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Commit Graph

3026 Commits

Author SHA1 Message Date
Arun Isaac
0a90bea34d gnu: linkchecker: Update to 10.0.1.
* gnu/packages/web.scm (linkchecker): Update to 10.0.1.
[source]: Remove patches.
[inputs]: Add python-beautifulsoup4. Replace python2-dnspython-1.16,
python2-pyxdg and python2-requests with python-dnspython, python-pyxdg and
python-requests respectively.
[native-inputs]: Replace python2-pytest, python2-miniboa and
python2-parameterized with python-pytest, python-miniboa and
python-parameterized respectively.
[arguments]: Use python 3. Replace check phase instead of deleting the
standard phase and adding a custom one. Use add-installed-pythonpath instead
of setting PYTHONPATH directly. Support disabling of tests with tests?.
[home-page]: Update URI.
* gnu/packages/patches/linkchecker-tests-require-network.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
2021-06-20 00:24:11 +05:30
Marius Bakke
dece03e2b9 gnu: Remove bsdiff traces.
This is a follow-up to 373c7b5791.

* gnu/packages/patches/bsdiff-CVE-2014-9862.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-06-19 17:17:02 +02:00
Marius Bakke
657aaa7be4 gnu: efivar: Adjust for GCC 10.
* gnu/packages/patches/efivar-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/linux.scm (efivar)[source](patches, modules, snippet): New
fields.
[arguments]: Use CC-FOR-TARGET while at it.
2021-06-19 17:09:51 +02:00
Marius Bakke
fbee3e134b gnu: jfsutils: Adjust for GCC 10.
* gnu/packages/patches/jfsutils-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/file-systems.scm (jfsutils)[source](patches): Add it.
2021-06-19 17:09:51 +02:00
Marius Bakke
e4d5b509fe gnu: isc-dhcp: Adjust for GCC 10.
* gnu/packages/patches/isc-dhcp-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/admin.scm (isc-dhcp)[source](patches): New field.
2021-06-19 17:09:51 +02:00
Marius Bakke
5b6d264f12 gnu: ath9k-htc-firmware: Adjust for GCC 10.
* gnu/packages/patches/ath9k-htc-firmware-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[source](patches): Add it.
2021-06-19 17:09:51 +02:00
Marius Bakke
2b2ecbace4 gnu: QEMU: Adjust for Sphinx 4.0.
* gnu/packages/patches/qemu-sphinx-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (qemu)[source](patches): Add it.
2021-06-19 17:09:51 +02:00
Ludovic Courtès
caf4a7a277 gnu: curl@7.77.0: Provide a correct TLS priority string.
Fixes <https://bugs.gnu.org/49035>.

* gnu/packages/patches/curl-7.77-tls-priority-string.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/curl.scm (curl-7.77.0)[source]: Use it.
2021-06-18 17:40:10 +02:00
Boris A. Dekshteyn
624a6b60b5 gnu: inkscape: Update to version 1.1.
* gnu/packages/patches/inkscape-1.1-fix-build-witch-gcc7.5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/inkscape.scm (inkscape-1.0) Rename to inkscape-1.1.
* gnu/packages/inkscape.scm (inkscape-1.1) Update to version 1.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-18 13:12:17 +02:00
Brice Waegeneire
db87a223fe gnu: brightnessctl: Add elogind support.
* gnu/packages/patches/brightnessctl-elogind-support.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (brightnessctl)[source]: Apply it.
[make-flags]: Enable logind support.
[native-inputs]: Add pkg-config.
[inputs]: Add elogind.
2021-06-17 07:27:45 +02:00
Leo Famulari
e26efac68c gnu: HexChat: Add Libera Chat to the list of networks.
* gnu/packages/patches/hexchat-add-libera-chat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (hexchat)[source]: Use it.
2021-06-16 12:40:17 -04:00
Nicolas Goaziou
ae31d80d00 gnu: Add rust-ndarray-0.13.
* gnu/packages/crates-io.scm (rust-ndarray-0.13): New variable.
(rust-ndarray-0.12): Inherit from above.
* gnu/packages/patches/rust-ndarray-0.13-remove-blas-src.patch: New file.
* gnu/local.mk: Register new file.
2021-06-16 12:52:46 +02:00
Tobias Geerinckx-Rice
e7aac78ee9 gnu: tor: Update to 0.4.6.5.
* gnu/packages/tor.scm (tor): Update to 0.4.6.5.
[source]: Add a patch to fix building with GCC 7.
* gnu/packages/patches/tor-fix-build-with-gcc-7.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-06-14 23:21:16 +02:00
Carl Dong
83d9e2ee56 gnu: gcc-8: Make static libs reproducible
This fixes the nonreproducibility in gcc documented here:
https://reproducible-builds.org/docs/archives/#gnu-libtool

