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859 Commits

Author SHA1 Message Date
Marius Bakke
b029be2ee0 Merge branch 'master' into core-updates-frozen 
Conflicts:
	gnu/packages/bioinformatics.scm
	gnu/packages/cmake.scm
	gnu/packages/curl.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/gpodder.scm
	gnu/packages/music.scm
	gnu/packages/patches/glibc-bootstrap-system.patch
	gnu/packages/python-xyz.scm
	gnu/packages/shells.scm
	gnu/packages/statistics.scm
 2021-07-29 22:34:57 +02:00
Ricardo Wurmus
ef61998524 gnu: apache-arrow: Update to 5.0.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 5.0.0.
 2021-07-29 17:11:08 +02:00
Ricardo Wurmus
532cfc5bd2 gnu: python-pyarrow: Fix parquet support. 
Co-authored-by: Phil Beadling <phil@beadling.co.uk>.

* gnu/packages/databases.scm (python-pyarrow)[arguments]: Add phases
patch-cmake-variables, patch-parquet-library, and set-PYARROW_WITH_PARQUET.
[propagated-inputs]: Add "include" output of apache-arrow package.
 2021-07-28 20:31:06 +02:00
Alexandre Hannud Abdo
b8e7b284fc gnu: Add sequeler. 
* gnu/packages/databases.scm (sequeler): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-07-20 12:01:20 +03:00
Ludovic Courtès
0e47fcced4 Merge branch 'master' into core-updates 2021-07-18 19:50:01 +02:00
Tobias Geerinckx-Rice
f369695000 gnu: perl-sql-splitstatement: Update to 1.00023. 
* gnu/packages/databases.scm (perl-sql-splitstatement): Update to 1.00023.
[native-inputs]: Add perl-test-differences and perl-test-script.
 2021-07-02 03:05:58 +02:00
Tobias Geerinckx-Rice
0eb0fef346 gnu: perl-db-file: Update to 1.856. 
* gnu/packages/databases.scm (perl-db-file): Update to 1.856.
 2021-07-02 03:05:58 +02:00
Tobias Geerinckx-Rice
3e29bf169f gnu: virtuoso-ose: Update to 7.2.6. 
* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.6.
[source]: Get it from SourceForge.
[inputs]: Use the default OpenSSL version.
 2021-06-30 21:34:28 +02:00
zimoun
1f2ea75aed gnu: python2-sqlparse: Remove package. 
* gnu/packages/databases.scm (python2-sqlparse): Remove variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-06-29 12:37:33 +02:00
Tobias Geerinckx-Rice
7f86f42671 gnu: mariadb-connector-c: Update to 3.1.13. 
* gnu/packages/databases.scm (mariadb-connector-c): Update to 3.1.13.
 2021-06-25 19:02:35 +02:00
Tobias Geerinckx-Rice
9dea3f101f Merge branch 'master' into core-updates 
Conflicts:
	gnu/packages/cups.scm
	gnu/packages/python-web.scm
	gnu/packages/web.scm
	guix/build/maven/pom.scm
 2021-06-23 18:45:21 +02:00
Ricardo Wurmus
bf0f9dd051 gnu: apache-arrow: Update to 4.0.1. 
* gnu/packages/databases.scm (apache-arrow): Update to 4.0.1.
[arguments]: Remove trailing boolean; ensure that xsimd is not downloaded and
built anew.
[inputs]: Add xsimd.
 2021-06-21 12:17:23 +02:00
Marius Bakke
6f9a80b331 Merge branch 'master' into core-updates 
Note: this merge actually changes the 'curl' and 'python-attrs' derivations,
as part of solving caf4a7a277 and
12964df69a respectively.

4604d43c0e (gnu: gnutls@3.6.16: Fix cross-compilation.) was ignored because it
cannot currently be tested.

