tribes/guix
1
0
Fork 1
mirror of https://git.savannah.gnu.org/git/guix.git synced 2026-08-15 09:41:32 +02:00
Code Activity
185,769 Commits 76 Branches 40 Tags
e6cea80a08130f941b135d978e52b8aefbb01a3c
Commit Graph

172658 Commits

Author SHA1 Message Date
Ricardo Wurmus e6cea80a08 gnu: r-zellkonverter: Enable tests by bypassing Conda. 
* gnu/packages/bioconductor.scm (r-zellkonverter)[arguments]: Enable all tests
but one; add phase 'basilisk-configuration.
[inputs]: Add python-anndata, python-h5py, python-natsort, python-numpy,
python-pandas, python-scipy, and python-wrapper.

Change-Id: I4eb5e34ab540bdeea64f6b8629bb8f17d24c3663
 2026-04-28 09:43:17 +02:00
Ricardo Wurmus b1241b9837 gnu: r-hdf5array: Update comment. 
* gnu/packages/bioconductor.scm (r-hdf5array)[arguments]: Update comment on
why we delete a test.

Change-Id: Ibefbe960a12969337a63329d511d6c0891895c94
 2026-04-28 09:43:17 +02:00
Ricardo Wurmus fa529d1008 gnu: r-basilisk: Patch to bypass Conda. 
* gnu/packages/bioconductor.scm (r-basilisk)[arguments]: Add phase
'patch-for-guix.

Change-Id: I8bcfd78da0818235a3ab1c00aae8dafdc8aa57aa
 2026-04-28 09:43:17 +02:00
Ricardo Wurmus 7a85759090 gnu: r-decoupler: Replace custom phase with SKIPPED-TESTS argument. 
* gnu/packages/bioconductor.scm (r-decoupler)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: I40e3ba1539ee4dc5d471c547a5208317f2a7600e
 2026-04-28 09:43:16 +02:00
Ricardo Wurmus 3cd0fafdd1 gnu: r-cner: Remove custom phases, enable all tests. 
* gnu/packages/bioconductor.scm (r-cner)[arguments]: Remove phases
'disable-bad-tests and 'fix-gcc-14-strictness.

Change-Id: I116538acce4dacad5550727dba14bb72bb8905f4
 2026-04-28 09:43:16 +02:00
Ricardo Wurmus b6e3f8e6b6 gnu: r-chromvar: Replace custom phase with SKIPPED-TESTS argument. 
* gnu/packages/bioconductor.scm (r-chromvar)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: Ia5419e9be986c9600372de103c0ee5353a194346
 2026-04-28 09:43:16 +02:00
Ricardo Wurmus a43943d964 gnu: r-mscoreutils: Enable all tests. 
* gnu/packages/bioconductor.scm (r-mscoreutils)[arguments]: Remove phase
'disable-bad-tests.

Change-Id: I6fa331a8110d3923f7f1394023cfa81aa2a1b837
 2026-04-28 09:43:16 +02:00
Ricardo Wurmus c11f5915ed gnu: r-abn: Enable all tests. 
* gnu/packages/bioconductor.scm (r-abn)[arguments]: Remove phase
'delete-bad-tests.

Change-Id: I78978dfc6e606c90d24c6ef6b4cf0ed5f1af3492
 2026-04-28 09:43:16 +02:00
Ricardo Wurmus 56f3be50c4 gnu: r-posterior: Update to 1.7.0. 
* gnu/packages/cran.scm (r-posterior): Update to 1.7.0.

Change-Id: I7053e29e54d42cbb82a45d19831accc849df796a
 2026-04-28 09:43:16 +02:00
Ricardo Wurmus 1bb57f474b gnu: r-processx: Update to 3.8.7. 
* gnu/packages/cran.scm (r-processx): Update to 3.8.7.

Change-Id: I69d8e6a7d8627f851b066b00e4e74340767facfb
 2026-04-28 09:43:16 +02:00
Ricardo Wurmus e5eae4c58a gnu: r-pkgload: Update to 1.5.1. 
* gnu/packages/cran.scm (r-pkgload): Update to 1.5.1.

