d19b14c834
Merge branch 'master' into core-updates
2020-03-21 22:16:02 +01:00
2aaa09f17d
gnu: hdf-eos2: Use HTTPS home page.
...
* gnu/packages/maths.scm (hdf-eos2)[home-page]: Use HTTPS.
2020-03-21 03:09:51 +01:00
c4d769d359
Merge branch 'master' into core-updates
2020-03-18 19:41:08 +01:00
961d2ee269
Merge branch 'master' into core-updates
2020-03-14 13:13:40 +01:00
b471337dea
gnu: suitesparse: Build with cmake-minimal.
...
* gnu/packages/maths.scm (suitesparse)[native-inputs]: Change from CMAKE to
CMAKE-MINIMAL.
2020-03-14 11:55:33 +01:00
d3be522036
gnu: openlibm: Use HTTPS home page.
...
* gnu/packages/maths.scm (openlibm)[home-page]: Use HTTPS.
2020-03-14 22:01:40 +01:00
6ceb771657
gnu: define dune-*-openmpi packages
...
* gnu/packages/maths.scm (dune-common-openmpi, dune-geometry-openmpi,
dune-istl-openmpi, dune-typetree-openmpi, dune-uggrid-openmpi,
dune-grid-openmpi, dune-alugrid-openmpi, dune-subgrid-openmpi,
dune-localfunctions-openmpi, dune-functions-openmpi,
dune-pdelab-openmpi): New variables.
(add-openmpi-to-dune-package): New function to add openmpi to the
inputs of a dune-* package and replace all dune-* packages in its
input with the corresponding dune-*-openmpi package.
Signed-off-by: Ludovic Courtès <ludo@gnu.org >
2020-03-14 17:54:34 +01:00
393dc1cc0b
gnu: dune-*: remove openmpi dependency
...
* gnu/packages/maths.scm (dune-*)[inputs]: Remove openmpi dependency.
[arguments]: remove code to setup openmpi for tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org >
2020-03-14 17:54:34 +01:00
0a703c0486
gnu: dune-istl: Build with suitesparse
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* gnu/packages/maths.scm (dune-istl)[inputs]: Add suitesparse to build
additional solvers in dune-istl.
Signed-off-by: Ludovic Courtès <ludo@gnu.org >
2020-03-12 11:52:38 +01:00
f1f9466e33
gnu: Add dune-subgrid
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* gnu/packages/maths.scm (dune-subgrid): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org >
2020-03-12 11:52:38 +01:00
07ebb75d17
gnu: Add dune-uggrid.
...
* gnu/packages/maths.scm (dune-uggrid): New variable.
(dune-grid)[propagated-inputs]: Add dune-uggrid dependency, so
that the UGGrid class in dune-grid can be used by packages that
have dune-grid as input.
(dune-functions)[arguments]: Enable tests that previously weren't
built as they require dune-uggrid.
Signed-off-by: Ludovic Courtès <ludo@gnu.org >
2020-03-12 11:52:38 +01:00
a669f6e27b
gnu: dune-*: set up MPI for tests
...
* gnu/packages/maths.scm (dune-common, dune-grid, dune-istl,
dune-alugrid): [arguments]: correctly set up MPI instead of disabling
tests that require MPI.
Signed-off-by: Ludovic Courtès <ludo@gnu.org >
2020-03-12 11:52:38 +01:00
50b99c90c8
Merge branch 'master' into core-updates
2020-03-10 20:50:02 +01:00
80fafdba1c
gnu: speedcrunch: Use HTTPS home page.
...
* gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS.
2020-03-09 16:01:18 +01:00
5969598149
gnu: openblas: Use HTTPS home page.
...
* gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS.
2020-03-07 12:48:18 +01:00
1d3c6a31b5
gnu: wxmaxima: Update to 20.02.4.
...
* gnu/packages/maths.scm (wxmaxima): Update to 20.02.4.
[arguments]: Enable tests and set #:test-target to "test".
[native-inputs]: Add xorg-server-for-tests.
2020-03-06 15:04:34 -05:00
df5a2e4f83
gnu: OpenBLAS: Update to 0.3.9.
...
