tribes/guix
1
0
Fork 1
mirror of https://git.savannah.gnu.org/git/guix.git synced 2026-04-30 22:35:57 +02:00
Code Activity
154,970 Commits 75 Branches 40 Tags
eff080ef1635ab68073b200cfeaf57ea2e679091
Commit Graph

288 Commits

Author SHA1 Message Date
Felix Gruber f76ffc3ea6 gnu: Add python-meshzoo. 
* gnu/packages/python-science.scm (python-meshzoo): New variable.

Change-Id: Ia41d62ebd6c4cb3c22ebe0668c36279a9ca191ac
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-12-04 22:26:37 +01:00
Troy Figiel 416ae9ad89 gnu: Add python-tdda. 
* gnu/packages/python-science.scm (python-tdda): New variable.

Change-Id: I456aa236b3348e5b990289d8a381c2d5276a12f1
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-11-15 18:29:38 +01:00
Vinicius Monego 43d9fa0802 gnu: python-pytensor: Update to 2.17.3. 
* gnu/packages/python-science.scm (python-pytensor): Update to 2.17.3.

Change-Id: I2843aca1df4d43883bf643e6e363bd3700202c45
 2023-11-03 19:25:36 -03:00
Vinicius Monego a7d56852e3 gnu: Add python-salib. 
* gnu/packages/python-science.scm (python-salib): New variable.
 2023-11-03 19:25:35 -03:00
Paul A. Patience d07e75a4ce gnu: python-trimesh: Update to 3.23.5. 
* gnu/packages/python-science.scm (python-trimesh): Update to 3.23.5.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-10-17 10:26:55 +01:00
Paul A. Patience 4aa6a924b2 gnu: python-pyvista: Update to 0.42.3. 
* gnu/packages/python-science.scm (python-pyvista): Update to 0.42.3.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-10-17 10:26:23 +01:00
Nicolas Graves e9c0bb0341 gnu: python-distributed: Disable failing tests. 
* gnu/packages/python-science.scm (python-distributed): Disable failing tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-08 23:43:50 +02:00
Vinicius Monego 04b31ce1f8 gnu: Add python-numpoly. 
* gnu/packages/python-science.scm (python-numpoly): New variable.
 2023-09-30 10:37:47 -03:00
Vinicius Monego 645aeaf52d gnu: python-pytensor: Update to 2.14.2. 
* gnu/packages/python-science.scm (python-pytensor): Update to 2.14.2.
[native-inputs]: Add python-pytest-mock.
 2023-08-05 18:40:01 -03:00
Vinicius Monego 746416b44a gnu: Add python-scikit-fem. 
* gnu/packages/python-science.scm (python-scikit-fem): New variable.
 2023-07-29 14:25:03 -03:00
Ricardo Wurmus 01412c6c6a gnu: python-distributed: Update to 2023.7.0. 
* gnu/packages/python-science.scm (python-distributed): Update to 2023.7.0.
 2023-07-15 13:36:02 +02:00
Ricardo Wurmus ea81a0417a gnu: Add python-plotnine. 
* gnu/packages/python-science.scm (python-plotnine): New variable.
 2023-07-13 22:29:24 +02:00
Arun Isaac d4e9ad2d42 gnu: python-pandas-flavor: Update to 0.5.0. 
* gnu/packages/python-science.scm (python-pandas-flavor): Update to 0.5.0.
[propagated-inputs]: Add python-lazy-loader and python-packaging.
[home-page]: Update.
 2023-06-29 17:01:56 +01:00
Ricardo Wurmus 2a7ca17068 gnu: python-distributed: Disable timeout test. 
* gnu/packages/python-science.scm (python-distributed)[arguments]: Disable
test_nanny_timeout, because it times out.
 2023-06-29 12:01:22 +02:00
Paul A. Patience 5cf9880dd4 gnu: python-trimesh: Update to 3.22.1. 
* gnu/packages/python-science.scm (python-trimesh): Update to 3.22.1.
[arguments]<#:phases>: Update path in 'fix-build' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-06-25 23:46:03 +02:00
Vinicius Monego cbcab52fd1 gnu: Add python-pytensor. 
* gnu/packages/python-science.scm (python-pytensor): New variable.
 2023-06-25 10:48:05 -03:00
Vinicius Monego a38f5a71ad gnu: Add python-xarray-einstats. 
* gnu/packages/python-science.scm (python-xarray-einstats): New variable.
 2023-06-25 10:43:22 -03:00
Vinicius Monego b08a1f3ce1 gnu: python-xarray: Update to 2023.6.0. 
* gnu/packages/python-science.scm (python-xarray): Update to 2023.6.0.
[build-system]: Switch to pyproject-build-system.
[arguments]: Do not override the check phase.
 2023-06-25 10:43:22 -03:00
Vinicius Monego 6bc2fbc14c gnu: Add python-einops. 
* gnu/packages/python-science.scm (python-einops): New variable.
 2023-06-25 10:43:22 -03:00
Paul A. Patience 24fc0d506a gnu: python-pyvista: Update to 0.39.1. 
* gnu/packages/python-science.scm (python-pyvista): Update to 0.39.1.
