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c9cfcd5159f4a67ca38ccdef5398c0a601f167be
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58932 Commits

Author SHA1 Message Date
Maxim Cournoyer
c9cfcd5159 gnu: mesa: Update to 20.1.8. 
* gnu/packages/gl.scm (mesa): Update to 20.1.8.
(mesa-20.0.8): Remove variable.
 2020-09-26 01:20:36 -04:00
Ludovic Courtès
0b40d1a3b4 gnu: gnutls: Remove dependency on the Autotools. 
This is a followup to 5cf6f6fe7b.

* gnu/packages/tls.scm (gnutls)[arguments]: In 'disable-failing-tests'
phase, change 'tests/fastopen.sh' instead of 'tests/Makefile.am'.
[native-inputs]: Remove AUTOCONF, AUTOMAKE, GETTEXT-MINIMAL, and
LIBTOOL.
 2020-09-25 15:15:59 +02:00
Ludovic Courtès
e7ab9c33cc gnu: gnutls: Enable more testing. 
* gnu/packages/tls.scm (gnutls)[native-inputs]: Add NET-TOOLS, IPROUTE,
and SOCAT.
[arguments]: Adjust #:disallowed-references accordingly.
 2020-09-25 14:50:56 +02:00
Ludovic Courtès
0e54d63dfa gnu: gnutls: Update to 3.6.15. 
* gnu/packages/tls.scm (gnutls): Update to 3.6.15.
[replacement]: Remove.
(gnutls-3.6.14): Remove.
* gnu/packages/vpn.scm (openconnect)[inputs]: Adjust accordingly.
* gnu/packages/package-management.scm (guix)[propagated-inputs]:
Likewise.
 2020-09-25 14:50:02 +02:00
Ludovic Courtès
a83860cd22 gnu: ld-wrapper: Unset 'GUILE_SYSTEM_COMPILED_PATH'. 
'GUILE_SYSTEM_COMPILED_PATH' is set by guile-bootstrap@2.0.  Unsetting
it ensures it does not interfere.

* gnu/packages/ld-wrapper.in: Unset GUILE_SYSTEM_COMPILED_PATH.
 2020-09-25 14:50:02 +02:00
Maxim Cournoyer
def6e2ae46 gnu: util-linux: Search for setuid helper programs as well. 
To allow using mount as an unprivileged user, the helper commands must also be
setuid.  Before this change, the 'mount' command would only look under
/run/current/profile/sbin.  Extend the default path to include
/run/setuid-programs as well.

Partially addresses <https://issues.guix.gnu.org/39670>.

* gnu/packages/linux.scm (util-linux)[configure-flags]: Prepend
"/run/setuid-programs:" to the default search path.

Reported-by: Nathan Dehnel <ncdehnel@gmail.com>
 2020-09-24 15:21:04 -04:00
Maxim Cournoyer
5cf6f6fe7b gnu: gnutls: Fix build. 
Fixes <http://issues.guix.gnu.org/43561>.

* gnu/packages/tls.scm (gnutls)[phases]{disable-failing-tests}: Add phase.
[native-inputs]: Add autoconf, automake, gettext-minimal, libtool and texinfo.
 2020-09-23 22:41:06 -04:00
Efraim Flashner
ddda703840 gnu: libgcrypt: Update to 1.8.6. 
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.8.6.
 2020-09-23 09:57:08 +03:00
Efraim Flashner
923bb70a1b gnu: glibc-for-bootstrap: Fix patch. 
This is a follow-up to d08f5299e6.

* gnu/packages/patches/glibc-bootstrap-system.patch: Update.
 2020-09-23 08:13:10 +03:00
Paul Garlick
73b67eeea4 gnu: texlive-latex-psnfss: Ensure that font definition files are installed. 
* gnu/packages/tex.scm (texlive-latex-psnfss): Use
simple-texlive-package to install font definition files and
documentation.
 2020-09-22 17:22:27 +01:00
Efraim Flashner
d08f5299e6 gnu: glibc-for-bootstrap: Refresh patch. 
This is a follow-up to d2a01e3b5b.