Change-Id: Ib774f4e6a77be5d7358673485337248e47388700
 2026-04-28 09:43:16 +02:00
Ricardo Wurmus 27d8040bb8 gnu: r-ps: Update to 1.9.2. 
* gnu/packages/cran.scm (r-ps): Update to 1.9.2.

Change-Id: I44542f83ac5880a79f940ab6702805812d3414e1
 2026-04-28 09:43:16 +02:00
Ricardo Wurmus 0ac03eb38c gnu: r-conos: Update to 1.5.3. 
* gnu/packages/bioconductor.scm (r-conos): Update to 1.5.3.

Change-Id: I1f2b0773ab03051dd4c82f991196c0c7ac77063f
 2026-04-28 09:43:15 +02:00
Ricardo Wurmus 6601fd0402 gnu: r-barcodetrackr: Replace custom phase with SKIPPED-TESTS argument. 
* gnu/packages/bioconductor.scm (r-barcodetrackr)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: Ibe719fb6a2395c31c67788255d7df95988962b4c
 2026-04-28 09:43:15 +02:00
Ricardo Wurmus 363ad0fc8c gnu: r-basics: Replace custom phase with SKIPPED-TESTS argument. 
* gnu/packages/bioconductor.scm (r-basics)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: I2948991cebaab753c496ec272a9f82c5f359ca2d
 2026-04-28 09:43:15 +02:00
André Batista 02421ea3fb gnu: mullvadbrowser: Update to 15.0.10. 
Fixes CVEs: 2026-6746, 2026-6747, 2026-6748, 2026-6749, 2026-6750,
2026-6751, 2026-6752, 2026-6753, 2026-6754, 2026-6757, 2026-6759,
2026-6761, 2026-6762, 2026-6763, 2026-6764, 2026-6765, 2026-6766,
2026-6767, 2026-6769, 2026-6770, 2026-6771, 2026-6772, 2026-6776,
2026-6785 and 2026-6786.

See:
<https://www.mozilla.org/en-US/security/advisories/mfsa2026-32/> for
details.

* gnu/packages/tor-browsers.scm (%mullvadbrowser-build-date): Update to
20260420133000.
(%mullvadbrowser-version): Update to 15.0.10.
(%mullvadbrowser-firefox-version): Update to 140.10.0esr-15.0-1-build2.
(mullvadbrowser-translation-base): Update to b09d79a755.

Change-Id: I7ca71425b6135ca9649d52b577b3278e64250674
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2026-04-28 09:01:45 +02:00
André Batista 48f6b21f1c gnu: torbrowser: Update to 15.0.10. 
Fixes CVEs: 2026-6746, 2026-6747, 2026-6748, 2026-6749, 2026-6750,
2026-6751, 2026-6752, 2026-6753, 2026-6754, 2026-6757, 2026-6759,
2026-6761, 2026-6762, 2026-6763, 2026-6764, 2026-6765, 2026-6766,
2026-6767, 2026-6769, 2026-6770, 2026-6771, 2026-6772, 2026-6776,
2026-6785 and 2026-6786.

See:
<https://www.mozilla.org/en-US/security/advisories/mfsa2026-32/> for
details.

* gnu/packages/tor-browsers.scm (%torbrowser-build-date): Update to
20260420133000.
(%torbrowser-version): Update to 15.0.10.
(%torbrowser-firefox-version): Update to 140.10.0esr-15.0-1-build2.
(torbrowser-translation-base): Update to b09d79a755.
(torbrowser-translation-specific): Update to acc7524bf4.

Change-Id: If87a8147f55da7dba625d3cb976085a65b97ed09
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2026-04-28 09:01:38 +02:00
Cayetano Santos 8227c6e7b3 gnu: mu: Update to 1.14.1. 
* gnu/packages/mail.scm (mu): Update to 1.14.1.

