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f659e5e379dc3ec43be27a8e3169fe2ed197bb93
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29663 Commits

Author SHA1 Message Date
Marius Bakke
f659e5e379 gnu: python-waf: Update to 2.0.11. 
* gnu/packages/python.scm (python-waf): Update to 2.0.11.
 2018-09-11 13:43:03 +02:00
Marius Bakke
242f2711bd gnu: python-pyzmq: Update to 17.1.2. 
* gnu/packages/python.scm (python-pyzmq): Update to 17.1.2.
 2018-09-10 20:38:48 +02:00
Marius Bakke
b8d165b18a gnu: python-traitlets: Update to 4.3.2. 
* gnu/packages/python.scm (python-traitlets): Update to 4.3.2.
[native-inputs]: Remove PYTHON-NOSE and PYTHON-MOCK.  Add PYTHON-PYTEST.
[arguments]: Adjust check phase accordingly.
[properties]: New field.
(python2-traitlets)[propagated-inputs]: Add PYTHON2-ENUM34.
 2018-09-10 20:38:48 +02:00
Marius Bakke
9fc445b1a5 gnu: python-pexpect: Update to 4.6.0. 
* gnu/packages/python.scm (python-pexpect): Update to 4.6.0.
 2018-09-10 20:38:48 +02:00
Marius Bakke
f2d4944086 gnu: guile-xcb: Install compiled files to "lib" instead of "share". 
This follows up commit b03f270e3d which removes
the previous install location from Guiles search path.

* gnu/packages/guile-wm.scm (guile-xcb)[arguments]: Amend #:configure-flags.
 2018-09-10 14:49:46 +02:00
Marius Bakke
4d19a14e77 gnu: python-llfuse: Update to 1.3.5. 
* gnu/packages/python.scm (python-llfuse): Update to 1.3.5.
 2018-09-10 14:29:40 +02:00
Marius Bakke
073705e725 gnu: python2-contextlib2: Use 'invoke' instead of 'system*'. 
* gnu/packages/python.scm (python2-contextlib2)[arguments]: Use INVOKE.
 2018-09-10 14:28:42 +02:00
Marius Bakke
d06940882d gnu: python2-contextlib2: Update to 0.5.5. 
* gnu/packages/python.scm (python2-contextlib2): Update to 0.5.5.
[native-inputs]: Add PYTHON2-UNITTEST2.
 2018-09-10 14:25:25 +02:00
Marius Bakke
d4c04e509b gnu: Remove python-contextlib2. 
This package is part of the Python standard library since version 3.2.

* gnu/packages/python.scm (python-contextlib2): Rename to ...
(python2-contextlib2): ... this.  Remove previous incarnation.
[arguments]: Set #:python.
 2018-09-10 14:24:34 +02:00
Marius Bakke
e5eef32445 gnu: perl-module-runtime: Update to 0.016. 
* gnu/packages/perl.scm (perl-module-runtime): Update to 0.016.
 2018-09-10 14:13:36 +02:00
Marius Bakke
02107081da gnu: double-conversion: Update to 3.1.0. 
* gnu/packages/maths.scm (double-conversion): Update to 3.1.0.
 2018-09-10 01:41:29 +02:00
Marius Bakke
2bdc73fb26 gnu: double-conversion: Don't use unstable tarball. 
* gnu/packages/maths.scm (double-conversion)[source]: Use GIT-FETCH.
 2018-09-10 01:41:29 +02:00
Marius Bakke
68a08dfbe5 gnu: libgd: Incorporate grafted changes. 
* gnu/packages/gd.scm (gd)[replacement]: Remove field.
[source](patches): Add "gd-CVE-2018-5711.patch" and
"gd-CVE-2018-1000222.patch".
(gd/fixed): Remove variable.
* gnu/packages/php.scm (gd-for-php): Remove variable.
(php)[inputs]: Change GD-FOR-PHP to GD.
 2018-09-10 01:39:01 +02:00
Marius Bakke
fe79ce3b1f Merge branch 'master' into core-updates 2018-09-10 01:37:32 +02:00
Marius Bakke
fb94354a69 gnu: jbig2dec: Remove graft for 0.15. 
* gnu/packages/image.scm (jbig2dec): Update to 0.15.
[source]: Reindent.
(jbig2dec-0.15): Remove variable.
 2018-09-10 01:00:26 +02:00
Marius Bakke
18784d8f11 gnu: OpenSSL: Remove obsolete workaround. 
* gnu/packages/tls.scm (openssl)[arguments]: Remove workaround that is not
needed for GCC version 5.3 and later.
 2018-09-10 00:54:03 +02:00
Leo Famulari
d4bd2453ec gnu: certbot: Update to 0.27.1. 
