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103635 Commits

Author SHA1 Message Date
Nicolas Goaziou
e401eff977 gnu: python-nbconvert: Remove texlive-updmap.cfg as propagated input. 
`texlive-updmap.cfg' builds "updmap.cfg" file for texlive packages in native
inputs, because those do not benefit from the profile hook doing the very same
thing.  Consequently, `texlive-updmap.cfg' should not appear in propagated
inputs.

Moreover, XeTeX do not rely on "updmap.cfg" to find fonts; this is a second
reason to remove it from propagated inputs in this particular package.

* gnu/packages/python-xyz.scm (python-nbconvert)[propagated-inputs]: Remove
TEXLIVE-UPDMAP.CFG call.  Add TEXLIVE-COLLECTION-BASIC.  Remove TEXLIVE-IFTEX,
which is already included in TEXLIVE-COLLECTION-BASIC.  Sort inputs
alphabetically.
 2023-07-19 21:10:56 +02:00
Nicolas Goaziou
ebb54e6a5f gnu: python-nbconvert: Fix build. 
This fixes <https://issues.guix.gnu.org/64729>.

* gnu/packages/python-xyz.scm (python-nbconvert)[propagated-inputs]: Add
TEXLIVE-ENVIRON, TEXLIVE-PDFCOL, TEXLIVE-PGF, and TEXLIVE-XETEX.
 2023-07-19 20:28:07 +02:00
Nicolas Goaziou
29ff5d984d gnu: Add texlive-pdfcol. 
* gnu/packages/tex.scm (texlive-pdfcol): New variable.
 2023-07-19 20:27:58 +02:00
Tobias Geerinckx-Rice
7abf96a2ec gnu: frama-c: Build verbosely. 
As verbosely as most other packages, that is.

* gnu/packages/maths.scm (frama-c)[arguments]: Add "--enable-verbosemake"
to #:configure-flags.
 2023-07-16 02:00:08 +02:00
Tobias Geerinckx-Rice
fcf54c717f gnu: python-sshtunnel: Fix build. 
* gnu/packages/python-xyz.scm (python-sshtunnel)[native-inputs]:
Add python-mock.
 2023-07-16 02:00:08 +02:00
Tobias Geerinckx-Rice
b2066b2ac2 gnu: libbsd: Update to 0.11.7. 
* gnu/packages/libbsd.scm (libbsd): Update to 0.11.7.
 2023-07-16 02:00:08 +02:00
Tobias Geerinckx-Rice
32e022d574 gnu: xfstests: Update to 1.1.0-2.87f90a2. 
This fixes the build.

* gnu/packages/file-systems.scm (xfstests):
Update to 1.1.0-2.87f90a2.
 2023-07-16 02:00:08 +02:00
Tobias Geerinckx-Rice
cfbaef68eb gnu: libinih: Update to 57. 
* gnu/packages/linux.scm (libinih): Update to 57.
 2023-07-16 02:00:08 +02:00
Tobias Geerinckx-Rice
236edb05d7 gnu: nvme-cli: Separate :doc files. 
* gnu/packages/linux.scm (nvme-cli)[outputs]: Add "doc".
[arguments]: Install HTML documentation there.
 2023-07-16 02:00:08 +02:00
Tobias Geerinckx-Rice
0dafac1cfb gnu: nvme-cli: Update to 2.5. 
* gnu/packages/linux.scm (nvme-cli): Update to 2.5.
 2023-07-16 02:00:08 +02:00
Tobias Geerinckx-Rice
07f436ce13 gnu: libnvme: Separate :doc files. 
Also fix the .rst files being dumped in the root of the output.

