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1432 Commits

Author SHA1 Message Date
Nicolas Graves
1bf91ac505 gnu: Drop setting SETUPTOOLS_SCM_PRETEND_VERSION in some packages. 
* gnu/packages/astronomy.scm (python-asdf-compression)
(python-asdf-fits-schemas, python-cdflib, python-sunkit-spex):
* gnu/packages/bioinformatics.scm (python-whatshap, python-mudata)
(python-pyfaidx, python-ctxcore, scvelo):
* gnu/packages/bootloaders.scm (dtc):
* gnu/packages/check.scm (python-pytest-xdist, python-pytest-forked):
* gnu/packages/databases.scm (python-fastparquet):
* gnu/packages/disk.scm (greaseweazle-host-tools):
* gnu/packages/docker.scm (python-docker):
* gnu/packages/finance.scm (python-ledgerblue):
* gnu/packages/fontutils.scm (python-compreffor)
(python-defcon-bootstrap, nototools):
* gnu/packages/games.scm (sc-controller):
* gnu/packages/machine-learning.scm (python-botorch):
* gnu/packages/music.scm (python-pylast):
* gnu/packages/package-management.scm (conda):
* gnu/packages/python-build.scm (python-exceptiongroup):
* gnu/packages/python-science.scm (python-dask-image)
(python-distributed, python-osqp):
* gnu/packages/python-web.scm (python-branca, python-smart-open):
* gnu/packages/python-xyz.scm (python-conda-content-trust)
(python-menuinst, python-isort, python-pyclibrary)
(python-pyclipper, python-csb43-0.10, python-orgparse)
(python-deepmerge, python-scooby, python-uuid6):
* gnu/packages/radio.scm (nanovna-saver):
* gnu/packages/sphinx.scm (python-sphinx-autodoc-typehints):
[arguments]: Remove phases setting SETUPTOOLS_SCM_PRETEND_VERSION.

* gnu/packages/python-xyz.scm (python-bagit)
[arguments]: Refactor manual 'check phase into #:test-flags.

Change-Id: I0713d6603f982a7f956d02fc3b85a384f4dd6ce4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:37 +01:00
Sharlatan Hellseher
72f7749a94 gnu: python-fakeredis: Update to 2.33.0. 
* gnu/packages/databases.scm (python-fakeredis): Update to 2.33.0.
[arguments] <test-flags>: Run more tests, skip only 4.
[propagated-inputs]: Remove python-typing-extensions; add python-valkey.

Change-Id: I05d5f3b5da3da175a180cdb71fe6078342c10653
 2026-02-07 12:28:27 +01:00
Nicolas Graves
658b97632e gnu: python-redis: Update to 7.1.0. 
* gnu/packages/databases.scm (python-redis): Update to 7.1.0.
[arguments]<#:test-flags>: Refresh them.
<#:phases>: Rename and refresh phase 'avoid-pytest-cov to
'relax-coverage-requirements.
[native-inputs]: Add python-hatchling, python-mock,
python-pytest-timeout.  Replace python-pytest-asyncio-0.23 by
python-pytest-asyncio.  Remove python-setuptools.

Change-Id: I202a4b4e413300dc2a9f25b75793367e4adcd8a5
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:27 +01:00
Nicolas Graves
66e53fb849 gnu: python-aiosqlite: Correct package. 
* gnu/packages/databases.scm (python-aiosqlite)
[native-inputs]: Add python-packaging due to sanity-check change.
[propagated-inputs]: Add forgotten python-typing-extensions.

Change-Id: Ib9422597a7758d017d4c1f193551db96791e9e5f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:21 +01:00
Andreas Enge
50ebdec2de gnu: mariadb-embedded: Change the name field to match the variable name. 
This resolves the ambiguity on the command line.

* gnu/packages/databases.scm (mariadb-embedded)[name] Change from
"mariadb" to "mariadb-embedded".

