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3336 Commits

Author SHA1 Message Date
Ricardo Wurmus
b44debeed4 gnu: r-rcpparmadillo: Update to 15.2.2-1. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 15.2.2-1.

Change-Id: I93d73f3cde00db8fb4ed5b8e693255e2b3eda582
 2025-11-29 12:21:33 +01:00
Ricardo Wurmus
50db9628fc gnu: r-sfsmisc: Update to 1.1-23. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-23.
[properties]: Record updater-extra-propagated-inputs.

Change-Id: Ifa7d0da30f3afa2441e41d1d16f7784254e0cf98
 2025-11-29 12:21:31 +01:00
Ricardo Wurmus
3b5f808fea gnu: r-readr: Update to 2.1.6. 
* gnu/packages/statistics.scm (r-readr): Update to 2.1.6.
[native-inputs]: Add r-dplyr, r-spelling, and r-withr.

Change-Id: I4be3fe4c30747a282cb03a1e825074d5cd2583f2
 2025-11-29 12:20:15 +01:00
Ricardo Wurmus
a0ac846ac9 gnu: r-simr: Update to 1.0.8. 
* gnu/packages/statistics.scm (r-simr): Update to 1.0.8.
[native-inputs]: Remove r-testthat.

Change-Id: I0167293c822582f3b5420b4477e263216316e66c
 2025-11-29 12:20:10 +01:00
Ricardo Wurmus
098b7b9e66 gnu: r-tclust: Update to 2.1-2. 
* gnu/packages/statistics.scm (r-tclust): Update to 2.1-2.

Change-Id: I4948cd2046d09011dc248dc41338b919ae44f80c
 2025-11-29 12:20:10 +01:00
Ricardo Wurmus
dd72b03a53 gnu: r-trimcluster: Update to 0.2-0. 
* gnu/packages/statistics.scm (r-trimcluster): Update to 0.2-0.
[propagated-inputs]: Add r-tclust.
[native-inputs]: Add r-fpc.

Change-Id: Ice75329475e0a540e28cb8818a738da3da39cf18
 2025-11-29 12:20:10 +01:00
Ricardo Wurmus
6945e681e4 gnu: r-statmod: Update to 1.5.1. 
* gnu/packages/statistics.scm (r-statmod): Update to 1.5.1.

Change-Id: I9f02276c2a115bdda14a0e5df204931a03722324
 2025-11-29 12:20:10 +01:00
Ricardo Wurmus
867cfdcd97 gnu: r-runit: Update to 0.4.33.1. 
* gnu/packages/statistics.scm (r-runit): Update to 0.4.33.1.

Change-Id: I72515778295f285be09bc1aeef1bb9254743fd0a
 2025-11-29 12:20:10 +01:00
Ricardo Wurmus
e6a5be0b83 gnu: r-rsqlite: Update to 2.4.4. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.4.4.

Change-Id: I7f6118a0a6651d1b9b344f6ff6b012b8a5aeb7ef
 2025-11-29 12:20:10 +01:00
Ricardo Wurmus
f12f7053db gnu: r-rcpparmadillo: Update to 15.0.2-2. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 15.0.2-2.

Change-Id: I964dcdca5f8aa1dc3ace08f2ed69702d21087d7d
 2025-11-29 12:20:10 +01:00
Ricardo Wurmus
74babcaa8b gnu: r-rmarkdown: Update to 2.30. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.30.
[properties]: Record updater-ignored-native-inputs.
[native-inputs]: Add r-data-table, r-withr, and r-xml2.

Change-Id: I85b39aedbe94c6ffbe31815031d4c2d5a383ead3
 2025-11-29 12:19:17 +01:00
Ricardo Wurmus
28e03d827b gnu: r-rprojroot: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-rprojroot): Update to 2.1.1.
[properties]: Record updater-ignored-native-inputs.
[native-inputs]: Add r-rlang and r-withr.

Change-Id: I67645f75412b7352e41c9b7c4914ba262b0a714b
 2025-11-29 12:19:17 +01:00
Ricardo Wurmus
3f2992265e gnu: r-robustbase: Update to 0.99-6. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-6.
[properties]: Record updater-extra-native-inputs and
updater-ignored-native-inputs.
[arguments]: Enable tests; add phase 'delete-bad-tests.
[native-inputs]: Add r-cluster, r-lattice, r-mass, r-matrix, r-reshape2,
r-sfsmisc, and r-xtable.

