gnu: linux-libre: Update default version to 7.0.

* gnu/packages/linux.scm (linux-libre-version, linux-libre-gnu-revision,
linux-libre-pristine-source, linux-libre-source, linux-libre,
linux-libre-arm64-mnt-reform): Update to 7.0.

.dir-locals.el

@@ -42,9 +42,13 @@
      ;; For use with 'bug-reference-prog-mode'.  Extra bug-reference
      ;; configuration should be done in your Emacs user configuration file;
      ;; refer to (info (guix) The Perfect Setup).
-     (bug-reference-bug-regexp
-      . "\\(<https?://\\bugs\\.gnu\\.org/\\([0-9]+\\)>\\)")
-     (bug-reference-url-format . "https://issues.guix.gnu.org/%s")
+     (eval . (setq-local
+              ;; #8545, guix/guix#8545, guix/guix!8545, but not !8545
+              bug-reference-bug-regexp
+              (rx (group (or (seq (zero-or-more "guix/guix") "#")
+                             (seq (one-or-more "guix/guix") "!"))
+                         (group (one-or-more digit))))))
+     (bug-reference-url-format . "https://codeberg.org/guix/guix/issues/%s")
 
      (eval . (add-to-list 'completion-ignored-extensions ".go"))
 

.guix-authorizations

@@ -16,6 +16,8 @@
   ( ;; primary: "D0C2 EAC1 3310 822D 98DE  B57C E9C5 A2D9 0898 A02F"
    "01FD 85F4 1A7B 7F82 0583  06A5 935E BE07 36DC 857E"
    (name "avp"))
+  ("5D54 CF25 57B2 38E8 8DC1  80A2 2D22 3241 0AB7 4043"
+   (name "baleine"))
   ( ;; primary: "34FF 38BC D151 25A6 E340  A0B5 3453 2F9F AFCA 8B8E"
    "A3A4 B419 0074 087C A7DE  5698 BC45 CA67 E2F8 D007"
    (name "bavier"))

CODEOWNERS

@@ -32,6 +32,7 @@ gnu/packages/assembly\.scm                         @guix/build-tools
 gnu/packages/autogen\.scm                          @guix/build-tools
 gnu/packages/autotools\.scm                        @guix/build-tools
 gnu/packages/bison\.scm                            @guix/build-tools
+gnu/packages/compiler-tools\.scm                   @guix/build-tools
 gnu/packages/m4\.scm                               @guix/build-tools
 gnu/packages/oyacc\.scm                            @guix/build-tools
 gnu/packages/re2c\.scm                             @guix/build-tools
@@ -161,6 +162,8 @@ gnu/system/examples/bare-bones\.tmpl               @guix/documentation
 gnu/system/examples/lightweight-desktop\.tmpl      @guix/documentation
 gnu/system/examples/desktop\.tmpl                  @guix/documentation
 
+gnu/packages/dotnet\.scm                           @guix/dotnet
+
 gnu/packages/electronics\.scm                      @guix/electronics
 gnu/packages/hdl\.scm                              @guix/electronics
 gnu/packages/libftdi\.scm                          @guix/electronics
@@ -264,6 +267,7 @@ gnu/installer(\.scm$|/)                            @guix/installer
 gnu/packages/clojure\.scm                          @guix/java
 gnu/packages/java(-.+|)\.scm$                      @guix/java
 gnu/packages/maven(-.+|)\.scm$                     @guix/java
+gnu/packages/netbeans\.scm                         @guix/java
 guix/build/ant-build-system\.scm                   @guix/java
 guix/build/clojure-build-system\.scm               @guix/java
 guix/build/clojure-utils\.scm                      @guix/java
@@ -274,6 +278,7 @@ guix/build-system/ant\.scm                         @guix/java
 guix/build-system/clojure\.scm                     @guix/java
 guix/build-system/maven\.scm                       @guix/java
 
+gnu/packages/javascript\.scm                       @guix/javascript
 gnu/packages/node-xyz\.scm                         @guix/javascript
 gnu/packages/node\.scm                             @guix/javascript
 guix/build-system/node\.scm                        @guix/javascript
@@ -336,6 +341,7 @@ guix/build-system/rakudo\.scm                      @guix/perl
 guix/import/cpan\.scm                              @guix/perl
 guix/scripts/import/cpan\.scm                      @guix/perl
 
+gnu/packages/aux-files/python/.*\.py$              @guix/python
 gnu/packages/django\.scm                           @guix/python
 gnu/packages/jupyter\.scm                          @guix/python
 gnu/packages/python(-.+|)\.scm$                    @guix/python

Makefile.am

@@ -457,6 +457,8 @@ AUX_FILES =						\
   gnu/packages/aux-files/findclass.php			\
   gnu/packages/aux-files/guix.vim			\
   gnu/packages/aux-files/guix-nvim.vim			\
+  gnu/packages/aux-files/linux-libre/7.0-arm64.conf	\
+  gnu/packages/aux-files/linux-libre/7.0-x86_64.conf	\
   gnu/packages/aux-files/linux-libre/6.19-arm64.conf	\
   gnu/packages/aux-files/linux-libre/6.19-i686.conf	\
   gnu/packages/aux-files/linux-libre/6.19-x86_64.conf	\
@@ -486,6 +488,7 @@ AUX_FILES =						\
   gnu/packages/aux-files/linux-libre/5.10-x86_64.conf	\
   gnu/packages/aux-files/ovmf/51-edk2-ovmf-2m-raw-x64-nosb.json	\
   gnu/packages/aux-files/pack-audit.c			\
+  gnu/packages/aux-files/python/pytest_guix.py		\
   gnu/packages/aux-files/python/sanity-check.py		\
   gnu/packages/aux-files/python/sitecustomize.py	\
   gnu/packages/aux-files/renpy/renpy.in	\

build-aux/test-env.in

@@ -120,6 +120,7 @@ running 'guix-daemon $extra_options'" >&2
     "@abs_top_builddir@/pre-inst-env"				\
 	"@abs_top_builddir@/guix-daemon"			\
         $extra_options						\
+        --allow-aslr                                            \
 	--substitute-urls="$GUIX_BINARY_SUBSTITUTE_URL" &
 
     daemon_pid=$!

doc/build.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2019-2025 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2019-2026 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 ;;; Copyright © 2022 Maxim Cournoyer <maxim@guixotic.coop>
 ;;; Copyright © 2025 Florian Pelz <pelzflorian@pelzflorian.de>
@@ -324,17 +324,31 @@ actual file name."
                     ((('span ('@ ('class "category")) ;raw Texinfo 6.8
                              (? string-or-entity?) ...) rest ...)
                      #t)
-                    ((('span ('@ ('class "symbol-definition-category"))
-                             (? string-or-entity?) ...) rest ...)
+                    ((('span                      ;Texinfo 6, post-processed
+                       ('@ ('class "symbol-definition-category"))
+                       (? string-or-entity?) ...) rest ...)
+                     #t)
+                    ((('span                      ;Texinfo 7
+                       ('@ ('class "category-def")) _ ...)
+                      ('span ('strong ('@ ('class "def-name")) _ ...)
+                             _ ...)
+                      rest ...)
                      #t)
                     (x
                      #f))))
 
+              (define (definition-class? class)
+                ;; Return true for "deffn def-line", "deftp def-line", etc.
+                (string-suffix? " def-line" class))
+
               (let ((shtml (call-with-input-file file html->shtml)))
                 (let loop ((shtml shtml)
                            (anchors anchors))
                   (match shtml
-                    (('dt ('@ ('id id) _ ...) rest ...)
+                    ((or ('dt ('@ ('id id) _ ...) rest ...)      ;Texinfo 6
+                         ('dt ('@ ('class (? definition-class?)) ;Texinfo 7
+                                  ('id id))
+                              rest ...))
                      (if (and (string-prefix? "index-" id)
                               (worthy-entry? rest))
                          (alist-cons (anchor-id->key id)
@@ -505,10 +519,16 @@ its <pre class=\"lisp\"> blocks (as produced by 'makeinfo --html')."
                    (loop rest (cons str strings)))
                   ((('*ENTITY* "additional" entity) . rest)
                    (loop rest (cons (entity->string entity) strings)))
+                  ((('*ENTITY* "additional-char" entity) . rest)
+                   (loop rest (cons (string
+                                     (integer->char (string->number entity)))
+                                    strings)))
                   ((('span _ lst ...) . rest)     ;for <span class="roman">
                    (loop (append lst rest) strings))
-                  ((('var name) . rest)           ;for @var{name} within @lisp
+                  ((('var ('@ _) name) . rest)    ;for @var{name} within @lisp
                    (loop rest (cons name strings))) ;XXX: losing formatting
+                  ((('var name) . rest)           ;likewise (Texinfo 6)
+                   (loop rest (cons name strings)))
                   (something
                    (pk 'unsupported-code-snippet something)
                    (primitive-exit 1)))))
@@ -537,7 +557,10 @@ its <pre class=\"lisp\"> blocks (as produced by 'makeinfo --html')."
                           (link (@ (rel "stylesheet")
                                    (type "text/css")
                                    (href #$syntax-css-url)))))
-                  (('pre ('@ ('class "lisp")) code-snippet ...)
+                  ((or ('pre ('@ ('class "lisp")) ;Texinfo 6
+                             code-snippet ...)
+                       ('pre ('@ ('class "lisp-preformatted"))
+                             code-snippet ...))
                    `(pre (@ (class "lisp"))
                          ,@(highlights->sxml*
                             (pair-open/close
@@ -545,14 +568,16 @@ its <pre class=\"lisp\"> blocks (as produced by 'makeinfo --html')."
                                         (concatenate-snippets code-snippet)))
                             anchors)))
 
-                  ;; Replace the ugly <strong> used for @deffn etc., which
-                  ;; translate to <dt>, with more stylable markup.
+                  ;; For Texinfo 6: Replace the ugly <strong> used for @deffn
+                  ;; etc., which translate to <dt>, with more stylable
+                  ;; markup.  No such post-processing is needed for @deffn
+                  ;; with Texinfo 7.
                   (('dt ('@ ('id id))             ;raw Texinfo 6.8
                         ('span ('@ ('class "category")) category ...)
                         ('span ('strong thing)
                                anchor))
                    (highlight-definition id category thing '()))
-                  (('dt (@ ('id id))
+                  (('dt ('@ ('id id))             ;ditto
                         ('span ('@ ('class "category")) category ...)
                         ('span ('strong thing)
                                (? space?) ('em args ...)
@@ -808,16 +833,9 @@ in SOURCE."
                 (match sxml
                   (('*TOP* decl body ...)
                    `(*TOP* ,decl ,@(map loop body)))
-                  (('head elements ...)
-                   ;; Add reference to our own manual CSS, which provides
-                   ;; support for the language menu.
-                   `(head ,@elements
-                          (link (@ (rel "stylesheet")
-                                   (type "text/css")
-                                   (href #$manual-css-url)))))
-                  (('body ('@ attributes ...) elements ...)
-                   `(body (@ ,@attributes)
-                          ,(navigation-bar
+                  ((or ('body ('@ _) elements ...)
+                       ('body elements ...))
+                   `(body ,(navigation-bar
                             ;; TODO: Add "Contribute" menu, to report
                             ;; errors, etc.
                             (list (menu-dropdown
@@ -952,12 +970,12 @@ makeinfo OPTIONS."
                         (mkdir-p (string-append #$output "/"
                                                 (normalize language)))
                         (setenv "LANGUAGE" language)
-                        (apply invoke #$(file-append texinfo "/bin/makeinfo")
+                        (apply invoke #$(file-append texinfo-7 "/bin/makeinfo")
                                "-o" (string-append #$output "/"
                                                    (normalize language)
                                                    "/html_node")
                                opts)
-                        (apply invoke #$(file-append texinfo "/bin/makeinfo")
+                        (apply invoke #$(file-append texinfo-7 "/bin/makeinfo")
                                "--no-split"
                                "-o"
                                (string-append #$output "/"
@@ -1409,7 +1427,7 @@ commit date (an integer)."
                                  (string-append #+tar "/bin:"
                                                 #+xz "/bin:"
                                                 #+zstd "/bin:"
-                                                #+texinfo "/bin"))
+                                                #+texinfo-7 "/bin"))
                          (invoke "tar" "xf" #$(package-source guile))
                          (mkdir-p (string-append #$output "/en/html_node"))
 
@@ -1428,7 +1446,7 @@ commit date (an integer)."
                               (string-append #$output "/en/html_node")))))))))
 
 (define %guile-manual-base-url
-  "https://www.gnu.org/software/guile/manual")
+  "https://doc.guix.gnu.org/guile/latest/en")
 
 (define (for-all-languages index)
   (map (lambda (language)

doc/contributing.texi

@@ -618,6 +618,33 @@ enhance @code{scheme-mode} and Geiser.  @xref{Introduction,,,
 emacs-guix, Emacs-Guix Reference Manual}, to make sure you don't miss
 out!
 
+@unnumberedsubsubsec Submitting Pull Requests Following the AGit Workflow
+
+@cindex AGit workflow, for pull requests (Emacs).
+@url{https://codeberg.org/halvin/agitjo, Agitjo} is a helper to ease
+AGit workflow based patch submission (@pxref{Submitting Patches}).
+Install it with:
+
+@example
+guix install emacs-agitjo
+@end example
+
+Assuming your local checkout is on the branch containing the changes you
+would like to submit for inclusion in the @code{master} branch, use
+@command{M-x agitjo-push} then:
+
+@itemize
+@item
+Set options like the title @option{-t} and the session identifier
+@option{-s}.
+@item
+Invoke one of the push commands to execute a @command{git push} operation.
+@end itemize
+
+When creating a new pull request, a dedicated buffer will open for
+drafting a description. The force-push option @option{-f} is enabled to
+push changes to the existing pull request.
+
 @unnumberedsubsubsec Taming Boilerplate with Templates
 
 @cindex code snippets
@@ -706,13 +733,7 @@ Manual}).  To set it up, enable it in the relevant modes:
 
 When working from a Git checkout of Guix, setup is automatic:
 @code{bug-reference} automatically detects that the project is hosted on
-Codeberg@footnote{
-@c 'vc-git-repository-url' is used by
-@c 'bug-reference-setup-from-vc-alist', which checks for one of these
-@c names for the remote.
-As of Emacs@tie{}30.2, auto-detection works if and
-only if the Git remote is called @code{upstream} or @code{origin}.} and
-infers the issue and pull request URL from there.
+Codeberg and infers the issue and pull request URL from there.
 
 @node Guile Studio
 @subsection Guile Studio

doc/guix-cookbook.texi

@@ -646,9 +646,11 @@ This field contains a description of the source code origin.  The
 
 @enumerate
 @item  The method, here @code{url-fetch} to download via HTTP/FTP, but other methods
-    exist, such as @code{git-fetch} for Git repositories.
+    exist, such as @code{git-fetch} for Git repositories.  @xref{origin
+    Reference,,, guix, GNU Guix Reference Manual}, for more info on the
+    available download methods.
 @item  The URI, which is typically some @code{https://} location for @code{url-fetch}.  Here
-    the special `mirror://gnu` refers to a set of well known locations, all of
+    the special @code{mirror://gnu} refers to a set of well known locations, all of
     which can be used by Guix to fetch the source, should some of them fail.
 @item  The @code{sha256} checksum of the requested file.  This is essential to ensure
     the source is not corrupted.  Note that Guix works with base32 strings,
@@ -1116,7 +1118,8 @@ Let's discuss those fields in depth.
 @subsubsection @code{git-fetch} method
 
 Unlike the @code{url-fetch} method, @code{git-fetch} expects a @code{git-reference} which takes
-a Git repository and a commit.  The commit can be any Git reference such as
+a Git repository and a commit (@pxref{origin Reference,,, guix, GNU Guix
+Reference Manual}).  The commit can be any Git reference such as
 tags, so if the @code{version} is tagged, then it can be used directly.  Sometimes
 the tag is prefixed with a @code{v}, in which case you'd use @code{(commit (string-append
 "v" version))}.
@@ -1162,7 +1165,7 @@ Snippets might need additional Guile modules which can be imported from the
 
 There are 3 different input types.  In short:
 
-@table @asis
+@table @code
 @item native-inputs
 Required for building but not runtime -- installing a package
 through a substitute won't install these inputs.
@@ -1230,9 +1233,14 @@ It's advised to separate outputs only when you've shown it's worth it: if the
 output size is significant (compare with @code{guix size}) or in case the package is
 modular.
 
+@xref{Packages with Multiple Outputs,,, guix, GNU Guix Reference
+Manual}, for more info.
+
 @subsubsection Build system arguments
 
-The @code{arguments} is a keyword-value list used to configure the build process.
+The @code{arguments} is a keyword-value list used to configure the build
+process; these arguments are passed to the @dfn{build system}
+(@pxref{Build Systems,,, guix, GNU Guix Reference Manual}).
 
 The simplest argument @code{#:tests?} can be used to disable the test suite when
 building the package.  This is mostly useful when the package does not feature
@@ -1248,7 +1256,7 @@ following flags
                    "CC=gcc")
 @end lisp
 
-translate into
+translate into:
 
 @example
 $ make CC=gcc prefix=/gnu/store/...-<out>
@@ -1268,7 +1276,9 @@ Similarly, it's possible to set the configure flags:
 The @code{%build-inputs} variable is also generated in scope.  It's an association
 table that maps the input names to their store directories.
 
