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c5265b90b055ee15908298c5d463301f1aae2eb1
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148123 Commits

Author SHA1 Message Date
Maxim Cournoyer
c5265b90b0 system: Add sgx group to %base-groups. 
* gnu/system/shadow.scm (%base-groups): Add 'sgx' group.

Fixes: <https://issues.guix.gnu.org/70278>
Change-Id: I4f9e3c7751ac11f0c7a4283390223778511494f8
 2025-05-14 22:10:44 +09:00
Maxim Cournoyer
3bb6147fdc services: udev: Also create subsystem nodes at boot. 
This is a more correct fix to CDROM/DVDROM events/auto-mounting than was made
in the now-reverted commit 670724edcf ("gnu: eudev: Fix optical discs
detection/auto-mounting.")

This changes causes the 60-block.rules udev rules file shipped with eudev to
correctly set the default polling period to 2000 ms on block devices, which is
necessary for kernel events to be fired for CDROM drives for example.  To
validate it is set:

  # cat /sys/module/block/parameters/events_dfl_poll_msecs
  2000

Before, it would return 0.

* gnu/services/base.scm (udev-shepherd-service): <#:start>: Add a 'udevadm
trigger --change=add --type=subsystems' invocation, so that it also creates
subsystem nodes, as done in Void Linux or LinuxFromScratch init scripts for
example.
* gnu/tests/base.scm (run-basic-test): Add test.

Fixes: <https://issues.guix.gnu.org/35584>
Change-Id: Idc0eb5640163b27e41b72cc0c1885412a60805c1
 2025-05-14 22:10:44 +09:00
Maxim Cournoyer
9b281fd484 Revert "gnu: eudev: Fix optical discs detection/auto-mounting." 
This reverts commit 670724edcf.
 2025-05-14 22:10:44 +09:00
Remco van 't Veer
5284d40e19 gnu: ruby-3.3: Upgrade to 3.3.7. 
* gnu/packages/ruby.scm (ruby-3.3): Upgrade to 3.3.7.

Change-Id: I93661f31ee8d0c69cf1e70c39977da7713d8348c
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-05-14 15:06:46 +02:00
Sören Tempel
db1f83485b gnu: Add bitwuzla. 
* gnu/packages/maths.scm (bitwuzla): New variable.

Change-Id: I23325bade58dc2d72b598a961c2dcf4e1edd362f
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-05-14 14:55:57 +02:00
Sören Tempel
bf0bfb38cf gnu: Add symfpu. 
* gnu/packages/maths.scm (symfpu): New variable.

Change-Id: Ib990dd60e297d7fcba70af85f71d864e8b2cadb4
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-05-14 14:55:57 +02:00
Sören Tempel
d4dbf6007c gnu: cadical: Install C++ header file. 
* gnu/packages/maths.scm (cadical)[arguments]: Install cadical.hpp.

Change-Id: Ibda478006fef5425cb0d3eddf045dac5570b33da
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-05-14 14:55:57 +02:00
Ricardo Wurmus
50d5585884 gnu: r-dittoseq: Add missing test inputs. 
* gnu/packages/bioconductor.scm (r-dittoseq)[properties]: Record
updater-extra-native-inputs.
[native-inputs]: Add r-complexheatmap, r-ggplot-multistats, and r-ggrastr.

Change-Id: I47194da4dde18f96d4afa53cf4404d9cb1115a2e
 2025-05-14 13:54:32 +02:00
Jonathan Brielmaier
6d1b67b38b gnu: webrtc-for-telegram-desktop: Update to 0-489.8c233a4. 
Fixes the build against pipewire@1.4.

* gnu/packages/patches/webrtc-for-telegram-desktop-unbundle-libsrtp.patch:
Delete patch file, which was merged upstream.
* gnu/packages/telegram.scm (webrtc-for-telegram-desktop): Update to
0-489.8c233a4.
[source]: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove patch.

Change-Id: Ie07b49a402aa9b11097c7c0c61ac5da0e03fa899
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-05-14 11:47:56 +02:00
Fredrik Salomonsson
19a1a3218e gnu: emacs-suneater-theme: Update to 2.5.3. 
* gnu/packages/emacs-xyz.scm (emacs-suneater-theme): Update to 2.5.3.

