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Commit Graph

87 Commits

Author SHA1 Message Date
Sharlatan Hellseher
8f17262ceb gnu: python-fenics-fiat: Refresh package, fix build.
This package is quite dated and upstream no longer maintains it: "This
repository was archived by the owner on Feb 21, 2022. It is now
read-only." <https://bitbucket.org/fenics-project/fiat> ->
<https://github.com/FEniCS/fiat> while providing a new refactored
fork <https://github.com/firedrakeproject/fiat>.

* gnu/packages/simulation.scm (python-fenics-fiat)
[build-system]: Swap to pyproject-build-system.
[arguments] <test-flags>: Move tests skip logic here.
<phases>: Use default 'check.
[native-inputs]: Add python-setuptools and python-wheel.
[description]: Adjust fill column indentation.

Change-Id: Ifea4430b1e49491f1b145702ec6df58153a9c809
2025-03-23 00:12:27 +00:00
Sharlatan Hellseher
f2b3c36bee gnu: python-fenics-dijitso: Fix build.
* gnu/packages/simulation.scm (python-fenics-dijitso): Improve style,
fix build, use G-Expressions.
[phases] {check}: Respect tests? flag.
[native-inputs]: Add python-pytest-cov.

Change-Id: I4032735228d36366a7014b48e9d21606628c56a6
2025-01-27 21:22:32 +00:00
Nicolas Graves
3c2943b621 gnu: build-system/pyproject: Add missing native-inputs.
* gnu/packages/bioinformatics.scm (python-ega-download-client)
[native-inputs]: Add python-setuptools and python-wheel.

* gnu/packages/databases.scm (datasette)[native-inputs]: Add
python-pip.

* gnu/packages/django.scm (python-django-localflavor,
python-django-contact-form)[native-inputs]: Add python-setuptools and
python-wheel.

* gnu/packages/graphviz.scm (python-uqbar)[native-inputs]: Add
python-setuptools and python-wheel.

* gnu/packages/jupyter.scm (python-jupyterlab-server)[native-inputs]:
Add python-wheel.
(python-nbstripout)[native-inputs]: Add python-setuptools and
python-wheel.

* gnu/packages/machine-learning.scm (python-captum,
python-linear-operator, python-gpytorch)[native-inputs]: Add
python-setuptools.

* gnu/packages/music.scm (abjad, abjad-ext-rmarkers,
abjed-ext-nauert, python-mutagen)[native-inputs]: Add
python-setuptools and python-wheel.

* gnu/packages/package-management.scm
(python-conda-package-handling)[native-inputs]: Add python-setuptools
and python-wheel.
(conda)[native-inputs]: Add python-wheel.

* gnu/packages/python-check.scm (python-pyinstrument,
python-pytest-testmon, python-pytest-trio, python-nbval,
python-pytest-toolbox)[native-inputs]: Add python-setuptools and
python-wheel.
(python-nptyping)[native-inputs]: Add python-setuptools.

* gnu/packages/python-check.scm (python-dask-expr)[native-inputs]:
Add python-setuptools and python-wheel.

* gnu/packages/python-web.scm (parfive, python-aioftp, python-hupper,
python-sanic, python-mechanicalsoup, python-tinycss, python-aiostream,
python-cbor2, gunicorn)[native-inputs]: Add python-setuptools and
python-wheel.

* gnu/packages/python-xyz.scm (python-apprise, python-jaraco-classes,
python-sparse, python-shtab, python-pyan3)[native-inputs]: Add
python-setuptools.
(python-jupytext, python-orderedmultidict, python-identify, python-nodeenv,
python-cfgv, python-zarr, python-multipart, python-nbconvert, python-cram,
python-immutables, python-numpydoc, python-cairosvg, python-unidecode,
python-black, python-multidict, python-mpv-jsonipc, python-humanize,
python-cmd2)[native-inputs]: Add python-setuptools and python-wheel.
(python-partd, python-dask, python-zarr)[native-inputs]: Add
python-wheel.
(python-nbconvert)[propagated-inputs]: Add texlive-etoolbox. Remove
duplicate textlive-jknapltx.
(python-isort)[native-inputs]: Add python-pip.

* gnu/packages/simulation.scm (python-fenics-dijitso)[native-inputs]:
Add python-setuptools and python-wheel.

* gnu/packages/sphinx.scm (python-pydata-sphinx-theme,
python-sphinx-autodoc-typehints)[native-inputs]: Add
python-setuptools.

* gnu/packages/syndication.scm (tuir)[native-inputs]: Add
python-setuptools and python-wheel.

* gnu/packages/terminals.scm (python-halo)[native-inputs]: Add
python-setuptools and python-wheel.

* gnu/packages/time.scm (python-arrow, python-dateutil)
[native-inputs]: Add python-setuptools and python-wheel.

* gnu/packages/version-control.scm (pre-commit)[native-inputs]: Add
python-setuptools and python-wheel.  Remove input labels.

* gnu/packages/virtualization.scm (python-qemu-qmp,
python-transient)[native-inputs]: Add python-setuptools and
python-wheel.

