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116,338 Commits 73 Branches 40 Tags
d54faf155aeeeb2aceb5cc19f141c2b8d0e0720a
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118 Commits

Author SHA1 Message Date
Ricardo Wurmus
4557c83a7d gnu: python-distributed: Update to 2023.4.1. 
* gnu/packages/python-science.scm (python-distributed): Update to 2023.4.1.
[source]: Remove snippet.
[arguments]: Update build phase 'versioneer; restore 'sanity-check phase;
simplify custom 'check phase; add 'fix-pytest-config phase; use #:test-flags.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-importlib-metadata.
 2023-05-11 15:59:22 +02:00
Ricardo Wurmus
96c51a9dbf gnu: python-scikit-optimize: Fix build with newer numpy and sklearn. 
* gnu/packages/patches/python-scikit-optimize-1148.patch,
gnu/packages/patches/python-scikit-optimize-1150.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/python-science.scm (python-scikit-optimize)[source]: Fetch with
git and apply patches.
 2023-05-10 19:27:07 +02:00
Efraim Flashner
12c529c071 gnu: python-bottleneck: Honor #:tests? flag. 
* gnu/packages/python-science.scm (python-bottleneck)[arguments]: Adjust
custom 'check phase to honor the #:tests? flag.
 2023-05-08 12:42:10 +03:00
Efraim Flashner
4a23812c7c gnu: python-bottleneck: Update to 1.3.7. 
* gnu/packages/python-science.scm (python-bottleneck): Update to 1.3.7.
 2023-05-08 12:42:09 +03:00
Ricardo Wurmus
5409ae48af gnu: python-distributed: Fix build. 
* gnu/packages/python-science.scm (python-distributed)[build-system]: Use
pyproject-build-system.
[arguments]: Hide deprecation warnings from tornado, because they break almost
all tests; disable three more tests.
 2023-04-26 11:17:41 +02:00
Maxim Cournoyer
3bacd3c76a Merge branch 'master' into core-updates. 
Conflicts:
	gnu/local.mk
	gnu/packages/build-tools.scm
	gnu/packages/certs.scm
	gnu/packages/check.scm
	gnu/packages/compression.scm
	gnu/packages/cups.scm
	gnu/packages/fontutils.scm
	gnu/packages/gnuzilla.scm
	gnu/packages/guile.scm
	gnu/packages/ibus.scm
	gnu/packages/image-processing.scm
	gnu/packages/linux.scm
	gnu/packages/music.scm
	gnu/packages/nss.scm
	gnu/packages/pdf.scm
	gnu/packages/python-xyz.scm
	gnu/packages/qt.scm
	gnu/packages/ruby.scm
	gnu/packages/shells.scm
	gnu/packages/tex.scm
	gnu/packages/video.scm
	gnu/packages/vulkan.scm
	gnu/packages/web.scm
	gnu/packages/webkit.scm
	gnu/packages/wm.scm
 2023-04-14 17:15:08 -04:00
Maxim Cournoyer
a3bfb86738 gnu: python-scipy: Update to 1.10.1. 
* gnu/packages/python-science.scm (python-scipy): Update to 1.10.1.
[build-system]: Use pyproject-build-system.
[arguments]: Add #:build-backend argument.
Remove loosen-requirements, build and install phases.
[native-inputs]: Remove python-pypa-build.
 2023-04-11 17:22:35 -04:00
Ricardo Wurmus
896982f357 gnu: python-scikit-allel: Use pyproject-build-system. 
* gnu/packages/python-science.scm (python-scikit-allel): Move up to create
alphabetic order.
[build-system]: Use pyproject-build-system.
[arguments]: Provide test flags instead of overriding 'check phase; split out
build step into new 'build-ext phase.  Disable roh_mhmm tests.
 2023-03-24 18:23:01 +01:00
Ricardo Wurmus
6d132c5ebf gnu: Add python-scikit-optimize. 
* gnu/packages/python-science.scm (python-scikit-optimize): New variable.
 2023-03-24 18:03:30 +01:00
Lars-Dominik Braun
34f684371e gnu: Add python-libneuroml. 
* gnu/packages/python-science.scm (python-libneuroml): New variable.
 2023-03-21 13:58:42 +01:00
Lars-Dominik Braun
9f882daf11 gnu: Add python-pylems. 
* gnu/packages/python-science.scm (python-pylems): New variable.
 2023-03-21 13:56:47 +01:00
Antero Mejr
e24b9b42bc gnu: Add python-pydicom. 
* gnu/packages/python-science.scm (python-pydicom): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-08 16:11:45 +01:00
Sharlatan Hellseher
7f380a2e26 gnu: python-sgp4: Move to astronomy. 
* gnu/packages/astronomy.scm: (python-sgp4): Move here from python-science.scm.
  [description]: Expand description, annotate acronyms, add link to CelesTrak.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-12-05 22:22:20 +01:00
Sharlatan Hellseher
6468d9c131 gnu: python-sgp4: Update to 2.21. 
The latest version passes build on aarch64-linux system.