[propagated-inputs]: Add python-pooch, remove python-appdirs.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-06-20 22:16:14 +01:00
Ricardo Wurmus 4557c83a7d gnu: python-distributed: Update to 2023.4.1. 
* gnu/packages/python-science.scm (python-distributed): Update to 2023.4.1.
[source]: Remove snippet.
[arguments]: Update build phase 'versioneer; restore 'sanity-check phase;
simplify custom 'check phase; add 'fix-pytest-config phase; use #:test-flags.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-importlib-metadata.
 2023-05-11 15:59:22 +02:00
Ricardo Wurmus 96c51a9dbf gnu: python-scikit-optimize: Fix build with newer numpy and sklearn. 
* gnu/packages/patches/python-scikit-optimize-1148.patch,
gnu/packages/patches/python-scikit-optimize-1150.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/python-science.scm (python-scikit-optimize)[source]: Fetch with
git and apply patches.
 2023-05-10 19:27:07 +02:00
Efraim Flashner 12c529c071 gnu: python-bottleneck: Honor #:tests? flag. 
* gnu/packages/python-science.scm (python-bottleneck)[arguments]: Adjust
custom 'check phase to honor the #:tests? flag.
 2023-05-08 12:42:10 +03:00
Efraim Flashner 4a23812c7c gnu: python-bottleneck: Update to 1.3.7. 
* gnu/packages/python-science.scm (python-bottleneck): Update to 1.3.7.
 2023-05-08 12:42:09 +03:00
Ricardo Wurmus 5409ae48af gnu: python-distributed: Fix build. 
* gnu/packages/python-science.scm (python-distributed)[build-system]: Use
pyproject-build-system.
[arguments]: Hide deprecation warnings from tornado, because they break almost
all tests; disable three more tests.
 2023-04-26 11:17:41 +02:00
Maxim Cournoyer 3bacd3c76a Merge branch 'master' into core-updates. 
Conflicts:
	gnu/local.mk
	gnu/packages/build-tools.scm
	gnu/packages/certs.scm
	gnu/packages/check.scm
	gnu/packages/compression.scm
	gnu/packages/cups.scm
	gnu/packages/fontutils.scm
	gnu/packages/gnuzilla.scm
	gnu/packages/guile.scm
	gnu/packages/ibus.scm
	gnu/packages/image-processing.scm
	gnu/packages/linux.scm
	gnu/packages/music.scm
	gnu/packages/nss.scm
	gnu/packages/pdf.scm
	gnu/packages/python-xyz.scm
	gnu/packages/qt.scm
	gnu/packages/ruby.scm
	gnu/packages/shells.scm
	gnu/packages/tex.scm
	gnu/packages/video.scm
	gnu/packages/vulkan.scm
	gnu/packages/web.scm
	gnu/packages/webkit.scm
	gnu/packages/wm.scm
 2023-04-14 17:15:08 -04:00
Maxim Cournoyer a3bfb86738 gnu: python-scipy: Update to 1.10.1. 
* gnu/packages/python-science.scm (python-scipy): Update to 1.10.1.
[build-system]: Use pyproject-build-system.
[arguments]: Add #:build-backend argument.
Remove loosen-requirements, build and install phases.
[native-inputs]: Remove python-pypa-build.
 2023-04-11 17:22:35 -04:00
Ricardo Wurmus 896982f357 gnu: python-scikit-allel: Use pyproject-build-system. 
* gnu/packages/python-science.scm (python-scikit-allel): Move up to create
alphabetic order.
[build-system]: Use pyproject-build-system.
[arguments]: Provide test flags instead of overriding 'check phase; split out
build step into new 'build-ext phase.  Disable roh_mhmm tests.
 2023-03-24 18:23:01 +01:00
Ricardo Wurmus 6d132c5ebf gnu: Add python-scikit-optimize. 
* gnu/packages/python-science.scm (python-scikit-optimize): New variable.
 2023-03-24 18:03:30 +01:00
Lars-Dominik Braun 34f684371e gnu: Add python-libneuroml. 
* gnu/packages/python-science.scm (python-libneuroml): New variable.
 2023-03-21 13:58:42 +01:00
Lars-Dominik Braun 9f882daf11 gnu: Add python-pylems. 
* gnu/packages/python-science.scm (python-pylems): New variable.
 2023-03-21 13:56:47 +01:00
Antero Mejr e24b9b42bc gnu: Add python-pydicom. 
* gnu/packages/python-science.scm (python-pydicom): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-08 16:11:45 +01:00
Sharlatan Hellseher 7f380a2e26 gnu: python-sgp4: Move to astronomy. 
* gnu/packages/astronomy.scm: (python-sgp4): Move here from python-science.scm.
  [description]: Expand description, annotate acronyms, add link to CelesTrak.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-12-05 22:22:20 +01:00
Sharlatan Hellseher 6468d9c131 gnu: python-sgp4: Update to 2.21. 
The latest version passes build on aarch64-linux system.