* gnu/packages/xorg.scm (python-xcffib)[native-inputs]: Add
python-setuptools and python-wheel.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

Change-Id: Id61cf8cdc47bd4c2871c0a9c8e9a5bfd51157df0
2024-12-13 20:18:58 +00:00
Nicolas Graves
b3435d3ed1 gnu: python-fenics-dijitso: Move to pyproject-build-system.
* gnu/packages/simulation.scm (python-fenics-dijitso):
  [build-system]: Move to pyproject-build-system.
  [arguments]<#:phases>: Rewrite check phase replacement to care about
  .guix-pytest.

Change-Id: I3383f4078fbb0100e6d8257d7d84785b953ab0cf
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-12-13 20:18:57 +00:00
Gabriel Wicki
8d05f0c8db gnu: Fix synopsis in various python packages.
* gnu/packages/python-compression.scm (python-inflate64): Fix synopsis.
* gnu/packages/python-science.scm (python-xarray-dataclasses): Fix synopsis.
* gnu/packages/python-web.scm (python-waybackpack): Fix synopsis.
* gnu/packages/python-xyz.scm (python-mir-eval): Fix synopsis.
(python-restructuredtext-lint): Fix synopsis.  (python-pixelmatch): Fix
synopsis.  (python-google-pasta): Fix synopsis.  (python-xmp-toolkit): Fix
synopsis.
* gnu/packages/bioinformatics.scm (python-mgatk): Fix synopsis.
* gnu/packages/rpc.scm (python-grpc-stubs): Fix synopsis.
* gnu/packages/simulation.scm (python-commonroad-io): Fix synopsis.

Signed-off-by: Vagrant Cascadian <vagrant@debian.org>
2024-12-10 22:35:06 -08:00
Sharlatan Hellseher
a1e6ac72fd gnu: packages/simulation: Add self to copyright header.
* gnu/packages/simulation.scm: Add Sharlatan Hellseher
<sharlatanus@gmail.com> to copyright header.

Change-Id: I18e82c7344cfa206ff8f82dfa963b7d8b026dcf0
2024-07-11 19:15:10 +01:00
Sharlatan Hellseher
a54f6f1c87 gnu: python-dolfin-adjoint: Disable failing tests, fix build.
* gnu/packages/simulation.scm (python-dolfin-adjoint) [arguments]:
<#:test-flags>: Explicitly ignore failing tests during collection phase
and some tests during runt test phase.
<#:phases>: Change HOME env to GETCWD in 'set-environment-variable phase.

Change-Id: Ibee5e45052a3828b4522752a87c97367d7caec65
2024-07-11 19:15:10 +01:00
Sharlatan Hellseher
72024ae490 gnu: python-dolfin-adjoint: Swap to pyproject-build-system.
* gnu/packages/simulation.scm (python-dolfin-adjoint) [source]: Remove
trailing #t from snippet.
[build-system]: Swap to pyproject-build-system.
[arguments]: Apply G-expressions. <#:phases>: Swap back to defaul 'check
phase.

python-dolfin-adjoint

Change-Id: Idf100b718b44d9d6695e598c434fbbac55a38845
2024-07-11 19:15:10 +01:00
Sharlatan Hellseher
9da142540e gnu: python-dolfin-adjoint: Adjust package style.
* gnu/packages/simulation.scm (python-dolfin-adjoint): Move inputs after
arguments.
[description]: Place it on a new line, fix indentation.

Change-Id: I3d971e48b4072258ed0b41af5c202e64af9de8f3
2024-07-11 19:15:10 +01:00
Sharlatan Hellseher
5a33a71e67 gnu: python-dolfin-adjoint: Fix indentation.
* gnu/packages/simulation.scm (python-dolfin-adjoint): Fix indentation.

Change-Id: I457639a98f1ae49d43042e557352d390afc9419d
2024-07-11 19:15:09 +01:00
Liliana Marie Prikler
30dc74d027 gnu: esmini: Update to 2.37.11.
* gnu/packages/simulation.scm (esmini): Update to 2.37.11.
[arguments]<#:configure-flags>: Add “-DUSE_IMPLOT=FALSE”.
<#:phases>: Adjust accordingly.
* gnu/packages/patches/esmini-use-pkgconfig.patch: Update accordingly.
* gnu/packages/patches/esmini-no-clutter-log.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2024-06-23 10:09:00 +02:00
Ricardo Wurmus
22030634ef gnu: python-commonroad-io: Relax requirements.
* gnu/packages/simulation.scm (python-commonroad-io)[arguments]: Accept 3.20.2
when 3.20.1 is wanted.

Change-Id: I5ad0689f827eda8ec1a7ec74008d04fb6d9f5870
2024-04-22 11:29:31 +02:00
Romain GARBAGE
03951f5a66 gnu: fenics-dolfin: Remove dependency on lapack.
* gnu/packages/simulation.scm (fenics-dolfin): Remove input dependency
from to lapack.

Change-Id: Ie60437e365c45e92f03ac3f147ec41eba40e2963
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04 16:17:30 +02:00
Sharlatan Hellseher
e257de4365 gnu: emulators: Adjust copyright header.
This is follow up commit 9ffdcb2492.

* gnu/packages/emulators.scm: Update copyright for "Felix Gruber
<felgru@posteo.net>".
* gnu/packages/simulation.scm: Remove "Copyright © 2024 Felix Gruber
<felgru@posteo.net>".