Change-Id: Ia6d88889b8a57e6b3657b788c4807821eadfc30f
 2025-11-29 12:19:12 +01:00
Ricardo Wurmus
bc9ddfe0c5 gnu: r-sfsmisc: Update to 1.1-22. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-22.
[arguments]: Add phase 'patch-reference-to-procps.
[propagated-inputs]: Add procps.

Change-Id: I46edb490816bcea7a489181f788de565d09ffe37
 2025-11-29 12:19:12 +01:00
Ricardo Wurmus
b7b13b8c67 gnu: r-roxygen2: Update to 7.3.3. 
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.3.3.
[native-inputs]: Add r-digest, r-magrittr, r-r-methodss3, r-r-oo, and
r-rmarkdown.

Change-Id: Ie6fb18891e9c5cf5a3b755de51384ccfd432e0a6
 2025-11-29 12:19:12 +01:00
Ricardo Wurmus
fdbbd8d90b gnu: r-tibble: Update to 3.3.0. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.3.0.
[properties]: Record updater-ignored-native-inputs.
[propagated-inputs]: Remove r-fansi; add r-cli.
[native-inputs]: Add r-withr.

Change-Id: If94cd859f1bc7f11aebd5f31e2f0948599118343
 2025-11-29 12:19:12 +01:00
Ricardo Wurmus
9243d12d28 gnu: r-testthat: Update to 3.3.0. 
* gnu/packages/statistics.scm (r-testthat): Update to 3.3.0.
[propagated-inputs]: Move r-digest from here...
[native-inputs]: ...to here.
[arguments]: Enable all tests.
[properties]: Record updater-extra-native-inputs.

Change-Id: I18ef629a1a221861edd953b0f56ca92169e235fc
 2025-11-29 12:19:12 +01:00
Ricardo Wurmus
1617d61a08 gnu: r-rversions: Update to 3.0.0. 
* gnu/packages/statistics.scm (r-rversions): Update to 3.0.0.
[propagated-inputs]: Remove r-xml2.
[native-inputs]: Add r-webfakes and r-withr.

Change-Id: I3c2b6cfa9ed011aeb311d56c023b016eb6a08fc6
 2025-11-29 12:19:12 +01:00
Romain GARBAGE
d644ca904b gnu: python-openturns: Disable flaky tests. 
* gnu/packages/statistics.scm (python-openturns): Disable flaky tests.

Change-Id: I3d582c51bbfc47f437f0cda789891c0e99991842
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-11-23 12:09:26 +01:00
Sharlatan Hellseher
b046bf9f2f gnu: python-radian: Reduce closure size. 
* gnu/packages/statistics.scm (python-radian)[native-inputs]: Remove
python-coverage and python-wheel.

Change-Id: Ia29ed5621c9d008705963fbb1ad68d949fa740cb
 2025-11-20 01:06:40 +00:00
Sharlatan Hellseher
6fadea1fe5 gnu: python-emcee: Reduce closure size. 
* gnu/packages/statistics.scm (python-emcee)[native-inputs]: Remove
python-coverage, python-pytest-cov, and python-wheel.

Change-Id: I6a18dc207fa2dbf5b61fc7bb2495e3a9acc66820
 2025-11-20 01:06:40 +00:00
Ricardo Wurmus
157f2e8732 gnu: r-with-tests: Update to 4.5.2. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.5.2.

Change-Id: I6b2fdde29812d9a7088cbd339771d4ee03b62467
 2025-11-13 11:16:43 +01:00
Ricardo Wurmus
f824329b5a gnu: r-with-tests: Update to 4.5.1. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.5.1.

Change-Id: I0033a9827fa14b74659a2d037851ca1c52add701
 2025-11-13 11:16:43 +01:00
Simon Tournier
2e4f137a34 gnu: r-swne: Replace deprecated r-liger by r-rliger. 
* gnu/packages/statistics.scm (r-swne)[propagated-inputs]: Replace deprecated
r-liger by r-rliger.

Change-Id: If2aab2df369456518484edb3035e637ac0ca7c08
 2025-11-13 11:16:43 +01:00
Ludovic Courtès
ad461613d9 gnu: Use self-references to inputs for #:disallowed-references. 
This allows ‘package-input-rewriting’ to operate as expected on these
packages.  Failing that, rewritten packages would still carry references to
non-rewritten packages in #:disallowed-references.