Change-Id: Ia19568d4563ed7c73dd791da8bdd28ef1f4ccc4f
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-05-14 11:42:49 +02:00
Ricardo Wurmus
1e8bdc92c9 gnu: python-pyarrow: Update Cython and CMake 
* gnu/packages/databases.scm (python-pyarrow)[native-inputs]: Replace
cmake-minimal with cmake, and replace python-cython with python-cython-3.

Change-Id: I7a7b685b9f88b7f9058d83cff6470c20487f265d
 2025-05-14 11:40:54 +02:00
Tomas Volf
b649d5bbcb gnu: mpv: Update to 0.40.0. 
* gnu/packages/video.scm (mpv): Update to 0.40.0.

Change-Id: Ic7d81423a9c26a03b582a362d147a9836a6e9413
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-05-14 11:38:46 +02:00
Tomas Volf
e578728f33 gnu: python-mpv: Update to 1.0.8. 
* gnu/packages/python-xyz.scm (python-mpv): Update to 1.0.8.

Change-Id: I32218397e4f43a608af0bd5e295a53329a1b466b
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-05-14 11:38:37 +02:00
Artyom V. Poptsov
5f5d84becc gnu: yggtray: Update to 0.1.13. 
* gnu/packages/networking.scm (yggtray): Update to 0.1.13.
[native-inputs]: Add graphviz.

Change-Id: Ia853cfafbcc6ba92fa3399ab565a4c75fbe8ab62
 2025-05-13 23:43:31 +03:00
Sergey Trofimov
380282f3f5 gnu: packages: Fix broken descriptions. 
A few description mistakenly use @{foo} instead of @code{foo} which
results in broken formatting in guix search.

* gnu/packages/bioinformatics.scm (umi-tools),
* gnu/packages/cran.scm (r-ggside),
* gnu/packages/crates-apple.scm: (rust-commoncrypto-0.2),
* gnu/packages/crates-io.scm: (rust-ndarray-rand-0.15),
* gnu/packages/emacs-xyz.scm (emacs-load-relative, emacs-el-x)
(emacs-helm-org-ql, emacs-consult-lsp),
* gnu/packages/golang-xyz.scm (go-github-com-songmu-gitconfig),
* gnu/packages/haskell-xyz.scm (ghc-text-short, ghc-validation),
* gnu/packages/image.scm (imgp),
* gnu/packages/perl-check.scm (perl-test-file-contents),
* gnu/packages/perl-web.scm (perl-uri-db),
* gnu/packages/perl.scm (perl-clipboard, perl-module-refresh),
* gnu/packages/python-xyz.scm (python-ddlparse, python-black-macchiato)
(python-pysendfile),
* gnu/packages/qt.scm (qt5compat),
* gnu/packages/ruby.scm (ruby-ruby-engine, ruby-httpclient),
* gnu/packages/sagemath.scm (python-memory-allocator),
* gnu/packages/spreadsheet.scm (sc-im),
* gnu/packages/time.scm (python-pendulum):
[description]: Fix malformed macros.

Change-Id: I3ed755a54aecf40bf0c5c982f9e70b7cd3689de7
Signed-off-by: Greg Hogan <code@greghogan.com>
 2025-05-13 16:35:45 +00:00
Greg Hogan
11cd06a4f7 gnu: avro-cpp: Update to 1.12.0. 
* gnu/packages/serialization.scm (avro-cpp-1.9): Rename to avro-cpp.
(avro-cpp): Update to 1.12.0.
[source]<uri>: Use Apache mirror.
[arguments]<#:phases>: Add phase to use system fmt.
[inputs]: Add fmt.
(avro-cpp-1.9-for-irods): Inherit from avro-cpp.

Change-Id: Iee70378ad5452ad51757aadb8f6adaf00fc5bab5
 2025-05-13 16:35:44 +00:00
Greg Hogan
c0fc7d2a0a gnu: python-leidenalg: Update to 0.10.2. 
* gnu/packages/graph.scm (python-leidenalg): Update to 0.10.2.
[inputs]: Add libleidenalg.
[description]: Update to account for removal of C++ implementation.

Change-Id: Ia00e819eda4c03f25e54dc72483c7bcaf2ab396f
 2025-05-13 16:35:43 +00:00
Greg Hogan
35a15c5a70 gnu: Add libleidenalg. 
* gnu/packages/graph.scm (libleidenalg): New variable.

