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cb6b7ca64ae711c52da98d491661836ba17935ad
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163414 Commits

Author SHA1 Message Date
Ricardo Wurmus
cb6b7ca64a gnu: r-motifmatchr: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.32.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: If848b711ba7d8807d54a7b2ba9d5adb79a304515
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
f51829c2d1 gnu: r-maftools: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.26.0.
[propagated-inputs]: Remove r-zlibbioc.

Change-Id: I742a80319ff9be646f11cb34220e9b64b1358beb
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
958dfc42db gnu: r-tfbstools: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.48.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I2857b5e48dd143175ae44db7632e3ef24916bd96
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
3d91f6a72d gnu: r-cner: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-cner): Update to 1.46.0.
[propagated-inputs]: Add r-seqinfo.

Change-Id: I4682a492df0fe2fb34d2672db7d183f61713602e
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
a6afc4a575 gnu: r-beaddatapackr: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-beaddatapackr): Update to 1.62.0.

Change-Id: Id6bc45885bfe0f30039ef2c2fff6278ed3a7dad3
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
7443c565ff gnu: r-beachmat-hdf5: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-beachmat-hdf5): Update to 1.8.0.

Change-Id: Ic9375c1244d64717f64f2ed186245f7b47131f2a
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
922e9334c1 gnu: r-beachmat: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.26.0.

Change-Id: If898ce7a8949bd67762042e9bfad464497e407b1
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
1797aba70d gnu: r-rhdf5lib: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.32.0.

Change-Id: I104b0ef447b9eb5e370e9eba52850bdbfd9a2b12
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
2dfd0bec3e gnu: r-hdf5array: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.38.0.

Change-Id: I467372065960b1519097003c3b038e053eaff9e1
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
97e237bcf7 gnu: r-hitc: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.54.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I1adb1b1a33ca6b815aeefb5f7fb7d8b2774f5cde
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
9a3212754b gnu: r-h5mread: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-h5mread): Update to 1.2.0.

Change-Id: I70925841ea2f1a5a1f73b53dda5f0dcc948b990e
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
528e1f19ba gnu: r-fithic: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.36.0.

Change-Id: I97f91ffeb67bd30b491fc074a4febc0811bbe6b2
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
a6a2a8a344 gnu: r-fishpond: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.16.0.

Change-Id: I72ecd51878bd5c397e827ac56684513d4f413b0a
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
4c895c454c gnu: r-rgraphviz: Update to 2.54.0. 
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.54.0.

Change-Id: Id136345141264741b662adf043d6afb4e3abcf85
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
87dd8093e2 gnu: r-s4vectors: Update to 0.48.0. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.48.0.
[native-inputs]: Remove r-matrix.

Change-Id: I1183f571248c326677fc49c19eba880aa824d6e7
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
2f81d29fe2 gnu: r-s4arrays: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.10.0.
[propagated-inputs]: Remove r-crayon.

Change-Id: Id59727f851196c3130b589a70a9ef461fca2d631
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
54ef097071 gnu: r-preprocesscore: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.72.0.

Change-Id: I8b11e9752d440430a7c5b150c8655933d15bab28
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
eae44928da gnu: r-icens: Update to 1.82.0. 
* gnu/packages/bioconductor.scm (r-icens): Update to 1.82.0.

Change-Id: I3a17f45278cd403963643232bdd77f939093f28c
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
8a38952f0b gnu: r-m3c: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.32.0.

Change-Id: Ic4fa98380ab6b0b2a6069a18d23a8a78fd385160
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
875edbbcf7 gnu: r-rgreat: Update to 2.12.1. 
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.12.1.

Change-Id: I4466a870b28c7bb925cb1ec878ff867658507c76
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
95a5e84c38 gnu: r-biodist: Update to 1.82.0. 
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.82.0.

Change-Id: I6db0db90d09d264280a48658ce83e1d8cf4a7b86
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
87a11d69c6 gnu: r-biocworkflowtools: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.36.0.

Change-Id: I0b8bbffc7b7e83738ae702072ec7162d731a7953
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
21be32b521 gnu: r-biocset: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.24.0.

Change-Id: Id95bafe016b38f17cf06a5cb59a2fc34c2048451
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
e949a69e10 gnu: r-biocpkgtools: Update to 1.27.12. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.27.12.

Change-Id: Ifd091a7c6c4b3a52442510e8ab6018f4d7f6681e
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
e8a1a26e27 gnu: r-biocor: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.34.0.

Change-Id: Id15823203a50706ca3a3aaf19e891957f846815a
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
6b7057d56e gnu: r-multiassayexperiment: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.36.1.
[propagated-inputs]: Add r-matrixgenerics.
[native-inputs]: Remove r-r-rsp.