Change-Id: I3f39abb0fbe05e7c6af9715fb6cc41c20b6f0a45
2024-02-10 15:58:51 +00:00
Felix Gruber
9ffdcb2492 gnu: sameboy: Update to 0.16.2.
* gnu/packages/emulators.scm (sameboy): Update to 0.16.2.

Change-Id: I86a31cfca9e69d63d3cb6a13d5db88a6b1abe2a8
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-10 13:33:55 +00:00
Felix Gruber
46f36ac969 gnu: python-dolfin-adjoint: Fix build.
* gnu/packages/simulation.scm (python-dolfin-adjoint): Fix build.
  [arguments]: Disable failing test_read_checkpoint in 'check phase.
  Remove broken 'sanity-check phase.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-08-29 22:07:48 +02:00
Ludovic Courtès
caa30ff2f1 gnu: openfoam-org: Use 'git-fetch'.
So far the source was taken from an auto-generated, unstable tarball at
github.com.  This fixes that.

* gnu/packages/simulation.scm (openfoam-org)[source]: Switch to
'git-fetch'.
[arguments]: Add 'rename-self' phase.
2023-08-11 00:50:47 +02:00
reza
997b38bada gnu: Add openfoam-com.
* gnu/packages/simulation.scm (openfoam-com): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-08-10 09:26:08 +02:00
reza
5d77091cfc gnu: Add openfoam-org. Deprecate openfoam.
* gnu/packages/patches/openfoam-4.1-cleanup.patch: Delete file.
* gnu/local.mk: Remove it.
* gnu/packages/simulation.scm (openfoam-org): New variable.
(openfoam): Mark as deprecated.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-08-10 09:26:08 +02:00
Christopher Baines
ad08f9331f gnu: simulation: Fix duplicate open-simulation-interface.
Give the python variant a different name, and fix the build.

