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10272 Commits

Author SHA1 Message Date
Ricardo Wurmus
7b1dccdf45 gnu: r-maptools: Patch use of Calloc and Free. 
* gnu/packages/cran.scm (r-maptools)[arguments]: Add phase 'patch-Calloc.

Change-Id: I13d6f5a5e0c28f17908842b4bdbc5a89aa8c3816
 2025-05-26 17:23:02 +02:00
Ricardo Wurmus
874a95e304 gnu: r-kmsurv: Update to 0.1-6. 
* gnu/packages/cran.scm (r-kmsurv): Update to 0.1-6.

Change-Id: I8ff66d89aed2ad6b238d277d473e110ce4904ca3
 2025-05-22 08:13:15 +02:00
Ricardo Wurmus
f3112de0bf gnu: r-spatstat-random: Update to 3.4-1. 
* gnu/packages/cran.scm (r-spatstat-random): Update to 3.4-1.

Change-Id: I0916a0084cca6ddac056351f4e5248139824119f
 2025-05-22 08:13:15 +02:00
Ricardo Wurmus
cbe8c5be2b gnu: r-spatstat-geom: Update to 3.4-1. 
* gnu/packages/cran.scm (r-spatstat-geom): Update to 3.4-1.

Change-Id: Id1e61c0ba3dc76520b9038055856c13ac131192b
 2025-05-22 08:13:15 +02:00
Ricardo Wurmus
17f96012c2 gnu: r-spatstat-explore: Update to 3.4-3. 
* gnu/packages/cran.scm (r-spatstat-explore): Update to 3.4-3.

Change-Id: Ic8321a1dcd99826ab6579173270849f4e9a4dfc9
 2025-05-22 08:13:15 +02:00
Ricardo Wurmus
9983228bd5 gnu: r-directlabels: Update to 2025.5.20. 
* gnu/packages/cran.scm (r-directlabels): Update to 2025.5.20.
[native-inputs]: Add r-nlme.

Change-Id: I4d847a84e1691ec2df1140c2d194111f07116759
 2025-05-22 08:13:15 +02:00
Ricardo Wurmus
0f6c495755 gnu: r-openmx: Update to 2.22.6. 
* gnu/packages/cran.scm (r-openmx): Update to 2.22.6.
[native-inputs]: Add r-mvtnorm.

Change-Id: If7414b663055844e11516a664e4c4f9e470cd0a7
 2025-05-22 08:13:15 +02:00
Ricardo Wurmus
4cb1369a4c gnu: r-quanteda: Update to 4.3.0. 
* gnu/packages/cran.scm (r-quanteda): Update to 4.3.0.

Change-Id: I09ba491a371708499b9c73bdfc5474ca85aa3ed7
 2025-05-22 08:13:15 +02:00
Ricardo Wurmus
0fae8ee14a gnu: r-isocodes: Update to 2025.05.18. 
* gnu/packages/cran.scm (r-isocodes): Update to 2025.05.18.

Change-Id: I5beab5d033c6bec4c536f408dbd1c3275d13a4d8
 2025-05-22 08:13:15 +02:00
Ricardo Wurmus
abf960c7d5 gnu: r-acss: Update to 0.3-2. 
* gnu/packages/cran.scm (r-acss): Update to 0.3-2.
[native-inputs]: Add r-knitr.

Change-Id: Ia06bd5f5fbf3a4a39d5519d8d5df19c1cb5ae875
 2025-05-22 08:13:14 +02:00
Ricardo Wurmus
f722e4f313 gnu: r-acss-data: Update to 1.2. 
* gnu/packages/cran.scm (r-acss-data): Update to 1.2.

Change-Id: I60afb975b9b65fb6ebb4577f82bc6a20b2313c7a
 2025-05-22 08:13:14 +02:00
Ricardo Wurmus
074ce5cf1b gnu: r-bayestestr: Update to 0.16.0. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.16.0.

Change-Id: Ic4b11613dc994318d8bafdea1e1c6342c27ce9a8
 2025-05-22 08:13:14 +02:00
Ricardo Wurmus
05942887f7 gnu: r-flextable: Update to 0.9.8. 
* gnu/packages/cran.scm (r-flextable): Update to 0.9.8.

Change-Id: I41e8da08de7e1cf0968c19d4dba39b7562f50269
 2025-05-22 08:13:14 +02:00
Ricardo Wurmus
47e29505d8 gnu: r-insight: Update to 1.3.0. 
* gnu/packages/cran.scm (r-insight): Update to 1.3.0.

