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e7d84d121e5a91c5f96b00e9dd3270595aa94194
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165714 Commits

Author SHA1 Message Date
Nicolas Graves e7d84d121e gnu: temper-exporter: Switch to pyproject. 
* gnu/packages/monitoring.scm (temper-exporter):
[arguments]<#:tests?>: Enable them.
<#:test-flags>: Ignore failing test.
<#:phases>: Refresh them.
[native-inputs]: Add python-setuptools.  Remove python-pytest-runner.

Change-Id: I5880ca3700cf40e876e42b95410d5c76668c5806
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:10 +01:00
Giacomo Leidi 03fd94c437 gnu: python-pyinotify: Reduce package closure size. 
This Python package can be used both as a library and as a standalone
command line application.  It does so by adding a shebang to the library
code. Dropping this shebang prevents the build system from adding
python-wrapper as an input, reducing package closure size from
~200 MiB to ~0.2 MiB.  A new python-pyinotify-cli package is added to
allow users who desire so to use the CLI application.

* gnu/packages/python-xyz.scm (python-pyinotify)[phases]{drop-shebang}:
New phase.
(python-pyinotify-cli): New variable.

Change-Id: Ifb796d26fc6a7bedec69093f7c9bd43ada8bebac
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:09 +01:00
Nicolas Graves d94936546a gnu: gnome-plots: Switch to pyproject. 
* gnu/packages/gnome-xyz.scm (gnome-plots):
[build-system]: Switch to pyproject-build-system.
[arguments]: Relocate field.
<#:imported-modules, #:modules, #:phases>: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.

Change-Id: I8bb462e4b67b2f692949540e91c4d4498b9d17aa
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:08 +01:00
Nicolas Graves 9558fe34d6 gnu: python-libevdev: Update to 0.13.1. 
* gnu/packages/freedesktop.scm (python-libevdev): Update to 0.13.1.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:phases>: Remove 'check phase replacement.
[native-inputs]: Add python-setuptools.
[description]: Improve style.

Change-Id: I3fe76e0923e3606c027cc98e6aadc6ca63be3a26
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:07 +01:00
Nicolas Graves 655ab0ea1a gnu: mkbootimg: Switch to copy-build-system. 
* gnu/packages/android.scm (mkbootimg):
[arguments]: Drop them.
<#:install-plan>: Set it.
[build-system]: Switch to copy-build-system.
[inputs]: Add python-wrapper.
[source, description]: Improve style.

Change-Id: I72c80fea6bd7120f70302a927ae7fa67b5bb5030
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:06 +01:00
Nicolas Graves f5761684c3 gnu: mdpo: Update to 2.1.4. 
* gnu/packages/gettext.scm (mdpo): Update to 2.1.4.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:test-flags>: Ignore failing tests.
[native-inputs]: Add python-hatchling, python-pytest,
python-setuptools.
[propagated-inputs]: Add python-importlib-metadata-argparse-version,
python-md-ulb-pwrap, python-polib.

Change-Id: I53fb5cc3cb54cf847b4057b71e0a43d268dc93ef
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:06 +01:00
Nicolas Graves 18b7f23ef3 gnu: python-pymd4c: Update to 1.3.0. 
* gnu/packages/python-xyz.scm (python-pymd4c): Update to 1.3.0.
[arguments]<#:tests?, #:test-flags>: Enable tests.
[native-inputs]: Add python-pytest.

Change-Id: I80c0cfcc2414bdf6b773d06097e103d8fa4b8724
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:05 +01:00
Nicolas Graves c635555165 gnu: Add python-importlib-metadata-argparse-version. 
* gnu/packages/python-xyz.scm (python-importlib-metadata-argparse-version): New variable.

Change-Id: I729aac550bdbd20a76e9f8832131b38aea56a61c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:04 +01:00
Nicolas Graves d97c693963 gnu: Add python-md-ulb-pwrap. 
* gnu/packages/python-xyz.scm (python-md-ulb-pwrap): New variable.
* gnu/packages/rust-crates.scm: Add crates for md_uld_pwrap.