* gnu/packages/linux.scm (libnvme)[outputs]: Add "doc".
[arguments]: Install HTML and RST documentation there.
 2023-07-16 02:00:08 +02:00
Tobias Geerinckx-Rice
2ca16e4318 gnu: libnvme: Update to 1.5. 
* gnu/packages/linux.scm (libnvme): Update to 1.5.
 2023-07-16 02:00:08 +02:00
Tobias Geerinckx-Rice
9e983c611e gnu: lesspipe: Update to 2.08. 
* gnu/packages/less.scm (lesspipe): Update to 2.08.
 2023-07-16 02:00:07 +02:00
Tobias Geerinckx-Rice
9991028fef gnu: libtraceevent: Shorten source snippet. 
* gnu/packages/linux.scm (libtraceevent)[source]:
Use SUBSTITUTE*'s features.
 2023-07-16 02:00:07 +02:00
Tobias Geerinckx-Rice
1063a3b564 gnu: libtraceevent: Update to 1.7.3. 
* gnu/packages/linux.scm (libtraceevent): Update to 1.7.3.
 2023-07-16 02:00:07 +02:00
Tobias Geerinckx-Rice
4feaefbb27 gnu: gnome-multi-writer: Fix build. 
* gnu/packages/gnome.scm (gnome-multi-writer)[native-inputs]: Add gettext-minimal.
 2023-07-16 02:00:07 +02:00
Tobias Geerinckx-Rice
33166500d2 gnu: gnome-multi-writer: Remove input labels. 
* gnu/packages/gnome.scm (gnome-multi-writer)[native-inputs]:
Remove input labels.
 2023-07-16 02:00:07 +02:00
Tobias Geerinckx-Rice
3a63ed24f2 gnu: rspamd: Update to 3.5. 
* gnu/packages/mail.scm (rspamd): Update to 3.5.
 2023-07-16 02:00:07 +02:00
Tobias Geerinckx-Rice
f86cd0280e gnu: ytnef: Update to 2.1.2. 
* gnu/packages/mail.scm (ytnef): Update to 2.1.2.
 2023-07-16 02:00:07 +02:00
Tobias Geerinckx-Rice
e0c434ee72 gnu: tpacpi-bat: Fix cross-compilation. 
* gnu/packages/linux.scm (tpacpi-bat)[arguments]: Use SEARCH-INPUT-FILE.
[inputs]: Add coreutils-minimal.
 2023-07-16 02:00:07 +02:00
Tobias Geerinckx-Rice
4267580a53 gnu: tpacpi-bat: Update to 3.2. 
* gnu/packages/linux.scm (tpacpi-bat): Update to 3.2.
[arguments]: Don't explicitly return #t from phases.
linux tpacpi-bat
 2023-07-16 02:00:07 +02:00
Ricardo Wurmus
5566f691a2 gnu: Add r-qfeatures. 
* gnu/packages/bioconductor.scm (r-qfeatures): New variable.
 2023-07-19 15:29:23 +02:00
Ricardo Wurmus
16a05db0ac gnu: Add r-spectra. 
* gnu/packages/bioconductor.scm (r-spectra): New variable.
 2023-07-19 15:29:23 +02:00
Ricardo Wurmus
3fa6c2b1cb gnu: Add r-rtcgatoolbox. 
* gnu/packages/bioconductor.scm (r-rtcgatoolbox): New variable.
 2023-07-19 15:29:23 +02:00
Ricardo Wurmus
571ad39628 gnu: Add r-gwastools. 
* gnu/packages/bioconductor.scm (r-gwastools): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus
5be6946e19 gnu: Add r-beadarray. 
* gnu/packages/bioconductor.scm (r-beadarray): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus
a4dc8edced gnu: Add r-beaddatapackr. 
* gnu/packages/bioconductor.scm (r-beaddatapackr): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus
9cf4d48850 gnu: Add r-ucell. 
* gnu/packages/bioconductor.scm (r-ucell): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus
91b1367e90 gnu: Add r-tcgautils. 
* gnu/packages/bioconductor.scm (r-tcgautils): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus
3132fcf7f8 gnu: Add r-globalancova. 
