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72427 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice
cbeafb35e8 gnu: marble-qt: Fix source file name. 
* gnu/packages/geo.scm (marble-qt)[source]: Add a FILE-NAME field.
 2021-07-25 19:53:05 +02:00
Tobias Geerinckx-Rice
199f9e9170 gnu: marble-qt: Fix Git source URL. 
The package failed to build with:
fatal: remote error: Please use the https: protocol to connect to anongit

Fix the protocol & follow the subsequent HTTP redirection.

* gnu/packages/geo.scm (marble-qt)[source]: Fix upstream URL.
 2021-07-25 19:53:05 +02:00
Tobias Geerinckx-Rice
5079aa2afd gnu: r-structuralvariantannotation: Update to 1.8.1. 
The previous 1.8.0 source tarball has vanished.

* gnu/packages/bioconductor.scm (r-structuralvariantannotation):
Update to 1.8.1.
[propagated-inputs]: Add r-genomicfeatures.
 2021-07-25 19:39:11 +02:00
Vinicius Monego
8854acd434 gnu: Add python-hyperopt. 
* gnu/packages/machine-learning.scm (python-hyperopt): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-25 17:56:58 +02:00
Vinicius Monego
aaf94ec750 gnu: Add emacs-ob-async. 
* gnu/packages/emacs-xyz.scm (emacs-ob-async): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-25 17:50:17 +02:00
Arun Isaac
ed9d146734 gnu: oil: Respect #:tests?. 
* gnu/packages/shells.scm (oil)[arguments]: Respect #:tests? in the custom
check phase.
 2021-07-25 20:08:27 +05:30
Felix Gruber
d1318cb4de gnu: oil: Update to 0.9.0. 
* gnu/packages/shells.scm (oil): Update to 0.9.0.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2021-07-25 19:58:05 +05:30
Wiktor Żelazny
769326cf18 gnu: Add marble-qt. 
* gnu/packages/patches/marble-qt-add-qt-headers.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/geo.scm (marble-qt): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-25 13:51:45 +02:00
Sarah Morgensen
a92dfbce30 gnu: gmnisrv: Update to 0-2.32854b7. 
Update to latest commit. gmnisrv uses v3 X509 certificates now, and so
"requires fresh certificates, which could break clients with strict
trust-on-first-use policies."

gnu/packages/web.scm (gmnisrv): Update to 0-2.32854b7.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2021-07-25 15:56:02 +05:30
Morgan Smith
32b02fd99c gnu: emacs-nov-el: Update to 0.3.4. 
* gnu/packages/emacs-xyz.scm (emacs-nov-el): Update to 0.3.4.
[arguments]<#:emacs>: Use emacs for libxml.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-25 12:13:01 +02:00
Raghav Gururajan
f703bef87a gnu: weston: Enable some features. 
* gnu/packages/freedesktop.scm (weston)[inputs]: Add freerdp,
gstreamer and gst-plugins-base.
[configure-flags](backend-rdp,remoting): Remove flags.
(backend-default): New flag.
 2021-07-25 02:00:22 -04:00
Raghav Gururajan
dd3de0c475 gnu: freerdp: Propagate some inputs as per pkg-config files. 
* gnu/packages/rdesktop.scm (freerdp)[inputs]: Move libxkbcommon,
openssl and wayland to ...
[propagated-inputs]: ... here.
 2021-07-25 02:00:22 -04:00
Raghav Gururajan
e0fc091319 gnu: weston: Fix package inputs. 
The newly added inputs are referenced by the package but was missing in
the package definition. Some of these inputs might have been used
by the package indirectly via propagation from other inputs. The moved
inputs are referenced in pkg-config files.

* gnu/packages/freedesktop.scm (weston)[inputs]: Add glib, libdrm,
libpng, libx11 and libxcb. Move libxkbcommon and wayland to ...
[propagated-inputs]: ... here. Add pixman.
 2021-07-25 02:00:22 -04:00
Raghav Gururajan
17a8656bc7 gnu: weston: Update to 9.0.0 and adjust arguments+inputs accordingly. 
* gnu/packages/freedesktop.scm (weston)[version]: Update to 9.0.0.
[configure-flags](c_link_args): New flag.
(simple-dmabuf-drm): Remove flag.
[native-inputs]: Add mscgen.
[inputs]: Add pipewire.
 2021-07-25 01:59:49 -04:00
Tobias Geerinckx-Rice
45881ea747 gnu: perl-http-cookiejar: Update to 0.012. 
This fixes its build which had started to fail due to a time-bomb:

  Expires=Wed, 09 Jun 2021 10:18:14 GMT

in an examples.t test cookie.

