-13 14:50:12 +02:00
Ricardo Wurmus
6dd49589c5 gnu: r-enmix: Update to 1.44.1. 
* gnu/packages/bioconductor.scm (r-enmix): Update to 1.44.1.

Change-Id: If69c903e02b3108ef17189bcd0aac3752fa0a7f8
 2025-05-13 14:50:12 +02:00
Ricardo Wurmus
49e3d56a87 gnu: r-edger: Update to 4.6.2. 
* gnu/packages/bioconductor.scm (r-edger): Update to 4.6.2.

Change-Id: Ifa116d651fa04cf300de48cd931a2661df609542
 2025-05-13 14:50:12 +02:00
Ricardo Wurmus
5b27dbb67e gnu: r-dexseq: Update to 1.54.1. 
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.54.1.

Change-Id: I52f24353dbf1ee9160f17cc0c510a8a172b73905
 2025-05-13 14:50:12 +02:00
Ricardo Wurmus
b3d544ad7e gnu: r-deseq2: Update to 1.48.1. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.48.1.

Change-Id: Ieb18674dab9b016f37b880a06f772fbbdbadddb7
 2025-05-13 14:50:12 +02:00
Ricardo Wurmus
8cbf771e0a gnu: r-s2: Update to 1.1.8. 
* gnu/packages/cran.scm (r-s2): Update to 1.1.8.
[properties]: Record updater-extra-inputs and updater-ignored-native-inputs;
remove updater-extra-native-inputs.
[inputs]: Addd abseil-cpp.
[native-inputs]: Add r-geos.

Change-Id: If251e8c086dfa6d26bc1ca879d2d5a9adcd7a298
 2025-05-13 14:50:12 +02:00
Ricardo Wurmus
bc1fdb66d5 gnu: r-r-cache: Update to 0.17.0. 
* gnu/packages/statistics.scm (r-r-cache): Update to 0.17.0.

Change-Id: Iab4a74bda2949e140e01cc98aa1539ca4c043725
 2025-05-13 14:50:11 +02:00