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ec2c7d2d48b1cc0d6ea5b779db16aa04ce2d34fd
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114493 Commits

Author SHA1 Message Date
David Elsing
ec2c7d2d48 gnu: Add suitesparse-cxsparse. 
* gnu/packages/maths.scm (suitesparse-cxsparse): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-06 12:26:46 +02:00
David Elsing
75faca26c2 gnu: Add suitesparse-cholmod. 
* gnu/packages/maths.scm (suitesparse-cholmod): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-06 12:26:46 +02:00
David Elsing
7c5d3592e7 gnu: Add metis-suitesparse. 
* gnu/packages/maths.scm (metis-suitesparse): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-06 12:26:46 +02:00
David Elsing
95ecbdc9b1 gnu: Add gklib-suitesparse. 
* gnu/packages/maths.scm (gklib-suitesparse): New variable.
* gnu/packages/patches/gklib-suitesparse.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-06 12:26:45 +02:00
David Elsing
9b5dbc46e6 gnu: Add metis-5.2. 
* gnu/packages/maths.scm (metis-5.2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-06 12:26:45 +02:00
David Elsing
998a79355c gnu: Add gklib. 
* gnu/packages/maths.scm (gklib): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-06 12:26:45 +02:00
David Elsing
a764c7c0b9 gnu: Add suitesparse-ccolamd. 
* gnu/packages/maths.scm (suitesparse-ccolamd): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-06 12:26:45 +02:00
David Elsing
3fc3b35738 gnu: Add suitesparse-colamd. 
* gnu/packages/maths.scm (suitesparse-colamd): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-06 12:26:45 +02:00
David Elsing
97edef50f4 gnu: Add suitesparse-camd. 
* gnu/packages/maths.scm (suitesparse-camd): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-06 12:26:45 +02:00
David Elsing
913e2dd61f gnu: Add suitesparse-btf. 
* gnu/packages/maths.scm (suitesparse-btf): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-06 12:26:45 +02:00
David Elsing
2eb40f8b39 gnu: Add suitesparse-amd. 
* gnu/packages/maths.scm (suitesparse-amd): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-06 12:26:45 +02:00
David Elsing
a6fc1164c4 gnu: Add suitesparse-config. 
The suitesparse-source variable contains the entire SuiteSparse source code,
which is used for all subpackages.

* gnu/packages/maths.scm (suitesparse-version, suitesparse-source,
suitesparse-config): New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-06 12:26:44 +02:00
David Elsing
4a368c3a8b gnu: suitesparse: Tweak description. 
* gnu/packages/maths.scm (suitesparse)[description]: Mention that all
subpackages are included.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-06 12:26:44 +02:00
Ludovic Courtès
16fd9d6e3d gnu: guix: Update to e863274. 
This includes the ‘guix perform-download’ fix from commit
762fdbdef5.

* gnu/packages/package-management.scm (guix): Update to e863274.
 2023-10-06 12:26:44 +02:00
Lars Rustand
110378934e gnu: Add vendor-reset-linux-module. 
* gnu/packages/linux.scm (vendor-reset-linux-module): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-06 11:52:14 +02:00
Denis 'GNUtoo' Carikli
9d0da4ced3 gnu: matterbridge: Update to 1.26.0 
* gnu/packages/messaging.scm (matterbridge): Update to 1.26.0

Signed-off-by: Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org>
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-06 11:52:13 +02:00
Vinicius Monego
9930aeb0e3 gnu: Add python-mapie. 
* gnu/packages/statistics.scm (python-mapie): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-06 11:52:13 +02:00
Bruno Victal
70c27db33e system: Modify bash skeleton to colorize 'ip' output. 
* gnu/system/shadow.scm (%default-bashrc): Add an alias for 'ip' that enables
output colorization.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-06 11:52:13 +02:00
Ricardo Wurmus
e97e708958 gnu: r-biomvrcns: Patch R constants. 
* gnu/packages/bioconductor.scm (r-biomvrcns)[arguments]: Add phase
'patch-constants.
 2023-10-06 08:55:11 +02:00
Ludovic Courtès
e863274e67 services: hurd-vm: Leave root password uninitialized when offloading. 
Starting with 953c65ffdd, offloading to
the Hurd VM would be enabled by default.  However, ‘root’ had an empty
password so any user on the host could connect to the VM over VNC, log
in as root, and potentially populate the host’s store from there.  This
change fixes that.

* gnu/services/virtualization.scm (operating-system-with-locked-root-account):
New procedure.
(hurd-vm-disk-image)[transform]: Add
‘operating-system-with-locked-root-account’ when offloading.
 2023-10-05 23:14:55 +02:00
Ludovic Courtès
917c17c052 tests: childhurd: Test SSH connection with a non-root user. 
* gnu/tests/virtualization.scm (%childhurd-os): Remove ‘services’ and
add ‘users’ to the GNU/Hurd ‘operating-system’ declaration.
(run-childhurd-test)[run-command-over-ssh]: Log in as “test” instead of
“root”.
 2023-10-05 23:14:55 +02:00
Ludovic Courtès
a0818d0236 services: mcron: Hide ‘mkdir-p’ from (shepherd support). 
This a avoids a Guile warning about the name collision with (guix build
utils).  The warning was introduced by commit
e0e85f2b23.

* gnu/services/mcron.scm (mcron-shepherd-services): Hide ‘mkdir-p’.
 2023-10-05 23:14:55 +02:00
Fabio Natali
c49cc1ac12 gnu: guile-ini: Added missing propagated input ‘guile-lib’. 
Fixes <https://issues.guix.gnu.org/66315>.