Change-Id: I73b21fcbca63ec26f521e8a17d45537dbcf82ffe
 2025-05-13 16:35:43 +00:00
Greg Hogan
61e413eb7e gnu: python-louvain-igraph: Update to 0.8.2. 
* gnu/packages/graph.scm (python-louvain-igraph): Update to 0.8.2.

Change-Id: Ifa755464fb88e0af6829d6f2569b900a80949e76
 2025-05-13 16:35:42 +00:00
Greg Hogan
782d431cca gnu: python-vtraag-louvain: Deprecate. 
* gnu/packages/graph.scm (python-vtraag-louvain): Deprecate with
replacement python-louvain-igraph.

Change-Id: I4e8b938a0a7ffb1932209bfff97a84b075aabb0e
 2025-05-13 16:35:42 +00:00
Greg Hogan
73eb9b8d24 gnu: python-igraph: Update to 0.11.8. 
* gnu/packages/graph.scm (python-igraph): Update to 0.11.8.

Change-Id: I6493392a700ea64bb0bf3c300a39a323e9eebf36
 2025-05-13 16:35:41 +00:00
Greg Hogan
365d1ed908 gnu: igraph: Update to 0.10.15. 
* gnu/packages/graph.scm (igraph): Update to 0.10.15.
[source]: Remove patches.
* gnu/packages/patches/igraph-fix-varargs-integer-size.patch: Delete.
* gnu/local.mk (dist_patch_DATA): Update accordingly.

Change-Id: Iffbfdc83b347f9abf82891f5b97954903d3df3dd
 2025-05-13 16:35:40 +00:00
Greg Hogan
c6aaffba1c gnu: Add %suitesparse-package-versions. 
* gnu/packages/maths.scm (%suitesparse-package-versions): New variable.
(suitesparse-version): Update to 7.10.2.
(suitesparse-source)[origin]: Update deletion list.
(suitesparse-amd, suitesparse-btf, suitesparse-camd, suitesparse-colamd,
suitesparse-ccolamd, suitesparse-cholmod, suitesparse-cxsparse,
suitesparse-klu, suitesparse-ldl, suitesparse-rbio,
suitesparse-mongoose, suitesparse-spex, suitesparse-spqr,
suitesparse-umfpack)[version]: Use %suitesparse-package-versions.
[arguments]<#:configure-flags>: Preserve include path.
(suitesparse-cholmod)[arguments]<#:phases>('install-license-files):
Update paths.
(suitesparse-cholmod)[arguments]<#:phases>('build-doc): Update paths.
(suitesparse-spex)[native-inputs]: Add texlive-fncychap.
(suitesparse-spqr)[native-inputs]: Add texlive-etoolbox.
* gnu/packages/patches/gklib-suitesparse.patch: Update version.

Change-Id: I14a9bfeddb37330c88a2e94b0992c2f1afbc5310
 2025-05-13 16:35:40 +00:00
Greg Hogan
9a41a54da2 gnu: diff-so-fancy: Update to 1.4.4. 
* gnu/packages/version-control.scm (diff-so-fancy): Update to 1.4.4.

Change-Id: If00c2b2cf653cb58bf92c05074d838a9c73a6cf0
 2025-05-13 16:35:39 +00:00
Greg Hogan
56f940e72f gnu: Rename valgrind-next to valgrind. 
* gnu/packages/valgrind.scm (valgrind/pinned): Make public.
(valgrind): Delete.
(valgrind-next): Rename to valgrind.
(valgrind/interactive): Inherit from valgrind.
* gnu/packages/audio.scm (codec2),
* gnu/packages/bootloaders.scm (dtc),
* gnu/packages/chromium.scm (ungoogled-chromium),
* gnu/packages/crates-io.scm (rust-crabgrind-0.1),
* gnu/packages/crates-tls.scm (rust-rustls-pki-types-1),
* gnu/packages/file-systems.scm (bindfs),
* gnu/packages/gnome.scm (libratbag, gnome-software),
* gnu/packages/high-availability.scm (pacemaker),
* gnu/packages/linux.scm (multipath-tools),
* gnu/packages/machine-learning.scm (python-pytorch),
* gnu/packages/mpi.scm (openmpi-4),
* gnu/packages/music.scm (stargate),
* gnu/packages/perl-check.scm (perl-test-runvalgrind),
* gnu/packages/prolog.scm (trealla),
* gnu/packages/qt.scm (qtwebengine-5, qt-creator),
* gnu/packages/robotics.scm (aseba),
* gnu/packages/ruby.scm (ruby-ruby-memcheck),
* gnu/packages/spreadsheet.scm (sc-im),
* gnu/packages/web.scm (jq): Rename valgrind to valgrind/pinned.

