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573 Commits

Author SHA1 Message Date
Hugo Buddelmeijer
1d1fcaf4e9 gnu: python-scikit-image: Fix build with python-pillow 12.1.1. 
Followup to 017903d435f987c50c085bf415a07a551684412b.

* gnu/packages/python-science.scm (python-scikit-image): Fix build.
[source]: Add patch.
* gnu/packages/patchen/python-scikit-image-fix-python-pillow.patch: Add.
* gnu/local.mk (dist_patch_DATA): Register patch.

Merges: https://codeberg.org/guix/guix/pulls/7261
Change-Id: I7eee2e1f397f1f1ce0757f588da921687296ad41
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-04-04 22:42:03 +01:00
Nicolas Graves
7bfb520b7f gnu: python-orsopy: Switch to pyproject. 
* gnu/packages/python-science.scm (python-orsopy):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:test-flags>: Set them.
<#:phases>: Drop them accordingly.
[native-inputs]: Add python-setuptools.

Change-Id: Ic7116a6d6a23eea4b8e15c557b2967fd9d0d48af
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-04-04 22:42:03 +01:00
Nicolas Graves
44df0200cd gnu: packages: Remove python-pytest-cov native-inputs. 
Obtained with
./pre-inst-env guix style -S remove-native-inputs -t python-pytest-cov
on top of https://codeberg.org/guix/guix/pulls/5862

For this reason, I don't think it's relevant to generate a GNU Style
Changelog.

Change-Id: I58fe10452d7eaf2e8bb4dc88dfac5b4a5ee46165
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-04-04 22:41:59 +01:00
Nicolas Graves
394a19e0c8 gnu: python-pingouin: Drop phase 'fix-pytest-config. 
* gnu/packages/python-science.scm (python-pingouin)[arguments]
<#:phases>: Drop phase 'fix-pytest-config.

Change-Id: Ieadcbabed58f87ae3e5a4d54e158bfa6d8b322a2
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-04-04 22:41:55 +01:00
Nicolas Graves
e25316a61a gnu: python-tspex: Drop phase 'fix-pytest-config. 
* gnu/packages/python-science.scm (python-tspex)[arguments]
<#:phases>: Drop phase 'fix-pytest-config.

Change-Id: I41624e1f8dd044e25408b445b28759d8d52d62e4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-04-04 22:41:55 +01:00
Nicolas Graves
44424e0b72 gnu: python-scikit-misc: Drop phase 'fix-pytest-config. 
* gnu/packages/python-science.scm (python-scikit-misc)[arguments]
<#:phases>: Drop phase 'fix-pytest-config.

Change-Id: Ic828d3d3d645b8e87c6ad50ed08008a9a6987372
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-04-04 22:41:55 +01:00
Nicolas Graves
daeb343ba3 gnu: python-numdifftools: Drop phase 'fix-pytest-config. 
* gnu/packages/python-science.scm (python-numdifftools)[arguments]
<#:phases>: Drop phase 'fix-pytest-config.

Change-Id: Ib0cd60fd668cccab7cbb16d5e4b1bdb9fd7f96aa
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-04-04 22:41:55 +01:00
Nicolas Graves
ad3701a317 gnu: python-pandas-flavor: Improve python-pytest-cov removal. 
* gnu/packages/python-science.scm (python-pandas-flavor)[arguments]:
Drop them.

Change-Id: I3c83750eeb95b755c6160fc10b0d34cb8fd9a465
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-04-04 22:41:54 +01:00
Nicolas Graves
4148c2d4bb gnu: python-distributed: Drop phase 'fix-pytest-config. 
* gnu/packages/python-science.scm (python-distributed)[arguments]
<#:phases>: Drop phase 'fix-pytest-config.

Change-Id: Id5312389fdca9f9a456163d649084ef69e1d6a33
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-04-04 22:41:53 +01:00
Nicolas Graves
0a5849cb47 gnu: python-dask: Drop phase 'fix-pytest-config. 
* gnu/packages/python-science.scm (python-dask)[arguments]<#:phases>:
 Drop phase 'fix-pytest-config.