-The @code{phases} keyword lists the sequential steps of the build system.  Typically
+The @code{phases} keyword lists the sequential steps of the build
+system.  @xref{Build Phases,,, guix, GNU Guix Reference Manual}, for
+details; in a nutshell,
 phases include @code{unpack}, @code{configure}, @code{build}, @code{install} and @code{check}.  To know
 more about those phases, you need to work out the appropriate build system
 definition in @samp{$GUIX_CHECKOUT/guix/build/gnu-build-system.scm}:
@@ -1383,10 +1393,12 @@ Its return value is ignored.
 
 @subsubsection Code staging
 
-The astute reader may have noticed the quasi-quote and comma syntax in the
+The astute reader may have noticed the hash-tilde and hash-dollar syntax in the
 argument field.  Indeed, the build code in the package declaration should not be
 evaluated on the client side, but only when passed to the Guix daemon.  This
 mechanism of passing code around two running processes is called @uref{https://arxiv.org/abs/1709.00833, code staging}.
+@xref{G-Expressions,,, guix, GNU Guix Reference Manual}, for info on the
+this mechanism, which is called @dfn{g-expressions}.
 
 @subsubsection Utility functions
 
@@ -1395,7 +1407,7 @@ equivalent system invocations (@code{make}, @code{mkdir}, @code{cp}, etc.)@: com
 regular ``Unix-style'' installations.
 
 Some like @code{chmod} are native to Guile.
-@xref{,,, guile, Guile reference manual} for a complete list.
+@xref{File System,,, guile, Guile reference manual} for a complete list.
 
 Guix provides additional helper functions which prove especially handy in the
 context of package management.
@@ -1529,9 +1541,9 @@ The recursive importer won't import packages for which Guix already has package
 definitions, except for the very first.
 
 Not all applications can be packaged this way, only those relying on a select
-number of supported systems.  Read about the full list of importers in
-the guix import section of the manual
-(@pxref{Invoking guix import,,, guix, GNU Guix Reference Manual}).
+number of supported systems.
+@xref{Invoking guix import,,, guix, GNU Guix Reference Manual} for
+the full list of importers.
 
 @node Automatic update
 @subsubsection Automatic update
@@ -1551,6 +1563,9 @@ well:
 $ guix refresh hello --update
 @end example
 
+@xref{Invoking guix refresh,,, guix, GNU Guix Reference Manual}, for
+more info.
+
 @node Inheritance
 @subsubsection Inheritance
 
@@ -1575,7 +1590,9 @@ noticed that a significant number of them have a @code{inherit} field:
 
 All unspecified fields are inherited from the parent package.  This is very
 convenient to create alternative packages, for instance with different source,
-version or compilation options.
+version or compilation options.  @xref{Defining Package Variants,,, guix,
+GNU Guix Reference Manual}, for a discussion of inheritance and of other
+ways to create package variants.
 
 @node Getting help
 @subsection Getting help
@@ -1616,7 +1633,8 @@ hopefully we will see your contributions soon!
 
 @itemize
 @item
-The @uref{https://guix.gnu.org/manual/en/html_node/Defining-Packages.html, package reference in the manual}
+@xref{Defining Packages,,, guix, GNU Guix Reference Manual}, for the
+@code{package} reference in the manual.
 
 @item
 @uref{https://gitlab.com/pjotrp/guix-notes/blob/master/HACKING.org, Pjotr’s hacking guide to GNU Guix}
@@ -3256,8 +3274,8 @@ your Linode Summary section.) Now you can run the "install guix from
 
 @example
 sudo apt-get install gpg
-wget https://sv.gnu.org/people/viewgpg.php?user_id=15145 -qO - | gpg --import -
-wget https://git.savannah.gnu.org/cgit/guix.git/plain/etc/guix-install.sh
+wget https://codeberg.org/efraim.gpg -qO - | gpg --import -
+wget https://guix.gnu.org/guix-install.sh
 chmod +x guix-install.sh
 ./guix-install.sh
 guix pull
@@ -3436,7 +3454,7 @@ Now you can run the "install guix from @pxref{Binary Installation,,,
 guix, GNU Guix}" steps:
 
 @example
-wget https://git.savannah.gnu.org/cgit/guix.git/plain/etc/guix-install.sh
+wget https://guix.gnu.org/guix-install.sh
 chmod +x guix-install.sh
 ./guix-install.sh
 guix pull
@@ -4491,7 +4509,7 @@ network.  Assuming your interface is named @samp{enp2s0}, the following
 command can be used to do so:
 
 @example sh
-# nmcli con add type bridge-slave ifname enp2s0 master br0
+# nmcli con add type bridge-slave autoconnect yes ifname enp2s0 master br0
 @end example
 
 @quotation Important
@@ -4527,8 +4545,8 @@ bridge interface, as the default is to deny all.  Add the following to
 your list of services to do so:
 
 @example lisp
-(extra-special-file "/etc/qemu/host.conf"
-                    (plain-file "host.conf" "allow br0\n"))
+(extra-special-file "/etc/qemu/bridge.conf"
+                    (plain-file "bridge.conf" "allow br0\n"))
 @end example
 
 @subsection Invoking QEMU with the right command line options
@@ -4546,7 +4564,7 @@ machine making use of the bridge would cause networking issues.
 @example sh
 $ qemu-system-x86_64 [...] \
     -device virtio-net-pci,netdev=user0,mac=XX:XX:XX:XX:XX:XX \
-    -netdev bridge,id=user0,br=br0 \
+    -netdev bridge,helper=/run/privileged/bin/qemu-bridge-helper,id=user0,br=br0 \
     [...]
 @end example
 

doc/local.mk

@@ -6,7 +6,7 @@
 # Copyright © 2016, 2018 Mathieu Lirzin <mthl@gnu.org>
 # Copyright © 2018, 2021 Julien Lepiller <julien@lepiller.eu>
 # Copyright © 2019 Timothy Sample <samplet@ngyro.com>
-# Copyright © 2024 Janneke Nieuwenhuizen <janneke@gnu.org>
+# Copyright © 2024, 2026 Janneke Nieuwenhuizen <janneke@gnu.org>
 # Copyright © 2024 gemmaro <gemmaro.dev@gmail.com>
 #
 # This file is part of GNU Guix.
@@ -30,7 +30,7 @@ COOKBOOK_LANGUAGES = de es fr it ko pt_BR ru sk sv ta zh_CN
 
 # Arg1: A list of languages codes.
 # Arg2: The file name stem.
-lang_to_texinfo = $(foreach lang,$(1),%D%/$(2).$(lang).texi)
+lang_to_texinfo = $(foreach lang,$(1),$(srcdir)/%D%/$(2).$(lang).texi)
 
 # Automake does not understand GNU Make non-standard extensions,
 # unfortunately, so we cannot use the above patsubst-based function here.
@@ -104,7 +104,7 @@ MAINTAINERCLEANFILES  = $(OS_CONFIG_EXAMPLES_TEXI) $(TRANSLATED_INFO)
 # reference is not translated, which means it references a section that does not
 # exist.
 define xref_command
-$(top_srcdir)/pre-inst-env $(GUILE) --no-auto-compile	\
+$(top_builddir)/pre-inst-env $(GUILE) --no-auto-compile	\
   "$(top_srcdir)/build-aux/convert-xref.scm"		\
   $@.tmp $<
 endef
@@ -116,21 +116,21 @@ dummy_pot = $(shell mktemp --suffix=.pot)
 $(srcdir)/%D%/guix.%.texi: po/doc/guix-manual.%.po $(srcdir)/%D%/contributing.%.texi guix/build/po.go
 	-$(AM_V_PO4A)$(PO4A) --no-update			\
 	    --variable localized="$@.tmp"			\
-	    --variable master="%D%/guix.texi"			\
+	    --variable master="$(srcdir)/%D%/guix.texi"		\
 	    --variable po="$<"					\
 	    --variable pot=$(dummy_pot)			\
-	    po/doc/po4a.cfg
+	    $(srcdir)/po/doc/po4a.cfg
 	-sed -i "s|guix\.info|$$(basename "$@" | sed 's|texi$$|info|')|" "$@.tmp"
 	-$(AM_V_POXREF)LC_ALL=en_US.UTF-8 $(xref_command)
 	-mv "$@.tmp" "$@"
 
 $(srcdir)/%D%/guix-cookbook.%.texi: po/doc/guix-cookbook.%.po guix/build/po.go
-	-$(AM_V_PO4A)$(PO4A) --no-update			\
-	    --variable localized="$@.tmp"			\
-	    --variable master="%D%/guix-cookbook.texi"		\
-	    --variable po="$<"					\
+	-$(AM_V_PO4A)$(PO4A) --no-update				\
+	    --variable localized="$@.tmp"				\
+	    --variable master="$(srcdir)/%D%/guix-cookbook.texi"	\
+	    --variable po="$<"						\
 	    --variable pot=$(dummy_pot)			\
-	    po/doc/po4a.cfg
+	    $(srcdir)/po/doc/po4a.cfg
 	-sed -i "s|guix-cookbook\.info|$$(basename "$@" | sed 's|texi$$|info|')|" "$@.tmp"
 	-$(AM_V_POXREF)LC_ALL=en_US.UTF-8 $(xref_command)
 	-mv "$@.tmp" "$@"
@@ -138,16 +138,16 @@ $(srcdir)/%D%/guix-cookbook.%.texi: po/doc/guix-cookbook.%.po guix/build/po.go
 $(srcdir)/%D%/contributing.%.texi: po/doc/guix-manual.%.po guix/build/po.go
 	-$(AM_V_PO4A)$(PO4A) --no-update			\
 	    --variable localized="$@.tmp"			\
-	    --variable master="%D%/contributing.texi"		\
+	    --variable master="$(srcdir)/%D%/contributing.texi"		\
 	    --variable po="$<"					\
 	    --variable pot=$(dummy_pot)			\
-	    po/doc/po4a.cfg
+	    $(srcdir)/po/doc/po4a.cfg
 	-$(AM_V_POXREF)LC_ALL=en_US.UTF-8 $(xref_command)
 	-mv "$@.tmp" "$@"
 
 %D%/os-config-%.texi: gnu/system/examples/%.tmpl
 	$(AM_V_GEN)$(MKDIR_P) "`dirname $@`";	\
-	cp "$<" "$@"
+	sed -e s,@,@@,g "$<" > "$@"
 
 infoimagedir = $(infodir)/images
 dist_infoimage_DATA =				\

etc/manifests/cross-compile.scm

@@ -1,6 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2020-2022, 2024 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
+;;; Copyright © 2020, 2026 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2023 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2025 Efraim Flashner <efraim@flashner.co.il>
 ;;;
@@ -61,7 +61,7 @@ TARGET."
   ;; from the other package sets.
   (fold delete %base-packages
         (append (map specification->package
-                     '("e2fsprogs" "kbd" "iproute2" "iw" "wireless-tools"))
+                     '("kbd" "iproute2" "iw" "wireless-tools"))
                 %base-packages-linux)))
 
 (define %system-packages

etc/teams.scm

@@ -514,6 +514,7 @@ of Rebar and Mix build systems and Hex.pm importer."
                       "gnu/packages/autogen.scm"
                       "gnu/packages/autotools.scm"
                       "gnu/packages/bison.scm"
+                      "gnu/packages/compiler-tools.scm"
                       "gnu/packages/m4.scm"
                       "gnu/packages/oyacc.scm"
                       "gnu/packages/re2c.scm")))
@@ -661,6 +662,12 @@ challenges"))
                       "gnu/system/examples/lightweight-desktop.tmpl"
                       "gnu/system/examples/desktop.tmpl")))
 
+(define-team dotnet
+  (team 'dotnet
+        #:name ".NET"
+        #:description ".NET programming environment."
+        #:scope (list "gnu/packages/dotnet.scm")))
+
 (define-team electronics
   (team 'electronics
         #:name "Electronics team"
@@ -828,6 +835,7 @@ and the maven-build-system."
               (make-regexp* "^gnu/packages/java(-.+|)\\.scm$")
               ;; Match maven.scm and maven-*.scm
               (make-regexp* "^gnu/packages/maven(-.+|)\\.scm$")
+              "gnu/packages/netbeans.scm"
               "guix/build/ant-build-system.scm"
               "guix/build/clojure-build-system.scm"
               "guix/build/clojure-utils.scm"
@@ -844,7 +852,8 @@ and the maven-build-system."
         #:name "JavaScript team"
         #:description
         "JavaScript/Node.js packages, the node build system."
-        #:scope (list "gnu/packages/node-xyz.scm"
+        #:scope (list "gnu/packages/javascript.scm"
+                      "gnu/packages/node-xyz.scm"
                       "gnu/packages/node.scm"
                       "guix/build-system/node.scm"
                       "guix/build/node-build-system.scm"
@@ -975,7 +984,8 @@ perl-build-system as well as the rakudo-build-system."
         #:description
         "Python, Python packages, the \"pypi\" importer, and the python-build-system."
         #:scope
-        (list "gnu/packages/django.scm"
+        (list (make-regexp* "^gnu/packages/aux-files/python/.*\\.py$")
+              "gnu/packages/django.scm"
               "gnu/packages/jupyter.scm"
               (make-regexp* "^gnu/packages/python(-.+|)\\.scm$")
               "gnu/packages/sphinx.scm"
@@ -1239,6 +1249,11 @@ the \"texlive\" importer."
                       "guix/build-system/zig.scm")))
 
 
+(define-member (person "Anderson Torres"
+                       "anderson.torres.8519@gmail.com"
+                       "AndersonTorres")
+  community translations)
+
 (define-member (person "Eric Bavier"
                        "bavier@posteo.net"
                        "bavier")
@@ -1542,7 +1557,7 @@ the \"texlive\" importer."
 (define-member (person "Danny Milosavljevic"
                        "dannym@friendly-machines.com"
                        "daym")
-  bootstrap hpc python rust science)
+  bootstrap dotnet hpc python rust science)
 
 (define-member (person "Andy Tai"
                        "atai@atai.org"
@@ -1562,7 +1577,7 @@ the \"texlive\" importer."
 (define-member (person "Nguyễn Gia Phong"
                        "cnx@loang.net"
                        "cnx")
-  build-tools python qa-packages sysadmin vcs)
+  build-tools lua qa-packages sysadmin vcs)
 
 (define-member (person "Lilah Tascheter"
                        "lilah@lunabee.space"
@@ -1637,7 +1652,7 @@ the \"texlive\" importer."
 (define-member (person "Thanos Apollo"
                        "public@thanosapollo.org"
                        "thanosapollo")
-  vcs)
+  vcs emacs)
 
 (define-member (person "Ashish SHUKLA"
                        "ashish.is@lostca.se"
@@ -1659,6 +1674,26 @@ the \"texlive\" importer."
                        "tok")
   electronics)
 
+(define-member (person "gemmaro"
+                       "gemmaro.dev@gmail.com"
+                       "gemmaro")
+  ruby)
+
+(define-member (person "bdunahu"
+                       "bdunahu@operationnull.com"
+                       "bdunahu")
+  games)
+
+(define-member (person "Nomike"
+                       "nomike@nomike.com"
+                       "nomike")
+  dotnet)
+
+(define-member (person "Fabio Natali"
+                       "me@fabionatali.com"
+                       "fnat")
+  emacs)
+
 
 (define (find-team name)
   (or (hash-ref %teams (string->symbol name))

gnu/bootloader/grub.scm

@@ -446,9 +446,11 @@ when booting a root file system on a Btrfs subvolume."
                (modules (menu-entry-multiboot-modules entry)))
           #~(format port "
 menuentry ~s {
+  ~a
   multiboot ~a root=~a~a~a
 }~%"
                     #$label
+                    #$(grub-root-search device kernel)
                     #$kernel
                     #$(device-name->hurd-device-name device-name #:disk disk)
                     (string-join (list #$@arguments) " " 'prefix)

gnu/build/file-systems.scm

@@ -1226,10 +1226,12 @@ file name or an nfs-root containing ':/')."
 