* gnu/packages/guile-xyz.scm (guile-ini)[propagated-inputs]: Add
GUILE-LIB.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-05 23:14:55 +02:00
André Batista
be214b56c0 gnu: prosody: Update to 0.12.4. 
* gnu/packages/messaging.scm (prosody): Update to 0.12.4.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-05 23:14:55 +02:00
Artyom V. Poptsov
45fbcc452f gnu: go-ipfs: Update to 0.14.0. 
* gnu/packages/ipfs.scm (go-ipfs): Update to 0.14.0.
  [source]: Change "go-ipfs" to "kubo" in the source link.
  [arguments]: Rename "go-ipfs" to "kubo".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-05 23:14:55 +02:00
Nikolaos Chatzikonstantinou
2467b7d1fb system: bare-bones: Add comments about nss-cert and NTP service. 
TLS errors may be confusing to some users.  Two comments are added: one
comment should help clarify the extra step required for root CA certificates
to be installed, while the other will help users keep their clocks
synchronized, another source of TLS errors due to clock drift.

* gnu/system/examples/bare-bones.tmpl: Add nss-cert and NTP service comments.

Signed-off-by: Nikolaos Chatzikonstantinou <nchatz314@gmail.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-05 23:14:54 +02:00
Ludovic Courtès
97927608cb Revert "system: accounts: Export <user-account>." 
This reverts commit 03795e2ba2.
Fixes <https://issues.guix.gnu.org/66279>.
 2023-10-05 23:14:54 +02:00
B. Wilson
87b3ac13fe gnu: Add apple-bash. 
* gnu/packages/apple.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODELS): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-05 23:14:54 +02:00
Distopico
efab2a25be gnu: rust-trybuild: Update 1.0.19 version hash. 
Fixes <https://issues.guix.gnu.org/66345>.

* gnu/packages/crates-io.scm (rust-trybuild): Update 1.0.19 hash.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-05 23:14:53 +02:00
Arun Isaac
0374640618 gnu: Add cgit-pink. 
* gnu/packages/version-control.scm (cgit-pink): New variable.
 2023-10-05 17:38:33 +01:00
Arun Isaac
db52c06c3d gnu: cgit: Fix cross compilation. 
* gnu/packages/version-control.scm (cgit)[native-inputs]: Move bzip2, gzip and
xz to ...
[inputs]: ... here. Add bash-minimal.
[arguments]: Use cc-for-target.
 2023-10-05 17:38:32 +01:00
Arun Isaac
faad060771 gnu: cgit: Update package style. 
* gnu/packages/version-control.scm (cgit)[arguments]: Rewrite using
G-expressions. Do not return #t from custom phases.
 2023-10-05 17:38:28 +01:00
Mathieu Othacehe
29243a9f39 gnu: python-pynetbox: Update to 7.2.0. 
* gnu/packages/python-web.scm (python-pynetbox): Update to 7.2.0.
 2023-10-05 18:31:11 +02:00
Timotej Lazar
21f3f30141 gnu: Add python-pynetbox. 
* gnu/packages/python-web.scm (python-pynetbox): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-05 17:23:48 +02:00
Sharlatan Hellseher
9917079bd7 gnu: Add WCSTools. 
* gnu/packages/astronomy.scm (wcstools): New variable.
* gnu/packages/patches/wcstools-extend-makefiles.patch: New file.
* gnu/local.mk: Add it.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-10-05 17:07:16 +02:00
Ricardo Wurmus
d37e24827a gnu: r-bayesfactor: Update to 0.9.12-4.5. 
* gnu/packages/statistics.scm (r-bayesfactor): Update to 0.9.12-4.5.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
bba0dc6e5d gnu: r-puniform: Update to 0.2.7. 
* gnu/packages/statistics.scm (r-puniform): Update to 0.2.7.
[propagated-inputs]: Add r-numderiv.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
a7b9a558d5 gnu: r-lubridate: Update to 1.9.3. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.9.3.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
6015f41454 gnu: r-vgam: Update to 1.1-9. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-9.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
f3a73e9ce5 gnu: r-rmarkdown: Update to 2.25. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.25.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
6535a7d047 gnu: r-withr: Update to 2.5.1. 
* gnu/packages/statistics.scm (r-withr): Update to 2.5.1.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
3b9bb9c61e gnu: r-openssl: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-openssl): Update to 2.1.1.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
48dcf15dea gnu: r-dbplyr: Update to 2.3.4. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.3.4.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
d9993b98c6 gnu: r-markdown: Update to 1.9. 
* gnu/packages/statistics.scm (r-markdown): Update to 1.9.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
8f145cafec gnu: r-evaluate: Update to 0.22. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.22.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
a82e566cbc gnu: r-plyr: Update to 1.8.9. 
* gnu/packages/statistics.scm (r-plyr): Update to 1.8.9.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
07bf9f857f gnu: r-matrix: Update to 1.6-1.1. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.6-1.1.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
8b56e8fd32 gnu: r-lattice: Update to 0.21-9. 
* gnu/packages/statistics.scm (r-lattice): Update to 0.21-9.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
93f0029067 gnu: r-varhandle: Update to 2.0.6. 
* gnu/packages/cran.scm (r-varhandle): Update to 2.0.6.
 2023-10-05 15:16:29 +02:00
Ricardo Wurmus
bbf8ac3229 gnu: r-mockery: Update to 0.4.4. 
* gnu/packages/cran.scm (r-mockery): Update to 0.4.4.
 2023-10-05 15:16:29 +02:00