Change-Id: I04b243575a48f607db18459521a55cc69c2ddeaf
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:03 +01:00
Nicolas Graves 2f24bf2d68 gnu: Add python-unicode-linebreak. 
* gnu/packages/python-xyz.scm (python-unicode-linebreak): New variable.
* gnu/packages/rust-crates.scm: Add crates for unicode_linebreak.

Change-Id: I3f1fbea07e72bd24d9f679183277c9bc2290d56a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:02 +01:00
Nicolas Graves bca7df248f gnu: python-dbusmock: Update to 0.37.2. 
* gnu/packages/python-xyz.scm
(python-dbusmock-check-phase): New variable, to reduce redundancy;
(python-dbusmock): Update to 0.37.2.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]: Migrate them to pyproject-build-system.
<#:phases>: In phase 'patch-path, remove unecessary substitution. Use
python-dbusmock-check-phase.
[native-inputs]: Add python-setuptools.
(python-dbusmock-minimal)[source, arguments, build-system, inputs]:
Adapt fields to keep the same derivation and avoid rebuilds.

Change-Id: I6db0afffc74388fe19025457d7699993e2218666
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:02 +01:00
Nicolas Graves 33692180e3 gnu: python-pyinotify: Switch to pyproject. 
* gnu/packages/python-xyz.scm (python-pyinotify):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.
[description]: Improve style.

Change-Id: Iad18dc462ad8d0c6ec2556fd7891fe0c952fff6d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:01 +01:00
Sharlatan Hellseher 63fe654f4e gnu: python-jinja2-time: Disable tests. 
* gnu/packages/python-xyz.scm (python-jinja2-time):
[arguments] <tests?>: Disable for now.
[native-inputs]: Remove python-pytest.

Change-Id: Ic4696e026980ebaf7e1301c33f2b7e4861ed1d92
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:00 +01:00
Nicolas Graves 6435bf8cb7 gnu: python-pypeg2: Switch to pyproject. 
* gnu/packages/python-xyz.scm (python-pypeg2):
[build-system]: Switch to pyproject-build-system.
[arguments]<#:tests?>: Enable them.
[native-inputs]: Add python-pytest, python-setuptools.
[description]: Improve style.

Change-Id: I354cf087b2076bf7bd4643290429a4e4630ca004
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:59 +01:00
Nicolas Graves c704e61297 gnu: python-jellyfish: Update to 1.2.1. 
* gnu/packages/rust-crates.scm: Import crates.
* gnu/packages/python-xyz.scm (python-jellyfish): Update to 1.2.1.
[build-system]: Switch to pyproject-build-system (maturin).
[arguments]: Rewrite them all to accomodate maturin.
[native-inputs]: Add python-pytest, python-setuptools, rust,
rust:cargo.
[inputs]: Add maturin and jellyfish cargo inputs.
[home-page]: Update it.

Change-Id: I07e0b6ae05e80027c28de024777bba393e919c2b
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:58 +01:00
Nicolas Graves 8e7144b14b gnu: python-emoji-for-gh-md-to-html: Switch to pyproject. 
* gnu/packages/python-xyz.scm (python-emoji-for-gh-md-to-html):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-pytest, python-setuptools.

Change-Id: I929e6fe0841332521fa3f0c6d9fdbd7d2f82efec
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:58 +01:00
Nicolas Graves 441fa7921c gnu: python-pebble: Update to 5.1.3. 
* gnu/packages/python-xyz.scm (python-pebble): Update to 5.1.3.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.

Change-Id: Ifee70d9f208865b7e9cb96950c7de428f01758ab
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:57 +01:00
Nicolas Graves a906bfacc3 gnu: python-notify2: Switch to pyproject. 
* gnu/packages/python-xyz.scm (python-notify2):
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.

Change-Id: I6684841f7f1a89ad539ad2c8fe1eca17c9193378
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:56 +01:00
Nicolas Graves 7622a9909e gnu: python-jinja2-time: Switch to pyproject. 
* gnu/packages/python-xyz.scm (python-jinja2-time):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-pytest, python-setuptools.