* gnu/packages/simulation.scm (python-open-simulation-interface)[name]: Set.
[propagated-inputs]: Add python-pyyaml and python-protobuf.
2023-07-17 09:14:47 +01:00
Ludovic Courtès
eb64632422 gnu: fenics-dolfin, fenics: Remove input labels.
* gnu/packages/simulation.scm (fenics-dolfin)[inputs, native-inputs]
[propagated-inputs]: Remove labels.  Replace CATCH2-1, which was
actually unused, by CATCH-FRAMEWORK.
[arguments]: Rewrite using gexps.  Adjust 'set-paths' phase accordingly.
(fenics): Likewise.
2023-06-24 16:19:36 +02:00
Ludovic Courtès
9a86e2e97f gnu: fenics: Make sure 'jit.py' can find 'dolfin.pc'.
* gnu/packages/simulation.scm (fenics)[inputs]: Move PYTHON-PKGCONFIG
to...
[propagated-inputs]: ... here.
[arguments]: Add 'set-dolfin-pc-file-name' phase.
2023-06-24 16:19:33 +02:00
Tobias Geerinckx-Rice
1e6ddceb83 gnu: Use HTTPS package home pages wherever possible.
* gnu/packages/accessibility.scm (florence)[home-page]: Use HTTPS.
* gnu/packages/admin.scm (netcat, nmon)[home-page]: Likewise.
* gnu/packages/algebra.scm (mpfrcx, cm, flint, fftw, r-dtt)[home-page]:
Likewise.
* gnu/packages/apr.scm (apr, apr-util)[home-page]: Likewise.
* gnu/packages/aspell.scm (aspell-dict-it)[home-page]: Likewise.
* gnu/packages/astronomy.scm (casacore, sextractor, libnova)
(xplanet)[home-page]: Likewise.
* gnu/packages/audio.scm (libtimidity, alsa-modular-synth, azr3, tao)
(freepats, rakarrack, liblo, libshout-idjc, timidity++, libsbsms)
(libmodplug, libxmp, xmp, sox, drc, gsm, gnaural)
(streamripper)[home-page]: Likewise.
* gnu/packages/authentication.scm (pamtester)[home-page]: Likewise.
* gnu/packages/backup.scm (grsync)[home-page]: Likewise.
* gnu/packages/bioconductor.scm (r-nmf, r-edger, r-limma)
(r-plgem)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (python-biom-format, bowtie, bowtie1)
(bwa, crossmap, java-htsjdk, java-htsjdk-latest, java-picard)
(java-picard-2.10.3, kaiju, proteinortho, rsem, rseqc, seek, samtools)
(snap-aligner, subread, stringtie, r-centipede, prinseq, emboss, phylip)
(libsbml)[home-page]: Likewise.
* gnu/packages/build-tools.scm (tup)[home-page]: Likewise.
* gnu/packages/cdrom.scm (libcddb, cdrdao, cdrtools)
(cd-discid)[home-page]: Likewise.
* gnu/packages/check.scm (cunit, python-nose)
(python-pyhamcrest)[home-page]: Likewise.
* gnu/packages/chemistry.scm (gromacs)[home-page]: Likewise.
* gnu/packages/chez.scm (chez-fmt)[home-page]: Likewise.
* gnu/packages/code.scm (lcov, uncrustify, cscope)[home-page]: Likewise.
* gnu/packages/compression.scm (p7zip)[home-page]: Likewise.
* gnu/packages/cran.scm (r-emdist, r-proj4, r-zoo, r-ggalluvial)
(r-orgmassspecr, r-polychrome, r-partykit, r-rcpp, r-ff, r-emdbook)
(r-fitdistrplus, r-linprog, r-geometry, r-dtw, r-fst, r-rjags)
(r-intergraph, r-qualv, r-labelled, r-survey, r-coin, r-fmsb, r-tm)
(r-corpcor, r-rmpfr, r-spatialextremes, r-longitudinal, r-genenet)
(r-bayesm, r-seqinr, r-mpm, r-text2vec, r-rgdal, r-seewave, r-hdrcde)
(r-shapes, r-anytime, r-stm, r-d3network, r-tam, r-directlabels)
(r-spatstat-utils, r-spatstat-sparse, r-spatstat-data, r-spatstat-geom)
(r-spatstat-core, r-spatstat-linnet, r-spatstat-random, r-spatstat)
(r-rcpptoml, r-mlecens, r-seurat, r-mlearning, r-zooimage)[home-page]:
Likewise.
* gnu/packages/crates-io.scm (rust-nickel-0.11, rust-thrift-0.13)
(rust-trust-dns-https-0.20, rust-trust-dns-native-tls-0.20)
(rust-trust-dns-openssl-0.20, rust-trust-dns-proto-0.20)
(rust-trust-dns-resolver-0.20, rust-trust-dns-rustls-0.20)
(rust-uint-0.9, rust-yaml-rust-0.4)[home-page]: Likewise.
* gnu/packages/crypto.scm (libdecaf, ccrypt)[home-page]: Likewise.
* gnu/packages/curl.scm (curlpp)[home-page]: Likewise.
* gnu/packages/databases.scm (python-pylibmc, unixodbc, wiredtiger)
(libpqxx, mdbtools, virtuoso-ose, libdbi, libdbi-drivers)
(soci)[home-page]: Likewise.
* gnu/packages/debian.scm (apt-mirror)[home-page]: Likewise.
* gnu/packages/debug.scm (remake)[home-page]: Likewise.
* gnu/packages/disk.scm (sdparm, idle3-tools, duc)[home-page]: Likewise.
* gnu/packages/django.scm (python-django-haystack)[home-page]: Likewise.
* gnu/packages/djvu.scm (djvulibre, djview)[home-page]: Likewise.
* gnu/packages/dns.scm (dnsmasq)[home-page]: Likewise.
* gnu/packages/docbook.scm (dblatex, docbook2x)[home-page]: Likewise.
* gnu/packages/documentation.scm (scrollkeeper)[home-page]: Likewise.
* gnu/packages/ebook.scm (liblinebreak)[home-page]: Likewise.
* gnu/packages/electronics.scm (xoscope)[home-page]: Likewise.
* gnu/packages/emacs-xyz.scm (emacs-bbdb, emacs-caps-lock, emacs-djvu)
(emacs-pabbrev, emacs-twittering-mode, emacs-filladapt, emacs-rudel)
(emacs-stream, emacspeak, emacs-cc-mode, emacs-eldoc, emacs-jsonrpc)
(emacs-gtk-look, emacs-xclip, emacs-slime-volleyball, emacs-minimap)
(emacs-auto-dictionary-mode, emacs-persist, emacs-shell-command+)
(emacs-map, emacs-xref, emacs-dictionary)[home-page]: Likewise.
* gnu/packages/embedded.scm (sdcc)[home-page]: Likewise.
* gnu/packages/engineering.scm (asco, libngspice, libspnav)
(openctm)[home-page]: Likewise.
* gnu/packages/erlang.scm (erlang-erlware-commons)[home-page]: Likewise.
* gnu/packages/file-systems.scm (jfsutils, curlftpfs)[home-page]:
Likewise.
* gnu/packages/finance.scm (gbonds)[home-page]: Likewise.
* gnu/packages/flashing-tools.scm (dfu-util, srecord)[home-page]:
Likewise.
* gnu/packages/fltk.scm (ntk)[home-page]: Likewise.
* gnu/packages/fonts.scm (font-terminus, font-tex-gyre)
(font-comic-neue)[home-page]: Likewise.
* gnu/packages/fontutils.scm (ttf2pt1, potrace, libspiro)[home-page]:
Likewise.
* gnu/packages/fpga.scm (icestorm, gtkwave, gtkwave)
(python-myhdl)[home-page]: Likewise.
* gnu/packages/freedesktop.scm (libatasmart)[home-page]: Likewise.
* gnu/packages/ftp.scm (weex)[home-page]: Likewise.
* gnu/packages/game-development.scm (dds, python-tmx, sfxr, quesoglc)
(eureka, plib)[home-page]: Likewise.
