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e0c0535193f53611be8a14acbdbd60fdec8af01f
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171578 Commits

Author SHA1 Message Date
Ricardo Wurmus
e0c0535193 gnu: r-gmisc: Update to 3.2.0. 
* gnu/packages/cran.scm (r-gmisc): Update to 3.2.0.
[native-inputs]: Remove r-boot and r-rms; add r-bench and r-vdiffr.

Change-Id: I113c5a2c5dd203b1239940f8b3a9373d17e742a6
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
58a4acd3f9 gnu: r-ddrtree: Update to 0.1.6. 
* gnu/packages/cran.scm (r-ddrtree): Update to 0.1.6.

Change-Id: I3627152d3ed65e78d08e2e8147779ff3c1247c23
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
9c350828bc gnu: r-rgl: Update to 1.3.36. 
* gnu/packages/cran.scm (r-rgl): Update to 1.3.36.

Change-Id: I49d1cbd90ed4104485432f5f4b004737749d92b4
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
e108a38b92 gnu: r-rcppparallel: Update to 5.1.11-2. 
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.1.11-2.

Change-Id: I7dc07cf9335d66d05a6848819a7413bbcd68a6ef
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
96de7aa64c gnu: r-lmertest: Update to 3.2-1. 
* gnu/packages/cran.scm (r-lmertest): Update to 3.2-1.

Change-Id: I05dcfe993121b3dcbf162e1c5de4840a8b2ca60a
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
903df015fa gnu: r-libcoin: Update to 1.0-11. 
* gnu/packages/cran.scm (r-libcoin): Update to 1.0-11.

Change-Id: Ife13b483454bd766b2c7139795b51599ed9da46b
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
c1c3f65d9d gnu: r-emmeans: Update to 2.0.2. 
* gnu/packages/cran.scm (r-emmeans): Update to 2.0.2.

Change-Id: I15ccc9678d5f000c9779e3f693a0a607a666fbfa
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
6b494bdb63 gnu: r-nleqslv: Update to 3.3.6. 
* gnu/packages/cran.scm (r-nleqslv): Update to 3.3.6.

Change-Id: I7534f409a5c02a3218f3054bb235fd3b95e8e195
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
73f9482ffd gnu: r-flashclust: Update to 1.1-4. 
* gnu/packages/cran.scm (r-flashclust): Update to 1.1-4.

Change-Id: If8b3c69cdd80e85cb2ebab8b2671902f0be6ae58
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
8866836a0a gnu: r-renv: Update to 1.1.8. 
* gnu/packages/cran.scm (r-renv): Update to 1.1.8.

Change-Id: Iff24ede74a488cf72ea3ff12bcc97049a0736680
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
be062b52ac gnu: r-later: Update to 1.4.8. 
* gnu/packages/cran.scm (r-later): Update to 1.4.8.

Change-Id: Iace0e377c69a3034dc16b82f8c0223e17fb35acd
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
e828c8aea0 gnu: r-n2r: Update to 1.0.4. 
* gnu/packages/cran.scm (r-n2r): Update to 1.0.4.

Change-Id: Ia9e8a450d30a2f539e24d11035b1f7fe2816e138
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
1cfdc1e93c gnu: r-rmysql: Update to 0.11.2. 
* gnu/packages/cran.scm (r-rmysql): Update to 0.11.2.

Change-Id: Ib309b60c336ccddad4beff5de1af6ff011fa372c
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
b5d01a88b2 gnu: r-partykit: Update to 1.2-26. 
* gnu/packages/cran.scm (r-partykit): Update to 1.2-26.

Change-Id: Ica2b504c1b07c94e60a722614472c2ab191efec5
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
c221450171 gnu: r-mirt: Update to 1.46.1. 
* gnu/packages/cran.scm (r-mirt): Update to 1.46.1.
[propagated-inputs]: Add r-splines2.

Change-Id: I82430ecb16b5422b83b0967929d2ae28047bc7b7
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
faa50bbe5a gnu: r-shinymeta: Update to 0.2.2. 
* gnu/packages/cran.scm (r-shinymeta): Update to 0.2.2.

Change-Id: I68a425f8fc73f87a2edd577769b43882ee8205ee
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
684812a4a6 gnu: r-httpgd: Update to 2.1.4. 
* gnu/packages/cran.scm (r-httpgd): Update to 2.1.4.

Change-Id: Ie3c6a7a44dee59e7453f30a976279ac5a04de519
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
e866f04012 gnu: r-highr: Update to 0.12. 
* gnu/packages/cran.scm (r-highr): Update to 0.12.