Fixes: guix/guix#5705
Change-Id: Ie86b3e86015c1349950fe36daef5dd454492d727
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:30:29 +01:00
Philippe SWARTVAGHER
664aca5c8f gnu: sqlitebrowser: Use system nlohmann-json. 
* gnu/packages/databases.scm (sqlitebrowser):
[source]: Remove bundled nlohmann-json and patch includes.
[native-inputs]: Add nlohmann-json (header-only library).

Change-Id: I80036372a51073b8f891a260d6a4531a6bd65cf8
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:25:00 +01:00
Philippe SWARTVAGHER
ce3d9e8498 gnu: sqlitebrowser: Update to 3.13.1. 
* gnu/packages/databases.scm (sqlitebrowser): Update to 3.13.1.

Change-Id: Ief8491492d96f9b45fe97c51f14094d6ef997a1d
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:24:59 +01:00
Cayetano Santos
817bdc3f61 gnu: mariadb: Fix max nproc in tests. 
* gnu/packages/databases.scm (mariadb)[arguments]: Adjust ’check phase.

Fixes guix/guix#5680

Change-Id: I602def0aca4755ae3d2c56ebf9c3bc2a9cf9c28e
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:24:54 +01:00
Sharlatan Hellseher
aa6b488cb2 gnu: Remove python-sqlalchemy-stubs. 
* gnu/packages/databases.scm (python-sqlalchemy-stubs): Delete variable.

Fixes: guix/guix#4780
Change-Id: I331c73b603386e50e8464409a1184cd953f11e0d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:24:06 +01:00
Sharlatan Hellseher
0c961fd0c9 gnu: Remove sqlcrush. 
* gnu/packages/databases.scm (sqlcrush): Delete variable.

Fixes: guix/guix#4781
Change-Id: I951801a3f23643f84cc32f97e506335f3d6da77b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:24:05 +01:00
Sharlatan Hellseher
5e5e1b95c7 gnu: Remove python-aioredis. 
* gnu/packages/databases.scm (python-aioredis): Delete variable.

Change-Id: If859740f6bb38fc42ae42df577d0a8c48d2af7c3
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:31 +01:00
Sharlatan Hellseher
1bbcad4a91 gnu: python-fastparquet: Update to 2025.12.0. 
* gnu/packages/databases.scm (python-fastparquet): Update to 2025.12.0.
[arguments] <phases>: Remove 'relax-requirements,'pretend-version, and
'build-cython-extensions; add 'remove-dependencies-on-git, 'set-version
and 'remove-local-source.
[native-inputs]: Remove python-wheel.

Change-Id: I808357310fbd78c1465d638788a3040ba2b8a452
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:15 +01:00
Sharlatan Hellseher
c70f57c702 gnu: python-tortoise-orm: Update to 0.25.3. 
* gnu/packages/databases.scm (python-tortoise-orm): Update to 0.25.3.
[arguments] <test-flags>: Skip only one test, run them in parallel.
[propagated-inputs]: Remove python-asyncmy, and python-rapidjson; add
python-anyio, python-asyncodbc, python-orjson, python-psycopg,
python-psycopg-pool, and python-pyodbc.
[native-inputs]: Remove python-ayncodbc, python-psycopg,
python-psycopg-pool, python-pyodbc, and python-poetry-core; add
python-cython, and
python-pdm-backend, python-pytest-xdist.

Change-Id: I4e2c7b8f083bd649c313c26b77c0dd2110a9689c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:49 +01:00
Sharlatan Hellseher
c5c6e88486 gnu: python-pypika-tortoise: Update to 0.6.3. 
* gnu/packages/databases.scm (python-pypika-tortoise): Update to 0.6.3.
[arguments]<test-flags>: Skip one test.
[native-inputs]: Remove python-poetry-core; add python-pdm-backend.

Change-Id: Id29435ec6f4c5962f32020e3cfaadac0911cd373
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:49 +01:00
Sharlatan Hellseher
a0ed2482e4 gnu: python-pydantic-2: Deprecate by python-pydantic. 
* gnu/packages/python-xyz.scm (python-pydantic-2): Deprecate variable.