* gnu/packages/python-science.scm (python-sgp4): Update to 2.21.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-12-05 22:22:20 +01:00
Navid Afkhami
9ddc4e5b03 gnu: python-msgpack-numpy: Update to 0.4.8. 
* gnu/packages/python-science.scm (python-msgpack-numpy): Update to 0.4.8.
 2022-12-02 15:04:15 +01:00
Navid Afkhami
ba8679fb24 gnu: Add python-tspex. 
* gnu/packages/python-science.scm (python-tspex): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2022-11-11 12:12:04 +01:00
Ricardo Wurmus
b19c12c2d7 gnu: Add python-pyts. 
* gnu/packages/python-science.scm (python-pyts): New variable.
 2022-11-04 19:53:31 +01:00
jgart
70cac2829f gnu: Add python-simple-pid. 
* gnu/packages/python-science.scm (python-simple-pid): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-10-18 14:41:10 +02:00
Marius Bakke
f66067febc Merge branch 'master' into staging 2022-09-29 07:26:37 +02:00
Guillaume Le Vaillant
05c13b3149 gnu: Add python-simplespectral. 
* gnu/packages/python-science.scm (python-simplespectral): New variable.
 2022-09-28 11:31:49 +02:00
Maxim Cournoyer
3c6e220d81 Merge branch 'master' into staging. 
With resolved conflicts in:
	gnu/local.mk
	gnu/packages/crates-io.scm
 2022-09-27 14:27:28 -04:00
Ricardo Wurmus
ab6931483b gnu: Add python-vaex-core. 
* gnu/packages/python-science.scm (python-vaex-core): New variable.
 2022-09-25 21:24:34 +02:00
Marius Bakke
2266ec5eb1 gnu: python-cython: Remove duplicate version. 
* gnu/packages/python-xyz.scm (python-cython-0.29.32): Remove variable.
* gnu/packages/python-science.scm (python-pandas)[native-inputs]: Change from
PYTHON-CYTHON-0.29.32 to PYTHON-CYTHON.
 2022-09-18 16:26:18 +02:00
Marius Bakke
ce3b51a4c6 gnu: python-pandas: Update to 1.4.4. 
* gnu/packages/python-science.scm (python-pandas): Update to 1.4.4.
[native-inputs]: Change from PYTHON-CYTHON to PYTHON-CYTHON-0.29.32.
 2022-09-18 16:18:36 +02:00
Marius Bakke
888dfc8eb6 gnu: python-scipy: Update to 1.9.1. 
* gnu/packages/python-science.scm (python-scipy): Update to 1.9.1.
[source]: Switch to GIT-FETCH.
[outputs]: Remove.
[arguments]: Don't disable Pythran.  Don't configure OpenBLAS which is now
discovered by pkg-config.  Do a "manual" PEP 517 style build.  Make
install-doc phase conditional on the presence of Sphinx.  Simplify tests.
[propagated-inputs]: Add PYTHON-PYTHRAN.
[native-inputs]: Remove PERL, WHICH, PYTHON-NUMPYDOC,
PYTHON-PYDATA-SPHINX-THEME, PYTHON-SPHINX, and PYTHON-SPHINX-PANELS.  Add
GCC, PKG-CONFIG, PYTHON-PYPA-BUILD and PYTHON-MESON.
 2022-09-16 18:42:21 +02:00
Marius Bakke
8bd7cd34bf gnu: python-pingouin: Don't pin scikit-learn version. 
* gnu/packages/python-science.scm (python-pingouin)[arguments]: Add phase.
 2022-09-14 21:08:34 +02:00
Marius Bakke
e3ed1d09f9 gnu: python-pingouin: Update to 0.5.2. 
* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.2.
[arguments]: Adjust outdated substitution.
 2022-09-11 23:41:51 +02:00
Christopher Baines
ad1d3f98b1 gnu: Add comments to the bottom of a few package modules. 
This will hopefully discourage patches which add new packages to the bottom of
files, as this increases the likelihood of conflicts when applying patches.

If there are more specific ways that packages should be arranged in specific
modules, this message can be updated accordingly.

* gnu/packages/bioconductor.scm: Add comment discouraging adding packages to
the bottom of the file.
* gnu/packages/bioinformatics.scm: ditto.
* gnu/packages/cran.scm: ditto.
* gnu/packages/crates-io.scm: ditto.
* gnu/packages/emacs-xyz.scm: ditto.
* gnu/packages/golang.scm: ditto.
* gnu/packages/guile-xyz.scm: ditto.
* gnu/packages/haskell-xyz.scm: ditto.
* gnu/packages/java.scm: ditto.
* gnu/packages/julia-xyz.scm: ditto.
* gnu/packages/lisp-xyz.scm: ditto.
* gnu/packages/ocaml.scm: ditto.
* gnu/packages/perl.scm: ditto.
* gnu/packages/python-science.scm: ditto.
* gnu/packages/python-xyz.scm: ditto.
* gnu/packages/ruby.scm: ditto.
* gnu/packages/tex.scm: ditto.
 2022-09-10 10:45:27 +01:00
Paul A. Patience
29491482a1 gnu: python-pyvista: Update to 0.36.1. 
* gnu/packages/python-science.scm (python-pyvista): Update to 0.36.1.