* gnu/packages/web.scm (perl-http-cookiejar): Update to 0.012.
 2021-07-25 01:55:45 +02:00
Tobias Geerinckx-Rice
c7b51b799d gnu: esmtp: Fix build with libesmtp >= 1.1.0. 
* gnu/packages/mail.scm (esmtp)[source]: Add patch.
* gnu/packages/patches/esmtp-add-lesmtp.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-07-24 23:59:07 +02:00
Guillaume Le Vaillant
e463e09dc2 services: dhcpd: Fix activation with IPv6 configuration. 
* gnu/services/networking.scm (dhcpd-activation): Pass the IP version
  parameter to dhcpd.
 2021-07-24 15:38:03 +02:00
Pierre Neidhardt
fe0c3aee02 gnu: Add feeder. 
* gnu/packages/lisp-xyz.scm (cl-feeder, ecl-feeder, sbcl-feeder): New variables.
 2021-07-24 11:58:45 +02:00
Tobias Geerinckx-Rice
c3c003be69 gnu: java-xmlpull2: Use mirrored source and archived home page. 
* gnu/packages/xml.scm (java-xmlpull2)[source]: Download from a Gentoo
distfiles mirror.
[home-page]: Point to an archive.org snapshot.
 2021-07-23 23:29:34 +02:00
Marius Bakke
277f58040b gnu: graphviz: Use HTTPS home page. 
* gnu/packages/graphviz.scm (graphviz)[home-page]: Use HTTPS.
 2021-07-23 17:29:34 +02:00
Marius Bakke
379bb236d4 gnu: php: Update to 7.4.21. 
* gnu/packages/php.scm (php): Update to 7.4.21.
[arguments]: Remove trailing #t's.
[native-inputs]: Remove INTLTOOL. Add GETTEXT-MINIMAL.
 2021-07-23 17:29:34 +02:00
Ludovic Courtès
c4918b54bb gnu: tmux-themepack: Tweak description. 
* gnu/packages/tmux.scm (tmux-themepack)[description]: Tweak.
 2021-07-23 17:02:29 +02:00
Matthew James Kraai
efcd669c5a gnu: tmux-themepack: Update to 1.1.0. 
* gnu/packages/tmux.scm (tmux-themepack): Update to 1.1.0.
[arguments]: Install only selected files.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-23 17:02:29 +02:00
Ludovic Courtès
7273b66945 gnu: modules: Avoid FHS file names in 'add.modules'. 
* gnu/packages/package-management.scm (modules)[arguments]: Add
'patch-add-modules' phase.
 2021-07-23 17:02:29 +02:00
Ivan Gankevich
8bcd920c71 gnu: Add modules. 
* gnu/packages/package-management.scm (modules): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-23 17:02:28 +02:00
Ludovic Courtès
1665bb0cec gnu: hpcguix-web: Update to 0.1.0. 
* gnu/packages/web.scm (hpcguix-web): Update to 0.1.0.
[arguments]: In 'wrap-program' phase, change "/bin/run" to
"/bin/hpcguix-web".
[inputs]: Add BASH-MINIMAL.
* gnu/services/web.scm (hpcguix-web-shepherd-service): Run
"/bin/hpcguix-web".
 2021-07-23 17:02:28 +02:00
Andreas Enge
b48bc8953d gnu: pari-gp: Update to 2.13.2. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.13.2.
 2021-07-23 15:28:03 +02:00
Leo Prikler
4e19ad0fde gnu: gnome-maps: Update to 3.38.5. 
* gnu/packages/geo.scm (gnome-maps): Update to 3.38.5.
 2021-07-23 12:41:01 +02:00
Guillaume Le Vaillant
785c96fbe1 gnu: Add radvd. 
* gnu/packages/admin.scm (radvd): New variable.
 2021-07-23 11:33:36 +02:00
宋文武
89ea0918a4 gnu: Add drawterm. 
* gnu/packages/plan9.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2021-07-22 19:52:53 +08:00
Pierre Neidhardt
d98fc80ffb gnu: Add cl-libxml2. 
* gnu/packages/lisp-xyz.scm (cl-libxml2, ecl-cl-libxml2, sbcl-cl-libxml2): New
variables.
 2021-07-22 13:03:52 +02:00
Ricardo Wurmus
aa2686c368 gnu: r-opencpu: Update to 2.2.4. 
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.4.
 2021-07-22 11:37:25 +02:00
Sharlatan Hellseher
9cfa6c3c58 gnu: Add r-opencpu 
* gnu/packages/cran.scm: (r-opencpu): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-07-22 11:37:25 +02:00