* gnu/packages/astronomy.scm (python-czml3, python-edps, python-hvpy):
[propagated-inputs]: Remove python-pydantic-2; add python-pydantic.

* gnu/packages/cybersecurity.scm (gallia):
[inputs]: Remove python-pydantic-2; add python-pydantic.

* gnu/packages/databases.scm (python-prisma)[propagated-inputs]:
Remove python-pydantic-2; add python-pydantic.
(python-tortoise-orm, aerich)[native-inputs]: Remove python-pydantic-2;
add python-pydantic.

* gnu/packages/django.scm (python-django-ninja)[propagated-inputs]:
Remove python-pydantic-2; add python-pydantic.

* gnu/packages/finance.scm (python-schwifty)[native-inputs]: Remove
python-pydantic-2; add python-pydantic.

* gnu/packages/games.scm (tuxemon)[propagated-inputs]: Remove
python-pydantic-2; add python-pydantic.

* gnu/packages/machine-learning.scm (python-spacy, python-thinc):
[propagated-inputs]: Remove python-pydantic-2; add python-pydantic.

* gnu/packages/maths.scm (python-libensemble)[propagated-inputs]: Remove
python-pydantic-2; add python-pydantic.

* gnu/packages/protobuf.scm (python-pure-protobuf)[native-inputs]:
Remove python-pydantic-2; add python-pydantic.

* gnu/packages/python-check.scm (python-inline-snapshot)[native-inputs]:
Remove python-pydantic-2; add python-pydantic.

* gnu/packages/python-science.scm (python-iminuit):[native-inputs]:
Remove python-pydantic-2; add python-pydantic.
(python-pandera, python-vaex-core)[propagated-inputs]: Remove
python-pydantic-2; add python-pydantic.

* gnu/packages/python-web.scm: (python-cloudpathlib, python-huggingface-hub):
[native-inputs]: Remove python-pydantic-2; add python-pydantic.
(python-aws-sam-translator, python-weasel, python-openai,
python-fastapi, python-fastapi-csrf-protect,
python-fastapi-pagination-minimal, python-fastapi-pagination):
[propagated-inputs]: Remove python-pydantic-2; add python-pydantic.

* gnu/packages/python-xyz.scm: (python-safety-schemas,
python-pytoolconfig, python-pydantic-cli, python-pydantic-settings,
python-confection, python-safety)[propagated-inputs]: Remove
python-pydantic-2; add python-pydantic.
(python-deepdiff, python-lief)[native-inputs]: Remove
python-pydantic-2; add python-pydantic.

Change-Id: I20842162ae8a6c0abd54e4ef1fc676f928541184
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:18:13 +01:00
Danny Milosavljevic
a2b31e63f1 gnu: sqlitebrowser: Add Wayland. 
* gnu/packages/databases.scm (sqlitebrowser)[inputs]: Add qtwayland-5.

Change-Id: I7d1790599caf38efba539a094d3e8f29adde60e6
 2026-01-12 02:37:35 +01:00
jgart
6913fd7018 gnu: python-sqlparse: Update to 0.5.5. 
* gnu/packages/databases.scm (python-sqlparse): Update to 0.5.5.

Change-Id: I7622fba36d30541c66e4712c647401a36f63b1be
 2026-01-06 09:00:26 -05:00
Philippe SWARTVAGHER
a63e421bdf gnu: sqlitestudio: Update to 3.4.19. 
* gnu/packages/databases.scm (sqlitestudio): Update to 3.4.19.

Change-Id: Ia5aec72dc89490915f282ece04bbbeb5335978a5
Signed-off-by: jgart <jgart@dismail.de>
 2026-01-03 10:18:43 -05:00
Sharlatan Hellseher
27a79384e4 gnu: Remove apache-arrow-for-ceph. 
* gnu/packages/databases.scm (apache-arrow-for-ceph): Delete variable.