* gnu/packages/games.scm (abe, alex4, armagetronad, barony)
(foobillard++, golly, ltris, pipewalker, prboom-plus, trigger-rally)
(cmatrix, pinball, pioneers, tennix, chromium-bsu, freeciv, kiki)
(quakespasm, frotz, frotz-dumb-terminal, frotz-sdl, btanks)
(flare-engine, chessx, barrage, cgoban, passage)[home-page]: Likewise.
* gnu/packages/geo.scm (python-geopandas, saga)[home-page]: Likewise.
* gnu/packages/gl.scm (freeglut, gl2ps)[home-page]: Likewise.
* gnu/packages/gnome.scm (cogl, clutter-gtk, clutter-gst, bluefish)
(workrave)[home-page]: Likewise.
* gnu/packages/gnustep.scm (wmnd, wmfire, wmfire)[home-page]: Likewise.
* gnu/packages/graph.scm (mscgen)[home-page]: Likewise.
* gnu/packages/graphics.scm (assimp, alembic, ctl, agg)
(opencsg)[home-page]: Likewise.
* gnu/packages/graphviz.scm (gts)[home-page]: Likewise.
* gnu/packages/gtk.scm (gtkspell3)[home-page]: Likewise.
* gnu/packages/guile-xyz.scm (guile-irregex)[home-page]: Likewise.
* gnu/packages/haskell-apps.scm (cpphs)[home-page]: Likewise.
* gnu/packages/haskell-check.scm (ghc-hunit)[home-page]: Likewise.
* gnu/packages/haskell-web.scm (ghc-http-client-restricted)
(ghc-blaze-html, ghc-happstack-server, ghc-sourcemap)[home-page]:
Likewise.
* gnu/packages/haskell-xyz.scm (ghc-assoc, ghc-cairo, ghc-cborg)
(ghc-csv, ghc-glob, ghc-gtk2hs-buildtools, ghc-hmatrix-gsl-stats)
(ghc-intervalmap, ghc-lens-family-core, ghc-managed, ghc-mountpoints)
(ghc-network-multicast, ghc-optional-args, ghc-regex, ghc-spoon)
(ghc-transformers, ghc-turtle, ghc-utf8-light, ghc-wizards)
(ghc-template-haskell, ghc-boot-th, ghc-binary-orphans)
(ghc-postgresql-simple)[home-page]: Likewise.
* gnu/packages/hexedit.scm (ht, bvi)[home-page]: Likewise.
* gnu/packages/hunspell.scm (hunspell-dict-hu)[home-page]: Likewise.
* gnu/packages/image-processing.scm (mia)[home-page]: Likewise.
* gnu/packages/image-viewers.scm (geeqie, gpicview, luminance-hdr)
(qiv)[home-page]: Likewise.
* gnu/packages/image.scm (libuemf, devil, steghide, optipng, niftilib)
(sng, mtpaint)[home-page]: Likewise.
* gnu/packages/java-xml.scm (java-simple-xml, java-jaxp)
(java-apache-xml-commons-resolver)[home-page]: Likewise.
* gnu/packages/java.scm (java-cisd-base, java-cisd-args4j)
(java-hamcrest-core, java-jsr305, java-eclipse-osgi)
(java-eclipse-equinox-common, java-eclipse-core-jobs)
(java-eclipse-equinox-registry, java-eclipse-equinox-app)
(java-eclipse-equinox-preferences, java-eclipse-core-contenttype)
(java-eclipse-text, java-treelayout, java-aopalliance, java-jeromq)
(java-cdi-api)[home-page]: Likewise.
* gnu/packages/jemalloc.scm (jemalloc-4.5.0)[home-page]: Likewise.
* gnu/packages/julia-xyz.scm (julia-recipespipeline)[home-page]:
Likewise.
* gnu/packages/kde-internet.scm (kget)[home-page]: Likewise.
* gnu/packages/kde-systemtools.scm (dolphin-plugins)
(konsole)[home-page]: Likewise.
* gnu/packages/kodi.scm (fstrcmp)[home-page]: Likewise.
* gnu/packages/language.scm (hime, libchewing)[home-page]: Likewise.
* gnu/packages/lego.scm (nqc)[home-page]: Likewise.
* gnu/packages/lesstif.scm (lesstif)[home-page]: Likewise.
* gnu/packages/libcanberra.scm (libcanberra)[home-page]: Likewise.
* gnu/packages/libdaemon.scm (libdaemon)[home-page]: Likewise.
* gnu/packages/libffi.scm (libffi)[home-page]: Likewise.
* gnu/packages/libreoffice.scm (libwpd, libwpg, libwps)[home-page]:
Likewise.
* gnu/packages/libusb.scm (libmtp, gmtp)[home-page]: Likewise.
* gnu/packages/linux.scm (e2fsprogs, extundelete, lsscsi, net-tools)
(kbd, sysfsutils, cpuid, libpfm4)[home-page]: Likewise.
* gnu/packages/lisp-check.scm (sbcl-ptester, sbcl-xlunit)[home-page]:
Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-html-encode, sbcl-py-configparser)
(sbcl-cl-utilities, sbcl-series, sbcl-uffi, sbcl-clsql, sbcl-sycamore)
(sbcl-osicat, sbcl-hu.dwim.common, sbcl-caveman, sbcl-trivial-shell)
(sbcl-trivial-benchmark, sbcl-screamer, sbcl-smug)[home-page]: Likewise.
* gnu/packages/lisp.scm (lush2)[home-page]: Likewise.
* gnu/packages/logging.scm (log4cpp)[home-page]: Likewise.
* gnu/packages/lua.scm (lua-ldoc)[home-page]: Likewise.
* gnu/packages/machine-learning.scm (mcl, openfst, rxcpp)[home-page]:
Likewise.
* gnu/packages/mail.scm (muchsync, procmail, sendmail)
(opensmtpd-filter-dkimsign, crm114)[home-page]: Likewise.
* gnu/packages/man.scm (libpipeline, man-db)[home-page]: Likewise.
* gnu/packages/maths.scm (lapack, scalapack, hdf-eos5, itpp, gmsh)
(metamath, p4est, armadillo, suitesparse, atlas, lpsolve, wcalc, why3)
(frama-c)[home-page]: Likewise.
* gnu/packages/mcrypt.scm (mcrypt, libmcrypt, libmhash)[home-page]:
Likewise.
* gnu/packages/minetest.scm (minetest-advtrains)[home-page]: Likewise.
* gnu/packages/monitoring.scm (python-whisper, python-carbon)
(hostscope)[home-page]: Likewise.
* gnu/packages/mp3.scm (id3lib, libmp3splt, mp3splt, mpg321)
(lame)[home-page]: Likewise.
* gnu/packages/multiprecision.scm (mpc)[home-page]: Likewise.
* gnu/packages/music.scm (aria-maestosa, lingot, setbfree, bristol)
(portmidi, python-pyportmidi, zynaddsubfx, yoshimi, aj-snapshot)
(schismtracker, midicsv, midicsv, qmidiarp, qmidiroute, dssi, tap-lv2)
(shiru-lv2)[home-page]: Likewise.
* gnu/packages/ncurses.scm (stfl)[home-page]: Likewise.
* gnu/packages/networking.scm (lksctp-tools, mbuffer, ifstatus, bird)
(tunctl, traceroute)[home-page]: Likewise.
* gnu/packages/node-xyz.scm (node-mersenne)[home-page]: Likewise.
* gnu/packages/ntp.scm (openntpd)[home-page]: Likewise.
* gnu/packages/ocaml.scm (opam, hevea, ocaml-menhir, ocaml-piqilib)
(ocaml-graph, cubicle)[home-page]: Likewise.
* gnu/packages/opencl.scm (python-pyopencl)[home-page]: Likewise.
* gnu/packages/package-management.scm (xstow, modules)[home-page]:
Likewise.
* gnu/packages/parallel.scm (xjobs)[home-page]: Likewise.
* gnu/packages/pdf.scm (podofo, qpdf, xournal, impressive)[home-page]:
Likewise.
* gnu/packages/perl.scm (perl-math-vecstat, perltidy)[home-page]:
Likewise.
* gnu/packages/photo.scm (libpano13, enblend-enfuse, hugin)[home-page]:
Likewise.
* gnu/packages/plan9.scm (drawterm)[home-page]: Likewise.
* gnu/packages/plotutils.scm (guile-charting, ploticus)[home-page]:
Likewise.
* gnu/packages/popt.scm (argtable, popt)[home-page]: Likewise.
* gnu/packages/profiling.scm (otf2)[home-page]: Likewise.
* gnu/packages/pulseaudio.scm (pulseaudio)[home-page]: Likewise.
* gnu/packages/python-check.scm (python-mypy)[home-page]: Likewise.
* gnu/packages/python-web.scm (python-cssutils)
(python-translationstring)[home-page]: Likewise.
* gnu/packages/python-xyz.scm (python-diskcache, python-doxyqml)
(python-docutils, python-pexpect, python-importlib-resources)
(python-simplegeneric, python-urwid, python-xlrd, python-xlwt)
(python-pyasn1, python-pythondialog, python-tftpy, python-random2)
(python-arcp, python-pyopengl, python-sortedcollections)
(python-sortedcontainers, python-yapsy, python-pydispatcher)
(python-posix-ipc)[home-page]: Likewise.
* gnu/packages/qt.scm (qwt, libqglviewer, signond)[home-page]: Likewise.
* gnu/packages/radio.scm (unixcw, gnuais)[home-page]: Likewise.
* gnu/packages/raspberry-pi.scm (bcm2835)[home-page]: Likewise.
* gnu/packages/rdf.scm (clucene, rasqal, redland)[home-page]: Likewise.
* gnu/packages/regex.scm (tre)[home-page]: Likewise.
* gnu/packages/rsync.scm (librsync)[home-page]: Likewise.
* gnu/packages/ruby.scm (ruby-packnga, ruby-nokogiri, ruby-oj, ruby-ox)
(ruby-sinatra, ruby-citrus, ruby-cbor, ruby-roda)[home-page]: Likewise.
* gnu/packages/scheme.scm (scheme48, tinyscheme)[home-page]: Likewise.
* gnu/packages/screen.scm (dtach)[home-page]: Likewise.
* gnu/packages/scsi.scm (sg3-utils)[home-page]: Likewise.
* gnu/packages/sdl.scm (libmikmod, sdl-pango)[home-page]: Likewise.
* gnu/packages/shellutils.scm (hstr, rig)[home-page]: Likewise.
* gnu/packages/simulation.scm (python-dolfin-adjoint)[home-page]:
Likewise.
* gnu/packages/smalltalk.scm (smalltalk)[home-page]: Likewise.
* gnu/packages/speech.scm (espeak)[home-page]: Likewise.
* gnu/packages/stalonetray.scm (stalonetray)[home-page]: Likewise.
* gnu/packages/statistics.scm (jags, r-mass, r-class, r-lattice)
(r-matrix, r-nnet, r-spatial, r-bit, r-bit64, r-digest, r-xtable)
(python-statsmodels, r-ade4, r-latticeextra, r-rcurl, r-xml, r-mvtnorm)
(r-robustbase, r-minqa, r-fdrtool, java-jdistlib, xlispstat)[home-page]:
Likewise.
* gnu/packages/swig.scm (swig)[home-page]: Likewise.
* gnu/packages/task-management.scm (wtime)[home-page]: Likewise.
* gnu/packages/tcl.scm (itcl, tclxml, tclx)[home-page]: Likewise.
* gnu/packages/terminals.scm (libtermkey, mlterm, libvterm)
(libvterm)[home-page]: Likewise.
* gnu/packages/tex.scm (texlive-lm, texlive-lm-math, texlive-cs)
(texlive-csplain, biber, texmaker)[home-page]: Likewise.
* gnu/packages/text-editors.scm (joe)[home-page]: Likewise.
* gnu/packages/textutils.scm (drm-tools, docx2txt)[home-page]: Likewise.
* gnu/packages/tv.scm (tvtime)[home-page]: Likewise.
* gnu/packages/unicode.scm (libunibreak)[home-page]: Likewise.
* gnu/packages/upnp.scm (libupnp)[home-page]: Likewise.
* gnu/packages/version-control.scm (cvs)[home-page]: Likewise.
* gnu/packages/video.scm (transcode, libquicktime, mjpegtools, aalib)
(liba52, libmpeg2, x265, libdv, dvdauthor, aegisub, pitivi, gavl)
(dvdbackup, guvcview, video-contact-sheet)[home-page]: Likewise.
* gnu/packages/virtualization.scm (bochs)[home-page]: Likewise.
* gnu/packages/w3m.scm (w3m)[home-page]: Likewise.
* gnu/packages/web.scm (qjson, libquvi-scripts, libquvi, quvi)
(tidy-html, htmlcxx)[home-page]: Likewise.
* gnu/packages/wm.scm (evilwm, menumaker)[home-page]: Likewise.
* gnu/packages/wv.scm (wv)[home-page]: Likewise.
* gnu/packages/wxwidgets.scm (wxsvg)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (mtdev, xsel)[home-page]: Likewise.
* gnu/packages/xfig.scm (xfig, transfig)[home-page]: Likewise.
* gnu/packages/xml.scm (openjade, python-pyxb, xmlstarlet, xmlrpc-c)
(opensp)[home-page]: Likewise.
* gnu/packages/xorg.scm (xf86-video-qxl)[home-page]: Likewise.
2023-02-19 01:00:01 +01:00
Liliana Marie Prikler
015777f4c5 gnu: Add esmini.
* gnu/packages/patches/esmini-no-clutter-log.patch: New file.
* gnu/packages/patches/esmini-use-pkgconfig.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them here.
* gnu/packages/simulation.scm (esmini): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2023-02-12 08:45:36 +01:00
Liliana Marie Prikler
4a42167c3c gnu: Add python-open-simulation-interface.
* gnu/packages/simulation.scm (python-open-simulation-interface): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2023-02-12 08:45:35 +01:00
Liliana Marie Prikler
efee3dd7a1 gnu: Add open-simulation-interface.
* gnu/packages/simulation.scm (open-simulation-interface): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2023-02-12 08:45:35 +01:00
Liliana Marie Prikler
e55bc944a9 gnu: Add python-commonroad-route-planner.
* gnu/packages/simulation.scm (python-commonroad-route-planner): New variable.
2023-01-08 16:29:56 +01:00
Liliana Marie Prikler
86136b4f76 gnu: Add python-commonroad-io.
* gnu/packages/simulation.scm (python-commonroad-io): New variable.
2023-01-08 16:29:56 +01:00
Liliana Marie Prikler
59a8de6bad gnu: Add python-commonroad-vehicle-models.
* gnu/packages/simulation.scm (%commonroad-dont-install-license-at-root)
(python-commonroad-vehicle-models): New variables.
2023-01-08 16:27:59 +01:00
Marius Bakke
e05e2a7a75 gnu: python-pygmsh: Use pyproject-build-system.
* gnu/packages/simulation.scm (python-pygmsh)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
2022-10-27 19:43:07 +02:00
Liliana Marie Prikler
8663be6da7 gnu: Add sumo.
* gnu/packages/simulation.scm (sumo): New variable.
2022-10-24 20:31:34 +02:00
Maxim Cournoyer
b736af1824 gnu: catch-framework2: Rename variable to catch2.
Automated with:

    git grep -l catch-framework2 | xargs sed 's/catch-framework2/catch2/g' -i
2022-09-15 20:15:56 -04:00
Ontje Lünsdorf
b13966a907 gnu: fenics: Do not mpirun tests.
* gnu/packages/simulation.scm (fenics)[phases]: Do not use mpirun for tests
  and skip failing XDMF test.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-03 12:03:51 +02:00
Maxim Cournoyer
5125d005ed gnu: python-pygmsh: Update to 7.1.17.
* gnu/packages/simulation.scm (python-pygmsh): Update to 7.1.17.
[source]: Remove snippet and modules fields.
[origin]: Prefix tag by "v".
[phases]: Delete trailing #t.
{workaround-gmsh-detection-failure}: New phase.
{build, install}: New phase overrides.
{check}: Honor tests and remove extraneous add-installed-pythonpath call.
[native-inputs]: Remove wheel.  Add python-pypa-build and python-flit-core.
[propagated-inputs]: Remove python-importlib-metadata.
2022-06-07 09:11:55 -04:00
Paul A. Patience
6803a29db4 gnu: python-meshio: Update to 5.3.4.
* gnu/packages/simulation.scm (python-meshio): Update to 5.3.4.
[source]: Reindent.
[propagated-inputs]: Add python-rich.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-23 16:24:47 +02:00
Paul A. Patience
ec27aafcd3 gnu: python-meshio: Honor #:tests? flag.
* gnu/packages/simulation.scm (python-meshio)[arguments]: Adjust custom
'check' phase to honor the #:tests? flag. Remove unnecessary
'add-installed-pythonpath' call.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-23 16:24:46 +02:00
Paul A. Patience
c76ba27662 gnu: python-meshio: Remove trailing booleans.
* gnu/packages/simulation.scm (python-meshio)[snippet]: Remove trailing
boolean (and therefore the 'begin').
[arguments]: Remove trailing boolean.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-23 16:24:46 +02:00
Paul A. Patience
4a6acd04c3 gnu: python-meshio: Remove input labels.
* gnu/packages/simulation.scm (python-meshio)[inputs, native-inputs,
propagated-inputs]: Remove labels.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-23 16:24:46 +02:00
Paul A. Patience
b7d2644cd0 gnu: fenics: Fix sanity check.
* gnu/packages/simulation.scm (fenics)[arguments]: Relax pybind11
requirement to appease the sanity check.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06 15:23:06 +02:00
Paul A. Patience
9d5160bc8a gnu: fenics: Honor #:tests? flag.
* gnu/packages/simulation.scm (fenics)[arguments]: Adjust custom 'check'
phase to honor the #:tests? flag.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06 15:23:06 +02:00
Paul A. Patience
69505bec93 gnu: fenics-dolfin: Honor #:tests? flag.
* gnu/packages/simulation.scm (fenics-dolfin)[source]: Remove trailing
boolean.
[arguments]: Adjust custom 'check' phase to honor the #:tests? flag. While
here, remove trailing booleans.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06 15:23:06 +02:00
Eric Bavier
41b11c459b gnu: fenics-dolfin: Fix build.
* gnu/packages/patches/fenics-dolfin-algorithm.patch,
gnu/packages/patches/fenics-dolfin-boost.patch,
gnu/packages/patches/fenics-dolfin-config-slepc.patch,
gnu/packages/patches/fenics-dolfin-demo-init.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/simulation.scm (fenics-dolfin)[source]: Use them.
2022-02-05 00:24:33 -06:00
Ludovic Courtès
8394619bac gnu: Simplify package inputs.
This commit was obtained by running:

  ./pre-inst-env guix style

without any additional argument.
2021-12-13 17:48:25 +01:00
Ludovic Courtès
d9dfbf886d Merge branch 'master' into core-updates-frozen 2021-09-07 14:19:08 +02:00
Marius Bakke
b029be2ee0 Merge branch 'master' into core-updates-frozen
Conflicts:
	gnu/packages/bioinformatics.scm
	gnu/packages/cmake.scm
	gnu/packages/curl.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/gpodder.scm
	gnu/packages/music.scm
	gnu/packages/patches/glibc-bootstrap-system.patch
	gnu/packages/python-xyz.scm
	gnu/packages/shells.scm
	gnu/packages/statistics.scm
2021-07-29 22:34:57 +02:00
Paul Garlick
d6c2fc3729 gnu: python-pygmsh: Update to 7.1.11.
*gnu/packages/simulation.scm (python-pygmsh): Update to 7.1.11.
[source](snippet): Re-phrase comment.
2021-08-23 12:39:43 +01:00
Paul Garlick
2caf9eafb6 gnu: python-pygmesh: Update to 7.1.10.
* gnu/packages/simulation.scm (python-pygmah): Update to 7.1.10.
[arguments]<#:phases>: Tests have moved to the 'tests' directory.
The test_readme.py file has been removed.
2021-08-13 09:28:21 +01:00
Paul Garlick
74b82ecd0e gnu: python-pygmsh: Change source to 'git-fetch'.
* gnu/packages/simulation.scm (python-pygmsh)[source]: Change to
'git-fetch'.
2021-08-13 09:28:21 +01:00
Paul Garlick
d56a29edb7 gnu: python-pygmsh: Update snippet for Gmsh > 4.7.0.
The old field option name is not needed after commit
78595fe3650057f258109c6599f4bae1d0e72e (Gmsh 4.8.4).

* gnu/packages/simulation.scm (python-pygmsh)[source]: Remove
option name substitution.
2021-08-13 09:28:20 +01:00
Paul Garlick
b05a1eb5e3 gnu: Add python-dolfin-adjoint.
* gnu/packages/simulation.scm (python-dolfin-adjoint): New variable.
2021-07-22 10:03:53 +01:00