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Commit Graph

2973 Commits

Author SHA1 Message Date
Marius Bakke
1d526f5035 Merge branch 'staging' into core-updates 2022-09-10 17:30:17 +02:00
Marius Bakke
07140e8b10 Merge branch 'master' into staging 2022-09-10 17:27:06 +02:00
Greg Hogan
fe42befd64 gnu: python-pip: Update to 22.2.2.
* gnu/packages/python-xyz.scm (python-pip): Update to 22.2.2.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-09-10 11:41:52 +01:00
Christopher Baines
ad1d3f98b1 gnu: Add comments to the bottom of a few package modules.
This will hopefully discourage patches which add new packages to the bottom of
files, as this increases the likelihood of conflicts when applying patches.

If there are more specific ways that packages should be arranged in specific
modules, this message can be updated accordingly.

* gnu/packages/bioconductor.scm: Add comment discouraging adding packages to
the bottom of the file.
* gnu/packages/bioinformatics.scm: ditto.
* gnu/packages/cran.scm: ditto.
* gnu/packages/crates-io.scm: ditto.
* gnu/packages/emacs-xyz.scm: ditto.
* gnu/packages/golang.scm: ditto.
* gnu/packages/guile-xyz.scm: ditto.
* gnu/packages/haskell-xyz.scm: ditto.
* gnu/packages/java.scm: ditto.
* gnu/packages/julia-xyz.scm: ditto.
* gnu/packages/lisp-xyz.scm: ditto.
* gnu/packages/ocaml.scm: ditto.
* gnu/packages/perl.scm: ditto.
* gnu/packages/python-science.scm: ditto.
* gnu/packages/python-xyz.scm: ditto.
* gnu/packages/ruby.scm: ditto.
* gnu/packages/tex.scm: ditto.
2022-09-10 10:45:27 +01:00
Marius Bakke
9ef33dce94 Merge branch 'staging' into core-updates 2022-09-09 23:04:13 +02:00
Marius Bakke
8fbd8c8245 Merge branch 'master' into staging 2022-09-09 23:01:57 +02:00
Marius Bakke
835938ad61 gnu: python-psutil: Update to 5.9.2.
* gnu/packages/python-xyz.scm (python-psutil): Update to 5.9.2.
2022-09-09 23:00:21 +02:00
Marius Bakke
ef6f786c93 gnu: python-pathlib2: Update to 2.3.7.post1.
* gnu/packages/python-xyz.scm (python-pathlib2): Update to 2.3.7post1.
2022-09-09 23:00:21 +02:00
Marius Bakke
8b1f117187 gnu: python-beautifulsoup4: Update to 4.11.1.
* gnu/packages/python-xyz.scm (python-beautifulsoup4): Update to 4.11.1.
[arguments]: Override check phase.
[native-inputs]: Add PYTHON-PYTEST.
2022-09-09 23:00:21 +02:00
Marius Bakke
b6df670541 gnu: python-fonttools: Update to 4.37.1.
* gnu/packages/python-xyz.scm (python-fonttools): Update to 4.37.1.
(python-fonttools-next): Remove variable.
* gnu/packages/fontutils.scm (python-afdko)[propagated-inputs]: Change from
PYTHON-FONTTOOLS-NEXT to PYTHON-FONTTOOLS.
2022-09-09 17:03:57 +02:00
Marius Bakke
6634ea9ff9 gnu: python-py: Update to 1.11.0.
* gnu/packages/python-xyz.scm (python-py): Update to 1.11.0.
2022-09-09 17:03:56 +02:00
Marius Bakke
65302a7045 gnu: Deprecate the 'python-pytest-6' variable.
* gnu/packages/check.scm (python-pytest-6): Deprecate.
* gnu/packages/matrix.scm (python-matrix-nio)[native-inputs]: Change from
PYTHON-PYTEST-6 to PYTHON-PYTEST.
* gnu/packages/music.scm (beets)[native-inputs]: Likewise.
* gnu/packages/python-xyz.scm (python-munkres, python-cons)[native-inputs]: Likewise.
2022-09-09 17:03:56 +02:00
Marius Bakke
3533db28ce gnu: python-hypothesis: Update to 6.54.5.
* gnu/packages/check.scm (python-hypothesis): Update to 6.54.5.
[arguments]: Disable sanity check.
[propagated-inputs]: Add PYTHON-EXCEPTIONGROUP.
(python-hypothesis-next): Deprecate.
* gnu/packages/matrix.scm (python-matrix-nio)[native-inputs]: Change from
PYTHON-HYPOTHESIS-NEXT to PYTHON-HYPOTHESIS.
* gnu/packages/python-web.scm (python-h2)[native-inputs]: Likewise.
* gnu/packages/python-xyz.scm (python-numpy, python-cattrs)[native-inputs]: Likewise.
2022-09-09 17:03:56 +02:00
Marius Bakke
66b6d6a930 gnu: python-exceptiongroup: Disable tests.
* gnu/packages/python-xyz.scm (python-exceptiongroup)[arguments]: Add #:tests?.
[native-inputs]: Remove PYTHON-PYTEST.
2022-09-09 17:03:56 +02:00
Marius Bakke
6c03dce10d gnu: python-distlib: Update to 0.3.5.
* gnu/packages/python-xyz.scm (python-distlib): Update to 0.3.5.
[source](uri): Use tarball instead of zipball.
[arguments]: Use gexp and a PEP517-style build.
[native-inputs]: Add PYTHON-PYPA-BUILD and PYTHON-PYTEST.
2022-09-09 17:03:56 +02:00
Marius Bakke
85009bedeb gnu: python-sortedcontainers: Update to 2.4.0.
* gnu/packages/python-xyz.scm (python-sortedcontainers): Update to 2.4.0.
[propagated-inputs]: Remove.
[home-page]: Update to current.
2022-09-09 17:03:55 +02:00
Marius Bakke
884548b476 Merge branch 'staging' into core-updates 2022-09-08 21:12:52 +02:00
Marius Bakke
fa894b3f4d Merge branch 'master' into staging 2022-09-08 20:56:57 +02:00
Arun Isaac
8d34df72cb gnu: Add python-pymonad.
* gnu/packages/python-xyz.scm (python-pymonad): New variable.
2022-09-08 20:56:08 +05:30
Greg Hogan
08c6fd9511 gnu: python-sympy: Update to 1.11.1.
All dependents successfully build except the continued failure of
python-dolfin-adjoint: http://ci.guix.gnu.org/build/1306546/details