   (match spec
     ((? string?)
-     (if (string-prefix? "/dev/" spec)
+     (if (string-match "^/dev/[a-zA-Z0-9]+$" spec)
          ;; Nothing to do, but wait until SPEC shows up.
          (resolve device-exists? spec identity)
-         spec)) ; do not resolve NFS / CIFS / tmpfs devices
+         ;; Do not resolve NFS / CIFS / tmpfs devices
+         ;; or bcachefs multi-device specifications.
+         spec))
     ((? file-system-label?)
      ;; Resolve the label.
      (resolve find-partition-by-label

gnu/build/hurd-boot.scm

@@ -74,16 +74,37 @@ Return the value associated with OPTION, or #f on failure."
                 (loop (absolute target) (+ depth 1))
                 file))))))
 
-(define* (make-hurd-device-nodes #:optional (root "/"))
+(define* (make-hurd-device-nodes #:key (root "/") (hurd "/hurd"))
   "Make some of the nodes needed on GNU/Hurd."
   (define (scope dir)
-    (string-append root (if (string-suffix? "/" root) "" "/") dir))
+    (in-vicinity root dir))
+
+  (define scope-set-translator
+    (match-lambda
+      ((file-name command)
+       (scope-set-translator (list file-name command #o600)))
+      ((file-name command mode)
+       (let ((mount-point (scope file-name)))
+         (set-translator mount-point command mode)))))
 
   (mkdir-p (scope "dev"))
-  ;; Don't create /dev/null etc just yet; the store
-  ;; messes-up the permission bits.
-  ;; Don't create /dev/console, /dev/vcs, etc.: they are created by
-  ;; console-run on first boot.
+  ;; XXX: We must have `/dev/console` otherwise `console-run` tries to
+  ;; create it while the file-system is still read-only.
+  (for-each (lambda (file)
+              (call-with-output-file (scope file)
+                (lambda (port)
+                  (display file port)   ;avoid hard-linking
+                  (chmod port #o666))))
+            '("dev/console"
+              ;; XXX What about vcs?
+              ;; Don't create /dev/null etc just yet; the store
+              ;; messes-up the permission bits.
+              ;; "dev/null"
+              ;; "dev/zero"
+              ;; "dev/full"
+              ;; "dev/random"
+              ;; "dev/urandom"
+              ))
 
   (mkdir-p (scope "servers"))
   (for-each (lambda (file)
@@ -101,22 +122,47 @@ Return the value associated with OPTION, or #f on failure."
               "suspend"))
 
   (mkdir-p (scope "servers/socket"))
+  (mkdir-p (scope "servers/bus/pci"))
 
-  ;; Don't create /servers/socket/1 & co: runsystem does that on first boot.
+  ;; Set the 'gnu.translator' extended attribute for passive translator
+  ;; settings for pipes (servers/socet/1) and mount information (proc/mounts).
+  ;; Pipes are needed for guile-3.0.11 to startup, this enables moving
+  ;; "runsystem" to guile.
+  ;; XXX TODO: Set more passive xattr translators?
+  (define servers
+    `(
+      ;; ("servers/bus/pci"         ("/hurd/pci-arbiter"))
+      ;; ("servers/crash-dump-core" ("/hurd/crash" "--dump-core"))
+      ;; ("servers/crash-kill"      ("/hurd/crash" "--kill"))
+      ;; ("servers/crash-suspend"   ("/hurd/crash" "--suspend"))
+      ;; ("servers/password"        ("/hurd/password"))
+      ;; PIPE -- for running runsystem as Guile
+      ("servers/socket/1"        (,(in-vicinity hurd "pflocal")))
+      ;; /servers/socket/2 and /26 are created by 'static-networking-service'.
+      ;; XXX: Spawn pfinet without arguments on these nodes so that a DHCP
+      ;; client has someone to talk to?
+      ("proc"                    (,(in-vicinity hurd "procfs") "--stat-mode=444"))))
 
-  ;; TODO: Set the 'gnu.translator' extended attribute for passive translator
-  ;; settings?
-  (mkdir-p (scope "servers/bus/pci")))
+  (for-each scope-set-translator servers)
+
+  (define devices
+    '())
+  (for-each scope-set-translator devices))
 
 (define (passive-translator-xattr? file-name)
   "Return true if FILE-NAME has an extended @code{gnu.translator} attribute
-set."
-  (catch 'system-error
-    (lambda _ (not (string-null? (getxattr file-name "gnu.translator"))))
-    (lambda args
-      (if (= ENODATA (system-error-errno args))
-          #f
-          (apply throw args)))))
+set.
+
+Note that reading \"gnu.*\" xattrs on Linux only work with ext4; for tmpfs,
+used during image creation, linux-7.0 with linux-shmem-hurd-xattr patch is
+needed."
+  (and (file-exists? file-name)
+       (catch 'system-error
+         (lambda _ (not (string-null? (getxattr file-name "gnu.translator"))))
+         (lambda args
+           (if (= ENODATA (system-error-errno args))
+               #f
+               (apply throw args))))))
 
 (define (passive-translator-installed? file-name)
   "Return true if @file{showtrans} finds a translator installed on FILE-NAME."
@@ -136,7 +182,11 @@ set."
       (passive-translator-installed? file-name)))
 
 (define* (set-translator file-name command #:optional (mode #o600))
-  "Setup translator COMMAND on FILE-NAME."
+  "Setup translator COMMAND on FILE-NAME.
+
+Note that setting \"gnu.*\" xattrs on Linux only work with ext4; for tmpfs,
+used during image creation, linux-7.0 with linux-shmem-hurd-xattr patch is
+needed."
   (unless (translated? file-name)
     (let ((dir (dirname file-name)))
       (unless (directory-exists? dir)
@@ -168,7 +218,7 @@ set."
   "Make some of the device nodes needed on GNU/Hurd."
 
   (define (scope dir)
-    (string-append root (if (string-suffix? "/" root) "" "/") dir))
+    (in-vicinity root dir))
 
   (define scope-set-translator
     (match-lambda
@@ -180,8 +230,19 @@ set."
 
   (define (mkdir* dir)
     (let ((dir (scope dir)))
-     (unless (file-exists? dir)
-       (mkdir-p dir))))
+      (unless (file-exists? dir)
+        (mkdir-p dir))))
+
+  ;; (define random-seed "/var/lib/random-seed")
+
+  ;; ;; Create seed file to avoid
+  ;; ;; /gnu/store/...-hurd-x.y.z/hurd/random: Warning: Failed to read random seed file /var/lib/random-seed: No such file or directory
+  ;; (let ((file (scope random-seed)))
+  ;;   (mkdir-p (dirname file))
+  ;;   (call-with-output-file file
+  ;;     (lambda (port)
+  ;;       (display (iota 1000) port)
+  ;;       (chmod port #o600))))
 
   (define servers
     '(("servers/bus/pci"         ("/hurd/pci-arbiter"))
@@ -198,8 +259,14 @@ set."
   (define devices
     `(("dev/full"    ("/hurd/null"     "--full")            #o666)
       ("dev/null"    ("/hurd/null")                         #o666)
-      ("dev/random"  ("/hurd/random"   "--seed-file" "/var/lib/random-seed")
-                                                            #o644)
+      ;; The random translators, especially /dev/urandom, need to be non-passive
+      ;; When they exist in the file-system and reference /var/lib/random-seed
+      ;; while / is read-only. console-run will hang.
+      ;; ("dev/random"  ("/hurd/random"   "--seed-file" ,random-seed)
+      ;;                                                       #o644)
+      ;; ("dev/urandom"  ("/hurd/random"   "--seed-file" ,random-seed
+      ;;                 "--fast")
+      ;;  #o644)
       ("dev/zero"    ("/hurd/storeio"  "--store-type=zero") #o666)
 
       ("dev/console" ("/hurd/term"     "/dev/console" "device" "console"))
@@ -284,7 +351,6 @@ set."
     (rename-file (scope "dev/console") (scope "dev/console-")))
   (for-each scope-set-translator devices)
 
-  (false-if-EEXIST (symlink "/dev/random" (scope "dev/urandom")))
   (false-if-EEXIST (symlink "/dev/fd/0" (scope "dev/stdin")))
   (false-if-EEXIST (symlink "/dev/fd/1" (scope "dev/stdout")))
   (false-if-EEXIST (symlink "/dev/fd/2" (scope "dev/stderr")))

gnu/build/image.scm

@@ -322,7 +322,7 @@ register-closure."
 
   ;; Populate /dev.
   (when make-device-nodes
-    (make-device-nodes root))
+    (make-device-nodes #:root root))
 
   (when register-closures?
     (unless copy-closures?

gnu/build/linux-container.scm

@@ -445,10 +445,14 @@ load path must be adjusted as needed."
           ;; Behave like an init process: create a sub-process that calls
           ;; THUNK, and wait for child processes.  Furthermore, forward
           ;; RELAYED-SIGNALS to the child process.
-          (match (primitive-fork)
-            (0
+          ;; We presently use `safe-clone` here due to a bug in the interaction
+          ;; between Guix and `primitive-fork` in Guile 3.0.11:
+          ;; https://codeberg.org/guix/guix/issues/7690#issuecomment-12744123
+          (safe-clone
+            SIGCHLD
+            (lambda ()
              (call-with-clean-exit thunk))
-            (pid
+            (lambda (pid)
              (install-signal-handlers pid)
              (let loop ()
                (match (wait-child-process)

gnu/ci.scm

@@ -173,7 +173,16 @@ SYSTEM."
 (define (core-packages system)
   "Return the 'core' package set suitable for SYSTEM, which might be a system
 type or a GNU triplet."
-  (cond ((target-linux? system) (append %core-packages %linux-packages))
+  (cond ((target-linux? system)
+         (append %core-packages
+                 %linux-packages
+                 (cond ((target-arm32? system)
+                        (list linux-libre-arm-generic))
+                       ((target-aarch64? system)
+                        (list linux-libre-arm64-generic))
+                       ((target-riscv64? system)
+                        (list linux-libre-riscv64-generic))
+                       (else '()))))
         ((target-hurd? system) (append %core-packages %hurd-packages))
         ((target-mingw? system) %core-packages-for-mingw)
         (else '())))

gnu/home/services/ssh.scm

@@ -70,6 +70,11 @@
             openssh-host-proxy-command
             openssh-host-host-key-algorithms
             openssh-host-accepted-key-types
+            openssh-host-control-master
+            openssh-host-control-file-name
+            openssh-host-control-persist
+            openssh-host-sent-environment-variables
+            openssh-host-environment-variables
             openssh-host-extra-content
             proxy-jump
             proxy-jump-host-name
@@ -84,6 +89,9 @@
 (define (serialize-field-name name)
   (match name
     ('accepted-key-types "PubkeyAcceptedKeyTypes")
+    ('sent-environment-variables "SendEnv")
+    ('environment-variables "SetEnv")
+    ('control-file-name "ControlPath")
     (_
      (let ((name (let ((str (symbol->string name)))
                    (if (string-suffix? "?" str)
@@ -130,6 +138,14 @@
 (define-maybe string)
 (define-maybe natural-number)
 
+(define (serialize-symbol field value)
+  (if (maybe-value-set? value)
+      (string-append "  " (serialize-field-name field) " "
+                     (symbol->string value) "\n")
+      ""))
+
+(define-maybe symbol)
+
 (define (serialize-raw-configuration-string field value)
   (string-append value "\n"))
 (define raw-configuration-string? string?)
@@ -142,6 +158,33 @@
 
 (define-maybe string-list)
 
+(define (env-list? lst)
+  (string-list? lst))
+
+(define (serialize-env-list field lst)
+  (string-append "  " (serialize-field-name field) " "
+                 (string-join lst " ") "\n"))
+
+(define-maybe env-list)
+
+(define (string-alist? lst)
+  (and (list? lst)
+       (every (lambda (x)
+                (and (pair? x)
+                     (string? (car x))
+                     (string? (cdr x))))
+              lst)))
+
+(define (serialize-string-alist field lst)
+  (string-append "  " (serialize-field-name field) " "
+                 (string-join
+                  (map (match-lambda
+                         ((key . value)
+                          (format #nil "~s" (string-append key "=" value))))
+                       lst) " ") "\n"))
+
+(define-maybe string-alist)
+
 (define-record-type <proxy-command>
   (proxy-command command)
   proxy-command?
@@ -275,6 +318,31 @@ through before connecting to the server.")
   (accepted-key-types
    maybe-string-list
    "The list of accepted user public key types.")
+  (control-master
+   maybe-symbol
+   "Enables the sharing of multiple sessions over a single network connection.
+Acceptable values are @code{'no}, @code{'yes}, @code{'auto}, @code{'ask}, and
+@code{'autoask}.")
+  (control-file-name
+   maybe-string
+   "The file name of the control socket used for connection sharing, or
+@code{\"none\"} to disable connection sharing.")
+  (control-persist
+   maybe-string
+   "When used in conjunction with @env{control-master}, specifies that the
+master connection should remain open in the background (waiting for future
+client connections) after the initial client connection has been closed.")
+  (sent-environment-variables
+   maybe-env-list
+   "Specifies which variables from the local environment should be sent to the
+server.  The server must also support it, and the server must be configured to
+accept those environment variables.")
+  (environment-variables
+   maybe-string-alist
+   "List of environment variables with corresponding values to send to the
+server, as an alist of strings of the form @code{'(\"@var{variable}\"
+. \"@var{value}\")}.  The server must also support it, and the server must be
+configured to accept those environment variables.")
   (extra-content
    (raw-configuration-string "")
    "Extra content appended as-is to this @code{Host} block in