 Conflicts:
	gnu/local.mk
	gnu/packages/aidc.scm
	gnu/packages/boost.scm
	gnu/packages/curl.scm
	gnu/packages/nettle.scm
	gnu/packages/networking.scm
	gnu/packages/python-xyz.scm
	gnu/packages/tls.scm
 2021-06-19 17:38:47 +02:00
Ricardo Wurmus
9e220f099d gnu: Add nanodbc-for-irods. 
* gnu/packages/databases.scm (nanodbc-for-irods): New variable.
 2021-06-14 16:05:07 +02:00
Marius Bakke
b54bfa4ec4 gnu: postgresql: Remove replacement. 
* gnu/packages/databases.scm (postgresql-13): Update to 13.3.
[replacement]: Remove.
(postgresql-13.3): Remove variable.
 2021-06-13 01:00:46 +02:00
zimoun
5ce19343ca gnu: python2-orator: Remove package. 
* gnu/packages/database.scm (python2-orator): Remove variable.
(python-orator)[properties]: Remove field.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-06-08 13:10:27 -04:00
Marius Bakke
8d59c262ad Merge branch 'master' into core-updates 
Conflicts:
	gnu/local.mk
	gnu/packages/algebra.scm
	gnu/packages/bioinformatics.scm
	gnu/packages/curl.scm
	gnu/packages/docbook.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/maths.scm
	gnu/packages/plotutils.scm
	gnu/packages/python-web.scm
	gnu/packages/python-xyz.scm
	gnu/packages/radio.scm
	gnu/packages/readline.scm
	gnu/packages/tls.scm
	gnu/packages/xml.scm
	gnu/packages/xorg.scm
 2021-06-06 21:16:32 +02:00
Simon Streit
841edfa491 gnu: redis: Update to 6.2.4 [security fixes]. 
Fixes CVE-2021-29477.