* gnu/packages/admin.scm (wpa-supplicant-gui): Use ‘this-package-native-input’
for #:disallowed-references.
* gnu/packages/fontutils.scm (freetype): Likewise.
* gnu/packages/glib.scm (glib-minimal): Likewise.
* gnu/packages/gnome.scm (cogl, gnome-shell): Likewise.
* gnu/packages/groff.scm (groff-minimal): Likewise.
* gnu/packages/gstreamer.scm (gstreamer): Likewise.
* gnu/packages/gtk.scm (gtk+): Likewise.
* gnu/packages/inkscape.scm (inkscape/pinned): Likewise.
* gnu/packages/java.scm (icedtea-8, openjdk9, openjdk10)
(openjdk11): Likewise.
* gnu/packages/linux.scm (f2fs-tools/static): Likewise.
* gnu/packages/man.scm (man-db): Likewise.
* gnu/packages/openldap.scm (389-ds-base): Likewise.
* gnu/packages/qt.scm (qtbase-5): Likewise.
* gnu/packages/rrdtool.scm (rrdtool): Likewise.
* gnu/packages/rust.scm (rust-bootstrapped-package): Likewise.
* gnu/packages/statistics.scm (r-with-tests): Likewise.
(r-minimal): Likewise.
* gnu/packages/texinfo.scm (info-reader): Likewise.
* gnu/packages/tls.scm (gnutls): Likewise.
(openssl-1.1): Likewise.
* gnu/packages/version-control.scm (git-minimal): Likewise.
(git): Likewise.
(gource): Likewise.
* gnu/packages/web.scm (mod-wsgi): Likewise.
* gnu/packages/xfce.scm (xfdesktop): Likewise.
* gnu/packages/perl.scm (perl-libtime-parsedate): Update comment.
* gnu/packages/video.scm (v4l-utils-minimal): Add FIXME comment.

Change-Id: I118ecd5894c24c53ec52c9208b0025ccfa3dd68a
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2025-11-09 22:13:37 +01:00
Ayan Das
7a877935ac gnu: python-pgmpy: Skip flaky test_get_edges. 
* gnu/packages/statistics.scm (python-pgmpy): Skip flaky test_get_edges.
  [arguments]: In #:test-flags, add "test_get_edges" to the pytest -k skip
  list.  Add a brief comment about the FileNotFoundError in tearDown removing
  missing 'dog_problem.xml'.
  [native-inputs]: Drop python-wheel.

Change-Id: I48609db063adb7d99c0813013fb95c049e874964
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-11-04 12:12:57 +00:00
Sharlatan Hellseher
cbad86a985 gnu: python-cython-3: Mark as deprecated. 
This is a followup to 941b6ff1c1 commit.

Replace all python-cython-3 occurrences with python-cython.

* gnu/packages/python-xyz.scm (python-cython-3): Deprecate variable.

* gnu/packages/algebra.scm (python-fpylll, python-flint)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/astronomy.scm (python-astropy, python-astroscrappy,
python-halotools, python-healpy, python-libstempo, python-lofar-h5plot,
python-losoto, python-photutils, python-pyxsim, python-regions,
python-reproject, python-sncosmo, python-sndata, python-stcal,
python-yt)[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/bioinformatics.scm (macs-3, python-pyrodigal):
[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/build-tools.scm (meson-python)[propagated-inputs]: Remove
python-cython-3; add python-cython.
[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/databases.scm: (python-adbc-driver-manager,
python-psycopg, python-pyarrow)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/finance.scm (python-ta-lib)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/game-development.scm (python-pygame-ce)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/geo.scm (python-pyogrio, python-cf-units)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/machine-learning.scm: (python-scikit-learn,
python-opentsne)[native-inputs]: Remove python-cython-3; add
python-cython.

* gnu/packages/maths.scm: (python-cylp, python-petsc4py,
python-primecountpy, python-slepc4py)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/python-check.scm (python-line-profiler)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/python-compression.scm (python-blosc2)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/python-graphics.scm (python-vispy)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/python-science.scm: (python-pykdtree, python-qutip,
python-scikit-misc, python-scikit-surprise, python-pandas-2,
python-vaex-core)[native-inputs]: Remove python-cython-3; add
python-cython.

* gnu/packages/python-web.scm: (python-aiohttp, python-falcon,
python-yarl, python-uvloop)[native-inputs]: Remove python-cython-3; add
python-cython.