Change-Id: Ifdc6a668124755921fe6a4a354482269f0153dc0
 2025-05-22 08:13:14 +02:00
Ricardo Wurmus
ce09b79a04 gnu: r-cubature: Update to 2.1.3. 
* gnu/packages/cran.scm (r-cubature): Update to 2.1.3.

Change-Id: I69abb184eae6ecfab27d697a19a48845ed316e76
 2025-05-22 08:13:14 +02:00
Ricardo Wurmus
e548fe3d05 gnu: r-nanonext: Update to 1.6.0. 
* gnu/packages/cran.scm (r-nanonext): Update to 1.6.0.

Change-Id: Iff6e26ab28a94ed415f23e9611e7df8394367ef6
 2025-05-22 08:13:14 +02:00
Ricardo Wurmus
500fc0b838 gnu: r-recipes: Update to 1.3.1. 
* gnu/packages/cran.scm (r-recipes): Update to 1.3.1.

Change-Id: I60f0df7bcf22c77b81883e1d2ae8525853e32285
 2025-05-22 08:13:14 +02:00
Ricardo Wurmus
2c46336cc5 gnu: r-kknn: Update to 1.4.1. 
* gnu/packages/cran.scm (r-kknn): Update to 1.4.1.

Change-Id: I38b0858da47a13eb6d6560c5f37b45fc1ef7aa38
 2025-05-22 08:13:14 +02:00
Ricardo Wurmus
1b6d716171 gnu: r-mapproj: Update to 1.2.12. 
* gnu/packages/cran.scm (r-mapproj): Update to 1.2.12.

Change-Id: I9bb4b6110cb33c09359166ba2d6b58be0c20b77a
 2025-05-22 08:13:13 +02:00
Ricardo Wurmus
b35e8444d6 gnu: r-marginaleffects: Update to 0.26.0. 
* gnu/packages/cran.scm (r-marginaleffects): Update to 0.26.0.

Change-Id: I6d6de80c638b934d2653c7aa758aa9d37b6e74cd
 2025-05-22 08:13:13 +02:00
Ricardo Wurmus
98409aac80 gnu: r-cftime: Update to 1.6.2. 
* gnu/packages/cran.scm (r-cftime): Update to 1.6.2.

Change-Id: I9073641f697d0b277768e81fc1fb2fa1562cb77c
 2025-05-22 08:13:13 +02:00
Ricardo Wurmus
2df2d98fe8 gnu: r-dygraphs: Use minify build system. 
* gnu/packages/cran.scm (r-dygraphs)[arguments]: Reuse minify-build-system
phase.
[native-inputs]: Replace node-uglify-js with esbuild.

Change-Id: If031d3faa25673ee849ca89f1db911aed7cb8b9a
 2025-05-21 15:21:23 +02:00
Ricardo Wurmus
17c34fe73d gnu: r-mlr3learners: Update to 0.11.0. 
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.11.0.

Change-Id: I1f701d3f4ce5408507945e569619c388ab0ffc24
 2025-05-18 11:37:06 +02:00
Ricardo Wurmus
4ed7b5c07e gnu: r-mlr3tuningspaces: Update to 0.6.0. 
* gnu/packages/cran.scm (r-mlr3tuningspaces): Update to 0.6.0.
[propagated-inputs]: Add r-cli.

Change-Id: I64d45df45647b6d56361f04cb00b1555a7ca68e4
 2025-05-18 11:37:06 +02:00
Ricardo Wurmus
cd8f98ff44 gnu: r-doby: Update to 4.6.27. 
* gnu/packages/cran.scm (r-doby): Update to 4.6.27.

Change-Id: I2a37f689bc68efecbee5de3d45a54ad1f1315b7d
 2025-05-18 11:37:06 +02:00
Ricardo Wurmus
4db94b5fcd gnu: r-extremes: Update to 2.2-1. 
* gnu/packages/cran.scm (r-extremes): Update to 2.2-1.

Change-Id: I27ff2b7b048a74feabdb1041a4f2f11d43edfbd2
 2025-05-18 11:37:06 +02:00
Ricardo Wurmus
ba6ec80924 gnu: r-rmumps: Update to 5.2.1-35. 
* gnu/packages/cran.scm (r-rmumps): Update to 5.2.1-35.