gnu/local.mk

@@ -57,7 +57,7 @@
 # Copyright © 2022 ( <paren@disroot.org>
 # Copyright © 2022, 2026 jgart <jgart@dismail.de>
 # Copyright © 2022-2023, 2025-2026 Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org>
-# Copyright © 2023-2025 Zheng Junjie <z572@z572.online>
+# Copyright © 2023-2026 Zheng Junjie <z572@z572.online>
 # Copyright © 2023 Ivana Drazovic <iv.dra@hotmail.com>
 # Copyright © 2023 Andy Tai <atai@atai.org>
 # Copyright © 2023 B. Wilson <elaexuotee@wilsonb.com>
@@ -76,6 +76,7 @@
 # Copyright © 2025 Nigko Yerden <nigko.yerden@gmail.com>
 # Copyright © 2025 Cayetano Santos <csantosb@inventati.org>
 # Copyright © 2025 bdunahu <bdunahu@operationnull.com>
+# Copyright © 2026 Simen Endsjø <contact@simendsjo.me>
 #
 # This file is part of GNU Guix.
 #
@@ -208,6 +209,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/cobol.scm			\
   %D%/packages/code.scm				\
   %D%/packages/commencement.scm			\
+  %D%/packages/compiler-tools.scm		\
   %D%/packages/compression.scm			\
   %D%/packages/compton.scm 			\
   %D%/packages/computer-architecture.scm	\
@@ -234,6 +236,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/darwin.scm			\
   %D%/packages/data-language.scm		\
   %D%/packages/databases.scm			\
+  %D%/packages/datalog.scm			\
   %D%/packages/datamash.scm			\
   %D%/packages/datastructures.scm		\
   %D%/packages/dav.scm				\
@@ -341,6 +344,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/golang-check.scm		\
   %D%/packages/golang-compression.scm		\
   %D%/packages/golang-crypto.scm	      	\
+  %D%/packages/golang-graphics.scm	\
   %D%/packages/golang-maths.scm		\
   %D%/packages/golang-vcs.scm	        	\
   %D%/packages/golang-web.scm	        	\
@@ -502,6 +506,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/myrddin.scm			\
   %D%/packages/ncdu.scm				\
   %D%/packages/ncurses.scm			\
+  %D%/packages/netbeans.scm			\
   %D%/packages/netpbm.scm			\
   %D%/packages/nettle.scm			\
   %D%/packages/networking.scm			\
@@ -728,7 +733,6 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/zig.scm				\
   %D%/packages/zig-xyz.scm			\
   %D%/packages/zile.scm				\
-  %D%/packages/zwave.scm			\
 						\
   %D%/services.scm				\
   %D%/services/admin.scm			\
@@ -755,6 +759,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/services/docker.scm			\
   %D%/services/authentication.scm		\
   %D%/services/file-sharing.scm			\
+  %D%/services/firmware.scm			\
   %D%/services/games.scm			\
   %D%/services/ganeti.scm			\
   %D%/services/getmail.scm				\
@@ -999,7 +1004,9 @@ dist_patch_DATA =						\
   %D%/packages/patches/akonadi-not-relocatable.patch		\
   %D%/packages/patches/akonadi-timestamps.patch		\
   %D%/packages/patches/alure-dumb-2.patch			\
+  %D%/packages/patches/amd-smi-newer-libdrm.patch		\
   %D%/packages/patches/amd-smi-python.patch			\
+  %D%/packages/patches/angband-remove-nonfree-tile-options.patch	\
   %D%/packages/patches/ibus-anthy-fix-tests.patch		\
   %D%/packages/patches/ibus-table-paths.patch			\
   %D%/packages/patches/antiword-CVE-2014-8123.patch			\
@@ -1016,6 +1023,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/ath9k-htc-firmware-gcc.patch		\
   %D%/packages/patches/ath9k-htc-firmware-gcc-compat.patch	\
   %D%/packages/patches/atlas-gfortran-compat.patch		\
+  %D%/packages/patches/aubio-waflib-python312-compat.patch	\
   %D%/packages/patches/audacity-ffmpeg-fallback.patch		\
   %D%/packages/patches/audiofile-fix-datatypes-in-tests.patch	\
   %D%/packages/patches/audiofile-fix-sign-conversion.patch	\
@@ -1093,11 +1101,11 @@ dist_patch_DATA =						\
   %D%/packages/patches/catdoc-CVE-2017-11110.patch		\
   %D%/packages/patches/chez-irregex-import-cond-expand.patch	\
   %D%/packages/patches/chez-scheme-bin-sh.patch			\
+  %D%/packages/patches/cianna-remove-error-for-missing-cuda.patch		\
   %D%/packages/patches/circos-remove-findbin.patch		\
   %D%/packages/patches/cdparanoia-fpic.patch			\
   %D%/packages/patches/cdrkit-libre-cross-compile.patch	\
   %D%/packages/patches/cdrtools-3.01-mkisofs-isoinfo.patch 	\
-  %D%/packages/patches/ceph-fix-cmake.patch                     \
   %D%/packages/patches/cf-tool-add-languages.patch		\
   %D%/packages/patches/chmlib-inttypes.patch			\
   %D%/packages/patches/cl-ana-pr-49.patch			\
@@ -1130,11 +1138,8 @@ dist_patch_DATA =						\
   %D%/packages/patches/clog-fix-shared-build.patch		\
   %D%/packages/patches/clucene-gcc-14.patch			\
   %D%/packages/patches/clucene-pkgconfig.patch			\
-  %D%/packages/patches/coda-use-system-libs.patch		\
   %D%/packages/patches/codex-acp-0.11.1-disable-code-mode.patch \
   %D%/packages/patches/codex-acp-0.11.1-remove-patch-sections.patch \
-  %D%/packages/patches/codex-0.98.0-remove-patch-sections.patch    \
-  %D%/packages/patches/rust-codex-0.117.0-remove-patch-sections.patch    \
   %D%/packages/patches/cogl-fix-double-free.patch		\
   %D%/packages/patches/collada-dom-boost.patch			\
   %D%/packages/patches/collectd-5.11.0-noinstallvar.patch	\
@@ -1166,7 +1171,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/cryfs-boost-1.89-fix.patch		\
   %D%/packages/patches/csvkit-set-locale-for-tests.patch			\
   %D%/packages/patches/ctranslate2-local-build.patch		\
-  %D%/packages/patches/ctune-cmake-disable-git-clone.patch		\
   %D%/packages/patches/cube-nocheck.patch			\
   %D%/packages/patches/cups-relax-root-ownership-check.patch		\
   %D%/packages/patches/cura-engine-gcc-14.patch			\
@@ -1177,7 +1181,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/curlftpfs-fix-memory-leak.patch		\
   %D%/packages/patches/curlftpfs-fix-no_verify_hostname.patch	\
   %D%/packages/patches/cursynth-wave-rand.patch			\
-  %D%/packages/patches/cvc5-reproducible-build.patch		\
   %D%/packages/patches/cvs-CVE-2017-12836.patch		\
   %D%/packages/patches/cyrus-sasl-fix-time-h.patch              \
   %D%/packages/patches/d-feet-drop-unused-meson-argument.patch	\
@@ -1187,6 +1190,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/date-output-pkg-config-files.patch	\
   %D%/packages/patches/dbacl-include-locale.h.patch		\
   %D%/packages/patches/dbacl-icheck-multiple-definitions.patch	\
+  %D%/packages/patches/dblatex-importlib.patch		\
   %D%/packages/patches/dblatex-inkscape-1.0.patch		\
   %D%/packages/patches/dbus-helper-search-path.patch		\
   %D%/packages/patches/ddd-build.patch				\
@@ -1240,7 +1244,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-treelib-remove-python2-compat.patch	\
   %D%/packages/patches/elm-offline-package-registry.patch	\
   %D%/packages/patches/elm-reactor-static-files.patch		\
-  %D%/packages/patches/emacs-buttercup-1.38-native-comp-spy-on-trampoline-scope.patch	\
+  %D%/packages/patches/emacs-agent-shell-fix-tests.patch        \
   %D%/packages/patches/emacs-deferred-fix-number-of-arguments.patch	\
   %D%/packages/patches/emacs-disable-jit-compilation.patch			\
   %D%/packages/patches/emacs-doc-toc-shell-commands.patch	\
@@ -1297,6 +1301,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/fbgemm-use-system-libraries.patch	\
   %D%/packages/patches/fbreader-curl-7.62.patch		\
   %D%/packages/patches/fbreader-fix-icon.patch		\
+  %D%/packages/patches/fdroidcl-fix-tests.patch		\
   %D%/packages/patches/fenics-dolfin-algorithm.patch		\
   %D%/packages/patches/fenics-dolfin-demo-init.patch		\
   %D%/packages/patches/fenics-dolfin-boost.patch		\
@@ -1363,16 +1368,8 @@ dist_patch_DATA =						\
   %D%/packages/patches/ganeti-disable-version-symlinks.patch	\
   %D%/packages/patches/ganeti-haskell-pythondir.patch		\
   %D%/packages/patches/ganeti-lens-compat.patch			\
-  %D%/packages/patches/ganeti-openssh-test-fix.patch		\
-  %D%/packages/patches/ganeti-pyyaml-compat.patch		\
-  %D%/packages/patches/ganeti-procps-compat.patch		\
-  %D%/packages/patches/ganeti-reorder-arbitrary-definitions.patch	\
-  %D%/packages/patches/ganeti-relax-dependencies.patch		\
   %D%/packages/patches/ganeti-shepherd-master-failover.patch	\
   %D%/packages/patches/ganeti-shepherd-support.patch		\
-  %D%/packages/patches/ganeti-sphinx-import.patch		\
-  %D%/packages/patches/ganeti-template-haskell-2.17.patch	\
-  %D%/packages/patches/ganeti-template-haskell-2.18.patch	\
   %D%/packages/patches/gawk-shell.patch				\
   %D%/packages/patches/gcc-arm-bug-71399.patch			\
   %D%/packages/patches/gcc-arm-link-spec-fix.patch		\
@@ -1512,6 +1509,8 @@ dist_patch_DATA =						\
   %D%/packages/patches/glibc-reinstate-prlimit64-fallback.patch	\
   %D%/packages/patches/glibc-supported-locales.patch     	\
   %D%/packages/patches/glibc-versioned-locpath.patch		\
+  %D%/packages/patches/glog-windows-h-nonwindows.patch		\
+  %D%/packages/patches/glycin-sandbox-Adapt-bwrap-invocation.patch	\
   %D%/packages/patches/gmime-disable-tests.patch		\
   %D%/packages/patches/gmp-arm-asm-nothumb.patch		\
   %D%/packages/patches/gmp-faulty-test.patch			\
@@ -1586,7 +1585,9 @@ dist_patch_DATA =						\
   %D%/packages/patches/gtk3-respect-GUIX_GTK3_PATH.patch	\
   %D%/packages/patches/gtk3-respect-GUIX_GTK3_IM_MODULE_FILE.patch \
   %D%/packages/patches/gtk-doc-respect-xml-catalog.patch	\
-  %D%/packages/patches/gtk-doc-mkhtml-test-fix.patch	\
+  %D%/packages/patches/gtk-doc-mkhtml-test-fix.patch	        \
+  %D%/packages/patches/gtk4-demo-reproducible.patch             \
+  %D%/packages/patches/gtk4-needs-udmabuf.patch                 \
   %D%/packages/patches/gtk4-respect-GUIX_GTK4_PATH.patch    	\
   %D%/packages/patches/gtkglext-disable-disable-deprecated.patch \
   %D%/packages/patches/gtksourceview-2-add-default-directory.patch \
@@ -1664,6 +1665,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/isl-0.11.1-aarch64-support.patch		\
   %D%/packages/patches/ispell-for-linphone-cmake.patch		\
   %D%/packages/patches/jami-avutil-link.patch   		\
+  %D%/packages/patches/jami-libjami-cmake.patch			\
   %D%/packages/patches/jamvm-1.5.1-aarch64-support.patch	\
   %D%/packages/patches/jamvm-1.5.1-armv7-support.patch	\
   %D%/packages/patches/jamvm-2.0.0-aarch64-support.patch	\
@@ -1675,6 +1677,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/java-commons-collections-fix-java8.patch \
   %D%/packages/patches/java-guava-remove-annotation-deps.patch \
   %D%/packages/patches/java-jeromq-fix-tests.patch		\
+  %D%/packages/patches/java-jtidy-remove-xerces-dependency.patch	\
   %D%/packages/patches/java-openjfx-build-jdk_version.patch     \
   %D%/packages/patches/java-powermock-fix-java-files.patch		\
   %D%/packages/patches/java-simple-xml-fix-tests.patch		\
@@ -1683,6 +1686,8 @@ dist_patch_DATA =						\
   %D%/packages/patches/java-xerces-build_dont_unzip.patch	\
   %D%/packages/patches/java-xerces-xjavac_taskdef.patch	\
   %D%/packages/patches/jbr-17-xcursor-no-dynamic.patch	\
+  %D%/packages/patches/jbr-25-wayland-drag-icon.patch	\
+  %D%/packages/patches/jbr-25-wayland-intra-jvm-dnd.patch	\
   %D%/packages/patches/jdk-currency-time-bomb.patch		\
   %D%/packages/patches/jdk-currency-time-bomb2.patch		\
   %D%/packages/patches/jfsutils-add-sysmacros.patch		\
@@ -1713,7 +1718,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/libretro-dolphin-emu-libusb-assert.patch \
   %D%/packages/patches/libretro-dolphin-emu-vulkan-headers.patch        \
   %D%/packages/patches/libretranslate-use-flasgger.patch	\
-  %D%/packages/patches/librewolf-150.0-encoding_rs-rust-fix.patch       \
   %D%/packages/patches/librewolf-add-store-to-rdd-allowlist.patch       \
   %D%/packages/patches/librewolf-compare-paths.patch		\
   %D%/packages/patches/librewolf-neuter-locale-download.patch	\
@@ -1744,7 +1748,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/kio-search-smbd-on-PATH.patch		\
   %D%/packages/patches/kismet-unbundle-boost.patch		\
   %D%/packages/patches/kissfft-tflite-micro.patch               \
-  %D%/packages/patches/kitty-fix-wayland-protocols.patch	\
   %D%/packages/patches/kmod-module-directory.patch		\
   %D%/packages/patches/kmscon-8-runtime-keymap-switch.patch	\
   %D%/packages/patches/knot-remove-runtime-deps.patch		\
@@ -1859,6 +1862,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/linux-libre-arm64-mnt-reform-revert-vop2-display-modes.patch	\
   %D%/packages/patches/linux-pam-no-setfsuid.patch		\
   %D%/packages/patches/linux-pam-unix_chkpwd.patch		\
+  %D%/packages/patches/linux-shmem-hurd-xattr.patch		\
   %D%/packages/patches/lirc-localstatedir.patch			\
   %D%/packages/patches/lirc-reproducible-build.patch		\
   %D%/packages/patches/llvm-13-gcc-14.patch			\
@@ -1877,10 +1881,10 @@ dist_patch_DATA =						\
   %D%/packages/patches/lua-5.4-pkgconfig.patch			\
   %D%/packages/patches/lua-5.4-liblua-so.patch			\
   %D%/packages/patches/lua-5.4-search-paths.patch		\
+  %D%/packages/patches/lua-5.5-search-paths.patch		\
   %D%/packages/patches/lua-5.x-search-path-helpers.patch	\
   %D%/packages/patches/lua-lgi-fix-pango.patch			\
   %D%/packages/patches/lua-lgi-fix-ref.patch			\
-  %D%/packages/patches/luanti-paths.patch			\
   %D%/packages/patches/lugaru-fix-sound.patch			\
   %D%/packages/patches/luit-posix.patch				\
   %D%/packages/patches/lxc-no-static-bin.patch	\
@@ -1939,7 +1943,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/modglue-fix-build.patch		\
   %D%/packages/patches/modem-manager-fix-test-wrapper.patch	\
   %D%/packages/patches/module-init-tools-moduledir.patch	\
-  %D%/packages/patches/monero-use-system-miniupnpc.patch			\
   %D%/packages/patches/mono-1.2.6-bootstrap.patch		\
   %D%/packages/patches/mono-1.9.1-add-MONO_CREATE_IMAGE_VERSION.patch		\
   %D%/packages/patches/mono-1.9.1-fixes.patch			\
@@ -1975,6 +1978,12 @@ dist_patch_DATA =						\
   %D%/packages/patches/netcdf-date-time.patch			\
   %D%/packages/patches/netdde-build-fix.patch			\
   %D%/packages/patches/netdde-csum.patch			\
+  %D%/packages/patches/java-apache-xml-commons-resolver-1.2-netbeans.patch \
+  %D%/packages/patches/java-simplevalidation-1.14.1.patch	\
+  %D%/packages/patches/netbeans-25-nativeexecution-paths.patch \
+  %D%/packages/patches/netbeans-25-terminal-no-login-shell.patch \
+  %D%/packages/patches/netbeans-25-source-only-build.patch	\
+  %D%/packages/patches/netbeans-25-wayland-font-rendering.patch	\
   %D%/packages/patches/netpbm-CVE-2017-2586.patch		\
   %D%/packages/patches/netpbm-CVE-2017-2587.patch		\
   %D%/packages/patches/netsurf-message-timestamp.patch		\
@@ -2000,10 +2009,13 @@ dist_patch_DATA =						\
   %D%/packages/patches/nss-3.115-disable-broken-tests.patch     \
   %D%/packages/patches/nss-3.115-disable-pkix-ocsp-tests.patch  \
   %D%/packages/patches/ntp-fix-dereferencing-the-wrong-variable.patch   \
+  %D%/packages/patches/ntfs-3g-autoconf-sbin-helpers.patch   \
+  %D%/packages/patches/ntfs-3g-consistent-sbindir-usage.patch   \
   %D%/packages/patches/nvi-add-function-prototypes.patch	\
   %D%/packages/patches/nvi-assume-preserve-path.patch		\
   %D%/packages/patches/nvi-dbpagesize-binpower.patch		\
   %D%/packages/patches/nvi-db4.patch				\
+  %D%/packages/patches/obs-advanced-masks-nlohmann-json.patch	\
   %D%/packages/patches/obs-modules-location.patch		\
   %D%/packages/patches/ocaml-ctypes-test-oo.patch		\
   %D%/packages/patches/ocaml-multiple-definitions.patch		\
@@ -2066,9 +2078,9 @@ dist_patch_DATA =						\
   %D%/packages/patches/openssl-3.0-c-rehash-in.patch		\
   %D%/packages/patches/openssl-hurd64.patch			\
   %D%/packages/patches/opentaxsolver-file-browser-fix.patch     \
-  %D%/packages/patches/open-zwave-hidapi.patch			\
   %D%/packages/patches/opusfile-CVE-2022-47021.patch		\
   %D%/packages/patches/orbit2-fix-array-allocation-32bit.patch \
+  %D%/packages/patches/orca-fix-gst-init-check-call.patch \
   %D%/packages/patches/orpheus-cast-errors-and-includes.patch	\
   %D%/packages/patches/ots-no-include-missing-file.patch	\
   %D%/packages/patches/owncloud-disable-updatecheck.patch	\
@@ -2099,6 +2111,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-3.11-fix-tests.patch		\
   %D%/packages/patches/python-3.12-fix-tests.patch		\
   %D%/packages/patches/python-anyio-unuse-exceptiongroup-in-test.patch	\
+  %D%/packages/patches/python-beangulp-click-8.2-compat.patch	\
   %D%/packages/patches/python-bed-reader-use-store-samples.patch	\
   %D%/packages/patches/python-chai-drop-python2.patch		\
   %D%/packages/patches/python-clarabel-blas.patch		\
@@ -2121,16 +2134,20 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-pyreadstat-link-libiconv.patch	\
   %D%/packages/patches/python-sip-include-dirs.patch	\
   %D%/packages/patches/python-scikit-build-setuptools-compat.patch	\
+  %D%/packages/patches/python-scikit-image-fix-python-pillow.patch	\
   %D%/packages/patches/python-sgmllib3k-assertions.patch	\
   %D%/packages/patches/python-sphobjinv-defer-ssl-import.patch	\
   %D%/packages/patches/python-sphinx-prompt-docutils-0.19.patch	\
   %D%/packages/patches/python-sshtunnel-pep518.patch	\
   %D%/packages/patches/python-zeroc-ice-3.6.5-python-3.11-support.patch	\
+  %D%/packages/patches/python-zeroc-ice-3.6.5-python-3.12-support.patch	\
+  %D%/packages/patches/python-zipfile2-python-3.12-support.patch	\
   %D%/packages/patches/qcodeeditor-qt6.patch			\
   %D%/packages/patches/qtdeclarative-5-disable-qmlcache.patch	\
   %D%/packages/patches/qtdeclarative-disable-qmlcache.patch	\
   %D%/packages/patches/qtlocation-5.15.8-mapboxgl-gcc13.patch	\
   %D%/packages/patches/qtwebengine-revert-egl.patch		\
+  %D%/packages/patches/qtwebengine5-python312-six-compat.patch	\
   %D%/packages/patches/quodlibet-disable-bundled-packages.patch	\
   %D%/packages/patches/qxlsx-fix-include-directory.patch	\
   %D%/packages/patches/schiffbruch-fix-build-for-gcc-13.patch	\
@@ -2171,6 +2188,8 @@ dist_patch_DATA =						\
   %D%/packages/patches/perl-www-curl-remove-symbol.patch	\
   %D%/packages/patches/perl-xml-libxml-fix-function-prototypes.patch	\
   %D%/packages/patches/phoronix-test-suite-fsdg.patch		\
+  %D%/packages/patches/php-01-fix-expired-certificate.patch	\
+  %D%/packages/patches/php-02-fix-sni-tests.patch		\
   %D%/packages/patches/picprog-non-intel-support.patch		\
   %D%/packages/patches/pidgin-add-search-path.patch		\
   %D%/packages/patches/pinball-system-ltdl.patch		\
@@ -2238,6 +2257,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-piexif-fix-tests-with-pillow-7.2.patch	\
   %D%/packages/patches/python-pillow-CVE-2022-45199.patch	\
   %D%/packages/patches/python-libxml2-utf8.patch		\
+  %D%/packages/patches/python-lsp-server-python-3.13-compatibility.patch	\
   %D%/packages/patches/python-memcached-syntax-warnings.patch	\
   %D%/packages/patches/python-mslice-matplotlib-3.6-compatibility.patch	\
   %D%/packages/patches/python-packaging-test-arch.patch		\
@@ -2253,6 +2273,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-pytorch-system-libraries.patch	\
   %D%/packages/patches/python-pytorch-without-kineto.patch	\
   %D%/packages/patches/python-robotframework-sshlibrary-rf5-compat.patch \
+  %D%/packages/patches/python-py-ubjson-recursion-test.patch	\
   %D%/packages/patches/python-vaex-core-fix-tsl-use.patch	\
   %D%/packages/patches/python-vega-datasets-remove-la-riots-code.patch	\
   %D%/packages/patches/python-versioneer-guix-support.patch	\
@@ -2274,8 +2295,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/qtbase-5-use-TZDIR.patch			\
   %D%/packages/patches/qtscript-disable-tests.patch		\
   %D%/packages/patches/quagga-reproducible-build.patch          \
-  %D%/packages/patches/quickjs-ng-64-bits-precision-on-i686.patch	\
-  %D%/packages/patches/quickjs-ng-fix-atomics.pause-on-32-bit.patch	\
   %D%/packages/patches/quilt-grep-compat.patch 			\
   %D%/packages/patches/qmk-firmware-fix-hacker-dvorak.patch 	\
   %D%/packages/patches/qtwayland-update-wayland-xml.patch	\
@@ -2349,8 +2368,16 @@ dist_patch_DATA =						\
   %D%/packages/patches/renpy-fix-integer-slots.patch			\
   %D%/packages/patches/reposurgeon-add-missing-docbook-files.patch	\
   %D%/packages/patches/rdkit-unbundle-external-dependencies.patch	\
+  %D%/packages/patches/r-biostrings-r4.6.0-compat.patch		\
+  %D%/packages/patches/r-h5mread-0001-h5mread-1.3.2-Get-rid-of-non-API-calls-to-R.patch \
   %D%/packages/patches/r-httpuv-1.6.6-unvendor-libuv.patch	\
+  %D%/packages/patches/r-mscoreutils-0001-fix-non-API-call-to-R-SETLENGTH-by-using-lengthgets.patch \
+  %D%/packages/patches/r-rsamtools-r-4.6.0-compat.patch		\
+  %D%/packages/patches/r-snpstats-0001-fixed-non-API-except-for-IS_S4_OBJECT.patch \
+  %D%/packages/patches/r-snpstats-0002-fixed-IS_S4_OBJECT.patch \
   %D%/packages/patches/r-sapa-lapack.patch			\
+  %D%/packages/patches/r-shortread-0001-ShortRead-1.69.3-Get-rid-of-non-API-calls-to-R.patch \
+  %D%/packages/patches/r-sparsearray-r-4.6.0-compat.patch	\
   %D%/packages/patches/ripperx-missing-file.patch		\
   %D%/packages/patches/rpcbind-CVE-2017-8779.patch		\
   %D%/packages/patches/rtosc-0.3.1-fix-invalid-comparison-operator.patch	\
@@ -2391,15 +2418,13 @@ dist_patch_DATA =						\
   %D%/packages/patches/rust-1.78-unwinding-fix.patch		\
   %D%/packages/patches/rust-1.81-fix-riscv64-bootstrap.patch	\
   %D%/packages/patches/rust-candle-0.9.1-add-candle-onnx-to-workspace.patch	\
-  %D%/packages/patches/rust-codex-0.98.0-core-remove-self-dep.patch	\
   %D%/packages/patches/rust-codex-0.98.0-test-shebangs.patch	\
-  %D%/packages/patches/rust-codex-0.98.0-test-timeout.patch	\
-  %D%/packages/patches/rust-codex-0.98.0-windows-sandbox-protocol-version.patch	\
   %D%/packages/patches/rust-codex-0.117.0-core-remove-self-dep.patch	\
-  %D%/packages/patches/rust-codex-0.120.0-core-remove-self-dep.patch	\
-  %D%/packages/patches/rust-codex-0.120.0-connectors-cache-test-race.patch	\
   %D%/packages/patches/rust-codex-0.120.0-remove-libwebrtc.patch	\
   %D%/packages/patches/rust-codex-0.120.0-test-timeout.patch	\
+  %D%/packages/patches/rust-codex-0.124.0-code-mode-stub-toolname.patch	\
+  %D%/packages/patches/rust-codex-0.124.0-remove-patch-sections.patch	\
+  %D%/packages/patches/rust-librocksdb-sys-unbundled-sources.patch	\
   %D%/packages/patches/rust-ring-0.17-ring-core.patch		\
   %D%/packages/patches/rw-igraph-0.10.patch			\
   %D%/packages/patches/rxvt-unicode-fix-cursor-position.patch	\
@@ -2409,7 +2434,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/sajson-build-with-gcc10.patch		\
   %D%/packages/patches/sane-look-for-plugins-in-SANE_BACKEND_LIB_PATH.patch	\
   %D%/packages/patches/sbc-fix-build-non-x86.patch		\
-  %D%/packages/patches/sbcl-fix-arm64-shared-lib.patch		\
   %D%/packages/patches/sbcl-aserve-add-HTML-5-elements.patch	\
   %D%/packages/patches/sbcl-aserve-fix-rfe12668.patch	\
   %D%/packages/patches/sbcl-burgled-batteries3-fix-signals.patch	\
@@ -2435,7 +2459,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/seq24-rename-mutex.patch			\
   %D%/packages/patches/libsequoia-fix-ffi-Makefile.patch	\
   %D%/packages/patches/libsequoia-remove-store.patch		\
-  %D%/packages/patches/shakespeare-spl-fix-grammar.patch		\
   %D%/packages/patches/shared-mime-info-xdgmime-path.patch	\
   %D%/packages/patches/sharutils-CVE-2018-1000097.patch		\
   %D%/packages/patches/showtime-python-3.11-compat.patch        \
@@ -2505,7 +2528,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/texmacs-wayland-hidpi.patch	\
   %D%/packages/patches/tflite-micro_disable_download.patch 	\
   %D%/packages/patches/thefuck-test-environ.patch		\
-  %D%/packages/patches/thefuck-remove-broken-tests.patch	\
   %D%/packages/patches/tidy-CVE-2015-5522+5523.patch		\
   %D%/packages/patches/timewarrior-time-sensitive-tests.patch	\
   %D%/packages/patches/tinydir-fix-cbehave-test.patch		\
@@ -2521,6 +2543,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/transcode-ffmpeg.patch	\
   %D%/packages/patches/trytond-add-guix_trytond_path.patch	\
   %D%/packages/patches/ttf2eot-cstddef.patch			\
+  %D%/packages/patches/tuir-python-3.12-support.patch	\
   %D%/packages/patches/tuxpaint-stamps-path.patch		\
   %D%/packages/patches/tvm_fix_cpptest_build.patch              \
   %D%/packages/patches/twinkle-bcg729.patch			\
@@ -2598,6 +2621,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/webrtc-audio-processing-big-endian.patch	\
   %D%/packages/patches/webrtc-audio-processing-byte-order-pointer-size.patch \
   %D%/packages/patches/webrtc-audio-processing-x86-no-sse.patch	\
+  %D%/packages/patches/websocketpp-boost-compat.patch		\
   %D%/packages/patches/websocketpp-fix-for-cmake-3.15.patch	\
   %D%/packages/patches/wmctrl-64-fix.patch			\
   %D%/packages/patches/wmfire-dont-inline-draw-fire.patch	\