* gnu/packages/python-xyz.scm: (python-logbook, python-netcdf4,
python-pyyaml, python-propcache, python-pywavelets, python-symengine,
python-cysignals, python-pyemd, python-rbfly)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/sagemath.scm: (python-cypari2, python-pplpy, sage)
[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/sphinx.scm (python-sphinx)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/statistics.scm: (python-statsmodels, python-pyreadstat):
[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/tor.scm (onionshare-cli)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/xorg.scm (xpra)[native-inputs]: Remove python-cython-3;
add python-cython.

Change-Id: I38038d2ab18e6a7b549070083d6e4c5beb8b0293
 2025-10-24 11:05:28 +01:00
Artyom V. Poptsov
ce8752ef83 gnu: xlispstat: Fix compilation with modern GCC versions. 
Package compilation would fail with modern GCC due to deprecated features that
are used in the package source code.  This patch updates the package to
modernize the source code to fix compilation errors (see
<https://github.com/jhbadger/xlispstat/pull/1>.)

* gnu/packages/statistics.scm (xlispstat): Fix compilation with GCC version 14
or newer.
[source]: Add a patch.
* gnu/packages/patches/xlispstat-fix-compilation-with-modern-gcc.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Register the patch.

Change-Id: I0f8b194887298fff196be7426a0de7eb247a8c48
 2025-10-24 06:22:58 +03:00
Andreas Enge
a074702c6b gnu: pspp: Fix build. 
* gnu/packages/statistics.scm (pspp)[inputs]: Remove
gtksourceview-3; add gtksourceview-4.
[native-inputs]: Add glibc-locales.

Fixes: guix/guix#3019
Change-Id: Ib208da59672189a8f5920ea1796f95798d60180d
 2025-10-22 20:51:08 +02:00
Sharlatan Hellseher
bd394962ee gnu: python-rpy2: Delete sanity-check. 
* gnu/packages/statistics.scm (python-rpy2) [arguments] <phases>: Delete
'sanity-check.
[propagated-inputs]: Remove python-six.
[native-inputs]: Remove python-coverage, python-ipython, python-numpy,
python-pandas, python-pytest-cov, and python-wheel.

Change-Id: Iac85261a8236d5b9746671a373da7fd6824c1a70
 2025-09-25 09:36:59 +01:00
Sharlatan Hellseher
b79fbf27b8 gnu: python-setuptools-next: Set to python-setuptools. 
Replace all python-setuptools-next occurrences with python-setuptools.

* gnu/packages/python-build.scm (python-setuptools-next): Set to
python-setuptools.

Change-Id: I9e5e0881310d160ec56be785f2dd2140364fa8e5
 2025-09-25 09:36:24 +01:00
Sharlatan Hellseher
d8e2caa60b gnu: python-hdmedians: Switch to Pytest backend. 
* gnu/packages/statistics.scm (python-hdmedians)[source]<patch>: Add
patch fixing tests.
[arguments] <test-flags>: Provide "--pyargs" option to tests against
compiled module.
<phases>: Remove 'build-extensions.
[native-inputs]: Remove python-nose; add python-pytest.

* gnu/packages/patches/python-hdmedians-replace-nose.patch: New file
* gnu/local.mk (dist_patch_DATA): Register new patch.

Change-Id: I86c577a55c2c273bd6504d225af8056f65593f77
 2025-09-25 09:36:20 +01:00
Maxim Cournoyer
10482f731e Reapply "Update Maxim's email address." 
This reverts commit a7db92d9b3, this time with
the more careful command, to avoid a world rebuild:

grep -rl --exclude-dir=build --exclude-dir=patches --exclude=ld-wrapper.in \
  --exclude=sitecustomize.py --exclude=guix-emacs.el maxim.cournoyer@gmail.com |
  xargs sed -i 's/maxim.cournoyer@gmail.com/maxim@guixotic.coop/g'

Change-Id: I0871f5cf9ace79e34e78e24154d0da6ea95a3a91
 2025-09-18 13:44:12 +09:00
Maxim Cournoyer
a7db92d9b3 Revert "Update Maxim's email address." 
This reverts commit d0d87a744d. Oops! This
caused a world rebuild.

Change-Id: I25fff644b2b61d0ee93d69b457b04c72b5b74d15
 2025-09-18 12:07:31 +09:00
Maxim Cournoyer
d0d87a744d Update Maxim's email address. 
The change was automated via:

  git grep -l maxim.cournoyer@gmail.com |
    xargs sed -i 's/maxim.cournoyer@gmail.com/maxim@guixotic.coop/g'

* .mailmap: New entry.