* gnu/packages/tls.scm (python-acme): Update to 0.27.1.
[arguments]: Use invoke.
(certbot): Update to 0.27.1.
[native-inputs]: Use python-sphinx-1.6.
 2018-09-09 18:52:04 -04:00
Leo Famulari
ced98c7e89 gnu: libgd: Fix CVE-2018-{5711,1000222}. 
* gnu/packages/patches/gd-CVE-2018-1000222.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd/fixed): New variable.
* gnu/packages/php.scm (gd-for-php)[source]: Use 'gd-CVE-2018-1000222.patch'.
 2018-09-09 18:13:19 -04:00
Ricardo Wurmus
45350539aa gnu: r-chron: Update to 2.3-53. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-53.
 2018-09-09 22:26:02 +02:00
Ricardo Wurmus
ab50580a9d gnu: r-annotationhub: Update to 2.12.1. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.12.1.
 2018-09-09 22:26:02 +02:00
Ricardo Wurmus
35c076e619 gnu: r-chippeakanno: Update to 3.14.2. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.2.
 2018-09-09 22:26:02 +02:00
Roel Janssen
c36d972531 gnu: Update texmaker to 5.0.2. 
* gnu/packages/tex.scm (texmaker): Update to 5.0.2.
 2018-09-09 21:59:08 +02:00
Marius Bakke
4333d48a82 gnu: mariadb: Move unbundle substitutions to source snippet. 
* gnu/packages/databases.scm (mariadb)[source](snippet): Add two substitutions
from ...
[arguments]: The 'unbundle' phase here.  Rename to 'fix-pcre-detection.
 2018-09-09 17:59:37 +02:00
Marius Bakke
1d957c79b6 gnu: mariadb: Update to 10.1.36. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.36.
[arguments]: Disable one new test.
 2018-09-09 17:59:36 +02:00
Marius Bakke
5e53722249 gnu: jbig2dec: Don't build libjbig2dec.a. 
* gnu/packages/image.scm (jbig2dec)[arguments]: New field.
 2018-09-09 17:59:36 +02:00
Marius Bakke
de781c05e7 gnu: util-linux: Remove static library reference from '.la' files. 
* gnu/packages/linux.scm (util-linux)[arguments]: Substitute all '.la' files.
 2018-09-09 17:59:36 +02:00
Marius Bakke
334bd08c42 gnu: cmake: Update to 3.12.2. 
* gnu/packages/cmake.scm (cmake): Update to 3.12.2.
 2018-09-09 17:59:36 +02:00
Marius Bakke
a34ce3308e gnu: gdk-pixbuf: Update to 2.38.0. 
* gnu/packages/gtk.scm (gdk-pixbuf): Update to 2.38.0.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[arguments]: Don't explicitly enable x11 in #:configure-flags.  Prevent tests
from getting installed.  Adjust test substitutions.  Add phase to fix install.
[native-inputs]: Add GETTEXT-MINIMAL.
(gdk-pixbuf+svg)[arguments]: Adjust accordingly.
 2018-09-09 17:59:36 +02:00
Marius Bakke
7b1ad8b1d9 gnu: gtk+: Update to 3.24.0. 
* gnu/packages/gtk.scm (gtk+): Update to 3.24.0.
 2018-09-09 17:59:36 +02:00
Marius Bakke
2246c19218 gnu: mesa: Update to 18.1.8. 
* gnu/packages/gl.scm (mesa): Update to 18.1.8.
 2018-09-09 17:59:36 +02:00
Marius Bakke
589aca1c18 gnu: Python: Delete broken test. 
* gnu/packages/python.scm (python-3.7)[source](snippet): Delete test which
may crash some systems.
 2018-09-09 17:59:36 +02:00
Marius Bakke
9adaf1f408 gnu: OpenBLAS: Update to 0.3.3. 
* gnu/packages/maths.scm (openblas): Update to 0.3.3.
 2018-09-09 17:59:35 +02:00
Marius Bakke
9bb8b563a8 gnu: meson: Update to 0.47.2. 
* gnu/packages/build-tools.scm (meson): Update to 0.47.2.
 2018-09-09 17:59:35 +02:00
Marius Bakke
5d948c0c5d gnu: python-hypothesis: Update to 3.70.3. 
* gnu/packages/check.scm (python-hypothesis): Update to 3.70.3.
 2018-09-09 17:59:35 +02:00
Marius Bakke
ad8ae693c8 gnu: python-pytest: Update to 3.8.0. 
* gnu/packages/check.scm (python-pytest): Update to 3.8.0.
 2018-09-09 17:59:35 +02:00
Marius Bakke
529c36225a gnu: fontconfig: Update to 2.13.1. 