Change-Id: I5d2deaac2a4772f6d160b9ff3fe880fad0ca60f0
 2025-05-18 11:37:06 +02:00
Ricardo Wurmus
59017da22f gnu: r-ctrdata: Update to 1.22.2. 
* gnu/packages/cran.scm (r-ctrdata): Update to 1.22.2.

Change-Id: Ied0b69e65c5dd4dd94389295ea49b7a722955d7c
 2025-05-18 11:37:05 +02:00
Ricardo Wurmus
b93b05de6b gnu: r-ggprism: Update to 1.0.6. 
* gnu/packages/cran.scm (r-ggprism): Update to 1.0.6.
[native-inputs]: Add r-tinytest.

Change-Id: Id231b014d958fd45fee60171ff595db0104868d4
 2025-05-18 11:37:05 +02:00
Ricardo Wurmus
780649b410 gnu: r-highs: Update to 1.10.0-2. 
* gnu/packages/cran.scm (r-highs): Update to 1.10.0-2.
[properties]: Record updater-ignored-native-inputs.
[native-inputs]: Remove gfortran.
[arguments]: Remove.

Change-Id: Ia2fb7ce7961266d21a784925ecd64efe93534b69
 2025-05-18 11:37:05 +02:00
Ricardo Wurmus
1835d55872 gnu: r-ggpointdensity: Update to 0.2.0. 
* gnu/packages/cran.scm (r-ggpointdensity): Update to 0.2.0.
[native-inputs]: Add r-testthat.

Change-Id: I64c3a61c27b63f5fcaf6002d3b8b4d87c1022a2e
 2025-05-18 11:37:05 +02:00
Ricardo Wurmus
fa1ae0b0bb gnu: r-spatstat-utils: Update to 3.1-4. 
* gnu/packages/cran.scm (r-spatstat-utils): Update to 3.1-4.

Change-Id: I4ad751a58e96929e69c5e5b936f3082387ef0c54
 2025-05-18 11:37:05 +02:00
Ricardo Wurmus
c850277d73 gnu: r-rsconnect: Update to 1.4.0. 
* gnu/packages/cran.scm (r-rsconnect): Update to 1.4.0.
[propagated-inputs]: Add r-jose and r-rcpptoml.

Change-Id: Ia19bc220ce215c04a9e0675149e405f146451e59
 2025-05-18 11:37:05 +02:00
Ricardo Wurmus
790e292e6d gnu: r-lim: Update to 1.4.7.2. 
* gnu/packages/cran.scm (r-lim): Update to 1.4.7.2.

Change-Id: Iea43b67cc351d9f19b52f050056e43eba703a49d
 2025-05-18 11:37:05 +02:00
Ricardo Wurmus
6f65436f72 gnu: r-xgboost: Update to 1.7.11.1. 
* gnu/packages/cran.scm (r-xgboost): Update to 1.7.11.1.

Change-Id: I007ba1e7908daf2456bd0aedeffaf2c152074803
 2025-05-18 11:37:05 +02:00
Ricardo Wurmus
7a2ac9de62 gnu: r-sf: Update to 1.0-21. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-21.

Change-Id: Ic1102ac173ba282893b24da0ad1e3736b0d45614
 2025-05-18 11:37:05 +02:00
Ricardo Wurmus
2500dd481b gnu: r-precrec: Update to 0.14.5. 
* gnu/packages/cran.scm (r-precrec): Update to 0.14.5.
[native-inputs]: Add r-vdiffr.

Change-Id: I355d0aa78aef125d15297d455bf813a6c0df9db9
 2025-05-18 11:37:05 +02:00
Ricardo Wurmus
6405b6cafd gnu: r-limsolve: Update to 1.5.7.2. 
* gnu/packages/cran.scm (r-limsolve): Update to 1.5.7.2.

Change-Id: I3f1f35d6e693a7b142fb6c4d7ce5664f29e28b6b
 2025-05-18 11:37:04 +02:00
Ricardo Wurmus
75e2d6a8db gnu: r-hmm: Update to 1.0.2. 
* gnu/packages/cran.scm (r-hmm): Update to 1.0.2.

Change-Id: Ia379da8eabec0a6f40209a19fcfb89c56fe7a634
 2025-05-18 11:37:04 +02:00
Ricardo Wurmus
b2c5687f14 gnu: Add r-jose. 
* gnu/packages/cran.scm (r-jose): New variable.

Change-Id: Idadeb9f7bd3e080b6a4a674b6213f2486c522308
 2025-05-18 11:37:04 +02:00
Kyle Andrews
ff50f88935 gnu: Add r-gpg. 
* gnu/packages/cran.scm (r-gpg): New variable.