* gnu/packages/python-science.scm (python-sgp4): Update to 2.21.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-12-05 22:22:20 +01:00
Navid Afkhami 9ddc4e5b03 gnu: python-msgpack-numpy: Update to 0.4.8. 
* gnu/packages/python-science.scm (python-msgpack-numpy): Update to 0.4.8.
 2022-12-02 15:04:15 +01:00
Navid Afkhami ba8679fb24 gnu: Add python-tspex. 
* gnu/packages/python-science.scm (python-tspex): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2022-11-11 12:12:04 +01:00
Ricardo Wurmus b19c12c2d7 gnu: Add python-pyts. 
* gnu/packages/python-science.scm (python-pyts): New variable.
 2022-11-04 19:53:31 +01:00
jgart 70cac2829f gnu: Add python-simple-pid. 
* gnu/packages/python-science.scm (python-simple-pid): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-10-18 14:41:10 +02:00
Marius Bakke f66067febc Merge branch 'master' into staging 2022-09-29 07:26:37 +02:00
Guillaume Le Vaillant 05c13b3149 gnu: Add python-simplespectral. 
* gnu/packages/python-science.scm (python-simplespectral): New variable.
 2022-09-28 11:31:49 +02:00
Maxim Cournoyer 3c6e220d81 Merge branch 'master' into staging. 
With resolved conflicts in:
	gnu/local.mk
	gnu/packages/crates-io.scm
 2022-09-27 14:27:28 -04:00
Ricardo Wurmus ab6931483b gnu: Add python-vaex-core. 
* gnu/packages/python-science.scm (python-vaex-core): New variable.
 2022-09-25 21:24:34 +02:00
Marius Bakke 2266ec5eb1 gnu: python-cython: Remove duplicate version. 
* gnu/packages/python-xyz.scm (python-cython-0.29.32): Remove variable.
* gnu/packages/python-science.scm (python-pandas)[native-inputs]: Change from
PYTHON-CYTHON-0.29.32 to PYTHON-CYTHON.
 2022-09-18 16:26:18 +02:00
Marius Bakke ce3b51a4c6 gnu: python-pandas: Update to 1.4.4. 
* gnu/packages/python-science.scm (python-pandas): Update to 1.4.4.
[native-inputs]: Change from PYTHON-CYTHON to PYTHON-CYTHON-0.29.32.
 2022-09-18 16:18:36 +02:00
Marius Bakke 888dfc8eb6 gnu: python-scipy: Update to 1.9.1. 
* gnu/packages/python-science.scm (python-scipy): Update to 1.9.1.
[source]: Switch to GIT-FETCH.
[outputs]: Remove.
[arguments]: Don't disable Pythran.  Don't configure OpenBLAS which is now
discovered by pkg-config.  Do a "manual" PEP 517 style build.  Make
install-doc phase conditional on the presence of Sphinx.  Simplify tests.
[propagated-inputs]: Add PYTHON-PYTHRAN.
[native-inputs]: Remove PERL, WHICH, PYTHON-NUMPYDOC,
PYTHON-PYDATA-SPHINX-THEME, PYTHON-SPHINX, and PYTHON-SPHINX-PANELS.  Add
GCC, PKG-CONFIG, PYTHON-PYPA-BUILD and PYTHON-MESON.
 2022-09-16 18:42:21 +02:00
Marius Bakke 8bd7cd34bf gnu: python-pingouin: Don't pin scikit-learn version. 
* gnu/packages/python-science.scm (python-pingouin)[arguments]: Add phase.
 2022-09-14 21:08:34 +02:00
Marius Bakke e3ed1d09f9 gnu: python-pingouin: Update to 0.5.2. 
* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.2.
[arguments]: Adjust outdated substitution.
 2022-09-11 23:41:51 +02:00
Christopher Baines ad1d3f98b1 gnu: Add comments to the bottom of a few package modules. 
This will hopefully discourage patches which add new packages to the bottom of
files, as this increases the likelihood of conflicts when applying patches.