* gnu/packages/databases.scm (redis): Update to 6.2.4.
[arguments]: Disable the 'integration/failover' test.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-06-02 00:54:39 -04:00
Tobias Geerinckx-Rice
36d2e48c30 gnu: lmdb: Update to 0.9.29. 
* gnu/packages/databases.scm (lmdb): Update to 0.9.29.
 2021-05-23 22:39:15 +02:00
Marius Bakke
4ea6852c5f Merge branch 'master' into core-updates 2021-05-22 17:21:57 +02:00
Efraim Flashner
f9fc3373e7 gnu: perl-dbd-pg: Update to 3.14.2. 
* gnu/packages/databases.scm (perl-dbd-pg): Update to 3.14.2.
 2021-05-19 23:01:26 +03:00
Leo Famulari
1b7ea563cd gnu: PostgreSQL 9: Update to 9.6.22 [fixes CVE-2021-{32027,32028,32029}]. 
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.22.
 2021-05-17 15:05:18 -04:00
Leo Famulari
16da170f19 gnu: PostgreSQL 10: Update to 10.17 [fixes CVE-2021-{32027,32028,32029}]. 
* gnu/packages/databases.scm (postgresql-10): Update to 10.17.
 2021-05-17 15:05:18 -04:00
Leo Famulari
49a99a744a gnu: PostgreSQL 11: Update to 11.12 [fixes CVE-2021-{32027,32028,32029}]. 
* gnu/packages/databases.scm (postgresql-11): Update to 11.12.
 2021-05-17 15:05:18 -04:00
Leo Famulari
ef221c8b71 gnu: PostgreSQL: Update to 13.3 [fixes CVE-2021-{32027,32028,32029}]. 
* gnu/packages/databases.scm (postgresql-13)[replacement]: Use postgresql-13.3.
(postgresql-13.2): Replace with ...
(postgresql-13.3): ... new variable.
 2021-05-17 15:05:14 -04:00
Ludovic Courtès
25487c3fe6 Merge branch 'master' into core-updates 2021-05-15 22:55:24 +02:00
BonfaceKilz
f8a4724c10 gnu: Add python-sqlalchemy-stubs. 
* gnu/packages/databases.scm (python-sqlalchemy-stubs): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2021-05-12 16:12:24 +05:30
Marius Bakke
1539af46d0 gnu: CMake: Update to 3.20.2. 
* gnu/packages/cmake.scm (%common-disabled-tests): Don't disable BootstrapTest.
(cmake-bootstrap): Update to 3.20.2.
[source](modules, snippet): Move from here ...
(cmake-minimal)[source]: ... to here.
* gnu/packages/patches/mariadb-cmake-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/databases.scm (mariadb)[source](patches): Add it.
 2021-05-09 23:43:32 +02:00
Marius Bakke
a9517c4f59 gnu: PostgreSQL: Remove replacement package. 
* gnu/packages/databases.scm (postgresql-13): Update to 13.2.
[replacement]: Remove.
(postgresql-13.2): Remove variable.
 2021-05-09 23:12:48 +02:00
Marius Bakke
fa3043fc8c gnu: MariaDB: Incorporate grafted changes. 
* gnu/packages/databases.scm (mariadb)[replacement]: Remove.
[source](patches): New field.
(mariadb/fixed): Remove variable.
 2021-05-09 23:12:48 +02:00
Marius Bakke
f034264204 Merge branch 'master' into core-updates 
Conflicts:
	gnu/local.mk
	gnu/packages/bioinformatics.scm
	gnu/packages/django.scm
	gnu/packages/gtk.scm
	gnu/packages/llvm.scm
	gnu/packages/python-web.scm
	gnu/packages/python.scm
	gnu/packages/tex.scm
	guix/build-system/asdf.scm
	guix/build/emacs-build-system.scm
	guix/profiles.scm
 2021-05-09 21:29:46 +02:00
Marius Bakke
151f1720e3 gnu: python-sqlparse: Remove unnecessary runtime dependencies. 
* gnu/packages/databases.scm (python-sqlparse)[arguments]: Override 'wrap'
phase.
 2021-05-05 23:48:20 +02:00
Marius Bakke
314f96421e gnu: python-sqlparse: Update to 0.4.1. 
* gnu/packages/databases.scm (python-sqlparse): Update to 0.4.1.
 2021-05-05 23:48:19 +02:00
Tobias Geerinckx-Rice
1ba3df1872 gnu: soci: Update to 4.0.2. 
* gnu/packages/databases.scm (soci): Update to 4.0.2.
 2021-05-01 11:29:12 +02:00
Pjotr Prins
04ab609b13 gnu: Add ruby-redis. 
* gnu/packages/databases.scm (ruby-redis): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-04-26 14:42:13 +03:00
Ricardo Wurmus
34928cc43c gnu: nanodbc: Build shared libraries. 
* gnu/packages/databases.scm (nanodbc)[arguments]: Build shared libraries.
 2021-04-23 16:07:54 +02:00
Ricardo Wurmus
2be32ecc74 gnu: Add nanodbc. 
* gnu/packages/databases.scm (nanodbc): New variable.
 2021-04-20 16:40:10 +02:00
Tobias Geerinckx-Rice
bf5f75856e gnu: freetds: Update to 1.2.20. 
* gnu/packages/databases.scm (freetds): Update to 1.2.20.
 2021-04-19 19:23:00 +02:00
Efraim Flashner
fcc39864db Merge remote-tracking branch 'origin/master' into core-updates 
Conflicts:
	gnu/local.mk
	gnu/packages/boost.scm
	gnu/packages/chez.scm
	gnu/packages/compression.scm
	gnu/packages/crates-io.scm
	gnu/packages/docbook.scm
	gnu/packages/engineering.scm
	gnu/packages/gcc.scm
	gnu/packages/gl.scm
	gnu/packages/gtk.scm
	gnu/packages/nettle.scm
	gnu/packages/python-check.scm
	gnu/packages/python-xyz.scm
	gnu/packages/radio.scm
	gnu/packages/rust.scm
	gnu/packages/sqlite.scm
	guix/build-system/node.scm
 2021-04-16 14:39:48 +03:00
Tobias Geerinckx-Rice
0f0c9d2b0f gnu: freetds: Update to 1.2.19. 
* gnu/packages/databases.scm (freetds): Update to 1.2.19.
 2021-04-11 00:03:46 +02:00
methuselah-0
43c55856c8 gnu: Add galera. 
* gnu/packages/databases.scm (galera): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-04-08 23:28:01 +02:00
Lars-Dominik Braun
14392c7789 gnu: python-tortoise-orm: Fix dependencies. 
* gnu/packages/databases.scm (python-tortoise-orm) [propagated-inputs]:
Add missing dependency.
[arguments]: Relax pytz version requirement, remove iso8601 requirement.
 2021-04-06 10:57:19 +02:00
Raghav Gururajan
ac6e19b082 gnu: soci: Propagate inputs. 
* gnu/packages/databases.scm (soci)[inputs]: Move to...
[propagated-inputs]: ... here.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-03-27 23:03:13 -04:00
Léo Le Bouter
52c8d07a4f gnu: mariadb: Fix CVE-2021-27928. 
* gnu/packages/patches/mariadb-CVE-2021-27928.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/databases.scm (mariadb/fixed): New variable. Apply patch.
(mariadb)[replacement]: Graft.
 2021-03-26 02:21:51 +01:00
Efraim Flashner
2aab587f84 Merge remote-tracking branch 'origin/master' into core-updates 2021-03-24 20:50:44 +02:00
zimoun
c74c4377b3 gnu: python2-rq: Remove package. 
* gnu/packages/databases.scm (python2-rq): Delete.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-03-23 21:38:05 -04:00
Maxim Cournoyer
9bab0950f7 gnu: libmemcached: Disable test suite. 
* gnu/packages/databases.scm (libmemcached): Disable test suite.  Removing
trailing #t.
[phases]{fix-configure}: Remove useless group in pattern.
{disable-failing-tests}: Remove phase.
{build-and-install-html-doc}: Order after the build phase.
[home-page]: Please 'guix lint'.