Fixes: guix/guix#4758
Change-Id: I9061a34e9dae846009a7bda57debda40ad5dab50
 2026-01-01 23:05:45 +00:00
Maxim Cournoyer
d564b1c534 gnu: Add rocksdb-for-ceph. 
* gnu/packages/databases.scm (rocksdb-for-ceph): New variable.

Change-Id: Iad01f7025c1b199a8596f7c8e57f17cad4ca07c6
 2025-12-29 10:10:13 +09:00
Nicolas Graves
785b69725b gnu: python-crate: Update to 2.0.0. 
* gnu/packages/databases.scm (python-crate): Update to 2.0.0.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:test-flags>: Ignore failing tests.
[native-inputs]: Add python-orjson, python-pytest, python-pytz,
python-setuptools, python-sqlalchemy, python-verlib2,
tzdata-for-tests.
           .
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

Change-Id: Ic5c2a0254fd9fdd96c3fab5c53e9e9de675cbf6f
 2025-12-27 19:59:51 +00:00
Nicolas Graves
7ba3dd1676 gnu: python-pyarrow: Switch to pyproject. 
* gnu/packages/databases.scm (python-pyarrow):
[build-system]: Switch to pyproject-build-system.
[arguments]<#:phases>: Keep 'build phase.
[native-inputs]: Add python-setuptools.

Change-Id: Ibcaf7988f06f6abc5a7989724984c296440db0d6
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-12-27 19:59:51 +00:00
Nicolas Graves
c03d773d86 gnu: yoyo-migrations: Update to 9.0.0. 
* gnu/packages/databases.scm (yoyo-migrations): Update to 9.0.0.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:phases>: Add phase 'start-postgresql.
[native-inputs]: Add them.

Change-Id: I4f1092436e54938b0fee10addd9a6e6dfa92721a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-12-27 19:59:51 +00:00
Nicolas Graves
d8af184753 gnu: python-psycopg-pool: Switch to pyproject. 
* gnu/packages/databases.scm (python-psycopg-pool):
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.

Change-Id: Ie891a1d87f0bf9206a26dba94a6bb562552c6a31
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-12-27 19:59:51 +00:00
Nicolas Graves
452e3a5c7e gnu: python-psycopg2: Update to 2.9.11. 
* gnu/packages/databases.scm (python-psycopg2): Update to 2.9.11.
[source]: Switch to git-fetch.
[arguments]<#:test-flags>: Drop them.

Change-Id: I13c48ccfdaaf5bb1d5631192d38259e9e1eba9ad
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-12-27 19:59:51 +00:00
Nicolas Graves
9da35d7409 gnu: python-psycopg2: Run tests and migrate to pyproject. 
* gnu/packages/databases.scm (python-psycopg2)
[build-system]: Switch to pyproject-build-system.
[arguments]<#:test-flags, #:phases>: Set them to run tests.
[native-inputs]: Add postgresql, tzdata-for-tests, python-pytest,
python-setuptools

Change-Id: I51b356a4e2d56f95aeff53f4a7a4b9c600d9744c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-12-27 19:59:51 +00:00
Nicolas Graves
ff3c2127e6 gnu: python-sqlalchemy-utils: Run tests. 
* gnu/packages/databases.scm (python-sqlalchemy-utils)[arguments]
<#:test-flags, #:phases>: Set them to run tests.
[native-inputs]: Add postgresql, tzdata-for-tests.

Change-Id: I0c5c0a170b42297044b4bfbe034db9e9e1d9352e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-12-27 19:59:50 +00:00
Nicolas Graves
659e77bbf9 gnu: python-sqlite-fts4: Switch to pyproject. 
* gnu/packages/databases.scm (python-sqlite-fts4):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.
[description]: Improve style.