* gnu/packages/bioconductor.scm (r-globalancova): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus
72e6324b4a gnu: Add r-seqarray. 
* gnu/packages/bioconductor.scm (r-seqarray): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus
1f80d41735 gnu: Add r-nebulosa. 
* gnu/packages/bioconductor.scm (r-nebulosa): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus
15b35874b1 gnu: Add r-ggtreeextra. 
* gnu/packages/bioconductor.scm (r-ggtreeextra): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus
c63da4eb52 gnu: Add r-survcomp. 
* gnu/packages/bioconductor.scm (r-survcomp): New variable.
 2023-07-19 15:29:22 +02:00
Ricardo Wurmus
2edbfd43aa gnu: r-missmethyl: Move out of experiments section. 
* gnu/packages/bioconductor.scm (r-missmethyl): Move from experiments section
to packages section.
 2023-07-19 15:29:14 +02:00
Ricardo Wurmus
e74e9f6240 gnu: r-cellid: Move out of experiments section. 
* gnu/packages/bioconductor.scm (r-cellid): Move from experiments section to
packages section.
 2023-07-19 15:29:14 +02:00
Ricardo Wurmus
efec1a8453 gnu: Add r-mfuzz. 
* gnu/packages/bioconductor.scm (r-mfuzz): New variable.
 2023-07-19 15:29:14 +02:00
Ricardo Wurmus
5a20a14c3e gnu: Add r-raggedexperiment. 
* gnu/packages/bioconductor.scm (r-raggedexperiment): New variable.
 2023-07-19 15:29:14 +02:00
Ricardo Wurmus
9d45783d77 gnu: Add r-spatialexperiment. 
* gnu/packages/bioconductor.scm (r-spatialexperiment): New variable.
 2023-07-19 15:29:14 +02:00
Ricardo Wurmus
c5f9e435da gnu: Add r-singscore. 
* gnu/packages/bioconductor.scm (r-singscore): New variable.
 2023-07-19 15:29:14 +02:00
Ricardo Wurmus
f77216721e gnu: Add r-plyranges. 
* gnu/packages/bioconductor.scm (r-plyranges): New variable.
 2023-07-19 14:57:07 +02:00
Ricardo Wurmus
b7d3a9e2f5 gnu: Add r-tkwidgets. 
* gnu/packages/bioconductor.scm (r-tkwidgets): New variable.
 2023-07-19 14:56:11 +02:00
Ricardo Wurmus
dc889e85a9 gnu: Add r-dyndoc. 
* gnu/packages/bioconductor.scm (r-dyndoc): New variable.
 2023-07-19 14:55:11 +02:00
Ricardo Wurmus
d0c96a78ed gnu: Add r-genomicdatacommons. 
* gnu/packages/bioconductor.scm (r-genomicdatacommons): New variable.
 2023-07-19 14:54:02 +02:00
Ricardo Wurmus
46cae56dfe gnu: Add r-snprelate. 
* gnu/packages/bioconductor.scm (r-snprelate): New variable.
 2023-07-19 14:53:06 +02:00
Ricardo Wurmus
b4cfd40aae gnu: Add r-enhancedvolcano. 
* gnu/packages/bioconductor.scm (r-enhancedvolcano): New variable.
 2023-07-19 14:37:54 +02:00
Ricardo Wurmus
1b48d723bd gnu: Add r-logistf. 
* gnu/packages/cran.scm (r-logistf): New variable.
 2023-07-19 13:09:32 +02:00
Ricardo Wurmus
c31eea21dd gnu: Add r-formula-tools. 
* gnu/packages/cran.scm (r-formula-tools): New variable.
 2023-07-19 13:09:25 +02:00
Ricardo Wurmus
5f6daad3c8 gnu: Add r-operator-tools. 
* gnu/packages/cran.scm (r-operator-tools): New variable.
 2023-07-19 13:09:03 +02:00
Ricardo Wurmus
4415a421c4 gnu: Add r-uchardet. 
* gnu/packages/cran.scm (r-uchardet): New variable.
 2023-07-19 13:08:47 +02:00