Change-Id: I6eea2cf2b1685b0fdb61afb6c55cda2605056ff1
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-04-04 22:41:53 +01:00
Nicolas Graves
39ca6bade6 build-system/pyproject: Stop hiding options. 
* gnu/packages/python-crypto.scm (python-keyring)
[arguments]<#:test-flags>: Remove arguments hiding coverage options.

* gnu/packages/python-web.scm (python-asgi-lifespan,
python-openapi-schema-validator, python-openapi-spec-validator,
python-openapi-core)[arguments]<#:test-flags>: Remove arguments hiding
coverage options.
(python-openapi-schema-validator, python-openapi-spec-validator)
[arguments]<#:phases>: Remove 'remove-coverage-pytest-options phase.
(python-cssselect2)[arguments]: Remove uneeded field.
(python-quart)[arguments]: Remove uneeded field.
(python-jsonpickle)[arguments]<#:test-flags>: Remove uneeded
test-flags.

* gnu/packages/python-xyz.scm (python-cattrs)
[arguments]<#:phases>: Remove arguments hiding coverage options.
(python-blessed)[arguments]: Remove uneeded field.

python-pytest-cov remove option

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-04-04 22:41:51 +01:00
Nicolas Graves
9160351b94 build-system/pyproject: Remove python-pytest-cov native-input. 
* gnu/packages/astronomy.scm (python-wiimatch)
* gnu/packages/audio.scm (python-resampy, python-librosa)
* gnu/packages/backup.scm (borgmatic)
* gnu/packages/bioinformatics.scm
(python-bed-reader, python-pysnptool, python-pairtools)
* gnu/packages/check.scm (python-pytest-nunit, python-pytest-perf)
* gnu/packages/dav.scm (vdirsyncer, radicale)
* gnu/packages/django.scm (python-django-redis)
* gnu/packages/engineering.scm (python-scikit-rf)
* gnu/packages/fediverse.scm (python-mastodon-py)
* gnu/packages/fontutils.scm (psautohint)
* gnu/packages/geo.scm (python-pyogrio)
* gnu/packages/graphviz.scm (python-uqbar)
* gnu/packages/jupyter.scm (python-jupyterlab-server python-nbclient,
python-jupyterlite-core, python-ipydatawidgets)
* gnu/packages/machine-learning.scm
(python-pymanopt, python-tensorly, python-torchmetrics)
* gnu/packages/maths.scm (python-libensemble)
* gnu/packages/music.scm (stargate)
* gnu/packages/python-check.scm (python-atpublic, python-vcrpy)
* gnu/packages/python-compression.scm (python-zipstream-ng)
* gnu/packages/python-science.scm (python-plotnine,
python-pandaparallel, python-pyts, python-pingouin)
* gnu/packages/python-web.scm (python-devpi-process, python-cheroot)
(python-jsonpickle, python-flask-babel, python-url-normalize)
(python-elasticsearch, python-hupper, python-simple-websocket)
(python-apiron, python-huggingface-hub, python-aiosignal, python-ovh)
(python-cbor2, python-zeep, hypercorn, python-warcio)
(python-aioftp, python-oauthlib, python-tinycss2, python-cssselect2)
(python-httpcore, python-wsgiprox, python-venusian, gunicorn)
* gnu/packages/python-xyz.scm (python-janus, python-affine)
(python-contourpy, python-echo, python-rasterio, python-rich-tables)
(python-babel, python-pymarshal, python-portalocker)
(python-expandvars, python-mizani, python-cligj, autokey)
(python-robotframework-pythonlibcore, python-lsp-jsonrpc)
(python-numpydoc, python-pillow, python-manimpango)
(python-cairocffi, python-pubmed-parser, python-sentry-sdk)
(python-prettytable, python-sniffio, python-ipywidgets)
(python-pyproject-api, python-pymemcache, python-async-lru)
(python-numcodecs, python-mwclient, python-cmd2, python-pyan3)
(python-platformdirs, python-multipart, python-shtab, python-scooby)
* gnu/packages/rdf.scm (python-rdflib-6)
* gnu/packages/simulation.scm (python-fenics-dijitso)
* gnu/packages/sphinx.scm (python-sphinx-design)
* gnu/packages/statistics.scm (python-patsy, python-rchitect)
* gnu/packages/task-management.scm (todoman)
* gnu/packages/vpn.scm (sshuttle)
* gnu/packages/web.scm (anonip, python-tibanna)
[native-inputs]: Remove python-pytest-cov.