* gnu/packages/patches/gcc-8-sort-libtool-find-output.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gcc.scm (gcc-8)[source]: Apply it.
2021-06-14 12:29:11 -04:00
Ricardo Wurmus
b2f0271c64 gnu: Add irods.
* gnu/packages/irods.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2021-06-14 16:35:06 +02:00
Mark H Weaver
3abaca2aae gnu: nettle-3.5: Add replacement to fix CVE-2021-3580 et al.
* gnu/packages/patches/nettle-3.5-check-_pkcs1_sec_decrypt-msg-len.patch,
gnu/packages/patches/nettle-3.5-CVE-2021-3580-pt1.patch,
gnu/packages/patches/nettle-3.5-CVE-2021-3580-pt2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/nettle.scm (nettle)[replacement]: New field.
(nettle-3.5/fixed): New variable.
2021-06-14 03:30:03 -04:00
Leo Famulari
ee48e784b9 gnu: connman: Fix CVE-2021-33833.
* gnu/packages/patches/connman-CVE-2021-33833.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/connman.scm (connman)[source]: Use it.
2021-06-13 14:45:19 -04:00
Marius Bakke
628a6c51d4 gnu: QEMU: Fix compatibility with Meson 0.58.
* gnu/packages/patches/qemu-meson-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (qemu)[source](patches): Add it.
2021-06-13 15:34:06 +02:00
Marius Bakke
84b238c8f2 gnu: libcacard: Update to 2.8.0.
* gnu/packages/patches/libcacard-unknown-variable.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/spice.scm (libcacard): Update to 2.8.0.
[source](patches): New field.
[arguments]: Remove trailing #t.
2021-06-13 15:34:02 +02:00
Tobias Geerinckx-Rice
2d115ea7ed gnu: grub: Update to 2.06.
[source]: Remove upstreamed patches.
* gnu/packages/patches/grub-setup-root.patch: Update patch.
* gnu/packages/patches/grub-verifiers-Blocklist-fallout-cleanup.patch,
gnu/packages/patches/grub-cross-system-i686.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2021-06-12 20:58:16 +02:00
Ludovic Courtès
9178566954 gnu: polkit: Add replacement for CVE-2021-3560.
* gnu/packages/patches/polkit-CVE-2021-3560.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/polkit.scm (polkit/fixed): New variable.
(polkit)[replacement]: New field.
2021-06-08 23:28:04 +02:00
Lars-Dominik Braun
dbe607925a gnu: xpra: Update to 4.2.
Fixes <https://issues.guix.gnu.org/issue/48890>.

* gnu/packages/xorg.scm (xpra): Update to 4.2.
[source]: Switch to ".tar.gz" archive and update patch file.
[native-inputs]: Add pandoc.
[arguments]: Adjust custom 'fix-paths phase for changes in source.
* gnu/packages/patches/xpra-4.2-systemd-run.patch: Adapt to new version
and rename file.
* gnu/local.mk (dist_patch_DATA): Rename file.

Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
2021-06-07 09:33:57 +02:00
Efraim Flashner
b65c02e2d3 gnu: freebayes: Update to 1.3.5.
* gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.5.
[source]: Remove patch.
[arguments]: Adjust custom 'patch-source phase for changes in source.
[inputs]: Remove zlib.
* gnu/packages/patches/freebayes-devendor-deps.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-06 12:13:28 +03:00
Tobias Geerinckx-Rice
bdd2970c08 gnu: wgetpaste: Update to 2.32.
* gnu/packages/wget.scm (wgetpaste): Update to 2.32.
[source]: Remove patch.
* gnu/packages/patches/wgetpaste-update-bpaste.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-05 19:14:15 +02:00
Carl Dong
20d9535e1b gnu: nsis: Respect SOURCE-DATE-EPOCH for reproducibility
* gnu/packages/patches/nsis-source-date-epoch.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/installers.scm (make-nsis)[source]: Apply it.
2021-06-05 11:21:11 -04:00
Tobias Geerinckx-Rice
e348436589 gnu: amule: Update to 2.3.3.
* gnu/packages/networking.scm (amule): Update to 2.3.3.
[source]: Remove patch.
* gnu/packages/patches/amule-crypto-6.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-03 18:23:39 +02:00
Efraim Flashner
0f6902ea79 gnu: julia-jllwrappers: Move to (gnu packages julia-jll).
* gnu/packages/julia-xyz.scm (julia-jlwrappers): Move to ...
* gnu/packages/julia-jll.scm: ... here.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register julia-jll.scm
2021-05-30 12:55:48 +03:00
Arun Isaac
395e20ed08 gnu: Register gnu/services/ci.scm and gnu/tests/ci.scm.
This is a follow-up to commit eda4bb4f16.

* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/services/ci.scm and
gnu/tests/ci.scm.
2021-05-29 23:47:35 +05:30
Ricardo Wurmus
e3cde9aaf8 gnu: Add mosaicatcher.
* gnu/packages/patches/mosaicatcher-unbundle-htslib.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bioinformatics.scm (mosaicatcher): New variable.
2021-05-29 07:26:15 +02:00
Tobias Geerinckx-Rice
32acea79fa gnu: lksctp-tools: Update to 1.0.19.
* gnu/packages/networking.scm (lksctp-tools): Update to 1.0.19.
[source]: Remove patch.
* gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-27 18:20:36 +02:00
Efraim Flashner
36a90d0637 gnu: minimap2: Update to 2.18.
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.18.
[source]: Remove patch.
* gnu/packages/patches/minimap2-aarch64-support.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-26 15:22:10 +03:00
Alexandr Vityazev
3c52c96ca2 gnu: Remove unnecessary patches for emacs-geiser.
* gnu/packages/patches/emacs-geiser-autoload-activate-implementation.patch:
* gnu/packages/patches/emacs-geiser-guile-auto-activate.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Apply file removal.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-05-25 11:25:00 +02:00
Marius Bakke
d4ffa96302 gnu: autotrace: Prepare for GLib 2.68 and later.
* gnu/packages/patches/autotrace-glib-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/graphics.scm (autotrace)[source](patches): New field.
2021-05-22 17:14:17 +02:00
Marius Bakke
d58e2f2723 gnu: libblockdev: Prepare for GLib 2.58.
* gnu/packages/patches/libblockdev-glib-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/disk.scm (libblockdev)[source](patches): New field.
2021-05-22 16:04:59 +02:00
Marius Bakke
404feffa30 gnu: ucx: Restore (and adapt) ioctl fallback patch.
This is a followup to 4ebd4a58ce which
removed the patch, but it was still necessary for some dependents.

* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/fabric-management.scm (ucx)[source](patches): New field.
2021-05-22 16:04:59 +02:00
Eric Bavier
a1a7a33b17 gnu: pinball: Update to 3.1.20201218.
* gnu/packages/games.scm (pinball): Update to 3.1.20201218.
[source]: Tarballs no longer published on sourceforge, so use git-fetch.
[native-inputs]: New field for bootstrapping inputs.
[inputs]: Add libltdl.
[arguments]: Add custom 'bootstrap' phase.
* gnu/packages/patches/pinball-system-ltdl.patch: Adjust to latest source.
* gnu/packages/patches/pinball-const-fix.patch,
gnu/packages/patches/pinball-cstddef.patch,
gnu/packages/patches/pinball-missing-separators.patch,
gnu/packages/patches/pinball-src-deps.patch: Delete upstreamed patches.
* gnu/local.mk (dist_patch_DATA): Remove them.
2021-05-21 22:37:54 -05:00
David Larsson
b58efbc661 gnu: Add libxml2-xpath0.
* gnu/packages/patches/libxml2-xpath0-Add-option-xpath0.patch: New file...
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/xml.scm (libxml2-xpath0): New variable.

Signed-off-by: Marius Bakke <marius@gnu.org>
2021-05-18 22:23:49 +02:00
Marius Bakke
4ebd4a58ce gnu: ucx: Update to 1.9.0.
* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/fabric-management.scm (ucx): Update to 1.9.0.
[source](patches): Remove.
2021-05-18 22:23:48 +02:00
Tobias Geerinckx-Rice
8d5986a503 gnu: rxvt-unicode: Update to 9.26.
* gnu/packages/xdisorg.scm (rxvt-unicode): Update to 9.26.
[source]: Remove upstreamed patch.
* gnu/packages/patches/rxvt-unicode-escape-sequences.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-18 16:37:20 +02:00
Maxim Cournoyer
0ac95b4490 gnu: disarchive: Fix build when cross-compiling.
This follows commit 0b1f70d1a7, which inadvertently broke the build of Guix
for i586-pc-gnu (Hurd).