Change-Id: Icd702eb14ba39ea27f24214afd5410f6688faf44
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
5aee5423cb gnu: r-grohmm: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.44.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I0818c535258c30592b18be2e094384bdef3210b6
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
5d9d7a3164 gnu: r-experimenthubdata: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-experimenthubdata): Update to 1.36.0.

Change-Id: I6d1dfb0bbddcaa40e313b32327828f270f88459d
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
9c151c02fb gnu: r-experimenthub: Update to 3.0.0. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 3.0.0.

Change-Id: Ia84690cbbc068c9d4ce7342bf7a7278b96776be2
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
4869ec092a gnu: r-biocviews: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.78.0.

Change-Id: I5ac36df894053744c5bb0f58551603af8bb312fa
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
bc12f737c6 gnu: r-biocstyle: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.38.0.

Change-Id: I9526db3923a57ea8e0727c4a179544d0ab257f7c
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
1342508c1a gnu: r-biocgraph: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.72.0.

Change-Id: I92d09fcf4b0742fe49677e1b86757232c39474d9
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
97016e98b6 gnu: r-bioccheck: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.46.0.

Change-Id: If7b32af126584b7cedfe0f963760f4748c9742c1
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
99464bb630 gnu: r-biocbaseutils: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocbaseutils): Update to 1.12.0.

Change-Id: I87d99cb293cfd8a880478bbf0373c814c1d72b11
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
bc97bd411f gnu: r-ebarrays: Update to 2.74.0. 
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.74.0.

Change-Id: I722cb27feec6ad41ad3b2fde0c1788714abe9425
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
82a4f3ef07 gnu: r-reactomepa: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.54.0.

Change-Id: I1191de6b387041355df887c326881cb75a570b24
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
8bf2be75d7 gnu: r-graphite: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.56.0.
[propagated-inputs]: Add r-dir-expiry and r-lifecycle.
[native-inputs]: Add r-a4preproc and r-all.

Change-Id: I2f15d9dd8de268a8d9b50327c8d320032599b9c2
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
a80f9b8719 gnu: r-biobroom: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.42.0.

Change-Id: Ie088b530a0d1b1ed70a0f0d60c67d6fd623e3f73
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
2fce84f3f5 gnu: r-bioassayr: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.48.0.

Change-Id: I47bdd87750a993879998ae48a3adefa61b474b44
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
3fc8dc7fdf gnu: r-fmcsr: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-fmcsr): Update to 1.52.0.

Change-Id: I4aae23d0b992c39ec52c2e2b5957f3f7effcce26
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
2a2c134f7d gnu: r-chemmineob: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-chemmineob): Update to 1.48.0.
[inputs]: Add zlib.
[propagated-inputs]: Remove r-zlibbioc.

Change-Id: Ic024e17fd4457cafc2f42410ac64e38c18627d08
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
d04d5d492c gnu: r-hyperdraw: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.62.0.

Change-Id: Ieaa9ed23377b15df89e5026b8a81f074133181d0
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
faae229469 gnu: r-hypergraph: Update to 1.82.0. 
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.82.0.

Change-Id: I21bf16d32080b3a936683aae28fea6cdcd279d9c
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
6fe6808db0 gnu: r-hybridmtest: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-hybridmtest): Update to 1.54.0.

Change-Id: I350d082d3948d85a6cc0a23e74239b86e5d65785
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
1bcb8d52ce gnu: r-rsbml: Update to 2.68.0. 
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.68.0.

Change-Id: I7d8f05b00d82be61dbdf288f96cb28654125859c
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
55f5fc265e gnu: r-bifet: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.30.0.

Change-Id: Id8bd09db8ecc47e1e0923f6af1549008ed4fa116
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
7afcc0ca0c gnu: r-bicare: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.68.0.

Change-Id: I5b4a4c6cf1a078a868412931a7495d4ea3d80338
 2025-11-29 12:21:19 +01:00
Ricardo Wurmus
c6cbcf50ca gnu: r-acde: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-acde): Update to 1.40.0.

Change-Id: Ic5a56764862232d5210753971d07423e251f3e17
 2025-11-29 12:21:18 +01:00
Ricardo Wurmus
b03ce433c3 gnu: r-acme: Update to 2.66.0. 
* gnu/packages/bioconductor.scm (r-acme): Update to 2.66.0.

Change-Id: I893e3457213a881428c420d301049c35a55978e3
 2025-11-29 12:21:18 +01:00
Ricardo Wurmus
2babf60afe gnu: r-acgh: Update to 1.88.0. 
* gnu/packages/bioconductor.scm (r-acgh): Update to 1.88.0.

Change-Id: I86ddfb3b07c1a99c3160febaa42220507daad7aa
 2025-11-29 12:21:18 +01:00