* gnu/packages/maths.scm (openblas): Update to 0.3.9.
2020-03-05 23:36:05 +01:00
aac148a87b
gnu: SuiteSparse: Update to 5.7.1.
...
* gnu/packages/maths.scm (suitesparse): Update to 5.7.1.
[source]: The latest releases of SuiteSparse have only been published on GitHub.
Fetch from git tag as GitHub releases page only contains autogenerated tarballs
that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to
find SuiteSparse_config.
[arguments]: Add CMake flags used by new components GraphBLAS and Mongoose.
[native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose.
* gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Leo Famulari <leo@famulari.name >
2020-03-04 18:08:13 -05:00
ebb7cf9e21
Merge branch 'master' into core-updates
2020-03-04 23:16:17 +01:00
f6b4d395fd
gnu: z3: Build the Python bindings
...
* gnu/packages/maths.scm (z3)[arguments]: Add the --python and
--pypkgdir flags to configure. To facilitate the latter, add
(guix build python-build-system) to #:modules and #:imported-modules.
2020-02-23 17:58:38 +01:00
b457f3cc16
gnu: Add vinci.
...
* gnu/packages/maths.scm (vinci): New variable.
2020-02-21 13:30:25 +01:00
087c94019d
gnu: OpenBLAS: Update to 0.3.8.
...
* gnu/packages/maths.scm (openblas): Update to 0.3.8.
2020-02-15 22:02:56 +01:00
7edafc884c
Merge branch 'master' into core-updates
2020-02-14 19:05:45 +01:00
8a0dd289c5
gnu: octave, octave-cli: Update to 5.2.0.
...
* gnu/packages/maths.scm (octave, octave-cli): Update to 5.2.0.
[inputs]: Add bdb.
2020-02-10 14:43:06 -05:00
52665d2b6b
Merge branch 'staging' into core-updates
2020-02-03 15:45:44 +01:00
aa2e83cce2
gnu: superlu-dist: Update to 6.2.0.
...
* gnu/packages/maths.scm (superlu-dist): Update to 6.2.0.
[source]: Update upstream url. Remove mpi deprecations patch.
* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-01-31 09:17:16 -06:00
48fe5c36a2
gnu: superlu: Update upstream url.
...
* gnu/packages/maths.scm (superlu)[source,home-page]: Update url.
2020-01-31 09:13:57 -06:00
12d8adbfc0
Merge branch 'staging' into core-updates
2020-01-23 23:11:11 +01:00
48446f0f94
gnu: wxmaxima: Update to 20.01.3.
...
* gnu/packages/maths.scm (wxmaxima): Update to 20.01.3.
[home-page]: Update URL.
2020-01-23 14:22:41 -05:00
4bd428a7ce
gnu: Replace uses of 'libjpeg' with 'libjpeg-turbo'.
...
* gnu/packages/abiword.scm (abiword)[inputs]: Change from LIBJPEG to
LIBJPEG-TURBO.
* gnu/packages/admin.scm (testdisk)[inputs]: Likewise.
* gnu/packages/algebra.scm (giac)[inputs]: Likewise.
* gnu/packages/animation.scm (synfig)[inputs]: Likewise.
* gnu/packages/astronomy.scm (gnuastro, celestia)[inputs]: Likewise.
* gnu/packages/cdrom.scm (dvdstyler)[inputs]: Likewise.
* gnu/packages/cran.scm (r-jpeg, r-tiff, r-readbitmap)[inputs]: Likewise.
* gnu/packages/cups.scm (cups-filters, hplip)[inputs]: Likewise.
* gnu/packages/display-managers.scm (slim)[inputs]: Likewise.
* gnu/packages/ebook.scm (fbreader)[inputs]: Likewise.
* gnu/packages/emacs.scm (emacs)[inputs]: Likewise.
* gnu/packages/enlightenment.scm (efl)[propagated-inputs]: Likewise.
* gnu/packages/fltk.scm (fltk, ntk)[inputs]: Likewise.
* gnu/packages/fontutils.scm (fontforge)[inputs]: Likewise.
* gnu/packages/freedesktop.scm (weston)[inputs]: Likewise.