Change-Id: Iaa88b1e51c94159c49138fb43910badb990eb169
 2025-09-18 08:05:19 +09:00
Sharlatan Hellseher
e3f2f81f12 gnu: packages/statistics: Sort. 
* gnu/packages/statistics.scm (python-altair, and python-arviz): Sort
variables alphabetically.

Change-Id: If29cab57cff8385e5b3fb0d636c9c7419965c901
 2025-08-12 20:45:06 +01:00
Sharlatan Hellseher
d340b071ce gnu: packages/statistics: Sort. 
* gnu/packages/statistics.scm (jags, java-jdistlib, libxls,
python-chaospy, python-emcee, readstat, and xlispstat): Sort variables
alphabetically.

Change-Id: I9ea5402a11ca2bf9d087d83b13f78252eb3c2c41
 2025-08-12 19:18:46 +01:00
Rikard Nordgren
7c2b5260bc gnu: Add r-vpc. 
* gnu/packages/statistics.scm (r-vpc): New variable.

Change-Id: I0b3df19a2e8cfb43de51f70e78730f4480929d24
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-08-12 16:53:54 +01:00
Sharlatan Hellseher
bf812960e5 gnu: Add python-dcor. 
* gnu/packages/statistics.scm (python-dcor): New variable.

Change-Id: I87d8562b9e0cc3a6d2faf28f38c8d9b3f757c618
 2025-08-07 18:33:38 +01:00
Sharlatan Hellseher
debc80b4d4 gnu: python-statsmodels: Update to 0.14.4. 
* gnu/packages/statistics.scm (python-statsmodels): Update to 0.14.4.
  [native-inputs]: Remove python-colorama, python-cython, python-flake8,
  python-isort, python-joblib, python-pytest, python-pytest-randomly,
  python-pytest-xdist, python-setuptools, and python-wheel; add
  python-cython-3 and python-setuptools-next.

Change-Id: I59164ed861224bfb8230686b2133639a7d1c649e
 2025-08-07 18:33:38 +01:00
Nicolas Graves
3a3573fae8 gnu: python-rchitect: Update to 0.4.8. 
* gnu/packages/statistics.scm (python-rchitect): Update to 0.4.8.

Change-Id: If96584dc8ebec144ddb2ea9c0743b5ec36105abf
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-08-07 18:33:36 +01:00
Nicolas Graves
0dba518cb1 gnu: python-radian: Update to 0.6.15. 
* gnu/packages/statistics.scm (python-radian): Update to 0.6.15.

Change-Id: Ic0b3227884ff7fef0b9b9a3b166da14ddc90dcb3
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-08-07 18:33:36 +01:00
Sharlatan Hellseher
120edb6b36 gnu: Add python-nautilus-sampler. 
* gnu/packages/statistics.scm (python-nautilus-sampler): New variable.

Change-Id: Ic2881d9d26b02d7dd8ea03523a6a20195dd94727
 2025-07-31 22:13:40 +01:00
Andreas Enge
a442d2b86e gnu: readstat: Update to 1.1.9-0.718d491. 
* gnu/packages/statistics.scm (readstat): Update to 1.1.9-0.718d491.

Change-Id: I626bf888710c9092ae5b9c06e25fc696bc853d9f
 2025-07-30 18:29:37 +02:00
Janneke Nieuwenhuizen
82cc581995 gnu: r: Fix build with gcc-14. 
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Add CFLAGS to #:make-flags
to relax gcc-14's strictness.

Change-Id: I2b96d4da099572d2c356b99ccbc0e5b86f8ef136
 2025-07-18 20:17:22 +02:00
Nicolas Graves
6d00415da5 gnu: readstat: Replace gettext native-input. 
gnu-gettext has an emacs-minimal dependency, and we'd better avoid
this dependency.

* gnu/packages/gnome.scm (readstat)[native-inputs]: Replace
gnu-gettext by gettext-minimal.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2025-07-11 08:24:42 +02:00
Spencer King
04ba912d3b gnu: python-statsmodels: Update to 0.14.2. 
* gnu/packages/statistics.scm (python-statsmodels): Update to 0.14.2.

Change-Id: I548e3d702321c015dadc2980a9d43883fa2f2ec6
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-07-07 22:58:15 +02:00
Sharlatan Hellseher
d3711c6c2e gnu: Add python-dynesty. 
* gnu/packages/statistics.scm (python-dynesty): New variable.

Change-Id: I8ddbc66c82136fc6c0470cc3cd313f3832cd24d6
 2025-06-30 07:58:33 +01:00
Nicolas Graves
142a3d5177 gnu: libxls: Update to 1.6.3. 
* gnu/packages/statistics.scm (libxls): Update to 1.6.3.