Change-Id: Ibced9b5299bc460df20c4bb689af09f184a5c15a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-12-27 19:59:50 +00:00
Nicolas Graves
12d907b17d gnu: python-sqlalchemy-utils: Update to 0.42.1. 
* gnu/packages/databases.scm (python-sqlalchemy-utils): Update to 0.42.1.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.

Change-Id: I25bfc76aa073c23b14add53d409fbda56519301c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-12-27 19:59:43 +00:00
Philippe SWARTVAGHER
c1aa87625f gnu: sqlitestudio: Update to 3.4.18. 
* gnu/packages/databases.scm (sqlitestudio): Update to 3.4.18.

Change-Id: I30046ba50af96d36aae094d41622747ddbe4e838
Signed-off-by: Cayetano Santos <csantosb@inventati.org>
 2025-12-18 22:26:18 +00:00
Hugo Buddelmeijer
100454dbe8 gnu: python-databases: Update to 0.8.0. 
* gnu/packages/databases.scm (python-databases): Update to 0.8.0.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:test-flags>: Disable tests that require a database.
[native-inputs]: Add python-httpx, python-psycopg, python-pytest,
python-setuptools, and python-starlette.

Change-Id: I812d3e91fa0af6bee4df058d8563f5b0be28a3f2
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2025-12-17 11:20:20 +01:00
Hugo Buddelmeijer
86ea7a4aae gnu: python-asyncpg: Fix build. 
* gnu/packages/databases.scm (python-asyncpg): Fix build.
[arguments]<#:test-flags>: Disable failing test.
[propagated-inputs]: Remove python-async-timeout.
[native-inputs]: Remove python-wheel.

Change-Id: I7d989120dee90abd4bb40b700d2c98a8b1143e28
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2025-12-17 11:20:20 +01:00
bdunahu
7d7b8b6f68 gnu: Add sdb. 
* gnu/packages/databases.scm (sdb): New variable.

Change-Id: I199de01ffb467a3f64b48d5ae42dc5fc18cab3df
Signed-off-by: Cayetano Santos <csantosb@inventati.org>
 2025-12-14 17:28:08 +01:00
Giacomo Leidi
c425bac93d Update Giacomo's email address. 
The change was automated via:

git grep -l goodoldpaul@autistici.org |
    xargs sed -i 's/goodoldpaul@autistici.org/therewasa@fishinthecalculator.me/g'

* .mailmap: New entry.

Change-Id: I1629388334695d221647afe6a14faf61af5fe0d6
Signed-off-by: Maxim Cournoyer <maxim@guixotic.coop>
 2025-12-03 14:38:09 +09:00
Ricardo Wurmus
272cdb9acd gnu: apache-arrow: Update to 22.0.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 22.0.0.

Change-Id: I6a162171c9a454141686d93f2af00eaa6d66632f
 2025-11-29 12:19:11 +01:00
Hartmut Goebel
50b7968f79 gnu: python-sql: Update to 1.7.0. 
* gnu/packages/databases.scm (python-sql): Update to 1.7.0.

Change-Id: Ifb5a1daba79c6a065981046e01eef13f5337132c
 2025-11-27 00:02:48 +01:00
Sharlatan Hellseher
9afa48113a gnu: python-pypika: Update to 0.49.0. 
* gnu/packages/databases.scm (python-pypika): Update to 0.49.0.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-pytest and python-setuptools.

Change-Id: I3f35b622325d8a2d4c953eb0f71475303b9ee44e
 2025-11-26 21:22:04 +00:00
Sharlatan Hellseher
f2c3cd2465 gnu: apache-orc: Runs tests only on 64bit architectures. 
This blocks apache-arrow to build on i686-linux, see:
<https://ci.guix.gnu.org/build/15400469/details>.

* gnu/packages/databases.scm (apache-orc)[arguments]<tests?>: Run
tests only on 64bit architectures.