* gnu/packages/game-development.scm (sfml, allegro, aseprite, python-pygame,
eureka, ioquake3)[inputs]: Likewise.
* gnu/packages/games.scm (adanaxisgpl, freedroidrpg, irrlicht, minetest,
fizmo, supertuxkart, gzdoom, xmoto, xonotic)[inputs]: Likewise.
* gnu/packages/gd.scm (gd, perl-gd)[inputs]: Likewise.
* gnu/packages/ghostscript.scm (lcms)[inputs]: Likewise.
(ghostscript)[inputs, native-inputs]: Likewise.
* gnu/packages/gimp.scm (gegl, gimp)[inputs]: Likewise.
* gnu/packages/gnome.scm (libgnomeui, eog, tracker-miners, gthumb)[inputs]: Likewise.
* gnu/packages/gnunet.scm (libextractor)[inputs]: Likewise.
* gnu/packages/gnustep.scm (windowmaker)[inputs]: Likewise.
* gnu/packages/graphics.scm (blender, blender-2.79, openimageio,
openscenegraph, openscenegraph-3.4, povray, fgallery)[inputs]: Likewise.
* gnu/packages/graphviz.scm (graphviz)[inputs]: Likewise.
* gnu/packages/gstreamer.scm (gst-plugins-good)[inputs]: Likewise.
* gnu/packages/gtk.scm (gdk-pixbuf)[inputs]: Likewise.
* gnu/packages/image-processing.scm (dcmtk, mia, vtk, opencv, vips, nip2, vxl,
insight-toolkit)[inputs]: Likewise.
* gnu/packages/image-viewers.scm (gpicview, luminance-hdr)[inputs]: Likewise.
* gnu/packages/image.scm (jpegoptim, libtiff, leptonica, imlib2, freeimage,
vigra, libwebp, libmng, jasper, steghide, jp2a)[inputs]: Likewise.
* gnu/packages/imagemagick.scm (imagemagick, graphicsmagick)[inputs]: Likewise.
* gnu/packages/java.scm (icedtea-6, icedtea-7, openjdk9, openjdk11,
openjdk12)[inputs]: Likewise.
* gnu/packages/kde-frameworks.scm (khtml)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[inputs]: Likewise.
* gnu/packages/machine-learning.scm (dlib, tensorflow)[inputs]: Likewise.
* gnu/packages/mate.scm (atril, eom)[inputs]: Likewise.
* gnu/packages/maths.scm (hdf4, hdf-java, hdf-eos2, netcdf)[inputs]: Likewise.
* gnu/packages/netpbm.scm (netpbm)[inputs]: Likewise.
* gnu/packages/pdf.scm (zathura-pdf-mupdf, podofo, mupdf, fbida)[inputs]: Likewise.
* gnu/packages/photo.scm (libraw, libpano13, enblend-enfuse, darktable, hugin,
rawtherapee)[inputs]: Likewise.
* gnu/packages/prolog.scm (swi-prolog)[native-inputs]: Likewise.
* gnu/packages/python-xyz.scm (python-hdf4, python-pillow)[inputs]: Likewise.
* gnu/packages/qt.scm (qtbase, qtwebkit)[inputs]: Likewise.
* gnu/packages/rdesktop.scm (freerdp)[inputs]: Likewise.
* gnu/packages/scanner.scm (sane-backends, xsane)[inputs]: Likewise.
* gnu/packages/scheme.scm (racket)[inputs]: Likewise.
* gnu/packages/scribus.scm (scribus)[inputs]: Likewise.
* gnu/packages/sdl.scm (sdl-image)[propagated-inputs]: Likewise.
(guile-sdl)[native-inputs]: Likewise.
* gnu/packages/spice.scm (spice-gtk)[inputs]: Likewise.
* gnu/packages/statistics.scm (r-with-tests)[inputs]: Likewise.
* gnu/packages/tcl.scm (perl-tk)[inputs]: Likewise.
* gnu/packages/upnp.scm (readymedia)[inputs]: Likewise.
* gnu/packages/video.scm (mplayer, mpv, v4l-utils, motion)[inputs]: Likewise.
* gnu/packages/web-browsers.scm (dillo, links)[inputs]: Likewise.