Signed-off-by: Zheng Junjie <z572@z572.online>
 2025-06-23 12:32:52 +08:00
Nicolas Graves
01ad0cf43e gnu: ruby: Populating (gnu packages ruby-check/ruby-xyz). 
* gnu/packages/ruby.scm: Move all packages except different versions
of ruby and mruby, to either (gnu packages ruby-check) or
(gnu packages ruby-xyz).

* gnu/packages/ruby-check.scm (bundler, ruby-builder, ruby-cucumber-ci-environment,
ruby-cucumber-compatibility-kit,
ruby-cucumber-compatibility-kit-bootstrap, ruby-cucumber-core,
ruby-cucumber-expressions, ruby-cucumber-gherkin,
ruby-cucumber-html-formatter, ruby-cucumber-messages,
ruby-cucumber-tag-expressions, ruby-cucumber-wire, ruby-diff-lcs,
ruby-docile, ruby-fivemat, ruby-given-core, ruby-hoe, ruby-hoe-3,
ruby-json, ruby-mime-types, ruby-mime-types-data, ruby-mini-portile,
ruby-mini-portile-2, ruby-minitest, ruby-minitest-bonus-assertions,
ruby-minitest-focus, ruby-minitest-hooks, ruby-minitest-moar,
ruby-multi-test, ruby-rake, ruby-rake-compiler,
ruby-rake-compiler-dock, ruby-rspec, ruby-rspec-2, ruby-rspec-core,
ruby-rspec-core-2, ruby-rspec-expectations, ruby-rspec-expectations-2,
ruby-rspec-mocks, ruby-rspec-mocks-2, ruby-rspec-support, ruby-sequel,
ruby-simplecov-json-formatter, ruby-simplecov, ruby-simplecov-html,
ruby-sorcerer, ruby-unindent): Moved from (gnu packages ruby).
 (ruby-asciidoctor/minimal): New variable, to allow more minimal
 import of only (gnu packages ruby-check) in a lot of modules.
 (ruby-rubocop/minimal): New variable to build cucumber with a lot
 less dependencies.
 (cucumber-ruby-core)[native-inputs]: Replace ruby-rubocop by
 ruby-rubocop/minimal. Remove ruby-coveralls.

* gnu/packages/ruby-xyz.scm: Move all other packages from
(gnu packages ruby).

* gnu/packages/admin.scm
* gnu/packages/bioinformatics.scm
* gnu/packages/databases.scm
* gnu/packages/emacs-xyz.scm
* gnu/packages/gnome-xyz.scm
* gnu/packages/gnome.scm
* gnu/packages/groff.scm
* gnu/packages/kde-systemtools.scm
* gnu/packages/libffi.scm
* gnu/packages/mail.scm
* gnu/packages/maths.scm
* gnu/packages/mpd.scm
* gnu/packages/ntp.scm
* gnu/packages/package-management.scm
* gnu/packages/plotutils.scm
* gnu/packages/protobuf.scm
* gnu/packages/rails.scm
* gnu/packages/ruby-check.scm
* gnu/packages/ruby-xyz.scm
* gnu/packages/ruby.scm
* gnu/packages/shellutils.scm
* gnu/packages/statistics.scm
* gnu/packages/tex.scm
* gnu/packages/virtualization.scm:
    Adapt module imports accordingly.

* gnu/packages/backup.scm (btrbk):
* gnu/packages/ccache.scm (ccache):
* gnu/packages/cluster.scm (drbd-utils):
* gnu/packages/compton.scm (picom):
* gnu/packages/cryptsetup.scm (cryptsetup):
* gnu/packages/engineering.scm (kicad-doc):
* gnu/packages/games.scm (warzone2100):
* gnu/packages/irc.scm (open-adventure):
* gnu/packages/ntp.scm (weechat):
* gnu/packages/password-utils.scm (keepassxc):
* gnu/packages/radio.scm (wsjtx, jtdx):
* gnu/packages/syndication.scm (newsboat):
* gnu/packages/task-management.scm (timewarrior):
* gnu/packages/version-control.scm (git-lfs):
    [native-inputs]: Replace ruby-asciidoctor by
    ruby-asciidoctor/minimal. Adapt module imports accordingly.

* gnu/packages/text-editors.scm: Remove (gnu packages ruby) import.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-06-20 20:40:02 +02:00