* gnu/packages/patches/disarchive-cross-compilation.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/backup.scm (disarchive)[source]: Apply it.
[phases]{delete-configure}: New phase.
[native-inputs]: Add guile-3.0 and guile-gcrypt.
2021-05-17 23:27:40 -04:00
Xinglu Chen
ae0882bbd6 gnu: mercurial: Patch to make it read HGEXTENSIONPATH.
This will make Mercurial be able to find third-party extensions installed with
Guix, without having to set PYTHONPATH.

* gnu/packages/patches/mercurial-hg-extension-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register the patch.
* gnu/packages/version-control.scm (mercurial)[origin](patches): Apply the
patch.
[native-search-paths]: Add HGEXTENSIONPATH.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-16 23:28:11 +02:00
Leo Famulari
7c4c781aa4 gnu: Graphviz: Fix CVE-2020-18032.
* gnu/packages/patches/graphviz-CVE-2020-18032.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/graphviz.scm (graphviz)[replacement]: New field.
(graphviz/fixed): New variable.
2021-05-15 17:04:01 -04:00
Tobias Geerinckx-Rice
0cbc8357b3 gnu: hplip: Update to 3.21.4.
* gnu/packages/cups.scm (hplip): Update to 3.21.4.
[source]: Remove fussy patch.  Replace it with an short snippet
substitution and...
[arguments]: ...the new "--disable-imageProcessor-build" configure flag.
* gnu/packages/patches/hplip-remove-imageprocessor.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-13 16:50:49 +02:00
Tobias Geerinckx-Rice
bd1c5fe46b gnu: snappy: Update to 1.1.9.
* gnu/packages/compression.scm (snappy): Update to 1.1.9.
[source]: Add another patch.
[arguments]: Add new #:configure-flags and an
'unpack-third_party-subprojects phase.
[native-inputs]: Add the sources for benchmark and googletests.
* gnu/packages/patches/snappy-add-inline-for-GCC.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-05-13 00:32:21 +02:00
Raghav Gururajan
8f9fdd31bd gnu: Add giara.
* gnu/packages/syndication.scm (giara): New variable.
* gnu/packages/patches/giara-fix-login.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-05-11 18:07:09 -04:00
Leo Famulari
0f2b5f7f73 gnu: ExifTool: Fix CVE-2021-22204
* gnu/packages/patches/perl-image-exiftool-CVE-2021-22204.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/photo.scm (perl-image-exiftool)[source]: Use it.
2021-05-09 10:42:18 -04:00
Mike Gerwitz
f30e8f2909 gnu: Add tla2tools.
This introduces tla2tools.jar, which contains the TLA+ model checker
and simulator (TLC); a TLA+ REPL; a semantic analyzer (SANY); the TLATeX
typesetting system; PlusCal translator; and more.  I have added five
wrapper scripts for convenience, rather than invoking `java' manually.
The wrapper scripts are not comprehensive; users who are familiar with
tla2tools.jar, or have read the book Specifying Systems, may still
invoke the commands in the traditional way.

The minimum JDK version is 11.  I chose to stick with that rather than
bumping it to 14 (which is the largest version currently in Guix)
because each OpenJDK version in Guix depends on the version before it,
and so it needlessly results in many 100s of MiB of unnecessary
dependencies.

Note that this is _not_ the TLA+ Toolbox, which is the GUI commonly used
with TLA+.

* gnu/packages/java.scm (tla2tools): New variable.
* gnu/packages/patches/tla2tools-build-xml.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-05 16:56:46 +02:00
Philip McGrath
cd9454f6ed gnu: racket: Remove obsolete patch.
* gnu/packages/racket.scm (racket)[source](patches): Remove
"racket-store-checksum-override.patch", which is no longer needed since
we stopped injecting store paths into Racket files in commit 834aa48:
see <https://issues.guix.gnu.org/47180>.
* gnu/packages/patches/racket-store-checksum-override.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-05 16:56:44 +02:00
Philip McGrath
3df04eb09f gnu: racket: Move to (gnu packages racket).
* gnu/packages/scheme.scm (racket,racket-minimal): Move to ...
* gnu/packages/racket.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/racket.scm (racket)[synopsis]: Tweak.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-05 16:56:44 +02:00
Tobias Geerinckx-Rice
06cf2fc01f gnu: busybox: Update to 1.33.1.
* gnu/packages/busybox.scm (busybox): Update to 1.33.1.
[source]: Remove upstreamed patch.
* gnu/packages/patches/busybox-CVE-2021-28831.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-04 15:56:27 +02:00