gnu/machine/hetzner.scm

@@ -2,6 +2,7 @@
 ;;; Copyright © 2024 Roman Scherer <roman@burningswell.com>
 ;;; Copyright © 2025 Owen T. Heisler <writer@owenh.net>
 ;;; Copyright © 2025 Remco van 't Veer <remco@remworks.net>
+;;; Copyright © 2026 Maxim Cournoyer <maxim@guixotic.coop>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -36,6 +37,7 @@
   #:use-module (gnu system)
   #:use-module (guix base32)
   #:use-module (guix colors)
+  #:use-module (guix deprecation)
   #:use-module (guix derivations)
   #:use-module (guix diagnostics)
   #:use-module (guix gexp)
@@ -55,6 +57,7 @@
   #:use-module (ice-9 string-fun)
   #:use-module (ice-9 textual-ports)
   #:use-module (json)
+  #:use-module ((rnrs base) #:select (assert))
   #:use-module (srfi srfi-1)
   #:use-module (srfi srfi-2)
   #:use-module (srfi srfi-34)
@@ -66,8 +69,10 @@
   #:use-module (ssh session)
   #:use-module (ssh sftp)
   #:use-module (ssh shell)
-  #:export (%hetzner-os-arm
-            %hetzner-os-x86
+  #:export (%hetzner-os-arm             ;deprecated
+            %hetzner-os-x86             ;deprecated
+            make-hetzner-os
+
             deploy-hetzner
             hetzner-configuration
             hetzner-configuration-allow-downgrades?
@@ -82,6 +87,7 @@
             hetzner-configuration-server-type
             hetzner-configuration-ssh-key
             hetzner-configuration-ssh-public-key
+            hetzner-configuration-user
             hetzner-configuration?
             hetzner-environment-type))
 
@@ -98,7 +104,7 @@
 
 ;; Operating system for arm servers using UEFI boot mode.
 
-(define %hetzner-os-arm
+(define %hetzner-os-arm/efi
   (operating-system
     (host-name "guix-arm")
     (bootloader
@@ -128,9 +134,9 @@
 
 ;; Operating system for x86 servers using BIOS boot mode.
 
-(define %hetzner-os-x86
+(define %hetzner-os-x86/bios
   (operating-system
-    (inherit %hetzner-os-arm)
+    (inherit %hetzner-os-arm/efi)
     (host-name "guix-x86")
     (bootloader
      (bootloader-configuration
@@ -146,6 +152,51 @@
              (type "ext4"))
            %base-file-systems))))
 
+(define %hetzner-os-x86/efi
+  (operating-system
+    (inherit %hetzner-os-arm/efi)
+    (host-name "guix-x86")
+    (initrd-modules
+     (cons "virtio_scsi" %base-initrd-modules))))
+
+(define (server-type-name->arch type-name)
+  "Return a symbol corresponding to the server type architecture, e.g.
+@code{'x86} or @code{'arm}."
+  (cond
+    ((string-prefix-ci? "cax" type-name)
+     'arm)
+    (else
+     'x86)))
+
+(define (server-type-name->bootloader type-name)
+  "Return a symbol corresponding to the bootloader type, e.g.
+@code{'efi} or @code{'bios}."
+  (if (eq? 'arm (server-type-name->arch type-name))
+      'efi
+      (cond
+       ((string-prefix-ci? "cx" type-name)
+        'bios)                          ;old, cost-optimized x86 servers
+       (else
+        'efi))))           ;newer, regular performance/general purpose servers
+
+(define* (make-hetzner-os server-type-name)
+  "Return an operating server customized for SERVER-TYPE-NAME, a string like
+\"cx23\" or \"cax11\", denoting the Hetzner virtual server type."
+  (match (server-type-name->arch server-type-name)
+    ('arm %hetzner-os-arm/efi)
+    ('x86
+     (match (server-type-name->bootloader server-type-name)
+       ('bios %hetzner-os-x86/bios)
+       ('efi %hetzner-os-x86/efi)))))
+
+(define-deprecated %hetzner-os-x86
+  make-hetzner-os
+  %hetzner-os-x86/bios)
+
+(define-deprecated %hetzner-os-arm
+  make-hetzner-os
+  %hetzner-os-arm/efi)
+
 (define (operating-system-authorize os)
   "Authorize the OS with the public signing key of the current machine."
   (if (file-exists? %public-key-file)
@@ -191,6 +242,11 @@ Have you run 'guix archive --generate-key'?")
 ;;; Hetzner configuration.
 ;;;
 
+;;; This parameter overrides the value returned by
+;;; `hetzner-configuration-ssh-key'.
+(define %hetzner-ssh-key-file
+  (make-parameter #f))
+
 (define-record-type* <hetzner-configuration> hetzner-configuration
   make-hetzner-configuration hetzner-configuration? this-hetzner-configuration
   (allow-downgrades? hetzner-configuration-allow-downgrades? ; boolean
@@ -202,7 +258,7 @@ Have you run 'guix archive --generate-key'?")
   (build-locally? hetzner-configuration-build-locally? ; boolean
                   (default #t))
   (delete? hetzner-configuration-delete? ; boolean
-           (default #f))
+           (default #t))
   (labels hetzner-configuration-labels ; list of strings
           (default '()))
   (location hetzner-configuration-location ; #f | string
@@ -213,26 +269,39 @@ Have you run 'guix archive --generate-key'?")
         (default #t))
   (ipv6 hetzner-configuration-ipv6      ; boolean | string
         (default #t))
-  (ssh-public-key hetzner-configuration-ssh-public-key ; public-key | string
+  (ssh-public-key hetzner-configuration-ssh-public-key* ; #f | public-key | string
                   (thunked)
-                  (default (public-key-from-file (hetzner-configuration-ssh-key this-hetzner-configuration)))
-                  (sanitize
-                   (lambda (value)
-                     (if (string? value) (public-key-from-file value) value))))
-  (ssh-key hetzner-configuration-ssh-key
-           (default #f))) ; #f | string
+                  (default (and=> (hetzner-configuration-ssh-key
+                                   this-hetzner-configuration)
+                                  public-key-from-file))
+                  (sanitize (lambda (value)
+                              (if (string? value)
+                                  (public-key-from-file value)
+                                  value))))
+  (ssh-key hetzner-configuration-ssh-key* ; #f | string
+           (default #f))
+  (user hetzner-configuration-user      ;string
+        (default "root")))
 
-(define (hetzner-configuration-ssh-key-fingerprint config)
-  "Return the SSH public key fingerprint of CONFIG as a string."
-  (and-let* ((pubkey (hetzner-configuration-ssh-public-key config))
-             (hash (get-public-key-hash pubkey 'md5)))
+(define (hetzner-configuration-ssh-key config)
+  (or (%hetzner-ssh-key-file)
+      (hetzner-configuration-ssh-key* config)))
+
+(define (hetzner-configuration-ssh-public-key config)
+  (or (and=> (%hetzner-ssh-key-file) public-key-from-file)
+      (hetzner-configuration-ssh-public-key* config)))
+
+(define (public-key->fingerprint public-key)
+  "Return the SSH public key fingerprint of PUBLIC-KEY, a Guile-SSH public key
+object, in the expected format for the Hetzner API."
+  (let ((hash (get-public-key-hash public-key 'md5)))
     (bytevector->hex-string hash)))
 
-(define (hetzner-configuration-ssh-key-public config)
-  "Return the SSH public key of CONFIG as a string."
-  (let ((public-key (hetzner-configuration-ssh-public-key config)))
-    (format #f "ssh-~a ~a" (get-key-type public-key)
-            (public-key->string public-key))))
+(define (public-key->string-with-type public-key)
+  "Return the SSH public key string of PUBLIC-KEY, a Guile-SSH public key
+object, in the expected format for the Hetzner API."
+  (format #f "ssh-~a ~a" (get-key-type public-key)
+          (public-key->string public-key)))
 
 
 ;;;
@@ -245,21 +314,26 @@ Have you run 'guix archive --generate-key'?")
          ;; Get the operating system WITHOUT the provenance service to avoid a
          ;; duplicate symlink conflict in the store.
          (os ((@@ (gnu machine) %machine-operating-system) target)))
-    (machine
-     (inherit target)
-     (operating-system
-       (if (hetzner-configuration-authorize? config)
-           (operating-system-authorize os)
-           os))
-     (environment managed-host-environment-type)
-     (configuration
-      (machine-ssh-configuration
-       (allow-downgrades? (hetzner-configuration-allow-downgrades? config))
-       (authorize? (hetzner-configuration-authorize? config))
-       (build-locally? (hetzner-configuration-build-locally? config))
-       (host-name (hetzner-server-public-ipv4 server))
-       (identity (hetzner-configuration-ssh-key config))
-       (system (hetzner-server-system server)))))))
+    (match-record config <hetzner-configuration>
+                  ( authorize? allow-downgrades? build-locally? user)
+      (machine
+        (inherit target)
+        (operating-system
+          (if authorize?
+              (operating-system-authorize os)
+              os))
+        (environment managed-host-environment-type)
+        (configuration
+         (machine-ssh-configuration
+           (allow-downgrades? allow-downgrades?)
+           (authorize? authorize?)
+           (build-locally? build-locally?)
+           (host-name (hetzner-server-public-ipv4 server))
+           ;; XXX: match-record doesn't make use of custom accessors to obtain
+           ;; the value, so we can't bind SSH-KEY with it.
+           (identity (hetzner-configuration-ssh-key config))
+           (system (hetzner-server-system server))
+           (user user)))))))
 
 (define (hetzner-machine-location machine)
   "Find the location of MACHINE on the Hetzner API."
@@ -363,45 +437,43 @@ Available locations:~%~%~a~%~%For more details, see: ~a")
   "Return the form to bootstrap an operating system on SERVER."
   (let* ((os (machine-operating-system machine))
          (system (hetzner-server-system server))
+         (type-name (hetzner-server-type-name (hetzner-server-type server)))
          (arm? (equal? "arm" (hetzner-server-architecture server)))
          (x86? (equal? "x86" (hetzner-server-architecture server)))
+         (efi? (equal? 'efi (server-type-name->bootloader type-name)))
          (root-fs-type (operating-system-root-file-system-type os)))
     `(operating-system
        (host-name ,(operating-system-host-name os))
        (timezone "Etc/UTC")
        (bootloader (bootloader-configuration
-                    (bootloader ,(cond (arm? 'grub-efi-bootloader)
-                                       (x86? 'grub-bootloader)))
-                    (targets ,(cond (arm? '(list "/boot/efi"))
-                                    (x86? '(list "/dev/sda"))))
-                    (terminal-outputs '(console))))
+                     (bootloader ,(if efi?
+                                      'grub-efi-bootloader
+                                      'grub-bootloader))
+                     (targets ,(if efi?
+                                   '(list "/boot/efi")
+                                   '(list "/dev/sda")))
+                     (terminal-outputs '(console))))
        (initrd-modules (append
                         ,(cond (arm? '(list "sd_mod" "virtio_scsi"))
                                (x86? '(list "virtio_scsi")))
                         %base-initrd-modules))
-       (file-systems ,(cond
-                       (arm? `(cons* (file-system
-                                       (mount-point "/")
-                                       (device "/dev/sda1")
-                                       (type ,root-fs-type))
-                                     (file-system
-                                       (mount-point "/boot/efi")
-                                       (device "/dev/sda15")
-                                       (type "vfat"))
-                                     %base-file-systems))
-                       (x86? `(cons* (file-system
-                                       (mount-point "/")
-                                       (device "/dev/sda1")
-                                       (type ,root-fs-type))
-                                     %base-file-systems))))
+       (file-systems (cons* (file-system
+                              (mount-point "/")
+                              (device "/dev/sda1")
+                              (type ,root-fs-type))
+                            ,@(if efi?
+                                  '((file-system
+                                      (mount-point "/boot/efi")
+                                      (device "/dev/sda15")
+                                      (type "vfat")))
+                                  '())
+                            %base-file-systems))
        (services
-        ;; guix 1.4.0 does not have dhcpcd-service-type,
-        ;; so we use dhcp-client-service-type here.
-        (cons* (service dhcp-client-service-type)
+        (cons* (service dhcpcd-service-type)
                (service openssh-service-type
                         (openssh-configuration
-                         (openssh openssh-sans-x)
-                         (permit-root-login 'prohibit-password)))
+                          (openssh openssh-sans-x)
+                          (permit-root-login 'prohibit-password)))
                %base-services)))))
 
 (define (rexec-verbose session cmd)
@@ -423,8 +495,9 @@ values: list of output lines returned by CMD and its exit code."
 