Change-Id: I555df29c96b047ce2bbc0ac7903c220adbd69694
 2026-04-28 08:53:28 +02:00
Mattia Bunel abaf568edf services: postgresql: Change default authentification method. 
* gnu/services/databases.scm (%default-postgres-hba):
  Change the authentification method from the deprecated md5
  to the recommended scram-sha-256.

Change-Id: I4ae06bf2f77daa7a9339964182153c5f02897e4f
Merges: https://codeberg.org/guix/guix/pulls/7780
Reviewed-by: jgart <jgart@dismail.de>
Signed-off-by: Nguyễn Gia Phong <cnx@loang.net>
 2026-04-28 15:03:16 +09:00
Juliana Sims 75ea9c1857 gnu: xdg-desktop-portal-wlr: Cleanup and style. 
* gnu/packages/freedesktop.scm (xdg-desktop-portal-wlr): Cleanup and run guix
style.

Change-Id: I2ac138281b8be351000f0beabd2efb1d0cdcb29f
Signed-off-by: Noé Lopez <noelopez@free.fr>
 2026-04-27 22:53:53 +02:00
Juliana Sims c9652dcc06 gnu: xdg-desktop-portal-wlr: Use gexps. 
* gnu/packages/freedesktop.scm (xdg-desktop-portal-wlr): Use gexps.

Change-Id: I23356906c439dd2e4ba24e3ecf6244a7c5bf1942
Signed-off-by: Noé Lopez <noelopez@free.fr>
 2026-04-27 22:53:53 +02:00
Juliana Sims 4fd78658a7 gnu: xdg-desktop-portal-wlr: Fix screencast. 
Logic for handling output and window selection moved into a separate file
which needs to have its hardcoded paths correct.

* gnu/packages/freedesktop.scm (xdg-desktop-portal-wlr): Fix screencast.

Change-Id: Idad5bc7fa75b926cf48dfa6cb8dc95cf92e5bd5a
Signed-off-by: Noé Lopez <noelopez@free.fr>
 2026-04-27 22:53:50 +02:00
jgart da514e3e8f gnu: Remove ecl-mcclim. 
* gnu/packages/lisp-xyz.scm (ecl-mcclim): Delete variable.

Change-Id: I294e2cd132195a38719596f63e406251de203e80
 2026-04-27 15:45:47 -04:00
aecepoglu 9ae428f9ca gnu: sbcl-slime-swank: update to 2.32 
* gnu/packages/lisp-xyz.scm (sbcl-slime-swank): update to 2.32

Change-Id: Ie41a24f723dbe92a786f6cdd9695baba02eee9ff
Signed-off-by: jgart <jgart@dismail.de>
 2026-04-27 15:45:47 -04:00
Simen Endsjø 3ce60cd35e gnu: evdi: Update to 1.14.15. 
* gnu/packages/linux.scm (evdi): Update to 1.14.15.
[arguments]<#:phases>{embed-/etc/os-release}: New phase to remove
`include /etc/os-release' from Makefile.
[description]: Add a period.

Change-Id: Ica3290fdfbafe26e0f26604513a180b45d318275
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2026-04-27 15:27:04 +02:00
Simen Endsjø 80fcc26390 Revert "gnu: Remove libevdi." 
This reverts commit 8d6b041cb6.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2026-04-27 15:27:04 +02:00
Simen Endsjø 723dc0512c Revert "gnu: Remove evdi." 
This reverts commit 7619e82b35.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2026-04-27 15:27:04 +02:00
Cayetano Santos 66ca9d5331 gnu: verilator: Update to 5.048. 
* gnu/packages/electronics.scm (verilator): Update to 5.048.

Change-Id: I752a8d286fa0d6191450e4e40fe30780c8854774
 2026-04-27 14:44:13 +02:00
Cayetano Santos 7c93e85206 gnu: python-edalize: Update to 0.6.8. 
* gnu/packages/electronics.scm (python-edalize): Update to 0.6.8.