Change-Id: I32f027794e90333c27fdff5871180779f603846c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-04-04 22:41:51 +01:00
Nguyễn Gia Phong
53f18b563c gnu: Remove phase done by set-version in pyproject-build-system. 
* gnu/packages/astronomy.scm (python-kanon)[arguments]<#:phases>:
  Remove 'relax-requirements and 'set-version.
  (python-stpipe)[arguments]<#:phases>:
  Remove 'set-version.
* gnu/packages/machine-learning.scm
  (python-botorch)[arguments]<#:phases>: Remove 'pretend-version.
* gnu/packages/openstack.scm
  (python-os-testr, python-requestsexceptions)[arguments]<#:phases>:
  Remove 'set-version.
* gnu/packages/package-management.scm
  (python-conda-libmamba-solver)[arguments]<#:phases>:
  Remove 'set-version.
* gnu/packages/patchutils.scm (pwclient)[arguments]<#:phases>:
  Remove 'set-PBR_VERSION.
* gnu/packages/python-check.scm
  (python-aioresponses)[arguments]<#:phases>: Remove 'set-pbr-version.
* gnu/packages/python-science.scm
  (python-modin, python-plotly, python-pytensor)[arguments]<#:phases>:
  Remove 'versioneer.
  (snakemake-5, snakemake-6, snakemake-7)[arguments]<#:phases>:
  Remove 'patch-version.
* gnu/packages/python-web.scm (python-alpaca-py)[arguments]<#:phases>:
  Remove 'set-version.
* gnu/packages/python-xyz.scm
  (python-logical-unification)[arguments]<#:phases>:
  Remove 'versioneer.
  (python-debugpy, python-strenum)[arguments]<#:phases>:
  Remove 'fix-version.
  (python-qstylizer)[arguments]<#:phases>: Remove 'set-pbr-version.
  (python-retry)[arguments]<#:phases>: Remove 'set-version.
* gnu/packages/statistics.scm (python-pymc)[arguments]<#:phases>:
  Remove 'versioneer.

Change-Id: I7b4557c576730e47575305f4f03bfe2523412c6c
Reviewed-by: Nicolas Graves <ngraves@ngraves.fr>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-04-04 22:41:47 +01:00
Vinicius Monego
346f9a93ef gnu: Add python-flox. 
* gnu/packages/python-science.scm (python-flox): New variable.

Change-Id: I661c37869a28e65bd707ef09a909278d5412ae9a
 2026-03-30 20:59:38 -03:00
Vinicius Monego
7eb217dc99 gnu: Add python-numbagg. 
* gnu/packages/python-science.scm (python-numbagg): New variable.

Change-Id: I49856891cdbfc3f85c0753d5d3ea344c58ac4565
 2026-03-30 20:59:38 -03:00
Efraim Flashner
2f4e0e7026 gnu: python-polars-runtime-32: Fix build. 
* gnu/packages/python-science.scm (python-polars-runtime-32)[arguments]:
In the prepare-cargo-build-system phase, add prepare-rust-crates phase
from cargo-build-system.

Change-Id: Ibec2f8b9299d7510a9258c73e8dc64a6b8e184d3
 2026-03-30 19:28:35 +03:00
Vinicius Monego
ee567ba7b9 gnu: python-sparse: Update to 0.18.0. 
* gnu/packages/python-science.scm (python-sparse): Update to 0.18.0.
[native-inputs]: Remove python-wheel.