Sharlatan Hellseher
2b6dd1bde5 gnu: Add r-protolite 
* gnu/packages/cran.scm: (r-protolite): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2021-07-22 11:37:25 +02:00
Sharlatan Hellseher
c5baff1796 gnu: Add r-webutils 
* gnu/packages/cran.scm (r-webutils): New variable.
 2021-07-22 11:37:21 +02:00
Paul Garlick
b05a1eb5e3 gnu: Add python-dolfin-adjoint. 
* gnu/packages/simulation.scm (python-dolfin-adjoint): New variable.
 2021-07-22 10:03:53 +01:00
jgart
4c63efa5e3 gnu: Add abjad-ext-ipython. 
* gnu/packages/music.scm (abjad-ext-ipython): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-22 11:50:14 +03:00
jgart
ccfcbadd68 gnu: Add abjad-ext-nauert. 
* gnu/packages/music.scm (abjad-ext-nauert): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-22 11:48:45 +03:00
jgart
a909460099 gnu: Add abjad-ext-rmakers. 
* gnu/packages/music.scm (abjad-ext-rmakers): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-22 11:48:41 +03:00
Efraim Flashner
454460ca55 gnu: abjad: Remove obsolete phase. 
* gnu/packages/music.scm (abjad)[arguments]: Remove custom 'patch-source
phase.
 2021-07-22 11:14:33 +03:00
Efraim Flashner
91c42e4767 gnu: abjad: Move lilypond to inputs. 
* gnu/packages/music.scm (abjad)[native-inputs]: Move lilypond ...
[inputs]: ... to here.
 2021-07-22 11:13:57 +03:00
jgart
18f9e21b18 gnu: abjad: Improve description. 
* gnu/packages/music.scm (abjad)[description]: Improve abjad's
description.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-22 11:06:58 +03:00
jgart
dd7c2d2b1d gnu: abjad: Move python-ply to propagated-inputs. 
* gnu/packages/music.scm (abjad)[ntaive-inputs]: Move python-ply ...
[propagated-inputs]: ... to here.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-22 11:05:41 +03:00
jgart
5535d5435e gnu: python-abjad: Rename to abjad. 
* gnu/packages/music.scm (abjad): Rename from python-abjad.
(python-abjad): Keep as deprecated package.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-22 11:04:10 +03:00
Efraim Flashner
fd8aea010f gnu: python-pysam: Make the check phase honor the tests? argument. 
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Adjust
custom 'check phase to skip tests when #:tests is #f.
 2021-07-22 10:58:22 +03:00
Efraim Flashner
877792a6a7 gnu: python-pysam: Update to 0.16.0.1. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.16.0.1.
[arguments]: Update custom 'check phase.
[propagated-inputs]: Replace htslib-1.9 with 1.10.
[native-inputs]: Add python-pytest. Replace samtools-1.9 with 1.10,
bcftools-1.9 with 1.10.
(bcftools-1.9): Replace with bcftools-1.10.
[native-inputs]: Replace htslib-1.9 with 1.10.
(samtools-1.9): Replace with samtools-1.10.
[inputs]: Replace htslib-1.9 with 1.10.
 2021-07-22 10:57:41 +03:00
Efraim Flashner
cc4906d13b gnu: Add htslib-1.10. 
* gnu/packages/bioinformatics.scm (htslib-1.10): New variable.
 2021-07-22 10:50:58 +03:00
Efraim Flashner
309b38bed6 gnu: python-biopython: Update to 1.73. 
* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.73.
 2021-07-22 09:14:12 +03:00
Eric Bavier
55db762b31 gnu: onionshare: Update to 2.3.2. 
* gnu/packages/tor.scm (onionshare-cli, onionshare): Update to 2.3.2.
(onionshare)[inputs]: Add python-colorama.
[arguments]: Insert "import pytest" for later "pytest.mark.skip".
 2021-07-21 23:08:14 -05:00
Joseph LaFreniere
e9d47ee718 gnu: Add emacs-seeing-is-believing. 
* gnu/packages/emacs-xyz.scm (emacs-seeing-is-believing): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-22 00:02:33 +02:00