Signed-off-by: Marius Bakke <marius@gnu.org>
 2022-09-07 22:02:40 +02:00
Paul A. Patience
7e13054373 gnu: python-pyvista: Update to 0.35.2. 
* gnu/packages/python-science.scm (python-pyvista): Update to 0.35.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-08-02 20:59:15 +03:00
Ricardo Wurmus
4bc130dcc0 gnu: Add python-geosketch. 
* gnu/packages/python-science.scm (python-geosketch): New variable.
 2022-08-02 14:37:38 +02:00
Ricardo Wurmus
d4b0dc047f gnu: Add python-fbpca. 
* gnu/packages/python-science.scm (python-fbpca): New variable.
 2022-08-02 14:37:38 +02:00
Paul A. Patience
a15b769c2f gnu: python-pyvista: Update to 0.35.1. 
* gnu/packages/python-science (python-pyvista): Update to 0.35.1.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-15 09:46:51 +01:00
Ricardo Wurmus
684c718e6a gnu: Add python-opt-einsum. 
* gnu/packages/python-science.scm (python-opt-einsum): New variable.
 2022-07-08 18:41:35 +02:00
Antero Mejr
486251d440 gnu: Add python-deepdish. 
* gnu/packages/python-science.scm (python-deepdish): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-03 16:04:23 +02:00
Greg Hogan
e9e05dd129 gnu: python-modin: Update to 0.15.1. 
* gnu/packages/python-science.scm (python-modin): Update to 0.15.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-06-26 01:00:18 +02:00
Vinicius Monego
aa718586fa gnu: python-scikit-image: Update to 0.19.3. 
* gnu/packages/python-science.scm (python-scikit-image): Update to 0.19.3.
 2022-06-18 13:07:09 -03:00
Eric Bavier
b68c87f86a gnu: Add PyGLM. 
* gnu/packages/python-science.scm (python-pyglm): New variable.
 2022-06-08 23:27:47 -05:00
Maxim Cournoyer
30413f1180 gnu: Remove python2-scipy. 
* gnu/packages/python-science.scm (python2-scipy): Delete variable.
(python-scipy)[properties]: Delete field.
 2022-05-31 14:53:35 -04:00
Maxim Cournoyer
b827d0f7b3 gnu: Remove python2-weave. 
* gnu/packages/python-science.scm (python2-weave): Delete variable.
 2022-05-31 14:52:37 -04:00
Maxim Cournoyer
b3c7d69fa0 gnu: Remove python2-pandas. 
* gnu/packages/python-science.scm (python2-pandas): Delete variable.
(python-pandas): Delete related python2-variant property.
 2022-05-31 14:52:25 -04:00
Ricardo Wurmus
07909eb092 gnu: python-distributed: Update to 2022.05.2. 
* gnu/packages/python-science.scm (python-distributed): Update to 2022.05.2.
[arguments]: Remove 'sanity-check phase; adjust 'check phase.
[propagated-inputs]: Add python-urllib3.
[native-inputs]: Add python-pytest-timeout and python-flaky.
 2022-05-31 15:18:22 +02:00
Wiktor Zelazny
acb08304c8 gnu: Add python-gpy. 
* gnu/packages/python-science.scm (python-gpy): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-29 23:56:06 +02:00
Wiktor Zelazny
6400f08d07 gnu: Add python-paramz. 
* gnu/packages/python-science.scm (python-paramz): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-29 23:56:05 +02:00
Wiktor Zelazny
6dacd15381 gnu: Add python-climin. 
* gnu/packages/python-science.scm (python-climin): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-29 23:56:05 +02:00
Paul A. Patience
4ab5c8348d gnu: Add python-pyvista. 
* gnu/packages/python-science.scm (python-pyvista): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-23 16:24:47 +02:00
Ricardo Wurmus
d1bdead838 gnu: Add python-aplus. 
* gnu/packages/python-science.scm (python-aplus): New variable.
 2022-05-20 20:42:53 +02:00
Maxim Cournoyer
cecf195347 gnu: python-pingouin: Update to 0.5.1. 
* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.1.
 2022-05-12 12:46:06 -04:00
Maxim Cournoyer
c359a4fabb gnu: python-pandas: Update to 1.4.2. 
* gnu/packages/python-science.scm (python-pandas): Update to 1.4.2.
 2022-05-12 12:45:55 -04:00
Maxim Cournoyer
8b390a8750 gnu: python-pandas: Build and run tests in parallel. 
* gnu/packages/python-science.scm (python-pandas)
[phases]{enable-parallel-build}: New phase.
{check}: Add xdist -n option.  Skip test_memory_usage test.
[native-inputs]: Add python-pytest-xdist.
 2022-05-12 12:45:55 -04:00