* gnu/packages/fontutils.scm (fontconfig): Update to 2.13.1.
 2018-09-09 17:59:35 +02:00
Marius Bakke
6cd715adef gnu: python-scipy: Update to 1.1.0. 
* gnu/packages/python.scm (python-scipy): Update to 1.1.0.
 2018-09-09 17:59:35 +02:00
Marius Bakke
f6f8645cc9 gnu: libcmis: Fix FTBFS with Boost >= 1.68.0. 
* gnu/packages/libreoffice.scm (libcmis)[arguments]: Add phase to substitute
header file name.
 2018-09-09 17:59:35 +02:00
Marius Bakke
436969904c gnu: vigra: Fix FTBFS with Numpy >= 1.15. 
* gnu/packages/image.scm (vigra)[arguments]: Disable one more test.
 2018-09-09 17:59:34 +02:00
Marius Bakke
6bbbdb1a34 gnu: oath-toolkit: Fix FTBFS with Glibc >= 2.28. 
* gnu/packages/patches/oath-toolkit-glibc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/authentication.scm (oath-toolkit)[source](patches): New field.
 2018-09-09 17:59:34 +02:00
Marius Bakke
0171019418 gnu: openssl: Update to 1.0.2p. 
* gnu/packages/patches/openssl-1.0.2-CVE-2018-0495.patch,
gnu/packages/patches/openssl-1.0.2-CVE-2018-0732.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/tls.scm (openssl): Update to 1.0.2p.
[source](patches): Remove obsolete.
 2018-09-09 17:57:39 +02:00
Marius Bakke
16676fc3b1 gnu: curl: Remove graft for 7.61.1. 
* gnu/packages/curl.scm (curl): Update to 7.61.1.
(curl-7.61.1): Remove variable.
 2018-09-09 17:55:33 +02:00
Marius Bakke
842c44c974 gnu: ghostscript: Remove graft for 9.24. 
* gnu/packages/patches/ghostscript-CVE-2018-10194.patch,
gnu/packages/patches/ghostscript-runpath.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/ghostscript.scm (ghostscript): Update to 9.24.
(ghostscript/fixed): Remove variable.
 2018-09-09 17:54:32 +02:00
Marius Bakke
0aeb134850 Merge branch 'master' into core-updates 2018-09-09 17:40:35 +02:00
Marius Bakke
0084744b3a gnu: ghostscript: Update replacement to 9.24 [security fixes]. 
The following CVEs are fixed with this release: CVE-2018-15908,
CVE-2018-15909, CVE-2018-15910, CVE-2018-15911, CVE-2018-16509,
CVE-2018-16510, CVE-2018-16511, CVE-2018-16513, CVE-2018-16539,
CVE-2018-16540, CVE-2018-16541, CVE-2018-16542, CVE-2018-16543.

* gnu/packages/patches/ghostscript-CVE-2018-10194.patch: Delete file.
* gnu/packages/patches/ghostscript-CVE-2018-16509.patch,
gnu/packages/patches/ghostscript-bug-699708.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ghostscript.scm (ghostscript/fixed): Update to 9.24.
[source](patches): Remove 'ghostscript-CVE-2018-10194.patch' and
'ghostscript-runpath.patch'.  Add 'ghostscript-CVE-2018-16509.patch' and
'ghostscript-bug-699708.patch'.
[arguments]: Add LDFLAGS to #:configure-flags, and a phase to create output
directory.
 2018-09-09 16:43:11 +02:00
Marius Bakke
910a20e2b8 gnu: jbig2dec: Replace with 0.15 [security fixes]. 
* gnu/packages/image.scm (jbig2dec-0.15): New public variable.
(jbig2dec)[replacement]: New field.
 2018-09-09 16:43:11 +02:00
Marius Bakke
a617fd55df gnu: OpenBLAS: Update source URI. 
* gnu/packages/maths.scm (openblas)[source](uri): Use the more stable
SourceForge mirror.
 2018-09-09 16:43:11 +02:00
Marius Bakke
1448fa2547 gnu: openal: Update to 1.19.0. 
* gnu/packages/audio.scm (openal): Update to 1.19.0.
 2018-09-09 16:43:11 +02:00
Marius Bakke
e9c1492f66 gnu: glm: Update to 0.9.9.1. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.1.
 2018-09-09 16:43:10 +02:00
Marius Bakke
91b3a6d4db gnu: msmtp: Remove unneeded input. 
* gnu/packages/mail.scm (msmtp)[inputs]: Remove LIBIDN, which is only required
when using OpenSSL (or GnuTLS sans IDN support).
 2018-09-09 16:43:10 +02:00