Change-Id: I524ff3eef96f73c6dc12efb3b60288d122dc4d8b
 2026-03-29 11:18:33 -03:00
Ludovic Courtès
2a50c9598b gnu: Reference the inherited ‘arguments’ value. 
This commit was made by running this command:

  sed -e's/substitute-keyword-arguments (package-arguments [a-zA-Z0-9-]\+)/substitute-keyword-arguments arguments/g' -i gnu/packages/*.scm

… and then:

  1. reverting changes from ‘gnu/packages/rust.scm’ and
     ‘gnu/packages/java.scm’ since they would incur derivation changes and/or
     breakage;
  2. reverting the change for ‘gcc-final’ in ‘gnu/packages/commencement.scm’;
  3. reverting the change for ‘onnx-optimizer’, ‘openquest’, and ‘certbot’,
     which use ‘substitute-keyword-arguments’ for arguments that are not
     inherited (and thus ‘arguments’ would be unbound);
  4. reverting the change for ‘insight-toolkit-legacy’ and ‘wine64-staging’
     which make bogus assumptions about inherited arguments.

Change-Id: I122a7cf517b6b63cae38944b5d33ade4b1f5a89c
 2026-03-20 13:27:15 +01:00
Alexis Simon
2676117710 gnu: Add python-polars. 
* gnu/packages/python-science.scm (python-polars-runtime-32,
python-polars): New variables.
* gnu/packages/rust-crates.scm: Add python-polars-runtime-32.
* gnu/packages/rust-sources.scm: Add rust-tikv-jemallocator-for-polars.

Change-Id: Ib36d95a0102da990512002b29f0a55732922040b
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2026-03-10 12:46:17 +02:00
Maxim Cournoyer
e819590cdf gnu: python-scikit-image: Update to 0.26.0. 
This fixes a test failure.

* gnu/packages/python-science.scm (python-scikit-image): Update to 0.26.0.
[#:test-flags]: Remove --pyargs (otherwise no test would run).  Add upstream
issue reference in comment.
[#:phases]: Delete argument.
[native-inputs]: Add python-pytest-pretty.

Change-Id: I4ecf593faa74174d941f47f8569caa7badada1ee
 2026-03-08 09:49:45 +09:00
Danny Milosavljevic
f674270c07 gnu: python-cvxpy: Fix intermittent build failure. 
* gnu/packages/python-science.scm (python-cvxpy)[arguments]<#:phases>{set-ci-environment}:
New phase.

Change-Id: I4e76b5e88c03f4b2c6915181231b700512d6f37a
 2026-03-07 03:09:48 +01:00
Gabriel Wicki
f86ff1db98 gnu: Pin old pybind11 version. 
* gnu/packages/python-xyz.scm (pybind11): Move definition to (pybind11-2).
(python-awkward-cpp, python-contourpy, python-hnswlib, python-dm-tree,
python-matplotlib, python-pikepdf, python-optree, python-fusepy): Change
reference to pybind11-2.