Change-Id: Ifa81b636ed88b342b0db65cf64b5483c4150cc02
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
607037fd8f gnu: r-tglkmeans: Update to 0.6.1. 
* gnu/packages/cran.scm (r-tglkmeans): Update to 0.6.1.
[propagated-inputs]: Remove r-ggplot2 and r-plyr.

Change-Id: I150d5ea1a89cf64bcaadac0f65a19869ea665827
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
7785ea071f gnu: r-vegan: Update to 2.7-3. 
* gnu/packages/cran.scm (r-vegan): Update to 2.7-3.

Change-Id: Ife9607438db6d1cb4e9cb9de5671d257d49365b2
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
9961c9b818 gnu: r-mirai: Update to 2.6.1. 
* gnu/packages/cran.scm (r-mirai): Update to 2.6.1.

Change-Id: I7db0ee77e98d3a897845341e774597e99073d5e6
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
e97ececffe gnu: r-lme4: Update to 2.0-1. 
* gnu/packages/cran.scm (r-lme4): Update to 2.0-1.

Change-Id: I51b587b69202c3ab48e0b4b6f0ff8d31dfbfb184
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
1f75198256 gnu: r-ggstats: Update to 0.13.0. 
* gnu/packages/cran.scm (r-ggstats): Update to 0.13.0.

Change-Id: I67d6a0c35e596f2ca291f973524a42a61bfa8d3c
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
47a038d430 gnu: r-cubist: Update to 0.6.0. 
* gnu/packages/cran.scm (r-cubist): Update to 0.6.0.
[native-inputs]: Add r-dplyr, r-mlbench, and r-withr.

Change-Id: I3156f66a389c0aacd57506c3a1663256e604cb50
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
547d7b386a gnu: r-bayesfactor: Update to 0.9.12-4.8. 
* gnu/packages/cran.scm (r-bayesfactor): Update to 0.9.12-4.8.

Change-Id: Ia125c84226b5bf04b65b37085857e2c219fac1dc
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
e36dc2ae2a gnu: r-microbiomestat: Update to 1.4. 
* gnu/packages/bioconductor.scm (r-microbiomestat): Update to 1.4.
[propagated-inputs]: Remove r-bbmisc, r-lhs, r-mlr, r-mlrmbo, r-paramhelpers, and
r-smoof; add r-bbotk, r-mlr3, r-mlr3mbo, and r-paradox.

Change-Id: Idc8342d33e47af8a4f9b0d104bce410dfca9417d
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
de1af38bce gnu: r-codedepends: Update to 0.6.7. 
* gnu/packages/bioconductor.scm (r-codedepends): Update to 0.6.7.

Change-Id: I9d35a67f25515137d58bc45f7dc8468f99f56395
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
f41346ad63 gnu: r-xllim: Update to 2.3.1. 
* gnu/packages/bioconductor.scm (r-xllim): Update to 2.3.1.

Change-Id: I0881a5df658b4ea7c6e76c5f17ca6f0c98da1753
 2026-04-02 07:36:59 +02:00
Ricardo Wurmus
03f528ab40 gnu: r-rcppgsl: Update to 0.3.14. 
* gnu/packages/cran.scm (r-rcppgsl): Update to 0.3.14.
[propagated-inputs]: Move gsl from here...
[inputs]: ...to here.

Change-Id: Ibac2ab81b38205364fc7f810024ac45968fc3de0
 2026-04-02 07:36:59 +02:00
Ricardo Wurmus
3efea96506 gnu: r-fs: Update to 1.6.7. 
* gnu/packages/cran.scm (r-fs): Update to 1.6.7.
[native-inputs]: Add pkg-config.

Change-Id: I34d6a0609723c0aef709844f46b637caae9eee4d
 2026-04-02 07:36:59 +02:00
Ricardo Wurmus
a47c21b162 gnu: r-factoextra: Update to 2.0.0. 
* gnu/packages/cran.scm (r-factoextra): Update to 2.0.0.
[propagated-inputs]: Remove r-abind, r-reshape2, and r-tidyr; add r-rlang.
[native-inputs]: Add r-testthat.

Change-Id: If3b8016e74fc6002837b0020576f51e67cd517cb
 2026-04-02 07:36:59 +02:00
Ricardo Wurmus
e463d523cb gnu: r-cvxr: Update to 1.8.1. 
* gnu/packages/cran.scm (r-cvxr): Update to 1.8.1.
[arguments]: Enable all tests.
[propagated-inputs]: Remove r-bit64, r-ecosolver, and r-rmpfr; add r-clarabel,
r-highs, r-s7, and r-slam.