Change-Id: I425584b6c6f06451e71e5b593eca90d73b9250bf
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:55 +01:00
Nicolas Graves a3630fbf54 gnu: python-crossenv: Update to 1.6.1. 
* gnu/packages/python-xyz.scm (python-crossenv): Update to 1.6.1.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-hatchling.
[description]: Improve style.

Change-Id: Ic5fe3baf91dd4aa71d92c8b54d433e55d1ada17c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:54 +01:00
Cayetano Santos b11c3483c3 gnu: magic: Update to 8.3.590. 
* gnu/packages/electronics.scm (magic): Update to 8.3.590.

Change-Id: I2ec3333c9b195e070f347b0de6c0b516e4ed981e
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:54 +01:00
Cayetano Santos 0bf7327d0e gnu: m8c: Update to 2.2.2. 
* gnu/packages/electronics.scm (m8c): Update to 2.2.2.

Change-Id: Ie96cf4325009b733977f0fe19a80b9964c249db4
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:53 +01:00
Sharlatan Hellseher a60fa26e89 gnu: python-django-allauth: Update to 65.13.1. 
* gnu/packages/django.scm (python-django-allauth): Update to 65.13.1.
[propagated-inputs]: Remove python-requests-oauthlib; add
python-pyyaml and python-oauthlib.

Change-Id: Ib9dd7d2bb64990caf6a7285705075f7c779b9ebb
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:52 +01:00
Nicolas Graves ab3fd8a4e8 gnu: z3: Switch to pyproject. 
* gnu/packages/maths.scm (z3):
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.
<#:phases>: Replace phase 'compile-python-modules by the one in
pyproject-build-system.

Change-Id: Ie74daad5cd152bd80447219a9c82fa7d0827ac9b
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:51 +01:00
Nicolas Graves e292f21d68 gnu: quodlibet: Switch to pyproject. 
* gnu/packages/music.scm (quodlibet):
[build-system]: Switch to pyproject-build-system.
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.
<#:phases>: Improve phase 'wrap-extra-paths.
[native-inputs]: Add python-setuptools.

Change-Id: Icb9b41dfc3e16fbf0d98d5a4f01b8cb18b6eca83
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:51 +01:00
Nicolas Graves 78f8e9d760 gnu: fp16: Switch to pyproject. 
* gnu/packages/maths.scm (fp16):
[arguments]<#:modules, #:imported-modules, #:phases>: Switch to
pyproject-build-system.

Change-Id: I6ca525ea3f5704b4afce39837c21e704e2a13370
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:50 +01:00
Nicolas Graves c28ec26998 gnu: python-ipydatawidgets: Switch to pyproject. 
* gnu/packages/jupyter.scm (python-ipydatawidgets):
[build-system]: Switch to pyproject-build-system.
[arguments]: Improve style.
<#:phases>: Migrate 'check phase replacement to <#:test-flags>.
Use 'build and 'install phases from the python-build-system, as it
currently fails for the pyproject-build-system.
[native-inputs]: Add python-setuptools.

Fixes: guix/guix#5524
Change-Id: I410c5fa6ba4cc95bae2e5ace227a4ad07ebc118b
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:49 +01:00
Nicolas Graves 0a70c5790f gnu: jupyter: Switch to pyproject. 
* gnu/packages/jupyter.scm (jupyter):
[build-system]: Switch to pyproject-build-system.
[arguments]: Improve comment and style.
[native-inputs]: Add python-setuptools.

Change-Id: I6056c60a1ddb822b9b80bee606add58420246c4e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:48 +01:00
Nicolas Graves de3f863638 gnu: pass-rotate: Switch to pyproject. 
* gnu/packages/password-utils.scm (pass-rotate):
[source, home-page]: Update repository url.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:tests?>: Disable them.
[native-inputs]: Add python-setuptools.