* gnu/packages/astronomy.scm (aoflagger, python-galsim, python-pyclp),
  gnu/packages/bioinformatics.scm (python-metacells, python-strawc,
  python-coolbox, python-pyspoa, python-scvelo),
  gnu/packages/chemistry.scm (avogadrolibs),
  gnu/packages/computer-architecture.scm (gem5),
  gnu/packages/duckdb.scm (python-duckdb),
  gnu/packages/electronics.scm (nextpnr, prjtrellis),
  gnu/packages/engineering.scm (python-orocos-kinematics-dynamics),
  gnu/packages/geo.scm (ogs-serial),
  gnu/packages/graphics.scm (openshadinglanguage, openimageio),
  gnu/packages/image-processing.scm (opencolorio),
  gnu/packages/machine-learning.scm (python-fasttext, python-ml-dtypes, onnx,
  onnx-optimizer, onnxruntime, dlib, tensorflow-lite, tensorpipe,
  python-pytorch, python-torchvision, python-ctranslate2, python-hmmlearn,
  python-dlib),
  gnu/packages/maths.scm (python-accupy, python-ducc0),
  gnu/packages/networking.scm (libcamera),
  gnu/packages/opencl.scm (python-pyopencl),
  gnu/packages/package-management.scm (python-libmambapy),
  gnu/packages/physics.scm (python-brille, python-gofit),
  gnu/packages/python-check.scm (python-xdoctest),
  gnu/packages/python-science.scm (pyre, python-boost-histogram, python-cvxpy,
  python-iminuit, python-osqp, python-pyamg, python-qdldl,
  python-scikit-build-core, python-scipy, python-vaex-core, python-pyfma),
  gnu/packages/radio.scm (gnuradio, gr-osmosdr, gr-dsd, gr-iqbal,
  gr-satellites, limesuite-ng),
  gnu/packages/simulation.scm (fenics, python-dolfin-adjoint),
  gnu/packages/statistics.scm (python-diptest, python-george),
  gnu/packages/syndication.scm (syndication-domination): Change reference to pybind11-2.

Change-Id: Ib6abc8580fc2b4c35172f251ff6ba7d80ced4b7b
Signed-off-by: Gabriel Wicki <gabriel@erlikon.ch>
 2026-03-05 15:53:36 +01:00
Vinicius Monego
78e801ab9c gnu: python-iminuit: Update to 2.32.0. 
* gnu/packages/python-science.scm (python-iminuit): Update to 2.32.0.

Change-Id: Ib60c59e34813ccc2e6276bff95d0804916863e71
 2026-03-01 23:38:56 -03:00
Vinicius Monego
e479e7a8cb gnu: python-decaylanguage: Update to 0.20.2. 
* gnu/packages/python-science.scm (python-decaylanguage): Update to
0.20.2.

Change-Id: I172a9d58f50d7deaaf270a8f39ecbbfc47e6d73e
 2026-03-01 23:38:56 -03:00
Vinicius Monego
d46f3e7fc2 gnu: python-particle: Update to 0.26.1. 
* gnu/packages/python-science.scm (python-particle): Update to 0.26.1.

Change-Id: I1fd567c879933d03019b65b5d55a2df491a7f850
 2026-03-01 23:38:56 -03:00
Vinicius Monego
19df6a870a gnu: python-hepunits: Update to 2.4.4. 
* gnu/packages/python-science.scm (python-hepunits): Update to 2.4.4.
[native-inputs]: Add python-pint.

Change-Id: I9057457dde92ca2c6ce1684ec2df25be8301f304
 2026-03-01 23:38:56 -03:00
Vinicius Monego
d566b701d8 gnu: python-vector: Update to 1.8.0. 
* gnu/packages/python-science.scm (python-vector): Update to 1.8.0.

Change-Id: Ib2c49a2701e222dd688b85d192d866c338cadbfa
 2026-03-01 23:38:56 -03:00
Vinicius Monego
85b86abb52 gnu: python-hist: Update to 2.10.1. 
* gnu/packages/python-science.scm (python-hist): Update to 2.10.1.

Change-Id: Ia78e515fc2b6bf113b4112a2da81260091fa0130
 2026-03-01 23:38:56 -03:00
Vinicius Monego
e1c2d36c96 gnu: python-boost-histogram: Update to 1.7.1. 
* gnu/packages/python-science.scm (python-boost-histogram): Update to
1.7.1.

Change-Id: I6223fbc1ab0a19d2da7b3cc627e9927619c77937
 2026-03-01 23:38:56 -03:00
Sharlatan Hellseher
b05199e7a1 gnu: Add python-quantities. 
* gnu/packages/python-science.scm (python-quantities): New variable.

Change-Id: I40a28c0943a37d2c298b3031f5b22c09cc37b487
 2026-02-28 22:07:07 +00:00
Sharlatan Hellseher
81078bd336 gnu: python-unyt: Update to 3.1.0. 
* gnu/packages/python-science.scm (python-unyt): Update to 3.1.0.
[native-inputs]: Remove python-setuptools and python-setuptools-scm; add
python-flit-core.