Change-Id: Ic432345101387e4cd2bd6558e0e43f06c4c6b33d
 2025-05-15 11:10:42 +02:00
Tor-björn Claesson
d1a5056095 gnu: Add r-bigd. 
* gnu/packages/cran.scm (r-bigd): New variable.

Change-Id: I164034f9823f383628fec5361e6ebeff460c43ec
 2025-05-15 10:34:23 +02:00
Ricardo Wurmus
d748e4dda7 gnu: r-rmpfr: Update to 1.1-0. 
* gnu/packages/cran.scm (r-rmpfr): Update to 1.1-0.

Change-Id: Ica69c58287d4be0d35b24d47ca40aa37aa82aca0
 2025-05-15 10:28:02 +02:00
Ricardo Wurmus
1057155993 gnu: r-zip: Update to 2.3.3. 
* gnu/packages/cran.scm (r-zip): Update to 2.3.3.

Change-Id: Ia896cd56d6ee7c5fd9b390d4169f554f1899e71a
 2025-05-15 10:28:02 +02:00
Ricardo Wurmus
b8c1cde50a gnu: r-msigdbr: Update to 24.1.0. 
* gnu/packages/cran.scm (r-msigdbr): Update to 24.1.0.
[arguments]: Disable some tests.
[propagated-inputs]: Add r-curl.

Change-Id: I90c3c0bf9c9842b13e7b95030b6bfec6b5d71099
 2025-05-15 10:28:02 +02:00
Sergey Trofimov
380282f3f5 gnu: packages: Fix broken descriptions. 
A few description mistakenly use @{foo} instead of @code{foo} which
results in broken formatting in guix search.

* gnu/packages/bioinformatics.scm (umi-tools),
* gnu/packages/cran.scm (r-ggside),
* gnu/packages/crates-apple.scm: (rust-commoncrypto-0.2),
* gnu/packages/crates-io.scm: (rust-ndarray-rand-0.15),
* gnu/packages/emacs-xyz.scm (emacs-load-relative, emacs-el-x)
(emacs-helm-org-ql, emacs-consult-lsp),
* gnu/packages/golang-xyz.scm (go-github-com-songmu-gitconfig),
* gnu/packages/haskell-xyz.scm (ghc-text-short, ghc-validation),
* gnu/packages/image.scm (imgp),
* gnu/packages/perl-check.scm (perl-test-file-contents),
* gnu/packages/perl-web.scm (perl-uri-db),
* gnu/packages/perl.scm (perl-clipboard, perl-module-refresh),
* gnu/packages/python-xyz.scm (python-ddlparse, python-black-macchiato)
(python-pysendfile),
* gnu/packages/qt.scm (qt5compat),
* gnu/packages/ruby.scm (ruby-ruby-engine, ruby-httpclient),
* gnu/packages/sagemath.scm (python-memory-allocator),
* gnu/packages/spreadsheet.scm (sc-im),
* gnu/packages/time.scm (python-pendulum):
[description]: Fix malformed macros.

Change-Id: I3ed755a54aecf40bf0c5c982f9e70b7cd3689de7
Signed-off-by: Greg Hogan <code@greghogan.com>
 2025-05-13 16:35:45 +00:00
Ricardo Wurmus
ee4f2236e0 gnu: Add r-bigstatsr. 
* gnu/packages/cran.scm (r-bigstatsr): New variable.

Change-Id: I5e4bc7f9f6567c7cf93cc12bb3d33b46c00646aa
 2025-05-13 17:01:01 +02:00
Ricardo Wurmus
9e948013cd gnu: Add r-bigparallelr. 
* gnu/packages/cran.scm (r-bigparallelr): New variable.

Change-Id: I3667c9ae8dce38b8501e8427da96091be0ce7162
 2025-05-13 17:01:01 +02:00
Ricardo Wurmus
c43835f485 gnu: Add r-bigreadr. 
* gnu/packages/cran.scm (r-bigreadr): New variable.

Change-Id: Ie59f4a1fbc469febedcd584cacac3ddd8d094c26
 2025-05-13 17:01:01 +02:00
Ricardo Wurmus
5fde1bc527 gnu: Add r-psychometric. 
* gnu/packages/cran.scm (r-psychometric): New variable.

Change-Id: Ifcca90bd90a4f7b8207692e01b535621e548a87e
 2025-05-13 17:01:01 +02:00