Change-Id: I9dec25abce643ef6d815a2cc50414c4f65f1e8d3
 2025-05-13 16:35:39 +00:00
Greg Hogan
8e0bab93e5 gnu: fmt: Update to 11.2.0. 
* gnu/packages/pretty-print.scm (fmt): Update to 11.2.0.

Change-Id: Ifde5f94dc58dfc2617e2c5d731e8a97d4ca4705f
 2025-05-13 16:35:37 +00:00
Greg Hogan
2bb9ba3350 gnu: imhex-pattern-language: Downgrade dependency. 
* gnu/packages/hexedit.scm (imhex-pattern-language)
[native-inputs]: Replace fmt-11 with fmt-10.

Change-Id: I8e9c51c3f5f2127bd4c663227dd0b4145e2d2c4f
 2025-05-13 16:35:37 +00:00
Sergey Trofimov
4e43c0dd21 gnu: Remove quazip-0. 
Packages depending on quazip@0.9.1 have been migrated to quazip@1.4.

* gnu/packages/compression.scm (quazip-0): Delete variable.

Change-Id: Ia952c3758fd39ce0f9c04b7a89bd9b8365af6974
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-05-13 17:25:27 +02:00
Sergey Trofimov
95bc29934e gnu: nomacs: Update to 3.21.1. 
* gnu/packages/image-viewers.scm (nomacs): Update to 3.21.1.
[arguments]<#:configure-flags>: Enable quazip.
[inputs], [native-inputs]: Switch to Qt6.
[inputs]<plugins>: Fetch from a fork that is updated to support Qt6.

Change-Id: I957054430043b72e6f50c4849fbce92f12b51adc
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-05-13 17:25:19 +02:00
Ricardo Wurmus
8b2426a1a1 gnu: Add r-anglemania. 
* gnu/packages/bioinformatics.scm (r-anglemania): New variable.

Change-Id: I14e8df223af809cb2a0bb2e569c9a6976de35e6b
 2025-05-13 17:01:01 +02:00
Ricardo Wurmus
ee4f2236e0 gnu: Add r-bigstatsr. 
* gnu/packages/cran.scm (r-bigstatsr): New variable.

Change-Id: I5e4bc7f9f6567c7cf93cc12bb3d33b46c00646aa
 2025-05-13 17:01:01 +02:00
Ricardo Wurmus
9e948013cd gnu: Add r-bigparallelr. 
* gnu/packages/cran.scm (r-bigparallelr): New variable.

Change-Id: I3667c9ae8dce38b8501e8427da96091be0ce7162
 2025-05-13 17:01:01 +02:00
Ricardo Wurmus
c43835f485 gnu: Add r-bigreadr. 
* gnu/packages/cran.scm (r-bigreadr): New variable.

Change-Id: Ie59f4a1fbc469febedcd584cacac3ddd8d094c26
 2025-05-13 17:01:01 +02:00
Ricardo Wurmus
5fde1bc527 gnu: Add r-psychometric. 
* gnu/packages/cran.scm (r-psychometric): New variable.

Change-Id: Ifcca90bd90a4f7b8207692e01b535621e548a87e
 2025-05-13 17:01:01 +02:00
Ricardo Wurmus
6e8b3fd238 gnu: Add r-multilevel. 
* gnu/packages/cran.scm (r-multilevel): New variable.

Change-Id: I28a9ac6ae1498ea703eff45ae56855cab7de9bb6
 2025-05-13 17:01:01 +02:00
Ricardo Wurmus
e2b41eb747 gnu: Add r-rmio. 
* gnu/packages/cran.scm (r-rmio): New variable.

Change-Id: I6d43d59449d2d483d13fed0cdd14df2effb5e46d
 2025-05-13 17:01:01 +02:00
Ricardo Wurmus
1e2eecfa4b gnu: Add r-bigassertr. 
* gnu/packages/cran.scm (r-bigassertr): New variable.