* gnu/packages/python-xyz.scm (python-sympy): Update to 1.11.1.

Signed-off-by: Marius Bakke <marius@gnu.org>
2022-09-07 22:02:42 +02:00
Marius Bakke
6cfb2e6270 Merge branch 'master' into staging 2022-09-07 18:20:23 +02:00
Marius Bakke
9046adf8ef gnu: python-cfgv: Update to 3.3.1.
* gnu/packages/python-xyz.scm (python-cfgv): Update to 3.3.1.
[arguments]: Respect TESTS? keyword in check phase.
[native-inputs]: Remove PYTHON-COVERAGE and PYTHON-COVDEFAULTS.
2022-09-07 17:36:42 +02:00
Marius Bakke
6ba66072e0 gnu: python-fs: Update to 2.4.16.
* gnu/packages/python-xyz.scm (python-fs): Update to 2.4.16.
2022-09-07 17:36:42 +02:00
Marius Bakke
a867125b3a gnu: python-cairocffi: Update to 1.3.0.
* gnu/packages/python-xyz.scm (python-cairocffi): Update to 1.3.0.
2022-09-07 17:36:42 +02:00
Marius Bakke
79143344f8 gnu: python-xlsxwriter: Update to 3.0.3.
* gnu/packages/python-xyz.scm (python-xlsxwriter): Update to 3.0.3.
2022-09-07 17:36:42 +02:00
Marius Bakke
1329b64db5 gnu: python-jdcal: Update to 1.4.1.
* gnu/packages/python-xyz.scm (python-jdcal): Update to 1.4.1.
[arguments]: Use G-expression and respect TESTS? keyword.
2022-09-07 17:36:42 +02:00
Marius Bakke
8d5637103f gnu: python-et-xmlfile: Update to 1.1.0.
* gnu/packages/python-xyz.scm (python-et-xmlfile): Update to 1.1.0.
[source]: Switch to HG-FETCH.
[arguments]: Use G-expression and respect TESTS? keyword.
2022-09-07 17:36:41 +02:00
Marius Bakke
58863b93b0 Merge branch 'staging' into core-updates 2022-09-01 23:26:57 +02:00
Marius Bakke
0c518f974e Merge branch 'master' into staging 2022-09-01 23:07:33 +02:00
Peter Polidoro
13f53335ef gnu: Add python-plotille.
* gnu/packages/python-xyz.scm (python-plotille): New variable.