Change-Id: I753b5004a885386efcc8ede35ef948368a386311
 2026-04-27 14:42:57 +02:00
Cayetano Santos 19a2b2f026 gnu: nvc: Update to 1.20.1. 
* gnu/packages/electronics.scm (nvc): Update to 1.20.1.

Change-Id: Ia196440b823d38f371e3efe349b92226405c1cc3
 2026-04-27 14:20:18 +02:00
Andreas Enge e087bad5e9 gnu: Remove regrader. 
* gnu/packages/music.scm (regrader): Delete variable.

Fixes: guix/guix#7461
Change-Id: Id838f86be15353aff842afd54d793b21d146ff0e
 2026-04-27 14:03:58 +02:00
Andreas Enge 54f071fb05 gnu: Remove gandi-cli. 
* gnu/packages/networking.scm (gandi-cli): Delete variable.

Fixes: guix/guix#7428
Change-Id: I0d85449aabcc0b6a908ad4426e463fb611756918
 2026-04-27 14:02:06 +02:00
Andreas Enge 90cd859382 gnu: Remove gandi.cli. 
* gnu/packages/networking.scm (gandi.cli): Delete variable.

Change-Id: Iaffb057fe11a6c08178ddbac087c05119c519ffb
 2026-04-27 14:00:49 +02:00
Juliana Sims aa53694ba3 gnu: xdg-desktop-portal-wlr: Update to 0.8.2. 
* gnu/packages/freedesktop.scm (xdg-desktop-portal-wlr): Update to 0.8.2.

Change-Id: Ia8bcb863a7da723068db67244d2382d7418d482e
Signed-off-by: Noé Lopez <noelopez@free.fr>
 2026-04-27 12:15:25 +02:00
Andy Tai 95c94f8fd4 gnu: parallel: Update to 20260422. 
* gnu/packages/parallel.scm (parallel): Update to 20260422.

Change-Id: I41db3522559f1342b231cd6fa77a89ac377c83bd
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #8134
 2026-04-27 10:03:06 +02:00
Ludovic Courtès 48ab37e8ba gnu: munge: Build the shared library only. 
* gnu/packages/admin.scm (munge)[arguments]: Pass ‘--disable-static’.

Change-Id: I6383514166460262e4f964b635250ee0c4510119
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #8046
 2026-04-27 10:03:05 +02:00
Ludovic Courtès 7d3e684ee1 gnu: munge: Use gexps. 
* gnu/packages/admin.scm (munge)[arguments]: Rewrite to gexps.  Remove
unnecessary ‘--with-libgcrypt-prefix’ configure flag.

Change-Id: I25fb0b02105f2e22fba1ca04d495dca40e6314ee
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2026-04-27 10:03:05 +02:00
Ludovic Courtès 2568426ebf gnu: munge: Build from a Git checkout. 
* gnu/packages/admin.scm (munge)[source]: Switch to ‘git-fetch’ and adjust
‘snippet’ accordingly.
[native-inputs]: Add ‘autoconf’, ‘automake’, and ‘libtool’.
[arguments]: Add ‘pre-bootstrap’ phase.  Adjust ‘skip-failing-tests’ phase.

Change-Id: I807a7cff020757f785812f321a22ab03b0b04d5e
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2026-04-27 10:03:05 +02:00
Ludovic Courtès 52d151a253 gnu: munge: Update to 0.5.18. 
* gnu/packages/admin.scm (munge)[source]: Update to 0.5.18 and adjust
‘snippet’.
[native-inputs]: New field.
[arguments]: In ‘skip-failing-tests’ phase, modify ‘03-munged.sh’ and adjust
file names.

Change-Id: I2f02d5ed0f095674427c308d7efeb3ad4c4e62b4
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2026-04-27 10:03:05 +02:00
Ludovic Courtès 8d2742cb8f gnu: openpmix: Add dependency on munge. 
This is necessary on some systems; failing that, openpmix warns about missing
“munge” component.

* gnu/packages/parallel.scm (openpmix)[inputs]: Add ‘munge’.