If there are more specific ways that packages should be arranged in specific
modules, this message can be updated accordingly.

* gnu/packages/bioconductor.scm: Add comment discouraging adding packages to
the bottom of the file.
* gnu/packages/bioinformatics.scm: ditto.
* gnu/packages/cran.scm: ditto.
* gnu/packages/crates-io.scm: ditto.
* gnu/packages/emacs-xyz.scm: ditto.
* gnu/packages/golang.scm: ditto.
* gnu/packages/guile-xyz.scm: ditto.
* gnu/packages/haskell-xyz.scm: ditto.
* gnu/packages/java.scm: ditto.
* gnu/packages/julia-xyz.scm: ditto.
* gnu/packages/lisp-xyz.scm: ditto.
* gnu/packages/ocaml.scm: ditto.
* gnu/packages/perl.scm: ditto.
* gnu/packages/python-science.scm: ditto.
* gnu/packages/python-xyz.scm: ditto.
* gnu/packages/ruby.scm: ditto.
* gnu/packages/tex.scm: ditto.
 2022-09-10 10:45:27 +01:00
Paul A. Patience 29491482a1 gnu: python-pyvista: Update to 0.36.1. 
* gnu/packages/python-science.scm (python-pyvista): Update to 0.36.1.

Signed-off-by: Marius Bakke <marius@gnu.org>
 2022-09-07 22:02:40 +02:00
Paul A. Patience 7e13054373 gnu: python-pyvista: Update to 0.35.2. 
* gnu/packages/python-science.scm (python-pyvista): Update to 0.35.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-08-02 20:59:15 +03:00