Reported-by: Simon Tournier <zimon.toutoune@gmail.com>
 2021-03-16 07:46:20 -04:00
Léo Le Bouter
097cf21d1d gnu: Remove MongoDB. 
mongodb 3.4.10 has unpatched CVEs and mongodb 3.4.24 has some files in the
release tarball under the SSPL, therefore we cannot provide mongodb while
upholding to good security standards.

It turns out feff80cec3 was right since while
the main license file wasnt altered to SSPL, some files in the tree contain
SSPL headers.

* gnu/packages/databases.scm (go-gopkg.in-mgo.v2): Remove.
* gnu/packages/databases.scm (mongo-tools): Remove.
* doc/guix.texi (mongodb-service-type): Remove.
* gnu/tests/databases.scm (%test-mongodb, %mongodb-os, run-mongodb-test):
Remove.
* gnu/services/databases.scm (mongodb-configuration, mongodb-configuration?,
mongodb-configuration-mongodb, mongodb-configuration-config-file,
mongodb-configuration-data-directory, mongodb-service-type,
%default-mongodb-configuration-file, %mongodb-accounts, mongodb-activation,
mongodb-shepherd-service): Remove.
* gnu/packages/databases.scm (mongodb): Remove.
 2021-03-16 11:05:24 +01:00
Efraim Flashner
aa983626a2 gnu: mongodb: Update comment about package license. 
* gnu/packages/databases.scm (mongodb): Adjust the comment about the
licensing status of the package, there are still older branches
receiving updates under the AGPL license.
 2021-03-11 23:26:01 +02:00
Efraim Flashner
2f9132e2e0 Revert "Revert "gnu: mongodb: Update to 3.4.24 [security fixes]."" 
This reverts commit feff80cec3.

I was mistaken, there are still branches of mongodb which are still
licensed under the AGPL3
 2021-03-11 23:23:00 +02:00