tribes/guix
1
0
Fork 0
mirror of https://git.savannah.gnu.org/git/guix.git synced 2026-04-07 13:40:36 +02:00
Code Activity
176,094 Commits 73 Branches 40 Tags
f114fbaf5fa232d9b9aeff372ec53bfb243fc643
Commit Graph

163431 Commits

Author SHA1 Message Date
Ricardo Wurmus
f114fbaf5f gnu: r-gwascat: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.42.0.
[propagated-inputs]: Add r-seqinfo.

Change-Id: I3be0520167579fadee07647ae232cf42a9ff63cc
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
7201a66cb3 gnu: r-gviz: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.54.0.
[propagated-inputs]: Add r-seqinfo.

Change-Id: I43be1c05a4112bfb7957ae9bad6ca76aa11a0f9e
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
03fb8b030f gnu: r-ggbio: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.58.0.
[propagated-inputs]: Remove r-ggally; add r-seqinfo.

Change-Id: If8b4eb53b8c3568cc225e4ce73af41c0b0217f20
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
ccf77ddf07 gnu: r-catalyst: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.34.1.

Change-Id: I8f9e7fb3c0a664ad8f9a306455df1ab76fdf7a91
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
b41b9d1c4d gnu: r-msmstests: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.48.0.

Change-Id: I4a83db3c7580880db4c6e2539959ffb48e0fe32c
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
9e718a65bd gnu: r-msmseda: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.48.0.

Change-Id: Id4195b088b2e858a2c576a0f0f9f17790437d5d8
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
f3839a257e gnu: r-biocio: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.20.0.

Change-Id: I568d3175a0439437b32c5066f1c61e3b1887b800
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
0e5fa6a0e2 gnu: r-msfeatures: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.18.0.

Change-Id: I08cd3b7fa3b34352b216e8abdd74d6fd7b34f14f
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
40225786c4 gnu: r-delayedmatrixstats: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.32.0.

Change-Id: Ia8d2217e009733c1ab08b84eed2ffab757ebf886
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
987e2d7c07 gnu: r-spatialexperiment: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-spatialexperiment): Update to 1.20.0.

Change-Id: I6dd4993bd709ff22146a2e95abe7c81ce54b51ed
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
a8a0853e31 gnu: r-sparsematrixstats: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.22.0.

Change-Id: Idef952d222ab5ba5a95927bb64b8866cd5554e8f
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
21efa1a295 gnu: r-sparsearray: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.10.2.

Change-Id: Ib8d9d63e0e85c175d45e4ab5a0887fd67123d3f4
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
16f00216ad gnu: r-scran: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.38.0.

Change-Id: I6104555f0db943cadd291c01cceeab947157b17b
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
573de09389 gnu: r-scater: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-scater): Update to 1.38.0.

Change-Id: I23b3c542fd7cf4588a23a61f62744b5bb7a89e87
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
8e5e4c4a7b gnu: r-scuttle: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.20.0.

Change-Id: Ic3e84c30a18a71a375c5920b72ea9a88b3cc71c9
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
c2047053c9 gnu: r-singlecellexperiment: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.32.0.

Change-Id: I71e8923bd8f01a0a360a830c38be9bb02702d579
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
7904e9b728 gnu: r-chromvar: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.32.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I429812ba4c5f5a378d23fe4cc554061c4bb2996c
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
cb6b7ca64a gnu: r-motifmatchr: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.32.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: If848b711ba7d8807d54a7b2ba9d5adb79a304515
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
f51829c2d1 gnu: r-maftools: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.26.0.
[propagated-inputs]: Remove r-zlibbioc.

Change-Id: I742a80319ff9be646f11cb34220e9b64b1358beb
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
958dfc42db gnu: r-tfbstools: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.48.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I2857b5e48dd143175ae44db7632e3ef24916bd96
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
3d91f6a72d gnu: r-cner: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-cner): Update to 1.46.0.
[propagated-inputs]: Add r-seqinfo.

Change-Id: I4682a492df0fe2fb34d2672db7d183f61713602e
 2025-11-29 12:21:24 +01:00
Ricardo Wurmus
a6afc4a575 gnu: r-beaddatapackr: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-beaddatapackr): Update to 1.62.0.

Change-Id: Id6bc45885bfe0f30039ef2c2fff6278ed3a7dad3
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
7443c565ff gnu: r-beachmat-hdf5: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-beachmat-hdf5): Update to 1.8.0.

Change-Id: Ic9375c1244d64717f64f2ed186245f7b47131f2a
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
922e9334c1 gnu: r-beachmat: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.26.0.

Change-Id: If898ce7a8949bd67762042e9bfad464497e407b1
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
1797aba70d gnu: r-rhdf5lib: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.32.0.