Change-Id: Ibd5ef85da179a1f0a4c77f4b285e29bcc8794cea
 2026-04-02 07:36:59 +02:00
Nguyễn Gia Phong
c655fe2dd5 gnu: neomutt: Update to 20260105. 
* gnu/packages/mail.scm (neomutt): Update to 20260105.
  [native-inputs]:
    Update neomutt-test-files to commit c769cdefd45b.
    Add autosetup and remove its transitive dependency tcl.
  [source]: Add snippet and its required modules to unbundle autosetup.
  [arguments]
    <phases>:
      {configure}: Invoke autosetup directly.
      {prepare-test-files}: Re-enable test_mutt_sig_exit_handler.
    <configure-flags>:
      Move --prefix to the definition of the configure phase.
      Remove --ssl=1 which now conflicts with --gnutls.
      Add --enable-autocrypt.
  [inputs]: Add sqlite for autocrypt support.

Change-Id: I604876d66623bdc7d799d86962f60e437003f57f
Merges: https://codeberg.org/guix/guix/pulls/4835
Reviewed-by: Simon Tournier <zimon.toutoune@gmail.com>
 2026-04-02 14:26:42 +09:00
Nguyễn Gia Phong
1601f1cf95 gnu: neomutt: Improve style. 
* gnu/packages/mail.scm (neomutt)[arguments]: Update to modern style.

Change-Id: Ic2a5e2dab7c2d87b0bd54e6988d8193d0788db2d
Reviewed-by: Simon Tournier <zimon.toutoune@gmail.com>
 2026-04-02 14:26:37 +09:00
Nguyễn Gia Phong
7d28d73461 gnu: Add autosetup. 
* gnu/packages/build-tools.scm (autosetup): New variable.

Change-Id: Id285a64fa4128c79ed3247f64d17a9d58cf3211a
Reviewed-by: Simon Tournier <zimon.toutoune@gmail.com>
Reviewed-by: Maxim Cournoyer <maxim@guixotic.coop>
 2026-04-02 14:25:50 +09:00
Patrick Norton
a3376912b5 gnu: praat: Update to 6.4.62. 
* gnu/packages/language.scm (praat): Update to 6.4.62.

Change-Id: I3a0f53f2f670d7825ab55f499a2735ba5f4c95b1
Merges: https://codeberg.org/guix/guix/pulls/7610
Signed-off-by: Nguyễn Gia Phong <cnx@loang.net>
 2026-04-02 14:12:58 +09:00
Patrick Norton
9c6d55e584 gnu: udiskie: Update to 2.6.2. 
* gnu/packages/freedesktop.scm (udiskie): Update to 2.6.2.

Change-Id: I13b2eae5bfb4f39ce0a4e1fd728677ddc4240ae3
Merges: https://codeberg.org/guix/guix/pulls/7608
Signed-off-by: Nguyễn Gia Phong <cnx@loang.net>
 2026-04-02 14:07:25 +09:00
Evgeny Pisemsky
f7c9456a6f services: cat-avatar-generator: Fix default cache directory. 
* gnu/services/web.scm (cat-avatar-generator-service):
  Append slash to default cache directory.
* doc/guix.texi (PHP-FPM)<cat-avatar-generator-service>:
  Likewise.  Mention requirements.

Change-Id: Idd46deca135bf37133b46bee3ba535d9bedf9258
Merges: https://codeberg.org/guix/guix/pulls/5189
Reviewed-by: Yan Abu Arab <yanabuarab@gmail.com>
Signed-off-by: Nguyễn Gia Phong <cnx@loang.net>
 2026-04-02 13:24:51 +09:00
bdunahu
7c8cb33b98 gnu: nheko: Apply patch to render message replies properly. 
* gnu/packages/patches/nheko-0-12-1-fix-rendering-replies.patch:
  New file.
* gnu/packages/messaging.scm (nheko)[source]: Apply it.
* gnu/local.mk: (dist_patch_DATA): Register it.

Change-Id: I262b8054e9ef6365450c8f89a69d60e4200f996f
Merges: https://codeberg.org/guix/guix/pulls/6853
Signed-off-by: Nguyễn Gia Phong <cnx@loang.net>
 2026-04-02 13:09:56 +09:00
Nguyễn Gia Phong
bd0bba7440 gnu: Add djot. 
* gnu/packages/lua.scm (djot): New variable.