Change-Id: I26b4b16887d153d2e43f38762eeddd25d10a3631
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2026-04-27 10:03:05 +02:00
Johannes Christ 2ca5575e9d linux-container: Add #:child-is-pid1? to ‘eval/container’. 
* gnu/system/linux-container.scm (eval/container): Add `#:child-is-pid1?`.

Change-Id: I522783f22a38093d862f5cfad1c68baaacd4ecc5
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2026-04-27 10:03:05 +02:00
Johannes Christ d1d079739b linux-container: Fix hang when #:child-is-pid1? is true. 
* gnu/build/linux-container.scm (call-with-container): Use `safe-clone`
  instead of `primitive-fork` as the latter suffers from a Guile
  regression causing the child to hang up.

Change-Id: I6da65991fdec6b4403ebdcde618a87ba39e802b3
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2026-04-27 10:03:04 +02:00
Ashish SHUKLA 393be2396e gnu: php-8.4: Update to 8.4.20 
* gnu/packages/php.scm (php-8.4): Update to 8.4.20.

Change-Id: I061e97e89a1b09d75a00580ae124008a6007e747
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #8070
 2026-04-27 10:03:04 +02:00
Ashish SHUKLA a400a5e34b gnu: php-8.5: Update to 8.5.5 
* gnu/packages/php.scm (php-8.5): Update to 8.5.5.

Change-Id: Iab0dcefcc60d03bc0fc08e4f0a3bebe3a30f95b6
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2026-04-27 10:03:04 +02:00
Ashish SHUKLA 03f78cb1e8 gnu: php-8.5: Generate X.509 certificates used for tests. 
The X.509 certificates shipped with the tarball and used for the tests expire
at some point (some of them in April 2026), leading to test failures.  By
generating them we avoid this problem entirely.

* gnu/packages/php.scm (php-8.5)[arguments]: Add modules.
<#:phases>: Add regenerate-ssl-certs phase.

Fixes: guix/guix#8040
Change-Id: Ib6911c5967f67a250a9270837d37caf42a498018
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Modified-by: Ludovic Courtès <ludo@gnu.org>
 2026-04-27 10:03:04 +02:00
Charles Roelli 48569a2977 gnu: python-django: Update to 5.2.13. 
* gnu/packages/django.scm (python-django): Update to 5.2.13.

Change-Id: Ib58a87c42b04549529f1e6d92c31acd1b8650037
Merges: https://codeberg.org/guix/guix/pulls/8119
Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Nguyễn Gia Phong <cnx@loang.net>
 2026-04-27 16:44:07 +09:00
Rodion Goritskov 35d94c2709 gnu: nginx: Enable HTTP3/QUIC. 
* gnu/packages/web.scm (nginx)[#:configure-flags]: Add --with-http_v3_module.

Change-Id: Ied07f887bf700451b32fae381fa39f5e77ad76d4
Merges: https://codeberg.org/guix/guix/pulls/8136
Signed-off-by: Nguyễn Gia Phong <cnx@loang.net>
 2026-04-27 16:35:07 +09:00
Efraim Flashner c2b3c7a00b gnu: vim-full: Don't overwrite configure flags. 
* gnu/packages/vim.scm (vim-full)[arguments]: Adjust the inherited
configure-flags instead of prepending configure-flags to the inherited
arguments.

Fixes: guix/guix#8116
Change-Id: I522b03620ffe6668876843b30bb90f44e521484d
 2026-04-27 08:54:42 +03:00
jgart 0c1d342191 gnu: trealla: Update to 2.94.4. 
* gnu/packages/prolog.scm (trealla): Update to 2.94.4.

Change-Id: I1e3fd231fa11ac47ce89eeb986b2c2d0969ae7cf
 2026-04-26 21:59:16 -04:00
moksh f90adbd63b gnu: syncthing: Update to 2.0.16. 
* gnu/packages/syncthing.scm (syncthing): Update to 2.0.16.

Merges: https://codeberg.org/guix/guix/pulls/8160
Change-Id: I3272857ea3d73b0a206ff878333e6339a2e815ca
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-04-26 22:45:13 +01:00