Change-Id: I0216f6f8edd2b0c69b43a99a678b4f42886e50c2
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:47 +01:00
Nicolas Graves 8a7939711c gnu: qspectrumanalyzer: Switch to pyproject. 
* gnu/packages/radio.scm (qspectrumanalyzer):
[build-system]: Switch to pyproject-build-system.
[arguments]: Relocate them, improve style.
<#:phases>: Relocate phase 'wrap-path.
[native-inputs]: Add python-setuptools.

Change-Id: I4b236b72ed0d680a5c03fa3d29200830f31833d6
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:47 +01:00
Nicolas Graves 4ee5d75ff4 gnu: xpra: Switch to pyproject. 
* gnu/packages/xorg.scm (xpra):
[build-system]: Switch to pyproject-build-system.
[arguments]<#:configure-flags>: Migrate them.
<#:modules>: Drop them.
<#:phases>: Drop phase 'build.
[native-inputs]: Add python-setuptools.

Change-Id: Ie712c67991d1e4c399d65e0243f6161d9cb28492
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:46 +01:00
Nicolas Graves fb5b733fa4 gnu: kapidox: Switch to pyproject. 
* gnu/packages/kde-frameworks.scm (kapidox):
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.

Change-Id: Idedbc3901ddb80969d23cff179abf79743ec13cb
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:45 +01:00
Nicolas Graves 58b25cc90b gnu: python2-pycparser: Move to (gnu packages pypy). 
* gnu/packages/python-xyz.scm (python2-pycparser): Move from here…
* gnu/packages/pypy.scm (python2-pycparser): …to here.

Change-Id: I368e7fc7c07dcba675c1f7524e7f68145252cf73
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:44 +01:00
Nicolas Graves dc540ecc37 gnu: python2-cffi: Move to (gnu packages pypy). 
* gnu/packages/libffi.scm (python2-cffi): Move from here…
* gnu/packages/pypy.scm (python2-cffi): …to here.

Change-Id: Ib472d2187a118c1dfec62ea9285d48fe63438fbf
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:43 +01:00
Nicolas Graves da484bd577 gnu: python2-cffi: Migrate to pyproject and decouple. 
Rationale: Decoupling helps us moving the package, and not worry about
inheriting package updates.

* gnu/packages/python-xyz.scm (python2-cffi)
[inherit]: Drop it.
[source]: Decrease version to 1.15.1, which is the last supported
version for Python2. The former build fails with 1.17.0.
[build-system, arguments]: Migrate to pyproject-build-system.
[name, home-page, synopsis, description, license]: Set them
explicitely.

Change-Id: Iea81e4fd3896da044a97043e2d80f5f43b28f50e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:43 +01:00
Nicolas Graves 920e8a7344 gnu: python2-pycparser: Migrate to pyproject and decouple. 
Rationale: Decoupling helps us moving the package, and not worry about
inheriting package updates.

* gnu/packages/python-xyz.scm (python2-pycparser)
[inherit]: Drop it.
[build-system, arguments]: Migrate to pyproject-build-system.
[name, home-page, synopsis, description, license]: Set them
explicitely.
[native-inputs]: Add python-setuptools.

Change-Id: Ie55f1fdc60d80ec921acabced218ec758a650cf1
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:42 +01:00
Nicolas Graves b7f4cf4f46 gnu: duplicity: Remove python-lockfile propagated-input. 
* gnu/packages/backup.scm (duplicity)[propagated-input]: Remove
python-lockfile.

Change-Id: Ieaa7330354c96aee0ee4c754419b10380f24acda
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:40 +01:00
Nicolas Graves ba94b24f93 gnu: python-cachecontrol: Remove python-lockfile propagated-input. 
* gnu/packages/python-web.scm (python-cachecontrol)[propagated-input]:
Remove python-lockfile.

Change-Id: I9801a3673d1e655148a7d9a76cb4026c26fca69d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:39 +01:00
Nicolas Graves fae2a5bb8f gnu: python-daemon: Replace python-lockfile by python-filelock. 
* gnu/packages/python-xyz.scm (python-daemon)[propagated-inputs]:
Replace python-lockfile by python-filelock.

* gnu/packages/patches/python-daemon-relax-lockfile.patch: New file
* gnu/local.mk (dist_patch_DATA): Register patch.