Change-Id: I8bf67cda21d213edac3c395f97b52e4026bc9c53
Merges: https://codeberg.org/guix/guix/pulls/6999
Reviewed-by: Carlo Zancanaro <carlo@zancanaro.id.au>
 2026-04-02 11:36:08 +09:00
Nguyễn Gia Phong
3d3e8d7d67 gnu: Add lua-djot. 
* gnu/packages/lua.scm (lua5.4-djot, lua-djot)
  (lua5.2-djot, lua5.1-djot): New variables.

Change-Id: I152a723dcece7218def021fbaefa50a662a811e0
Reviewed-by: Carlo Zancanaro <carlo@zancanaro.id.au>
 2026-04-02 11:35:51 +09:00
Yelninei
f52e17b736 gnu: dmd: Build additional man pages. 
* gnu/packages/dlang.scm (dmd-bootstrap)[#:make-flags]: Add DIFFABLE=1.
  [#:phases]: Add 'build-man phase.
  Adjust path for manpages in 'install.

Change-Id: I75363092c5953c81bf608a727e9daf4bafe6b5ec
Merges: https://codeberg.org/guix/guix/pulls/7440
Modified-by: Nguyễn Gia Phong <cnx@loang.net>
Signed-off-by: Nguyễn Gia Phong <cnx@loang.net>
 2026-04-02 11:30:11 +09:00
Sughosha
8ab3d223cb gnu: Add kalarm. 
* gnu/packages/kde-pim.scm (kalarm): New variable.

Change-Id: I35674f77d8d9b2258eae5a7d079b0e6fed26550b
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #7367
 2026-04-01 22:26:08 +02:00
Ludovic Courtès
0004ddeb8c gnu: guile-git: Update to 0.11.0. 
* gnu/packages/guile.scm (guile-git): Update to 0.11.0.

Change-Id: I63aba8930db27362cc9ef71bd0ad4a46319b8808
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #7438
 2026-04-01 22:06:14 +02:00
Herman Rimm
1debc5ea30 gnu: vim: Enable cross-compilation. 
* gnu/packages/vim.scm (vim)[arguments]: Set STRIP configure flag.

Change-Id: I15c5c233053496bc4c75d4d33d6e169381f83822
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #7267
 2026-04-01 22:06:13 +02:00
Herman Rimm
04a3266a3d gnu: vim-full: Refactor arguments. 
* gnu/packages/vim.scm (vim-full)[arguments]: Adjust comments, refactor
start-xserver phase.
[description]: Adjust comment.

Change-Id: Ic0cc29c65f89b5d0f06f023b47a1eeec4682b0b7
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2026-04-01 22:06:13 +02:00
Herman Rimm
40e32085e4 gnu: xxd: Refactor arguments. 
* gnu/packages/vim.scm (xxd)[arguments]: Use output G-expression.

Change-Id: Ic0cc29c65f89b5d0f06f023b47a1eeec4682b0b7
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2026-04-01 22:06:13 +02:00
Herman Rimm
ea6acecd11 gnu: vim: Refactor arguments. 
* gnu/packages/vim.scm (vim)[arguments]: Use with-directory-excursion,
this-package-input for patch-absolute-paths phase.  Merge skip-or-fix-
failing-tests phase with set-environment-variables, use this-package-
native-input.  Use output G-exp. and this-package-native-input for
install-guix.vim phase.
[native-inputs]: Put guix.vim into store.
[description]: Adjust comment.

Change-Id: Ic0cc29c65f89b5d0f06f023b47a1eeec4682b0b7
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2026-04-01 22:06:13 +02:00
Herman Rimm
f67676bd3b gnu: vim: Convert arguments value to G-expression. 
* gnu/packages/vim.scm (vim)[source]: Reduce indentation.
[arguments]: Convert to G-expression.  Use quoted list.
(xxd)[description]: Add newline.
(vim-full)[arguments]: Convert to G-expression.  Use this-package-input.
[description]: Add newline.

Change-Id: Iab3a9a6942c5b524d1008b25778a8898717ed4e4
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2026-04-01 22:06:13 +02:00
Herman Rimm
50a02cc74f gnu: vim-full: Refactor inputs. 
* gnu/packages/vim.scm (vim-full)[inputs]: Change to new style.  Use
modify-inputs.  Use inherited field value.

Change-Id: Idfec512798a9d3096c83b05f13aaef3660d317fd
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2026-04-01 22:06:13 +02:00