Signed-off-by: David Thompson <davet@gnu.org>
2022-09-01 11:32:18 -04:00
Marius Bakke
c4ce54055a Merge branch 'master' into staging 2022-09-01 16:24:18 +02:00
Nicolas Graves
3bf5a19609 gnu: python-tox: Move to python-check.
* gnu/packages/python-xyz.scm (python-tox): Move from here...
* gnu/packages/python-check.scm (python-tox): ... to here.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-09-01 11:50:02 +02:00
Maxim Cournoyer
1898c6c297 gnu: Add python-typing-extensions-next.
* gnu/packages/python-xyz.scm (python-typing-extensions-next): New variable.
2022-08-31 23:13:45 -04:00
Maxim Cournoyer
5755aa61f6 gnu: Add python-types-protobuf.
* gnu/packages/python-xyz.scm (python-types-protobuf): New variable.
2022-08-31 23:13:45 -04:00
jgart via Guix-patches via
5aa431ba20 gnu: python-simplejson: Update to 3.17.6.
* gnu/packages/python-xyz.scm (python-simplejson): Update to 3.17.6.

Signed-off-by: David Thompson <davet@gnu.org>
2022-08-31 17:15:36 -04:00
Marius Bakke
859509a11c gnu: python-numpy: Avoid usage of 'this-package-input'.
* gnu/packages/python-xyz.scm (python-numpy)[arguments]: Use SEARCH-INPUT-FILE
instead of THIS-PACKAGE-INPUT.
2022-08-30 20:43:02 +02:00
Marius Bakke
59c136ef61 Merge branch 'staging' into core-updates 2022-08-30 20:18:55 +02:00
Marius Bakke
827b4117da Merge branch 'master' into staging 2022-08-30 18:58:57 +02:00
Maxime Devos
d720aa4a88 gnu: python-jaraco-context: Don't ask to run tests when cross-compiling.
* gnu/packages/python-xyz.scm
(python-jaraco-context)[arguments]{#:tests?}: When cross-compiling, set to #false.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-08-30 08:57:57 +02:00
Maxime Devos
321620d15b gnu: python-jupyter-client: Don't ask to run tests when cross-compiling.
* gnu/packages/python-xyz.scm
(python-jupyter-client)[arguments]{#:tests?}: When cross-compiling, set to #false.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-08-30 08:57:57 +02:00
Maxime Devos
7d49984da4 gnu: python-pip-run: Don't ask to run tests when cross-compiling.
* gnu/packages/python-xyz.scm
(python-pip-run)[arguments]{#:tests?}: When cross-compiling, set to #false.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-08-30 08:57:57 +02:00
Maxime Devos
c548ff6a30 gnu: python-jaraco-functools: Don't ask to run tests when cross-compiling.
* gnu/packages/python-xyz.scm
(python-jaraco-functools)[arguments]{#:tests?}: When cross-compiling, set to #false.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-08-30 08:57:56 +02:00
Maxime Devos
dbd5612c90 gnu: python-path: Don't ask to run tests when cross-compiling.
* gnu/packages/python-xyz.scm
(python-path)[arguments]{#:tests?}: When cross-compiling, set to #false.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-08-30 08:57:56 +02:00
Maxime Devos
80a75c5357 gnu: python-fonttools-full: Don't ask to run tests when cross-compiling.
* gnu/packages/python-xyz.scm
(python-fonttools-full)[arguments]{#:tests?}: When cross-compiling, set to #false.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-08-30 08:57:56 +02:00
Tomasz Jeneralczyk
619af9f307 gnu: Add python-mpv.
* gnu/packages/python-xyz.scm (python-mpv): Add variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-08-30 00:40:05 +02:00
Konrad Hinsen
9529384c92 gnu: snakemake-7: Convert dependencies to propagated-inputs
* gnu/packages/python-xyz.scm (snakemake-7)[inputs]: Change to ...
[propagated-inputs]: ... this, to ensure that "python -m snakemake"
works (because snakemake uses it internally).

Signed-off-by: Marius Bakke <marius@gnu.org>
2022-08-29 18:22:59 +02:00
Konrad Hinsen
6a31fb6e7b gnu: snakemake-6: Convert dependencies to propagated-inputs
* gnu/packages/python-xyz.scm (snakemake-6)[inputs]: Change to ...
[propagated-inputs]: ... this, to ensure that "python -m snakemake"
works (because snakemake uses it internally).

Signed-off-by: Marius Bakke <marius@gnu.org>
2022-08-29 18:22:59 +02:00
Konrad Hinsen
5831155175 gnu: snakemake-7: Fix cluster execution bug
* gnu/packages/python-xyz.scm (snakemake-7)[arguments]: Revise the patch for
the cluster execution script

Signed-off-by: Marius Bakke <marius@gnu.org>
2022-08-29 18:22:58 +02:00
Maxim Cournoyer
0c6586df3b gnu: python-numpy: Skip 'test_rint_big_int' test.
* gnu/packages/python-xyz.scm (python-numpy)
[phases]{check}: Skip the 'test_rint_big_int' test.
2022-08-28 21:07:49 -04:00
Marius Bakke
dedbaa3a69 Merge branch 'master' into staging 2022-08-28 15:43:30 +02:00