Change-Id: I07b591f4025da1233a915f747054943188a2158c
 2025-05-13 17:01:01 +02:00
Leo Famulari
171e4e66c7 gnu: linux-libre 5.15: Update to 5.15.182. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.182.
(linux-libre-5.15-pristine-source, deblob-scripts-5.15): Update hashes.

Change-Id: Ie29d4aef9fd1377a622f5796384b80d737272f6a
 2025-05-13 10:49:49 -04:00
Leo Famulari
1279f4b392 gnu: linux-libre 6.1: Update to 6.1.138. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.138.
(linux-libre-6.1-pristine-source, deblob-scripts-6.1): Update hashes.

Change-Id: Ie1a51704c15e449a7f6bcdb17a7744b5be578d6e
 2025-05-13 10:49:48 -04:00
Leo Famulari
52bb4645d3 gnu: linux-libre 6.6: Update to 6.6.90. 
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.90.
(linux-libre-6.6-pristine-source): Update hash.

Change-Id: I0495bf7b49ba748bd51d13672e64884e937a7257
 2025-05-13 10:49:48 -04:00
Leo Famulari
dde13af78d gnu: linux-libre 6.12: Update to 6.12.28. 
* gnu/packages/linux.scm (linux-libre-6.12-version): Update to 6.12.28.
(linux-libre-6.12-pristine-source): Update hash.

Change-Id: I9d6e99e2b5b1d6adfd2f63276ae21f3cc3df9b72
 2025-05-13 10:49:48 -04:00
Leo Famulari
8cdae66789 gnu: linux-libre: Update to 6.14.6. 
* gnu/packages/linux.scm (linux-libre-6.14-version): Update to 6.14.6.
(linux-libre-6.14-pristine-source): Update hash.

Change-Id: I7b4666ced0ca94b81eb1ff9786fc1caaa15f885b
 2025-05-13 10:49:48 -04:00
Ricardo Wurmus
04270c718f gnu: r-mlr3misc: Update to 0.17.0. 
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.17.0.
[propagated-inputs]: Add r-cli.

Change-Id: I38e2e8c7c4d3cd65b127c356f135dc1dad3fc1c9
 2025-05-13 14:50:17 +02:00
Ricardo Wurmus
7a067167cd gnu: r-softimpute: Update to 1.4-3. 
* gnu/packages/cran.scm (r-softimpute): Update to 1.4-3.

Change-Id: I4b718844ffa382222f418696705ad316e09a8cb9
 2025-05-13 14:50:17 +02:00
Ricardo Wurmus
45beaab565 gnu: r-svglite: Update to 2.2.1. 
* gnu/packages/cran.scm (r-svglite): Update to 2.2.1.

Change-Id: I6c4f6cf94cefb0839aa97f401574cc71b156ea77
 2025-05-13 14:50:17 +02:00
Ricardo Wurmus
a43f5aac03 gnu: r-data-table: Update to 1.17.2. 
* gnu/packages/cran.scm (r-data-table): Update to 1.17.2.

Change-Id: I587b5fbbe6cc5e78711f6cc883cbec5b4b9054e8
 2025-05-13 14:50:16 +02:00
Ricardo Wurmus
6ecfb09fb7 gnu: r-bsseq: Update to 1.44.1. 
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.44.1.

Change-Id: I860ab39c7e188a381d2519c4399f7747e867c474
 2025-05-13 14:50:16 +02:00
Ricardo Wurmus
5d2845186d gnu: r-biotmle: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.32.1.

Change-Id: I21be4c7ca5dbff137bce7a143c22eb9b8f417fe8
 2025-05-13 14:50:16 +02:00
Ricardo Wurmus
301621fa0b gnu: r-erma: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-erma): Update to 1.24.1.

Change-Id: I25e19882b92ec6008817e89e8e0aaaa4efe15764
 2025-05-13 14:50:16 +02:00
Ricardo Wurmus
857e115455 gnu: r-spatialexperiment: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-spatialexperiment): Update to 1.18.1.

Change-Id: Ieca3d4685fd7ff56e027793813cd3fe4e034c91b
 2025-05-13 14:50:16 +02:00