* gnu/packages/patches/glibc-bootstrap-system.patch: Update for glibc-2.32.
 2020-09-21 18:33:38 +03:00
Ludovic Courtès
dd36f508d5 gnu: node: Update to 10.22.0. 
* gnu/packages/node.scm (node): Update to 10.22.0.
(node-10.22): Remove.  It was referring to 'nghttp2-1.41', which is
unbound.
 2020-09-20 23:56:30 +02:00
Ludovic Courtès
2a3fccf70f gnu: binutils: Update to 2.35.1. 
* gnu/packages/base.scm (binutils): Update to 2.35.1.
[arguments]: Remove #:make-flags.
[properties]: Remove.
(binutils+documentation): Remove.
(binutils-gold): Inherit from BINUTILS.
* gnu/packages/make-bootstrap.scm (%binutils-static)[arguments]:
Remove #:make-flags.
 2020-09-20 23:56:30 +02:00
Ludovic Courtès
855bc05e11 gnu: glibc: Add version 2.31. 
* gnu/packages/base.scm (glibc-2.31): New variable.
* gnu/system/locale.scm (%default-locale-libcs): Add it.
 2020-09-20 23:56:17 +02:00
Ludovic Courtès
3b49071fd1 gnu: gawk-boot0: Inherit from gawk. 
Until now the version number would be wrong.

* gnu/packages/commencement.scm (gawk-boot0): Inherit from GAWK, not
PATCH.
 2020-09-20 13:07:55 +02:00
Ludovic Courtès
32e5ffaa78 gnu: gawk: Update to 5.1.0. 
* gnu/packages/gawk.scm (gawk): Update to 5.1.0.
 2020-09-20 12:44:29 +02:00
Ludovic Courtès
d2a01e3b5b gnu: glibc: Update to 2.32. 
* gnu/packages/base.scm (glibc): Update to 2.32.
[arguments]: Add #:make-flags.
 2020-09-20 01:01:27 +02:00
Ludovic Courtès
18fa433bf5 gnu: gcc-mesboot: Remove redundant input. 
Fixes <https://bugs.gnu.org/43508>.

* gnu/packages/commencement.scm (gcc-mesboot)[native-inputs]: Remove
GCC-MESBOOT1, which is already in %BOOT-MESBOOT4-INPUTS.
 2020-09-19 17:28:47 +02:00
Greg Hogan
d7f776888b gnu: boost: Update to 1.74.0. 
* gnu/packages/boost.scm (boost): Update to 1.74.0.
[source]: Remove patches and defunct substitute.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 22:26:33 +02:00
Greg Hogan
66e3812e2f gnu: llvm: Update to 10.0.1. 
* gnu/packages/llvm.scm (llvm, clang, clang-runtime,
clang-toolchain, lld): Update to 10.0.1.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 22:26:33 +02:00
Greg Hogan
e364758d44 gnu: openblas: Update to 0.3.10. 
* gnu/packages/maths.scm (openblas): Update to 0.3.10.
[source]: Fetch from github.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 22:26:33 +02:00
Greg Hogan
8944f1a4a4 gnu: Python 3: Update to 3.8.5. 
* gnu/packages/python.scm (python-3.8): Update to 3.8.5.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-09-18 14:41:48 -04:00
Tobias Geerinckx-Rice
e943343912 gnu: cups-filters: Wrap with grep. 
* gnu/packages/cups.scm (cups-filters)[inputs]: Add grep.
[arguments]: Wrap all filters with it in $PATH.
 2020-09-18 18:57:59 +02:00
Vagrant Cascadian
7467f9857d gnu: commencement: bash-mesboot0: Remove store file name. 
This is a follow-up to commit d9484fba91, and
fixes "make dist".