 (define (hetzner-machine-ssh-key machine)
   "Find the SSH key for MACHINE on the Hetzner API."
-  (let* ((config (machine-configuration machine))
-         (expected (hetzner-configuration-ssh-key-fingerprint config)))
+  (and-let* ((config (machine-configuration machine))
+             (public-key (hetzner-configuration-ssh-public-key config))
+             (expected (public-key->fingerprint public-key)))
     (find (lambda (ssh-key)
             (equal? expected (hetzner-ssh-key-fingerprint ssh-key)))
           (hetzner-api-ssh-keys
@@ -437,10 +510,12 @@ values: list of output lines returned by CMD and its exit code."
     (format #t "creating ssh key for '~a'...\n" name)
     (let* ((config (machine-configuration machine))
            (api (hetzner-configuration-api config))
+           (pubkey (hetzner-configuration-ssh-public-key config))
+           (_ (assert pubkey))
            (ssh-key (hetzner-api-ssh-key-create
-                     (hetzner-configuration-api config)
-                     (hetzner-configuration-ssh-key-fingerprint config)
-                     (hetzner-configuration-ssh-key-public config)
+                     api
+                     (public-key->fingerprint pubkey)
+                     (public-key->string-with-type pubkey)
                      #:labels (hetzner-configuration-labels config))))
       (format #t "successfully created ssh key for '~a'\n" name)
       ssh-key)))
@@ -466,6 +541,16 @@ values: list of output lines returned by CMD and its exit code."
     (formatted-message (G_ "primary ip '~a' does not exist.")
                        name))))
 
+(define temporary-ssh-key-file
+  (let ((ssh-key-file (port-filename (mkstemp "/tmp/hetzner-key-XXXXXX")))
+        (ssh-key #f))
+    (lambda ()
+      "Return a dynamically created, temporary private SSH key."
+      (unless ssh-key
+        (set! ssh-key (make-keypair 'ed25519))
+        (private-key-to-file ssh-key ssh-key-file))
+      ssh-key-file)))
+
 (define (hetzner-machine-create-server machine)
   "Create the Hetzner server for MACHINE."
   (let* ((config (machine-configuration machine))
@@ -473,13 +558,14 @@ values: list of output lines returned by CMD and its exit code."
          (server-type (hetzner-configuration-server-type config)))
     (format #t "creating '~a' server for '~a'...\n" server-type name)
     (let* ((ssh-key (hetzner-machine-ssh-key machine))
+           (_ (assert ssh-key))         ;required during provisioning
            (ipv4 (hetzner-configuration-ipv4 config))
            (ipv6 (hetzner-configuration-ipv6 config))
            (api (hetzner-configuration-api config))
            (server (hetzner-api-server-create
                     api
                     (machine-display-name machine)
-                    (list ssh-key)
+                    #:ssh-keys (list ssh-key)
                     #:ipv4 (if (string? ipv4)
                                (hetzner-primary-ip-id (hetzner-resolve-ip api ipv4))
                                ipv4)
@@ -527,13 +613,15 @@ values: list of output lines returned by CMD and its exit code."
     (write-known-host! ssh-session)))
 
 (define (hetzner-machine-enable-rescue-system machine server)
-  "Enable the rescue system on the Hetzner SERVER for MACHINE."
+  "Enable the rescue system on the Hetzner SERVER for MACHINE, provisioning it
+with the configured SSH key, or a dynamically created temporary one."
   (let* ((name (machine-display-name machine))
          (config (machine-configuration machine))
          (api (hetzner-configuration-api config))
-         (ssh-keys (list (hetzner-machine-ssh-key machine))))
+         (ssh-keys (and=> (hetzner-machine-ssh-key machine) list)))
     (format #t "enabling rescue system on '~a'...\n" name)
-    (let ((action (hetzner-api-server-enable-rescue-system api server ssh-keys)))
+    (let ((action (hetzner-api-server-enable-rescue-system
+                   api server #:ssh-keys ssh-keys)))
       (format #t "successfully enabled rescue system on '~a'\n" name)
       action)))
 
@@ -569,6 +657,7 @@ values: list of output lines returned by CMD and its exit code."
 (set! hetzner-machine-ssh-run-script hetzner-machine-ssh-run-script)
 
 (define (hetzner-machine-rescue-install-os machine ssh-session server)
+  "Init a minimal Guix System to bootstrap from."
   (let ((name (machine-display-name machine))
         (os (hetzner-machine-bootstrap-os-form machine server)))
     (format #t "installing guix operating system on '~a'...\n" name)
@@ -587,9 +676,9 @@ chmod 600 /mnt/root/.ssh/authorized_keys
 
 # Small instance don't have much disk space.  Bind mount the store of the
 # rescue system to the tmp directory of the new Guix system.
-mkdir -p /mnt/tmp/gnu/store
-mkdir -p /gnu/store
-mount --bind /mnt/tmp/gnu/store /gnu/store
+mkdir -p /mnt/tmp/gnu
+mkdir -p /gnu
+mount --bind /mnt/tmp/gnu /gnu
 
 wget -O /tmp/guix-install.sh https://guix.gnu.org/guix-install.sh
 chmod +x /tmp/guix-install.sh
@@ -665,7 +754,8 @@ apt-get install cloud-initramfs-growroot uidmap --assume-yes"))
       action)))
 
 (define (hetzner-machine-provision machine)
-  "Provision a server for MACHINE on the Hetzner Cloud service."
+  "Provision a Guix System bootstrap server for MACHINE on the Hetzner Cloud
+service."
   (with-exception-handler
       (lambda (exception)
         (let ((config (machine-configuration machine))
@@ -680,12 +770,10 @@ apt-get install cloud-initramfs-growroot uidmap --assume-yes"))
         (let ((ssh-session (hetzner-machine-wait-for-ssh machine server)))
           (hetzner-machine-rescue-install-packages machine ssh-session)
           (hetzner-machine-rescue-partition machine ssh-session)
-          (hetzner-machine-rescue-install-os machine ssh-session server)
-          (hetzner-machine-reboot machine server)
-          (sleep 5)
-          (hetzner-machine-authenticate-host machine server)
-          server)))
-    #:unwind? #t))
+          (hetzner-machine-rescue-install-os machine ssh-session server))
+        (hetzner-machine-reboot machine server)
+        (hetzner-machine-authenticate-host machine server)
+        server))))
 
 (define (machine-not-provisioned machine)
   (formatted-message
@@ -711,16 +799,47 @@ an environment type of 'hetzner-environment-type'."
 ;;; System deployment.
 ;;;
 
+(define (cleanup-temporary-ssh-key/maybe api ssh-key)
+  "Delete the temporary SSH private key file from the file system and the
+Hetzner API, if one was created used."
+  (when (%hetzner-ssh-key-file)
+    (format #t "cleaning up temporary ssh key~%")
+    (delete-file (%hetzner-ssh-key-file))
+    (%hetzner-ssh-key-file #f)
+    (hetzner-api-ssh-key-delete api ssh-key)))
+
 (define (deploy-hetzner machine)
   "Internal implementation of 'deploy-machine' for 'machine' instances with an
 environment type of 'hetzner-environment-type'."
   (hetzner-machine-validate machine)
-  (unless (hetzner-machine-ssh-key machine)
-    (hetzner-machine-ssh-key-create machine))
-  (let ((server (or (hetzner-machine-server machine)
-                    (hetzner-machine-provision machine))))
-    (deploy-machine (hetzner-machine-delegate machine server))))
 
+  (define server (hetzner-machine-server machine))
+  (define config (machine-configuration machine))
+  (define api (hetzner-configuration-api config))
+  (define ssh-key #f)                   ;hetzner API key
+
+  ;; Provisioning requires uploading an SSH key via the Hetzner API to
+  ;; authenticate non-interactively with the newly created server.
+  (unless server                        ;provisioning?
+    (unless (hetzner-configuration-ssh-public-key config)
+      (format #t "using a temporary ssh key for provisioning~%")
+      (%hetzner-ssh-key-file (temporary-ssh-key-file)))
+    (set! ssh-key (or (hetzner-machine-ssh-key machine)
+                      (hetzner-machine-ssh-key-create machine))))
+
+  ;; Cleaning-up here is a bit tricky, as `deploy-machine' returns a monadic
+  ;; value immediately, to be executed later; this means the clean-up must be
+  ;; delayed until monadic evaluation time.
+  (let* ((server (or server (hetzner-machine-provision machine)))
+         (delegate-machine (hetzner-machine-delegate machine server)))
+    ;; FIXME: The clean-up in the guard does not run even when
+    ;; `deploy-machine' fails.
+    (guard (c (#t (cleanup-temporary-ssh-key/maybe api ssh-key)
+                  (raise c)))
+      (mlet %store-monad
+          ((value (deploy-machine delegate-machine)))
+        (cleanup-temporary-ssh-key/maybe api ssh-key)
+        (return value)))))
 
 
 ;;;

gnu/machine/hetzner/http.scm

@@ -1,5 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2024 Roman Scherer <roman@burningswell.com>
+;;; Copyright © 2026 Maxim Cournoyer <maxim@guixotic.coop>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -19,6 +20,7 @@
 (define-module (gnu machine hetzner http)
   #:use-module (guix diagnostics)
   #:use-module (guix i18n)
+  #:use-module (guix memoization)
   #:use-module (guix records)
   #:use-module (ice-9 iconv)
   #:use-module (ice-9 match)
@@ -51,6 +53,7 @@
             hetzner-api-action-wait
             hetzner-api-actions
             hetzner-api-create-ssh-key
+            hetzner-api-images
             hetzner-api-locations
             hetzner-api-primary-ips
             hetzner-api-request-body
@@ -81,6 +84,23 @@
             hetzner-error-code
             hetzner-error-message
             hetzner-error?
+            hetzner-image?
+            hetzner-image-id
+            hetzner-image-type
+            hetzner-image-status
+            hetzner-image-name
+            hetzner-image-description
+            hetzner-image-disk-size
+            hetzner-image-created
+            hetzner-image-created-from
+            hetzner-image-bound-to
+            hetzner-image-os-flavor
+            hetzner-image-os-version
+            hetzner-image-rapid-deploy
+            hetzner-image-protection
+            hetzner-image-deprecated
+            hetzner-image-deleted
+            hetzner-image-architecture
             hetzner-ipv4-blocked?
             hetzner-ipv4-dns-ptr
             hetzner-ipv4-id
@@ -148,6 +168,7 @@
             hetzner-ssh-key?
             make-hetzner-action
             make-hetzner-error
+            make-hetzner-image
             make-hetzner-ipv4
             make-hetzner-ipv6
             make-hetzner-location
@@ -168,7 +189,19 @@
   (make-parameter (getenv "GUIX_HETZNER_API_TOKEN")))
 
 ;; Ideally this would be a Guix image. Maybe one day.
-(define %hetzner-default-server-image "debian-11")
+(define %hetzner-default-server-image
+  (mlambda (api)
+    "Return the latest Debian image available.  This image gets used for the
+initial system provisioning phase, before Guix System takes over."
+    (let ((debian-images (filter (lambda (image)
+                                   (string=? "debian"
+                                             (hetzner-image-os-flavor image)))
+                                 (hetzner-api-images api))))
+      (hetzner-image-name
+       (last (sort debian-images
+                   (lambda (x y)
+                     (< (string->number (hetzner-image-os-version x))
+                        (string->number (hetzner-image-os-version y))))))))))
 
 ;; Falkenstein, Germany
 (define %hetzner-default-server-location "fsn1")
@@ -290,6 +323,43 @@
   (server-type hetzner-server-type "server_type"
                json->hetzner-server-type)) ; <hetzner-server-type>
 
+(define-json-mapping <hetzner-image>
+  make-hetzner-image hetzner-image? json->hetzner-image
+  (id hetzner-image-id)                             ;integer
+  (type hetzner-image-type)                         ;string
+  (status hetzner-image-status)                     ;string
+  (name hetzner-image-name "name" (null-or identity)) ;string | null
+  (description hetzner-image-description)           ;string
+  (image-size hetzner-image-size "image_size"       ;number | null (GiB)
+              (null-or identity))
+  (disk-size hetzner-image-disk-size "disk_size")         ;number (GiB)
+  (created hetzner-image-created)                         ;string (date)
+  (created-from hetzner-image-created-from "created_from" ;object | null
+                (null-or json->hetzner-image-created-from))
+  (bound-to hetzner-image-bound-to "bound_to" (null-or identity)) ;integer | null
+  (os-flavor hetzner-image-os-flavor "os_flavor")               ;string
+  (os-version hetzner-image-os-version "os_version"             ;string | null
+              (null-or identity))
+  (rapid-deploy hetzner-image-rapid-deploy "rapid_deploy") ;boolean
+  (protection hetzner-image-protection "protection"        ;object
+              json->hetzner-image-protection)
+  (deprecated hetzner-image-deprecated)      ;string
+  (deleted hetzner-image-deleted "deleted" (null-or identity)) ;null | string
+  (architecture hetzner-image-architecture)) ;string
+
+(define (null-or parser)
+  (lambda (value)
+    (if (eq? 'null value)
+        *unspecified*
+	(parser value))))
+
+(define-json-type <hetzner-image-created-from>
+  (id)                                  ;integer
+  (name))                               ;string
+
+(define-json-type <hetzner-image-protection>
+  (delete))                             ;boolean
+
 (define-json-mapping <hetzner-server-type>
   make-hetzner-server-type hetzner-server-type? json->hetzner-server-type
   (architecture hetzner-server-type-architecture) ; string
@@ -598,11 +668,11 @@
   (apply hetzner-api-list api "/locations" "locations" json->hetzner-location options))
 
 (define* (hetzner-api-server-create
-          api name ssh-keys
-          #:key
+          api name #:key
+          ssh-keys
           (ipv4 #f)
           (ipv6 #f)
-          (image %hetzner-default-server-image)
+          (image (%hetzner-default-server-image api))
           (labels '())
           (location %hetzner-default-server-location)
           (server-type %hetzner-default-server-type)
@@ -620,7 +690,11 @@
                           ,@(if (integer? ipv6) `(("ipv6" . ,ipv6)) '())))
                         ("location" . ,location)
                         ("server_type" . ,server-type)
-                        ("ssh_keys" . ,(apply vector (map hetzner-ssh-key-id ssh-keys)))
+                        ,@(if ssh-keys
+                              `(("ssh_keys" .
+                                 ,(apply vector (map hetzner-ssh-key-id
+                                                     ssh-keys))))
+                              '())
                         ("start_after_create" . ,start-after-create?)))))
     (hetzner-api-action-wait api (hetzner-api-body-action body))
     (json->hetzner-server (assoc-ref body "server"))))
@@ -631,12 +705,15 @@
     (hetzner-api-action-wait api (hetzner-api-body-action body))))
 
 (define* (hetzner-api-server-enable-rescue-system
-          api server ssh-keys #:key (type "linux64"))
+          api server #:key ssh-keys (type "linux64"))
   "Enable the rescue system for SERVER with the Hetzner API."
-  (let* ((ssh-keys (apply vector (map hetzner-ssh-key-id ssh-keys)))
+  (let* ((ssh-keys (and ssh-keys
+                        (apply vector (map hetzner-ssh-key-id ssh-keys))))
          (body (hetzner-api-post
                 api (hetzner-server-path server "/actions/enable_rescue")
-                #:body `(("ssh_keys" . ,ssh-keys)
+                #:body `(,@(if ssh-keys
+                               `(("ssh_keys" . ,ssh-keys))
+                               '())
                          ("type" . ,type)))))
     (hetzner-api-action-wait api (hetzner-api-body-action body))))
 
@@ -687,3 +764,8 @@
   "Get server types from the Hetzner API."
   (apply hetzner-api-list api "/server_types" "server_types"
          json->hetzner-server-type options))
+
+(define* (hetzner-api-images api . options)
+  "Get image types from the Hetzner API."
+  (apply hetzner-api-list api "/images" "images"
+         json->hetzner-image options))

gnu/packages.scm

@@ -164,6 +164,12 @@ flags."
              %default-package-module-path
              channels-scm))))
 
+(define (strip-trailing-slash s)
+  ;; Strip the trailing slash of a string, if present.
+  (if (string-suffix? "/" s)
+      (string-drop-right s 1)
+      s))
+
 (define %patch-path
   ;; Define it after '%package-module-path' so that '%load-path' contains user
   ;; directories, allowing patches in $GUIX_PACKAGE_PATH to be found.
@@ -172,7 +178,7 @@ flags."
           (if (string=? directory %distro-root-directory)
               (string-append directory "/gnu/packages/patches")
               directory))
-        %load-path)))
+        (map strip-trailing-slash %load-path))))
 
