* gnu/packages/simulation.scm (openfoam-com): Update to 2506.
[source]: Switch to git-fetch. Remove snippets.
[arguments]: Add parent variable to replace version for inherited package.
Change-Id: I2c79e98e621516dfe0e950a41b9abb515da43af3
Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu/packages/simulation.scm (openfoam-org): Update to 13.
[source]: Switch to git-fetch. Move snippets to phases.
[native-inputs, inputs]: Move runtime dependencies from native-inputs
to inputs. Add dependencies for paraview to build plugin. Switch to Qt6.
[arguments]: Reorder phases, use configure phase for configuration.
Add version suffix to OpenFOAM install folder.
Add phase to patch version. Add phase to patch paraview.
Wrap the binaries with the environment variables sourced from bashrc.
Change-Id: I26a313fa3aab22bff5a743890c6ffb0d56857f0b
Signed-off-by: Andreas Enge <andreas@enge.fr>
This reverts commit a7db92d9b3, this time with
the more careful command, to avoid a world rebuild:
grep -rl --exclude-dir=build --exclude-dir=patches --exclude=ld-wrapper.in \
--exclude=sitecustomize.py --exclude=guix-emacs.el maxim.cournoyer@gmail.com |
xargs sed -i 's/maxim.cournoyer@gmail.com/maxim@guixotic.coop/g'
Change-Id: I0871f5cf9ace79e34e78e24154d0da6ea95a3a91
The change was automated via:
git grep -l maxim.cournoyer@gmail.com |
xargs sed -i 's/maxim.cournoyer@gmail.com/maxim@guixotic.coop/g'
* .mailmap: New entry.
Change-Id: Iaa88b1e51c94159c49138fb43910badb990eb169
* gnu/packages/image-processing.scm (paraview): Update to 6.0.0.
[source]<snippet>: Update list of bundled VTK libraries in comments. glew is
no longer bundled so do not remove it.
[arguments]<#:configure-flags>: Use a relative directory in
"CMAKE_INSTALL_DOCDIR" and
"PARAVIEW_GENERATED_DOCUMENTATION_OUTPUT_DIRECTORY". Remove
"-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON".
[inputs]: Replace fmt with fmt-11. Remove glew.
* gnu/packages/simulation.scm (openfoam-org)[native-inputs]: Replace fmt with
fmt-11. Remove glew.
Change-Id: Ifa005f33dd04c0119008726c11f3b32efba28b0d
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
The dolfin interface to sundials requires a header file 'cvode_impl.h'
which is not available in sundials v>5.4.0.
* gnu/packages/simulation.scm (fenics-dolfin)
[inputs]: Remove SUNDIALS-OPENMPI.
[arguments]<#:configure-flags>: Disable SUNDIALS feature.
<#:phases>: Do not set SUNDIALS_DIR variable.
Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu/packages/patches/fenics-dolfin-integer-types.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register new patch.
* gnu/packages/simulation.scm (fenics-dolfin)[source]: Use new patch.
Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu/packages/simulation.scm (python-dolfin-adjoint): Fix build.
[arguments]: Set pytest import mode. Update list of failing tests.
[native-inputs]: Add python-setuptools and python-wheel, needed by
pyproject-build-system.
Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu/packages/simulation.scm (fenics): Run guix style, improve
formatting.
[arguments] <phases>: Remove test module references to expired numpy
aliases in the 'pre-check' phase. Use '--deselect' instead of '--ignore'
to skip a test in the 'check' phase. Add a FIXME note to enable reading
and writing files in the binary HDF5 format.
Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu/packages/patches/fenics-dolfin-hdf5-version-check.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register new patch.
* gnu/packages/simulation.scm (fenics-dolfin): Run guix style.
[source]: Use new patch.
[arguments] <phases>: Update 'pre-check' comment.
Add 'demo_stokes-iterative_mpi' test to list of skipped tests.
Change-Id: I8ec4534d96af6726fcfd3a601d34b109d06c4ca6
Signed-off-by: Andreas Enge <andreas@enge.fr>
This package is quite dated and upstream no longer maintains it: "This
repository was archived by the owner on Feb 21, 2022. It is now
read-only." <https://bitbucket.org/fenics-project/fiat> ->
<https://github.com/FEniCS/fiat> while providing a new refactored
fork <https://github.com/firedrakeproject/fiat>.
* gnu/packages/simulation.scm (python-fenics-fiat)
[build-system]: Swap to pyproject-build-system.
[arguments] <test-flags>: Move tests skip logic here.
<phases>: Use default 'check.
[native-inputs]: Add python-setuptools and python-wheel.
[description]: Adjust fill column indentation.
Change-Id: Ifea4430b1e49491f1b145702ec6df58153a9c809
* gnu/packages/simulation.scm (python-fenics-dijitso):
[build-system]: Move to pyproject-build-system.
[arguments]<#:phases>: Rewrite check phase replacement to care about
.guix-pytest.
Change-Id: I3383f4078fbb0100e6d8257d7d84785b953ab0cf
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu/packages/simulation.scm (python-dolfin-adjoint) [arguments]:
<#:test-flags>: Explicitly ignore failing tests during collection phase
and some tests during runt test phase.
<#:phases>: Change HOME env to GETCWD in 'set-environment-variable phase.
Change-Id: Ibee5e45052a3828b4522752a87c97367d7caec65
* gnu/packages/simulation.scm (python-dolfin-adjoint): Move inputs after
arguments.
[description]: Place it on a new line, fix indentation.
Change-Id: I3d971e48b4072258ed0b41af5c202e64af9de8f3
So far the source was taken from an auto-generated, unstable tarball at
github.com. This fixes that.
* gnu/packages/simulation.scm (openfoam-org)[source]: Switch to
'git-fetch'.
[arguments]: Add 'rename-self' phase.
Give the python variant a different name, and fix the build.
* gnu/packages/simulation.scm (python-open-simulation-interface)[name]: Set.
[propagated-inputs]: Add python-pyyaml and python-protobuf.