Change-Id: I7b56ebcd9e50343360464647170e4a32386f6172
 2025-11-20 01:06:41 +00:00
Nicolas Graves
f06c3cd985 gnu: python-aiosqlite: Update to 0.21.0. 
* gnu/packages/databases.scm (python-aiosqlite): Update to 0.21.0.
[source, synopsis]: Run guix style.
[arguments]: Drop <#:phases> in favor of <#:test-backend>.
[native-inputs]: Remove python-coverage, python-mypy.

Change-Id: I2a9a66a1a1386ff44b440c18dac8345bb136e7a2
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-11-20 01:06:36 +00:00
Sughosha
c6a07f70e6 gnu: qcustomplot: Switch to Qt6. 
* gnu/packages/qt.scm (qcustomplot)[inputs]: Replace qtbase-5 with qtbase.
(qcustomplot-qt5): New variable.
* gnu/packages/databases.scm (sqlitebrowser)[inputs]: Replace qcustomplot with
qcustomplot-qt5.
* gnu/packages/radio.scm (wfview)[inputs]: Replace qcustomplot with
qcustomplot-qt5.

Change-Id: I781fb0f94b341c039d4f192c24c797e64e549426
 2025-11-12 11:28:26 +05:30
Sharlatan Hellseher
3699ede353 gnu: duckdb: Move to duckdb. 
* gnu/packages/databases.scm (duckdb): Move from here ...
* gnu/packages/duckdb.scm: ... to here.

Change-Id: Ie683a1d4d93d556d5d923830ca0132738463c0a8
 2025-11-11 20:18:00 +00:00
Sharlatan Hellseher
79335ff39d gnu: Remove python-sphinxcontrib-asyncio. 
Not compatible with Sphinx 6, where we have 7 as default, fails to build
and it's a leaf package.
See: <https://github.com/aio-libs/sphinxcontrib-asyncio/issues/15>.

* gnu/packages/databases.scm (python-sphinxcontrib-asyncio): Delete variable.

Fixes: guix/guix#3377
Change-Id: Ic77a45783a5e16842b0a3ff7cef59458f3d77cf7
 2025-11-09 20:01:47 +00:00
Jake Coble
acda793e1e gnu: Add python-psycopg2cffi. 
* gnu/packages/databases.scm (python-psycopg2cffi): New variable.

Change-Id: Ifdc8eb44e7bb56cc00354eb919e36bc79b4a009a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-11-05 16:40:29 +00:00
Nicolas Graves
49b2fd4f06 gnu: datasette: Update to 1.0a19. 
* gnu/packages/databases.scm (datasette): Update to 1.0a19.
[arguments]<#:test-flags>: Ignore python-black tests.
<#:phases>: Add phase 'relax-requirements.
[native-inputs]: Remove python-black, python-pip, python-wheel.
Replace python-pytest-asyncio by python-pytest-asyncio-0.26.

Change-Id: I307b5648637fa6787aba50bffb8b1caea1e6d1a2
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-10-28 09:26:59 +00:00
Sharlatan Hellseher
3bc53e1913 gnu: mycli: Update to 1.37.1. 
* gnu/packages/databases.scm (mycli): Update to 1.37.1.
[build-sytem]: Switch to pypproject-build-sytem.
[propagated-inputs]: Remove python-click; add python-click-7,
python-cryptography, python-pyfzf, python-sqlglot, and python-sqlglotrs.
[native-inputs]: Add python-setuptools and python-setuptools-scm.

Change-Id: Ia62326e1ed82a2ca564ef7b9f095fb00e7e742a1
 2025-10-25 10:49:04 +01:00
Sharlatan Hellseher
cbad86a985 gnu: python-cython-3: Mark as deprecated. 
This is a followup to 941b6ff1c1 commit.

Replace all python-cython-3 occurrences with python-cython.

* gnu/packages/python-xyz.scm (python-cython-3): Deprecate variable.