Change-Id: Ia12b754065a71b612b0fe626b18e2edc9d158ae7
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:39 +01:00
Nicolas Graves 430b98bfaf gnu: python-pyvista: Ignore failing test. 
* gnu/packages/python-science.scm (python-pyvista)[arguments]
<#:test-flags>: Ignore failing test.

Change-Id: I0dba730e92c7fd7e9d7d6273bba3b5e7646278c2
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:38 +01:00
Nicolas Graves c2a6e6acd9 gnu: python-pyts: Update to 0.13.0-0.4f3d97b. 
* gnu/packages/python-science.scm (python-pyts): Update to 0.13.0-0.4f3d97b.
[source]: Switch to git-fetch.
[native-inputs]: Remove python-wheel.
[description]: Improve it.

Change-Id: I64947107888826ad3db8cf1e2e4d3790c6a3e070
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:37 +01:00
Nicolas Graves 8d565c65d5 gnu: python-pgmpy: Ignore flaky tests. 
* gnu/packages/statistics.scm (python-pgmpy)[arguments]
<#:test-flags>: Ignore additional flaky tests.

Change-Id: I047cf08cde1d6c2157e826e80f6f93e5a9717438
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:36 +01:00
Nicolas Graves 8a77fdc3f9 gnu: python-drep: Skip additional test. 
* gnu/packages/bioinformatics.scm (python-drep)[arguments]
<#:test-flags>: Skip additional test.

Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:35 +01:00
Nicolas Graves dcca820951 gnu: scregseg: Skip 'sanity-check phase. 
* gnu/packages/bioinformatics.scm (scregseg)
[arguments]<#:phases>: Skip 'sanity-check phase.
[native-inputs]: Add python-pytest.

Change-Id: If28faf66025e79210850080a18b8ce35d9ec6504
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:35 +01:00
Nicolas Graves 9c42493979 gnu: python-coolbox: Fix inputs. 
* gnu/packages/bioinformatics.scm (python-coolbox)
[native-inputs]: Remove python-pybbi.
[propagated-inputs]: Add python-pybbi.

Change-Id: Ic748f66b71b0aa489e8c0800b21cb23592f285a4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:34 +01:00
Sharlatan Hellseher 93001fcbd0 gnu: python-sphinx-autodoc-typehints: Update to 2.3.0. 
* gnu/packages/sphinx.scm (python-sphinx-autodoc-typehints): Update to 2.3.0.
[arguments] <test-flags>: Rework skpped tests.
[native-inputs]: Remove nss-certs-for-test and python-nptyping.

Change-Id: Iaf7fbcf27dd4334c04acaf0efec27e0d3f140b82
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:33 +01:00
Sharlatan Hellseher 069fdefec8 gnu: Remove python-pynbody-1. 
* gnu/packages/astronomy.scm (python-pynbody-1): Delete variable.

Fixes: guix/guix#4801
Change-Id: If3461a85679cf0ff46eaeb50bcd0cc4c7eb78b16
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:32 +01:00
Sharlatan Hellseher 5e5e1b95c7 gnu: Remove python-aioredis. 
* gnu/packages/databases.scm (python-aioredis): Delete variable.

Change-Id: If859740f6bb38fc42ae42df577d0a8c48d2af7c3
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:31 +01:00
Sharlatan Hellseher fd7898ef45 gnu: python-genomepy: Update to 0.16.3. 
* gnu/packages/bioinformatics.scm (python-genomepy): Update to 0.16.3.
[source]: Switch to git-fetch.
[native-inputs]: Remove python-pytest.

Change-Id: Iab4a30e7fb4ff31243ae0c210155a2d1896bd3cb
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:30 +01:00
Sharlatan Hellseher 35dce1ef55 gnu: python-mysql-connector-python: Skip one more test. 
* gnu/packages/python-xyz.scm (python-mysql-connector-python):
[phases]{check}: Skip one more test.

Change-Id: I22277bc3cdf0634b166f3198d005c82c37b8796f
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:30 +01:00