Change-Id: I37d7844d15c7ae892834f870c30ac7f0009446f2
 2026-02-28 22:07:02 +00:00
Danny Milosavljevic
69a885dbd7 gnu: python-pyvista: Update to 0.46.5. 
* gnu/packages/python-science.scm (python-pyvista): Update to 0.46.5.
[arguments]<#:test-flags>: Ignore tests/core/test_dataobject_filters.py,
tests/core/test_dataset_filters.py, and tests/plotting/test_plotter.py.
Disable test_read_exodus, test_nek5000_reader, test_exodus_reader_ext,
test_exodus_reader_core, test_exodus_blocks, test_download_dataset_texture,
test_structured_grid_cast_to_explicit_structured_grid,
test_pad_image_multi_component_with_scalar, test_pad_image_raises,
test_points_to_cells_and_cells_to_points_dimensions, test_meshio[cow_ugrid],
test_meshio[points_only], and test_max_positional_args_matches_pyproject.
<#:phases>{patch-pyproject}: Generalize vtk version pattern.
[native-inputs]: Add nss-certs-for-test, python-aiohttp, python-mypy,
python-pandas, python-pytest-cases, python-pytest-mock, python-pytest-pyvista,
which, and xorg-server-for-tests.  Replace python-pytest with python-pytest-8.
[propagated-inputs]: Add python-cmcrameri, python-cmocean, and
python-colorcet.  Replace vtk-9.3 with vtk-9.5.

Change-Id: Ic5b9a7a46c5fee8682a9d0f47d791e2d07de5f64
 2026-02-21 21:52:40 +01:00
Danny Milosavljevic
a8927662b3 gnu: Add python-pytest-pyvista. 
* gnu/packages/python-science.scm (python-pytest-pyvista): New variable.

Change-Id: I03233bf19ba66bf4f33cf92e60de24da8c661562
 2026-02-21 21:52:40 +01:00
Danny Milosavljevic
405d8647ff gnu: Add python-cmcrameri. 
* gnu/packages/python-science.scm (python-cmcrameri): New variable.

Change-Id: I6b41ceeb5774564734a0b7ce5ac6baf0b5d23670
 2026-02-21 21:52:40 +01:00
Danny Milosavljevic
fd6b75b373 gnu: python-euphonic: Move to (gnu packages physics). 
* gnu/packages/python-science.scm (python-euphonic): Move from here…
* gnu/packages/physics.scm (python-euphonic): …to here.

Change-Id: Ica393a72f5c9b8875bef4b4186bc4a8571b83007
 2026-02-21 21:52:39 +01:00
Danny Milosavljevic
00c5a3859d gnu: python-seekpath: Move to (gnu packages physics). 
* gnu/packages/python-science.scm (python-seekpath): Move from here…
* gnu/packages/physics.scm (python-seekpath): …to here.

Change-Id: I67d060c3c5aeebe117b7d5cdeac0666a46e8f270
 2026-02-21 21:52:39 +01:00
Danny Milosavljevic
f8e2f21a82 gnu: python-spglib: Move to (gnu packages physics). 
* gnu/packages/python-science.scm (python-spglib): Move from here…
* gnu/packages/physics.scm (python-spglib): …to here.

Change-Id: I19a757ffbb7ba42065a35e1213b789dae93c645c
 2026-02-21 21:52:39 +01:00
Danny Milosavljevic
59ec18b7b6 gnu: python-quasielasticbayes: Move to (gnu packages physics). 
* gnu/packages/python-science.scm (python-quasielasticbayes): Move from here…
* gnu/packages/physics.scm (python-quasielasticbayes): …to here.

Change-Id: Ib3788df8af26a08ede247ddc243286e107db81c2
 2026-02-21 21:52:39 +01:00
Danny Milosavljevic
d3e7490a5c gnu: python-pystog: Move to (gnu packages physics). 
* gnu/packages/python-science.scm (python-pystog): Move from here…
* gnu/packages/physics.scm (python-pystog): …to here.