* gnu/packages/commencement (bash-mesboot0): Remove reference to store item.
 2020-09-16 23:30:01 +02:00
Maxim Cournoyer
fa8fe90edb Merge remote-tracking branch 'origin/master' into core-updates 2020-09-14 16:17:19 -04:00
Ricardo Wurmus
d60739dff2 gnu: r-quantreg: Update to 5.67. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.67.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
2feb943558 gnu: r-cowplot: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-cowplot): Update to 1.1.0.
[native-inputs]: Add r-knitr.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
90ff99d9c5 gnu: r-rcpparmadillo: Update to 0.9.900.3.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.3.0.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
995641369e gnu: r-ggdendro: Update to 0.1.22. 
* gnu/packages/statistics.scm (r-ggdendro): Update to 0.1.22.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
7e2aa0efba gnu: r-stringi: Update to 1.5.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.5.3.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
98f76dbcfb gnu: r-mass: Update to 7.3-53. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-53.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
1c1b941902 gnu: r-diversitree: Update to 0.9-14. 
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-14.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
8731d274ae gnu: r-seurat: Update to 3.2.1. 
* gnu/packages/cran.scm (r-seurat): Update to 3.2.1.
[propagated-inputs]: Remove r-ape; add r-matrixstats.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
e6711231ed gnu: r-rfast: Update to 2.0.1. 
* gnu/packages/cran.scm (r-rfast): Update to 2.0.1.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
0982ffa898 gnu: r-scatterpie: Update to 0.1.5. 
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.5.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
df2210be8b gnu: r-forecast: Update to 8.13. 
* gnu/packages/cran.scm (r-forecast): Update to 8.13.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
ad10a45225 gnu: r-gamlss: Update to 5.2-0. 
* gnu/packages/cran.scm (r-gamlss): Update to 5.2-0.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
bf37420fe7 gnu: r-parameters: Update to 0.8.5. 
* gnu/packages/cran.scm (r-parameters): Update to 0.8.5.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
515b746945 gnu: r-systemfonts: Update to 0.3.1. 
* gnu/packages/cran.scm (r-systemfonts): Update to 0.3.1.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
3f67fb11cf gnu: r-dalex: Update to 2.0. 
* gnu/packages/cran.scm (r-dalex): Update to 2.0.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
ef59d57841 gnu: r-sf: Update to 0.9-6. 
* gnu/packages/cran.scm (r-sf): Update to 0.9-6.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
b426f79602 gnu: r-deldir: Update to 0.1-29. 
* gnu/packages/cran.scm (r-deldir): Update to 0.1-29.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
0435f7eec1 gnu: r-shinyjs: Update to 2.0.0. 
* gnu/packages/cran.scm (r-shinyjs): Update to 2.0.0.
[native-inputs]: Add r-knitr.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
11f448ba74 gnu: r-etm: Update to 1.1.1. 
* gnu/packages/cran.scm (r-etm): Update to 1.1.1.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
ffe714b5f4 gnu: r-fields: Update to 11.4. 
* gnu/packages/cran.scm (r-fields): Update to 11.4.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
0f93324a83 gnu: r-rnifti: Update to 1.2.2. 
* gnu/packages/cran.scm (r-rnifti): Update to 1.2.2.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
0b73771ad9 gnu: r-misc3d: Update to 0.9-0. 
* gnu/packages/cran.scm (r-misc3d): Update to 0.9-0.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
015e15c836 gnu: r-rcpphnsw: Update to 0.3.0. 
* gnu/packages/cran.scm (r-rcpphnsw): Update to 0.3.0.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
a1e92714ce gnu: r-ggeffects: Update to 0.16.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 0.16.0.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
7975d2c3b8 gnu: r-performance: Update to 0.5.0. 
* gnu/packages/cran.scm (r-performance): Update to 0.5.0.
 2020-09-14 19:07:46 +02:00