* gnu/packages/web.scm (netsurf)[inputs]: Likewise.
* gnu/packages/webkit.scm (webkitgtk)[inputs]: Likewise.
* gnu/packages/wine.scm (wine)[inputs]: Likewise.
* gnu/packages/wv.scm (wv)[inputs]: Likewise.
* gnu/packages/wxwidgets.scm (wxwidgets, wxwidgets-2)[inputs]: Likewise.
* gnu/packages/xdisorg.scm (xscreensaver)[inputs]: Likewise.
* gnu/packages/xfce.scm (tumbler)[inputs]: Likewise.
* gnu/packages/xfig.scm (xfig, transfig)[inputs]: Likewise.
* gnu/packages/xorg.scm (xpra)[inputs]: Likewise.
2020-01-22 22:12:34 +01:00
8ed9be3fac
Merge branch 'staging' into core-updates
2020-01-21 22:39:42 +01:00
1e05e837c7
gnu: elemental: Update home page.
...
* gnu/packages/maths.scm (elemental)[home-page]: Use repository home
page.
2020-01-19 17:57:09 +01:00
2299d83e2f
gnu: petsc: Use HTTPS home page.
...
* gnu/packages/maths.scm (petsc)[home-page, license]: Use HTTPS.
2020-01-19 06:09:02 +01:00
0a44f9c4e4
gnu: Use HTTPS for www.hdfgroup.org.
...
* gnu/packages/maths.scm (hdf5)[home-page, license]: Use HTTPS.
(hdf-java, h5check)[source]: Likewise.
2020-01-17 23:32:34 +01:00
821aa687b4
gnu: netcdf: Use HTTPS home page.
...
* gnu/packages/maths.scm (netcdf)[home-page]: Use HTTPS.
2020-01-17 23:32:34 +01:00
d5730000e2
gnu: scotch: Use HTTPS home page.
...
* gnu/packages/maths.scm (scotch)[home-page]: Use HTTPS.
2020-01-17 23:32:34 +01:00
a3143063ae
Update email address for Amin Bandali.
...
* .mailmap: Add name and email addresses for Amin Bandali.
* gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm:
Update email address for Amin Bandali.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr >
2020-01-17 18:30:33 +01:00
3cfe76bec0
Merge branch 'master' into core-updates
2020-01-15 00:09:46 +01:00
09bad3cd42
gnu: python-slepc4py: Update to 3.11.0.
...
* gnu/packages/maths.scm (python-slepc4py): Update to 3.11.0.
2020-01-14 17:24:11 +00:00
f1cc312e15
gnu: python-petsc4py: Update to 3.11.0.
...
* gnu/packages/maths.scm (python-petsc4py): Update to 3.11.0.
2020-01-14 17:23:50 +00:00
b7bf02a418
Merge branch 'master' into core-updates
2020-01-11 22:38:24 +01:00
cb169aae81
gnu: hdf5@1.10: Update to 1.10.6.
...
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.6.
2020-01-10 23:47:28 +01:00
e6de152dc1
gnu: lapack: Update to 3.9.0.
...
* gnu/packages/maths.scm (lapack): Update to 3.9.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org >
2020-01-07 12:25:09 +01:00
ce9383c090
Merge remote-tracking branch 'master' into core-updates.
2019-12-31 11:04:51 +01:00
94fea21b21
gnu: hdf5@1.10: Update to 1.10.5.
...
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5. Remove
"hdf5-mpi-deprecations.patch".
* gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-13 18:04:04 +01:00
c9e676d0b1
Merge remote-tracking branch 'origin/master' into core-updates
2019-12-12 04:10:59 +02:00
0ffc2d537d
gnu: Add lrslib.
...
* gnu/packages/maths.scm (lrslib): New variable.
2019-12-06 22:56:02 +01:00
9d5aa00906
Merge branch 'master' into core-updates
2019-12-05 17:57:35 +01:00
33b59c1a3e
Merge branch 'staging'
2019-12-04 20:12:41 +01:00
dbef037ff4
gnu: z3: Update to 4.8.7.
...
* gnu/packages/maths.scm (z3): Update to 4.8.7.
2019-12-01 00:49:15 +01:00
Marius Bakke