Change-Id: Ic2051954eb1c126bde11b2d4545d14065cd8b16b
 2026-02-21 21:52:39 +01:00
Danny Milosavljevic
8154e1d07b gnu: python-pycifrw: Move to (gnu packages physics). 
* gnu/packages/python-science.scm (python-pycifrw): Move from here…
* gnu/packages/physics.scm (python-pycifrw): …to here.

Change-Id: I5b0f5ccb148b555d898a4584da9eb6897ad3126e
 2026-02-21 21:52:39 +01:00
Danny Milosavljevic
2e7ae98c24 gnu: python-brille: Move to (gnu packages physics). 
* gnu/packages/python-science.scm (python-brille): Move from here…
* gnu/packages/physics.scm (python-brille): …to here.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add reference to that file.
* etc/teams.scm (science): Add reference to that file.

Change-Id: I207940441fb4406fb034d5582ba9f5517544179b
 2026-02-21 21:52:38 +01:00
Andreas Enge
0ae891a57d gnu: python-vedo: Update to 2025.5.4. 
* gnu/packages/python-science.scm (python-vedo): Update to 2025.5.4.

Change-Id: Ide16096a2bde0460c62e62b5aa260a5d557e7fc7
 2026-02-13 14:27:37 +01:00
Andreas Enge
03c73b3995 gnu: vtk: Update to 9.4.2 and add vtk-9.3. 
* gnu/packages/image-processing.scm (vtk): Update to 9.4.2.
[origin]: Adapt snippet.
(vtk-9.3): Add back the previous version.
(opencv)[inputs],
* gnu/packages/geo.scm (ogs-serial)[inputs],
* gnu/packages/python-science.scm (python-pyvista)[inputs]: Replace vtk
by vtk-9.3.

Change-Id: I1a567bc30c7845fdd647db0f93cef2cafe1ced76
 2026-02-13 11:46:52 +01:00
Danny Milosavljevic
78b3860f48 gnu: Add python-quasielasticbayes. 
* gnu/packages/python-science.scm (python-quasielasticbayes): New variable.

Change-Id: I4a80e53c2f4c058b8678b599d9a4a3d7752efedb
 2026-02-12 18:58:12 +01:00
Danny Milosavljevic
91ea95eff8 gnu: Add python-euphonic. 
* gnu/packages/python-science.scm (python-euphonic): New variable.

Change-Id: I10ce0b9193e5d342ead24b9e16daefd9d16d40eb
 2026-02-12 18:58:12 +01:00
Danny Milosavljevic
51b803ec26 gnu: Add python-pycifrw. 
* gnu/packages/python-science.scm (python-pycifrw): New variable.

Change-Id: Iaee90ca32d519f1b621e6323e636bfcf231a61f1
 2026-02-12 18:58:11 +01:00
Danny Milosavljevic
b6523e1a20 gnu: Add python-pystog. 
* gnu/packages/python-science.scm (python-pystog): New variable.

Change-Id: I75eb64488c6a190aebee221bb7387dde2c0797c7
 2026-02-12 18:58:10 +01:00
Danny Milosavljevic
daaae8ed29 gnu: Add python-seekpath. 
* gnu/packages/python-science.scm (python-seekpath): New variable.

Change-Id: I8892e74d89112d8927c0a1d223962b9e86742f8b
 2026-02-12 18:58:10 +01:00
Danny Milosavljevic
de73c0c7f3 gnu: Add python-spglib. 
* gnu/packages/python-science.scm (python-spglib): New variable.

Change-Id: I425a7906fe4d9eaa21e7597c6ace97650e58b53a
 2026-02-12 18:58:10 +01:00
Danny Milosavljevic
8516a200ac gnu: Add python-brille. 
* gnu/packages/python-science.scm (python-brille): New variable.

Change-Id: I39db7aff28c9d3d80c1cd404ee91fd1ec5fc89cd
 2026-02-12 18:58:09 +01:00