* gnu/packages/algebra.scm (python-fpylll, python-flint)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/astronomy.scm (python-astropy, python-astroscrappy,
python-halotools, python-healpy, python-libstempo, python-lofar-h5plot,
python-losoto, python-photutils, python-pyxsim, python-regions,
python-reproject, python-sncosmo, python-sndata, python-stcal,
python-yt)[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/bioinformatics.scm (macs-3, python-pyrodigal):
[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/build-tools.scm (meson-python)[propagated-inputs]: Remove
python-cython-3; add python-cython.
[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/databases.scm: (python-adbc-driver-manager,
python-psycopg, python-pyarrow)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/finance.scm (python-ta-lib)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/game-development.scm (python-pygame-ce)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/geo.scm (python-pyogrio, python-cf-units)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/machine-learning.scm: (python-scikit-learn,
python-opentsne)[native-inputs]: Remove python-cython-3; add
python-cython.

* gnu/packages/maths.scm: (python-cylp, python-petsc4py,
python-primecountpy, python-slepc4py)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/python-check.scm (python-line-profiler)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/python-compression.scm (python-blosc2)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/python-graphics.scm (python-vispy)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/python-science.scm: (python-pykdtree, python-qutip,
python-scikit-misc, python-scikit-surprise, python-pandas-2,
python-vaex-core)[native-inputs]: Remove python-cython-3; add
python-cython.

* gnu/packages/python-web.scm: (python-aiohttp, python-falcon,
python-yarl, python-uvloop)[native-inputs]: Remove python-cython-3; add
python-cython.

* gnu/packages/python-xyz.scm: (python-logbook, python-netcdf4,
python-pyyaml, python-propcache, python-pywavelets, python-symengine,
python-cysignals, python-pyemd, python-rbfly)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/sagemath.scm: (python-cypari2, python-pplpy, sage)
[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/sphinx.scm (python-sphinx)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/statistics.scm: (python-statsmodels, python-pyreadstat):
[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/tor.scm (onionshare-cli)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/xorg.scm (xpra)[native-inputs]: Remove python-cython-3;
add python-cython.

Change-Id: I38038d2ab18e6a7b549070083d6e4c5beb8b0293
 2025-10-24 11:05:28 +01:00
Ludovic Courtès
9fcfb93944 gnu: Use ‘define-deprecated-package’ for deprecated packages. 
Use ‘define-deprecated-package’ instead of (define x (deprecated-package …))
throughout gnu/packages/*.scm.

Change-Id: I4e176da9ac660327489dab256ca4d12c4e78fe8d
 2025-10-23 19:35:06 +02:00
Sharlatan Hellseher
afb9c65cf3 gnu: aerich: Update to 0.9.2. 
As it's a final program all propagated inputs moved to inputs.

* gnu/packages/databases.scm (aerich): Update to 0.9.2.
[arguments] <test-flags>: Skip one tests searching for "uvx".
[inputs]: Add python-anyio, python-asyncclick, python-dictdiffer,
python-tortoise-orm, python-aiomysql, python-asyncmy, python-asyncpg,
python-psycopg, and python-tomli-w.
[propagated-inputs]: Remove python-asyncclick, python-asyncmy,
python-asyncpg, python-dictdiffer, python-pydantic, python-tomli-w, and
python-tortoise-orm.
[native-inputs]: Remove python-poetry-core; add python-pdm-backend,
python-pydantic-2, python-pydantic-settings, and python-tortoise-vector.

Change-Id: I9bcb13f0fc9f70428b5f794893d1a4bddf611a5d
 2025-10-16 10:36:54 +01:00
Sharlatan Hellseher
7403213c91 gnu: Add python-tortoise-vector. 
* gnu/packages/databases.scm (python-tortoise-vector): New variable.

Change-Id: Ib6646bc813fe04ba6e55b2b78dff373d2b52268e
 2025-10-16 10:36:54 +01:00
Simen Endsjø
ba362b967d gnu: valkey-8: Update to 8.1.4. 
* gnu/packages/databases.scm (valkey-8): Update to 8.1.4.

Change-Id: Ied4262343078a36dfc4871861a1adf4cc7edcb18
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2025-10-14 16:35:55 +02:00