Change-Id: I104b0ef447b9eb5e370e9eba52850bdbfd9a2b12
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
2dfd0bec3e gnu: r-hdf5array: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.38.0.

Change-Id: I467372065960b1519097003c3b038e053eaff9e1
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
97e237bcf7 gnu: r-hitc: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.54.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I1adb1b1a33ca6b815aeefb5f7fb7d8b2774f5cde
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
9a3212754b gnu: r-h5mread: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-h5mread): Update to 1.2.0.

Change-Id: I70925841ea2f1a5a1f73b53dda5f0dcc948b990e
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
528e1f19ba gnu: r-fithic: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.36.0.

Change-Id: I97f91ffeb67bd30b491fc074a4febc0811bbe6b2
 2025-11-29 12:21:23 +01:00
Ricardo Wurmus
a6a2a8a344 gnu: r-fishpond: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.16.0.

Change-Id: I72ecd51878bd5c397e827ac56684513d4f413b0a
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
4c895c454c gnu: r-rgraphviz: Update to 2.54.0. 
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.54.0.

Change-Id: Id136345141264741b662adf043d6afb4e3abcf85
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
87dd8093e2 gnu: r-s4vectors: Update to 0.48.0. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.48.0.
[native-inputs]: Remove r-matrix.

Change-Id: I1183f571248c326677fc49c19eba880aa824d6e7
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
2f81d29fe2 gnu: r-s4arrays: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.10.0.
[propagated-inputs]: Remove r-crayon.

Change-Id: Id59727f851196c3130b589a70a9ef461fca2d631
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
54ef097071 gnu: r-preprocesscore: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.72.0.

Change-Id: I8b11e9752d440430a7c5b150c8655933d15bab28
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
eae44928da gnu: r-icens: Update to 1.82.0. 
* gnu/packages/bioconductor.scm (r-icens): Update to 1.82.0.

Change-Id: I3a17f45278cd403963643232bdd77f939093f28c
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
8a38952f0b gnu: r-m3c: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.32.0.

Change-Id: Ic4fa98380ab6b0b2a6069a18d23a8a78fd385160
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
875edbbcf7 gnu: r-rgreat: Update to 2.12.1. 
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.12.1.

Change-Id: I4466a870b28c7bb925cb1ec878ff867658507c76
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
95a5e84c38 gnu: r-biodist: Update to 1.82.0. 
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.82.0.

Change-Id: I6db0db90d09d264280a48658ce83e1d8cf4a7b86
 2025-11-29 12:21:22 +01:00
Ricardo Wurmus
87a11d69c6 gnu: r-biocworkflowtools: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.36.0.

Change-Id: I0b8bbffc7b7e83738ae702072ec7162d731a7953
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
21be32b521 gnu: r-biocset: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.24.0.

Change-Id: Id95bafe016b38f17cf06a5cb59a2fc34c2048451
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
e949a69e10 gnu: r-biocpkgtools: Update to 1.27.12. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.27.12.

Change-Id: Ifd091a7c6c4b3a52442510e8ab6018f4d7f6681e
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
e8a1a26e27 gnu: r-biocor: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.34.0.

Change-Id: Id15823203a50706ca3a3aaf19e891957f846815a
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
6b7057d56e gnu: r-multiassayexperiment: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.36.1.
[propagated-inputs]: Add r-matrixgenerics.
[native-inputs]: Remove r-r-rsp.

Change-Id: Icd702eb14ba39ea27f24214afd5410f6688faf44
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
5aee5423cb gnu: r-grohmm: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.44.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I0818c535258c30592b18be2e094384bdef3210b6
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
5d9d7a3164 gnu: r-experimenthubdata: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-experimenthubdata): Update to 1.36.0.

Change-Id: I6d1dfb0bbddcaa40e313b32327828f270f88459d
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
9c151c02fb gnu: r-experimenthub: Update to 3.0.0. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 3.0.0.

Change-Id: Ia84690cbbc068c9d4ce7342bf7a7278b96776be2
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
4869ec092a gnu: r-biocviews: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.78.0.

Change-Id: I5ac36df894053744c5bb0f58551603af8bb312fa
 2025-11-29 12:21:21 +01:00
Ricardo Wurmus
bc12f737c6 gnu: r-biocstyle: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.38.0.

Change-Id: I9526db3923a57ea8e0727c4a179544d0ab257f7c
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
1342508c1a gnu: r-biocgraph: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.72.0.

Change-Id: I92d09fcf4b0742fe49677e1b86757232c39474d9
 2025-11-29 12:21:20 +01:00
Ricardo Wurmus
97016e98b6 gnu: r-bioccheck: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.46.0.

Change-Id: If7b32af126584b7cedfe0f963760f4748c9742c1
 2025-11-29 12:21:20 +01:00