 ;; This procedure is used by Emacs-Guix up to 0.5.1.1, so keep it for now.
 ;; See <https://github.com/alezost/guix.el/issues/30>.

gnu/packages/accessibility.scm

@@ -51,6 +51,7 @@
   #:use-module (gnu packages libusb)
   #:use-module (gnu packages java)
   #:use-module (gnu packages python)
+  #:use-module (gnu packages python-build)
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages tcl)
   #:use-module (gnu packages xml)
@@ -185,7 +186,9 @@ terminals.")
     (native-inputs
      (append
        (list clisp
-             python-cython
+             ;; See: <https://bugzilla.redhat.com/show_bug.cgi?id=2231865>.
+             python-cython-0
+             python-setuptools  ;remove with next update
              doxygen
              gettext-minimal)
        ;; icedtea doesn't build reliably on all architectures.

gnu/packages/acl.scm

@@ -37,7 +37,6 @@
   #:use-module (gnu packages)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix utils))
 
 (define-public acl

gnu/packages/admin.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2012-2025 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2012-2026 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2013 Cyril Roelandt <tipecaml@gmail.com>
 ;;; Copyright © 2014, 2015, 2016, 2018, 2019, 2020 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2014, 2015-2018, 2020-2023 Eric Bavier <bavier@posteo.net>
@@ -109,7 +109,6 @@
   #:use-module (guix build-system go)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system ruby)
@@ -744,7 +743,7 @@ manager.")
 (define-public swineherd
   (package
     (name "swineherd")
-    (version "0.0.4")
+    (version "0.0.5")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -753,7 +752,7 @@ manager.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0iij1pl0y410k1dk1ifa56dxmjb1blv0y3k5rxy794gwg6w6c480"))))
+                "1w3fvkdmqvbzqfx3xindm8qgam54wja46isgwasaiqmmhnla7p52"))))
     (build-system gnu-build-system)
     (arguments
      '(#:configure-flags '("--localstatedir=/var")
@@ -767,7 +766,7 @@ manager.")
            guile-netlink
            guile-3.0
            guix
-           shepherd-0.10))
+           shepherd-1.0))
     (home-page "https://github.com/BIMSBbioinfo/swineherd")
     (synopsis "System container manager")
     (description
@@ -1085,7 +1084,7 @@ console.")
 (define-public btop
   (package
     (name "btop")
-    (version "1.4.6")
+    (version "1.4.7")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1094,7 +1093,7 @@ console.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1nj58dbv3c0rj8fngldkyrmdmacmjnbg8ch1c07ik97kqnnzd3l7"))))
+                "0d3cr5l6gpcwhxgnrizny5b5kg6fys2hy9a58bc68w4n2hc040fy"))))
     (build-system gnu-build-system)
     (native-inputs (list lowdown))
     (arguments
@@ -1158,7 +1157,7 @@ on memory usage on GNU/Linux systems.")
 (define-public htop
   (package
     (name "htop")
-    (version "3.5.0")
+    (version "3.5.1")
     (source
      (origin
        (method git-fetch)
@@ -1166,7 +1165,7 @@ on memory usage on GNU/Linux systems.")
              (url "https://github.com/htop-dev/htop")
              (commit version)))
        (sha256
-        (base32 "1r07ri0dl9xz0jn1hc2g8q3l0q4clvnxs05yagpzsz0zigp4flj5"))
+        (base32 "187gyj081n6qsidll5wdri3jkr4m2i4m461z3xv03y342f5yj3lv"))
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (arguments
@@ -1972,7 +1971,7 @@ maintenance releases.")
 (define-public dhcpcd
   (package
     (name "dhcpcd")
-    (version "10.3.0")
+    (version "10.3.2")
     (source
      (origin
        (method git-fetch)
@@ -1981,7 +1980,7 @@ maintenance releases.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "058k8wbzbjb6mm6qklv40z1y4k6sdb4ysap1xk6pny1m1f9xkdax"))))
+        (base32 "1z5rpi0n2vwhkh3c4d0dxwp38fl18br58jpy7kzh97gzg3gpk5dl"))))
     (inputs (list bash-minimal coreutils-minimal eudev sed))
     (build-system gnu-build-system)
     (arguments
@@ -3406,7 +3405,7 @@ provides the following commands:
      ;; variable in the tests/import/cpan.scm test.
      (list (search-path-specification
             (variable "GUIX_PYTHONPATH")
-            (files (list "lib/python3.11/site-packages")))))
+            (files (list "lib/python3.12/site-packages")))))
     (home-page "https://www.ansible.com/")
     (synopsis "Radically simple IT automation")
     (description "Ansible aims to be a radically simple IT automation system.
@@ -3424,7 +3423,7 @@ modules and plugins that extend Ansible.")
 (define-public debops
   (package
     (name "debops")
-    (version "3.2.5")
+    (version "3.3.0")
     (source
      (origin
        (method git-fetch)
@@ -3433,7 +3432,7 @@ modules and plugins that extend Ansible.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "15wfhha2b315i15l40j3sylyvs3mdrfw5awzq4cix51l5jppx8z5"))
+        (base32 "0z6wck5kax5h2bjv1vw8pbd7fdcdhx87bj9fakh3h0rar9d2qksj"))
        (patches
         (search-patches "debops-setup-py-avoid-git.patch"))))
     (build-system pyproject-build-system)
@@ -3455,8 +3454,8 @@ modules and plugins that extend Ansible.")
            python-future
            python-gitpython
            python-jinja2
-           python-pyyaml
            python-pyxdg
+           python-pyyaml
            python-toml))
     (arguments
      (list
@@ -3471,7 +3470,7 @@ modules and plugins that extend Ansible.")
                          `("PATH" ":" prefix
                            ,(map dirname
                                  (map (cut search-input-file inputs <>)
-                                      (list "bin/ansible"
+                                      (list ;; "bin/ansible"    ;see above
                                             "bin/gpg"
                                             "bin/git"
                                             "bin/git-crypt"
@@ -3751,59 +3750,68 @@ summarizes network bandwidth by process and remote host.")
 (define-public munge
   (package
     (name "munge")
-    (version "0.5.14")
+    (version "0.5.18")
     (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/dun/munge/releases/"
-                                  "download/munge-" version "/munge-"
-                                  version ".tar.xz"))
+              (method git-fetch)
+              (uri (git-reference
+                     (url "https://github.com/dun/munge")
+                     (commit (string-append "munge-" version))))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "0h06sghb4rqvv1ywyd6mzsmbcgh712v6ygrff0gzm440y4ca41k6"))
+                "1b7gm680dlvmgvj9vxy7n0cqmnv1rl9n4563vasxdxx54f78j30s"))
               (modules '((guix build utils)))
               (snippet
-               '(begin
-                  ;; Don't insist on write access to /var.
-                  (substitute* "src/etc/Makefile.in"
-                    (("\\$\\(INSTALL\\)(.*)localstatedir" _ middle)
-                     (string-append "-$(INSTALL)" middle "localstatedir"))
-                    (("\\$\\(MKDIR_P\\) .*(local|run)statedir.*")
-                     ""))
-                  #t))))
+               ;; Don't insist on write access to /var.
+               #~(substitute* "src/etc/Makefile.am"
+                   (("\\$\\(MKDIR_P\\) .*(local|run)statedir.*" all)
+                    (string-append ": " all))))))
     (inputs
      (list openssl libgcrypt))
+    (native-inputs
+     (list autoconf
+           automake
+           libtool
+           procps))                               ;for tests
     (build-system gnu-build-system)
     (arguments
-     `(#:configure-flags
-       (list "--localstatedir=/var"
-             (string-append "--with-pkgconfigdir="
-                            (assoc-ref %outputs "out") "/lib/pkgconfig")
-             (string-append "--with-libgcrypt-prefix="
-                            (assoc-ref %build-inputs "libgcrypt"))
-             ,@(if (%current-target-system)
-                 ;; Assume yes on pipes when cross compiling.
-                 `("ac_cv_file__dev_spx=yes"
-                   "x_ac_cv_check_fifo_recvfd=yes")
-                 '()))
-       #:phases
-       (modify-phases %standard-phases
-         ;; XXX Many test series fail.  Some might be fixable, others do no-no
-         ;; things like invoking ‘sudo’.
-         (add-after 'unpack 'skip-failing-tests
-           (lambda _
-             (for-each (lambda (test)
-                         (substitute* "t/Makefile.in"
-                           (((string-append test "\\.t ")) "")))
-                       (list "0100-munged-lock"
-                             "0010-basic"
-                             "0011-munged-cmdline"
-                             "0012-munge-cmdline"
-                             "0013-unmunge-cmdline"
-                             "0101-munged-security-socket"
-                             "0102-munged-security-keyfile"
-                             "0103-munged-security-logfile"
-                             "0110-munged-origin-addr"))
-             #t)))))
+     (list #:configure-flags
+           #~(list "--localstatedir=/var"
+                   "--disable-static"
+                   #$@(if (%current-target-system)
+                          ;; Assume yes on pipes when cross compiling.
+                          `("ac_cv_file__dev_spx=yes"
+                            "x_ac_cv_check_fifo_recvfd=yes")
+                          '())
+
+                   ;; The '.pc' file is not installed when omitting this flag.
+                   (string-append "--with-pkgconfigdir="
+                                  #$output "/lib/pkgconfig"))
+           #:phases
+           #~(modify-phases %standard-phases
+               (add-before 'bootstrap 'pre-bootstrap
+                 (lambda _
+                   (for-each patch-shebang (find-files "build-aux"))))
+               (add-after 'unpack 'skip-failing-tests
+                 (lambda _
+                   ;; Pass '--force' to 'munged'; without it, it fails with "Socket
+                   ;; is inaccessible" due to the build directory not being
+                   ;; world-readable.
+                   (substitute* "tests/sharness.d/03-munged.sh"
+                     (("--group-update-time=-1" all)
+                      (string-append all " --force")))
+
+                   ;; The tests below invoke 'sudo' or have special expectations
+                   ;; about network interfaces.
+                   (for-each (lambda (test)
+                               (substitute* "tests/Makefile.am"
+                                 (((string-append test "\\.t "))
+                                  "")))
+                             (list "0100-munged-lock"
+                                   "0101-munged-security-socket"
+                                   "0102-munged-security-keyfile"
+                                   "0103-munged-security-logfile"
+                                   "0110-munged-origin-addr")))))))
     (home-page "https://dun.github.io/munge/")
     (synopsis "Cluster computing authentication service")
     (description
@@ -3918,6 +3926,18 @@ rules is done with the @code{auditctl} utility.")
                 (wrap-program (string-append ndiff "/bin/ndiff")
                   `("GUIX_PYTHONPATH" prefix
                     (,(python-path ndiff)))))))
+          (add-before 'check 'fix-tests-for-python-3.12
+            (lambda _
+              (substitute* "ndiff/ndifftest.py"
+                (("import imp")
+                 "import importlib.util")
+                (("ndiff = imp\\.load_source\\(\"ndiff\", \"ndiff\\.py\"\\)")
+                 (string-join
+                  '("spec = \
+importlib.util.spec_from_file_location(\"ndiff\", \"ndiff.py\")"
+                    "ndiff = importlib.util.module_from_spec(spec)"
+                    "spec.loader.exec_module(ndiff)")
+                  "\n")))))
           ;; These are the tests that do not require network access.
           (replace 'check
             (lambda* (#:key tests? #:allow-other-keys)
@@ -4047,51 +4067,59 @@ plug-in architecture to allow monitoring other system metrics.")
     (license license:gpl2+)))
 
 (define-public thefuck
-  (package
-    (name "thefuck")
-    (version "3.32")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/nvbn/thefuck")
-             (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "18ipa1bm6q1n5drbi8i65726hhqhl1g41390lfqrc11hkbvv443d"))
-       (patches (search-patches "thefuck-test-environ.patch"
-                                "thefuck-remove-broken-tests.patch"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'check 'pre-check
-            (lambda _
-              ;; Tests look for installed package
-              ;; Some tests need write access to $HOME.
-              (setenv "HOME" "/tmp")
-              ;; Even with that, this function tries to mkdir /.config.
-              (substitute* "tests/test_utils.py"
-                (("settings\\.init\\(\\)") "")))))))
-    (native-inputs
-     (list go
-           python-mock
-           python-pytest-8
-           python-pytest-mock
-           python-setuptools
-           python-wheel))
-    (inputs
-     (list python-colorama
-           python-decorator
-           python-psutil
-           python-pyte))
-    (home-page "https://github.com/nvbn/thefuck")
-    (synopsis "Correct mistyped console command")
-    (description
-     "The Fuck tries to match a rule for a previous, mistyped command, creates
+  ;; Latest release, 3.32, is not compatible with Python 3.12.
+  (let ((revision "0")
+        (commit "c7e7e1d884d3bb241ea6448f72a989434c2a35ec"))
+    (package
+      (name "thefuck")
+      (version (git-version "3.32" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+                (url "https://github.com/nvbn/thefuck")
+                (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1l3i2cpdf3vznpbzqw7b18l23xikqs7andx6yzqvm5415snaqg06"))
+         (patches (search-patches "thefuck-test-environ.patch"))))
+      (build-system pyproject-build-system)
+      (arguments
+       (list
+        #:test-flags
+        #~(list
+           "--deselect=tests/test_utils.py::TestGetValidHistoryWithoutCurrent"
+           "--ignore=tests/functional/conftest.py")
+        #:phases
+        #~(modify-phases %standard-phases
+            (add-before 'check 'pre-check
+              (lambda _
+                ;; ModuleNotFoundError: No module named 'pytest_docker_pexpect'
+                (delete-file "tests/functional/conftest.py")
+                ;; Tests look for installed package
+                ;; Some tests need write access to $HOME.
+                (setenv "HOME" "/tmp")
+                ;; Even with that, this function tries to mkdir /.config.
+                (substitute* "tests/test_utils.py"
+                  (("settings\\.init\\(\\)") "")))))))
+      (native-inputs
+       (list go
+             python-mock
+             ;; Uses test markers that are incompatible with pytest 9.
+             python-pytest-8
+             python-pytest-mock
+             python-setuptools))
+      (inputs
+       (list python-colorama
+             python-decorator
+             python-psutil
+             python-pyte))
+      (home-page "https://github.com/nvbn/thefuck")
+      (synopsis "Correct mistyped console command")
+      (description
+       "The Fuck tries to match a rule for a previous, mistyped command, creates
 a new command using the matched rule, and runs it.")
-    (license license:x11)))
+      (license license:x11))))
 
 (define-public di
   (package
@@ -4702,7 +4730,7 @@ information tool.")
 (define-public fastfetch-minimal
   (package
     (name "fastfetch-minimal")
-    (version "2.60.0")
+    (version "2.63.1")
     (source
      (origin
        (method git-fetch)
@@ -4711,7 +4739,7 @@ information tool.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "089577qgxd63zqzd00fz381bfpmj6pwlmy2zfan9r6gbm1jvj4i8"))
+        (base32 "13a5maf8jxyga5bga96s40binqp2i54pjlipsnqgfj85q01yzkg9"))
        (modules '((guix build utils)))
        (snippet '(begin
                    (delete-file-recursively "src/3rdparty")
@@ -7043,7 +7071,7 @@ network, which causes enabled computers to power on.")
 (define-public witr
   (package
     (name "witr")
-    (version "0.1.7")
+    (version "0.3.1")
     (source
      (origin
        (method git-fetch)
@@ -7052,7 +7080,7 @@ network, which causes enabled computers to power on.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "18xx01lxd5j019gy9jmpms3awv4snlr028w01bfkyfid6hlwxbq2"))))
+        (base32 "03v9n4mdvqm0knqjl4s64321i5clqpmlrlkkdb87glzb9p28sg00"))))
     (build-system go-build-system)
     (arguments
      (list

gnu/packages/aidc.scm

@@ -117,7 +117,7 @@ Features:
 (define-public python-zbarlight
   (package
     (name "python-zbarlight")
-    (version "3.0")
+    (version "4.0")
     (source
      (origin
        (method git-fetch)
@@ -126,7 +126,7 @@ Features:
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1radfpfhfhkx3xnz01bqr5l9pl2zv70zis6l2kw1gwqbfw65r6w6"))))
+        (base32 "1q1nfc7g7bl9y63fwvnq1fcgqk79inc2hhw3ilvyw0nk0g74v8cm"))))
     (build-system pyproject-build-system)
     (propagated-inputs (list python-pillow))
     (inputs (list zbar))

gnu/packages/algebra.scm

@@ -88,7 +88,6 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system pyproject)
-  #:use-module ((guix build-system python) #:select (pypi-uri))
   #:use-module (guix build-system r)
   #:use-module (guix download)
   #:use-module (guix gexp)
@@ -458,7 +457,7 @@ precision.")
     (inputs
      ;; TODO: Unbundle "libmicropython.a".
      (list ao
-           fltk-1.3
+           fltk
            glpk
            gmp
            gsl

gnu/packages/android.scm

@@ -41,7 +41,6 @@
   #:use-module (guix build-system emacs)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system go)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system trivial)
@@ -1230,28 +1229,35 @@ main repository.")
 (define-public fdroidcl
   (package
     (name "fdroidcl")
-    (version "0.7.0")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/mvdan/fdroidcl")
-                    (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1s3fszlyyab9gbdrg52zcbafsb1mgb770skg7b3gj7f3pzfnra5n"))))
+    (version "0.8.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/Hoverth/fdroidcl")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1bflahcsjarv4v6r61knl5gc5iydh1lwvqjgffhxr4pis4qfsqsa"))
+       ;; XXX: Reported upstream.
+       ;; See: <https://github.com/Hoverth/fdroidcl/pull/92>.
+       (patches (search-patches "fdroidcl-fix-tests.patch"))))
     (build-system go-build-system)
     (arguments
-     `(#:import-path "mvdan.cc/fdroidcl"
-       #:tests? #f                      ;requires internet access
-       #:install-source? #f))
-    (inputs (list go-github-com-kr-pretty go-github-com-schollz-progressbar-v3))
+     (list
+      #:install-source? #f
+      #:import-path "mvdan.cc/fdroidcl"))
+    (inputs
+     (list go-github-com-kr-pretty
+           go-github-com-pelletier-go-toml-v2
+           go-github-com-rogpeppe-go-internal
+           go-github-com-schollz-progressbar-v3))
+    (home-page "https://github.com/Hoverth/fdroidcl")
     (synopsis "F-Droid desktop client")
     (description
      "While the Android client integrates with the system with regular update
 checks and notifications, this is a simple command line client that talks to
 connected devices via ADB.")
-    (home-page "https://github.com/mvdan/fdroidcl")
     (license license:bsd-3)))
 
 (define-public emacs-fdroid

gnu/packages/animation.scm

@@ -238,12 +238,12 @@ contains the graphical user interface for synfig.")
              (when tests?
                (invoke "./tests")))))))
     (native-inputs
-     (list gettext-minimal
-           `(,glib "bin")
-           nasm
-           perl
-           pkg-config
-           python-wrapper))
+     (cons* gettext-minimal
+            `(,glib "bin")
+            perl
+            pkg-config
+            python-wrapper
+            (maybe-nasm)))
     (inputs
      (list cairo
            curl

gnu/packages/apparmor.scm

@@ -180,7 +180,7 @@ supported by Canonical since 2009.")
        (list libapparmor))
       ;; Python module `readline' needed
       (native-inputs
-       (list bison flex gettext-minimal perl python which))
+       (list bison flex gettext-minimal perl python python-setuptools which))
       (license license:gpl2))))
 
 (define-public pam-apparmor

gnu/packages/assembly.scm

@@ -2,7 +2,7 @@
 ;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2013, 2015 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2013 Andreas Enge <andreas@enge.fr>
-;;; Copyright © 2016, 2020, 2021, 2025 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2020, 2021, 2025, 2026 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2017–2022 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2019 Guy Fleury Iteriteka <hoonandon@gmail.com>
 ;;; Copyright © 2019, 2022, 2024 Andy Tai <atai@atai.org>
@@ -43,6 +43,7 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module (guix gexp)
+  #:use-module (guix utils)
   #:use-module (gnu packages)
   #:use-module (gnu packages admin)
   #:use-module (gnu packages autotools)
@@ -248,6 +249,16 @@ complex.  It supports all currently known x86 architectural extensions, and
 has strong support for macros.")
     (license license:bsd-2)))
 
+(define* (maybe-nasm #:optional
+                     (system (or (%current-target-system)
+                                 (%current-system))))
+  ;; For some packages nasm is only needed when compiling to/for x86/x86_64.
+  (if (target-x86? system)
+      (list nasm)
+      '()))
+
+(export maybe-nasm)
+
 (define-public yasm
   (package
     (name "yasm")

gnu/packages/audio.scm

@@ -51,7 +51,7 @@
 ;;; Copyright © 2024 Nikita Domnitskii <nikita@domnitskii.me>
 ;;; Copyright © 2024 Roman Scherer <roman@burningswell.com>
 ;;; Copyright © 2024 Sughosha <sughosha@disroot.org>
-;;; Copyright © 2025 Junker <dk@junkeria.club>
+;;; Copyright © 2025, 2026 Junker <dk@junkeria.club>
 ;;; Copyright © 2025 Sughosha <sughosha@disroot.org>
 ;;; Copyright © 2025 Andrew Wong <wongandj@icloud.com>
 ;;; Copyright © 2025 Kjartan Oli Agustsson <kjartanoli@outlook.com>
@@ -63,6 +63,7 @@
 ;;; Copyright © 2026 Noé Lopez <noelopez@free.fr>
 ;;; Copyright © 2026 Carlos Durán Domínguez <wurt@wurt.eu>
 ;;; Copyright © 2026 Daniel Martins <email@danielfm.me>
+;;; Copyright © 2026 Artyom V. Poptsov <poptsov.artyom@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -127,6 +128,7 @@
   #:use-module (gnu packages linphone)
   #:use-module (gnu packages linux)
   #:use-module (gnu packages llvm)
+  #:use-module (gnu packages logging)
   #:use-module (gnu packages machine-learning)
   #:use-module (gnu packages man)
   #:use-module (gnu packages maths)
@@ -135,7 +137,6 @@
   #:use-module (gnu packages music)
   #:use-module (gnu packages ncurses)
   #:use-module (gnu packages networking)
-  #:use-module (gnu packages ninja)
   #:use-module (gnu packages onc-rpc)
   #:use-module (gnu packages oneapi)
   #:use-module (gnu packages perl)
@@ -144,6 +145,7 @@
   #:use-module (gnu packages pretty-print)
   #:use-module (gnu packages python)
   #:use-module (gnu packages python-build)
+  #:use-module (gnu packages python-check)
   #:use-module (gnu packages python-crypto)
   #:use-module (gnu packages python-science)
   #:use-module (gnu packages python-web)
@@ -179,7 +181,6 @@
   #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system trivial)
@@ -194,6 +195,45 @@
   #:use-module (srfi srfi-26)
   #:use-module (ice-9 match))
 
+(define-public adplug
+  (package
+    (name "adplug")
+    (version "2.4")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/adplug/adplug")
+                    (commit (string-append "adplug-" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "0l31ya42g3q7ry2m0y5djgjb9ax8ciy8jn86252vdjkjswwqgscd"))))
+    (build-system cmake-build-system)
+    (arguments
+     (list #:configure-flags
+           #~(list "-DBUILD_SHARED_LIBS=ON")
+           #:modules
+           '((guix build cmake-build-system)
+             (guix build utils)
+             (srfi srfi-26))                 ;for cute
+           #:phases
+           #~(modify-phases %standard-phases
+               (add-after 'install 'install-headers
+                 (lambda _
+                   (for-each (cute install-file <>
+                                  (string-append #$output "/include/adplug"))
+                             (find-files "../source/src" "\\.h$")))))))
+    (propagated-inputs
+     (list libbinio))
+    (home-page "https://adplug.github.io/")
+    (synopsis "AdLib sound player library")
+    (description
+     "AdPlug is a hardware independent AdLib sound player library, mainly
+written in C++.  AdPlug plays sound data, originally created for the AdLib
+(OPL2/3) audio board, on top of an OPL2/3 emulator or by using the real
+hardware.  No OPL2/3 chips are required for playback.")
+    (license license:lgpl2.1+)))
+
 (define-public opensles
   (package
     (name "opensles")
@@ -780,7 +820,8 @@ Filter) modules follow the convention of 1V / Octave.")
                    "https://aubio.org/pub/aubio-" version ".tar.bz2"))
              (sha256
               (base32
-               "1npks71ljc48w6858l9bq30kaf5nph8z0v61jkfb70xb9np850nl"))))
+               "1npks71ljc48w6858l9bq30kaf5nph8z0v61jkfb70xb9np850nl"))
+             (patches (search-patches "aubio-waflib-python312-compat.patch"))))
     (build-system waf-build-system)
     (arguments
      (list
@@ -1210,7 +1251,7 @@ PulseAudio clients, featuring:
 (define-public ardour
   (package
     (name "ardour")
-    (version "9.1")
+    (version "9.2")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1227,7 +1268,7 @@ PulseAudio clients, featuring:
 namespace ARDOUR { const char* revision = \"" version "\" ; const char* date = \"\"; }")))))
               (sha256
                (base32
-                "00bramm8dq0ihr376n7l9rg0mjzxmzw6lxvsbsdlrdsimfwsy16p"))
+                "14s6cq3x7l7b682ah9k8cdr6plfirlgm882dc2nm51lxwl91zcfd"))
               (file-name (git-file-name name version))))
     (build-system waf-build-system)
     (arguments
@@ -3238,30 +3279,27 @@ synchronous execution of all clients, and low latency operation.")
   (package
     (inherit jack-1)
     (name "jack2")
-    (version "1.9.21")
+    ;; 1.9.22 does not compile with Python 3.12, use the latest commit instead.
+    (properties '((commit . "17959465a722225a36a8b612aed26764036f258e")
+                  (revision . "0")))
+    (version (git-version "1.9.22"
+                          (assoc-ref properties 'revision)
+                          (assoc-ref properties 'commit)))
     (source (origin
               (method git-fetch)
               (uri (git-reference
-                    (url "https://github.com/jackaudio/jack2")
-                    (commit (string-append "v" version))))
+                     (url "https://github.com/jackaudio/jack2")
+                     (commit (assoc-ref properties 'commit))))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0sbrffmdbajvrk7iqvsvrnwnpvmicvbjyq3f52r6ashdsznsz03b"))))
+                "18dbjq9y8mcp27j9aaqdlg4976hrisr7b88lk84ck09gmzlwqalp"))))
     (build-system waf-build-system)
     (arguments
      `(#:tests? #f                      ; no check target
        #:configure-flags '("--dbus" "--alsa")
        #:phases
        (modify-phases %standard-phases
-         ;; Python 3.11 has removed the 'U' (universal newline) mode.  It has
-         ;; been the default since Python 3.3.
-         (add-after 'unpack 'python-compatibility
-           (lambda _
-             (substitute* '("waflib/Context.py"
-                            "waflib/ConfigSet.py")
-               (("m='rU'") "m='r'")
-               (("read\\('rU'") "read('r'"))))
          (add-before 'configure 'set-linkflags
            (lambda _
              ;; Ensure -lstdc++ is the tail of LDFLAGS or the simdtests.cpp
@@ -3287,7 +3325,7 @@ synchronous execution of all clients, and low latency operation.")
            expat
            libsamplerate
            opus
-           python-dbus-1.2
+           python-dbus
            readline))
     (native-inputs
      (list pkg-config))
@@ -3430,7 +3468,7 @@ from being able to mix multiple JACK audio streams.")
 (define-public pipemixer
   (package
     (name "pipemixer")
-    (version "0.4.1")
+    (version "0.5.0")
     (source
      (origin
       (method git-fetch)
@@ -3439,19 +3477,8 @@ from being able to mix multiple JACK audio streams.")
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
-       (base32 "0fvnvr74q5khxlj5sylfnkblydmwgdbvj04mhdqw0zzmfqwignhd"))))
+       (base32 "104h2zdhqx5gdddnb7v7rhrflznh4v7d4g3s6vk2mxwf938zgm72"))))
     (build-system meson-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'fix-pw-device
-            (lambda _
-              (substitute* "src/pw/device.c"
-                ;; TODO: Report upstream:
-                ;; ../source/src/pw/device.c:328:80: error: expected
-                ;; ‘;’ before ‘{’ token
-                (("iter\\) \\{") "iter); {")))))))
     (native-inputs
      (list pkg-config))
     (inputs
@@ -3851,6 +3878,58 @@ provided by Pipewire.")
 cross-platform audio input/output stream library.")
     (license license:expat)))
 
+(define-public python-pyroomacoustics
+  (package
+    (name "python-pyroomacoustics")
+    (version "0.10.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/LCAV/pyroomacoustics")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0546506lg93nrybvilc4wgrgvn317w9zxv2jwikhpfy1i0qyrnkk"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      #~(list
+         ;; Want to download data from the internet:
+         "--ignore"
+         "pyroomacoustics/directivities/tests/test_sofa_directivities.py"
+         "--ignore"
+         "pyroomacoustics/datasets/tests/test_download_uncompress.py"
+         ;; May fail because of slight numerical imprecision.
+         "--ignore"
+         "pyroomacoustics/experimental/tests/test_measure_rt60.py")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'build 'set-extra-include-paths
+            (lambda* (#:key inputs #:allow-other-keys)
+              (setenv "CPLUS_INCLUDE_PATH"
+                      (string-append
+                       (search-input-directory inputs "include/eigen3")
+                       ":"
+                       (or (getenv "CPLUS_INCLUDE_PATH") ""))))))))
+    (propagated-inputs (list python-scipy))
+    (native-inputs (list eigen
+                         pybind11
+                         python-cython
+                         python-matplotlib
+                         python-numpy
+                         python-pytest
+                         python-setuptools
+                         python-sofa))
+    (inputs (list nanoflann))
+    (home-page "https://github.com/LCAV/pyroomacoustics")
+    (synopsis "Python library for room acoustics")
+    (description "@code{pyroomacoustics} is a framework for simulating the
+acustic behaviour of rooms, such as computing the impulse response using
+different simulation methods.")
+    (license license:expat)))
+
 (define-public python-pulsectl
   (package
     (name "python-pulsectl")
@@ -3955,6 +4034,40 @@ to send and receive OSC messages using a nice and simple Python API.  Also
 included are the command line utilities @code{send_osc} and @code{dump_osc}.")
     (license license:lgpl2.1+)))
 
+(define-public python-sofa
+  (package
+    (name "python-sofa")
+    (version "0.2.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/spatialaudio/python-sofa/")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0n6mdck2dawfm6napqhhxi8gjyvs6121pblcr7zjl37a8ldqvg29"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:tests? #f ;No tests
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'remove-wrong-dependency
+            (lambda _
+              (substitute* "setup.py"
+                (("'datetime'")
+                 "")))))))
+    (propagated-inputs (list python-netcdf4 python-numpy python-scipy))
+    (native-inputs (list python-setuptools))
+    (home-page "https://github.com/spatialaudio/python-sofa/")
+    (synopsis
+     "Python @acronym{Spatially Oriented Format for Acoustics, SOFA} API")
+    (description
+     "Python API for @acronym{Spatially Oriented Format for Acoustics, SOFA} files
+as specified in @url{https://www.sofaconventions.org, SOFA conventions}.")
+    (license license:expat)))
+
 (define-public python-soundfile
   (package
     (name "python-soundfile")
@@ -4090,9 +4203,7 @@ one-dimensional sample-rate conversion library.")
                  (string-append "'" #$(this-package-input "libsndfile")
                                 "/lib/libsndfile"))))))))
     (native-inputs
-     (list python-pytest
-           python-pytest-cov
-           python-setuptools))
+     (list python-pytest python-setuptools))
     (inputs
      (list libsndfile
            portaudio))
@@ -4465,6 +4576,33 @@ This includes device enumeration and initialization, file loading, and
 streaming.")
     (license license:expat)))
 
+(define-public wp-notifyd
+  (package
+    (name "wp-notifyd")
+    (version "1.1.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/LDAP/wp-notifyd")
+              (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1nkndz0li15maf0dc9x631p0dr8085wzz5358552wljv7chywrza"))))
+    (build-system meson-build-system)
+    (arguments
+     (list #:tests? #f)) ;there are no tests
+    (inputs (list libnotify
+                  wireplumber-minimal
+                  pipewire
+                  spdlog))
+    (native-inputs (list pkg-config))
+    (home-page "https://github.com/LDAP/wp-notifyd")
+    (synopsis "Notification daemon for Wireplumber")
+    (description "@command{wp-notifyd} is a lightweight notification daemon for
+@dfn{WirePlumber} (the session and policy manager for PipeWire).")
+    (license license:expat)))
+
 (define-public pa-notify
   (package
     (name "pa-notify")
@@ -4869,6 +5007,42 @@ using Guix System.")
     ;; GNU Library (not Lesser) General Public License.
     (license license:lgpl2.0+)))
 
+(define-public hiir
+  (let ((commit "4a9a1e67fa6f8ce7688e1c0c8a2b017cecd206a3")
+        (revision "0"))
+    (package
+      (name "hiir")
+      (version (git-version "0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/LostRobotMusic/hiir")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1wzlg0di768mzcik6fij4pd6dnpmbw8q236h478c057d10qfp44g"))))
+      (build-system copy-build-system)
+      (arguments
+       (list
+        #:install-plan
+        #~`(("." "/include/hiir"))))
+      (home-page "https://github.com/LostRobotMusic/hiir")
+      (synopsis "Header-only version of Laurent de Soras's HIIR 1.40 library")
+      (description
+       "This package provides a header-only version of the
+@uref{http://ldesoras.free.fr/prod.html#src_hiir, HIIR library by Laurent De
+Soras}, updated to version 1.40.  HIIR is a C++ library for changing the
+sampling rate of a signal by a factor two, in both directions (upsampling and
+downsampling), obtaining two signals with a π/2 phase difference (Hilbert
+transform).  It is made of a two-path polyphase IIR filter, implemented with
+FPU, 3DNow!, SSE, SSE2, AVX, AVX-512 and NEON instruction sets.
+
+This package contains the same as the original library, except with the
+contents of one source file moved into a header file (and set as inline) to
+make the library header-only, and with the test folder removed.")
+      (license license:wtfpl2))))
+
 (define-public redumper
   (package
     (name "redumper")
@@ -7029,32 +7203,6 @@ developing fully accurate DirectX Audio runtime libraries.")
            license:expat
            license:public-domain))))
 
-(define-public gnaural
-  (package
-    (name "gnaural")
-    (version "20110606")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "mirror://sourceforge/gnaural/Gnaural/gnaural_"
-                           version ".tar.xz"))
-       (sha256
-        (base32
-         "1gq519c0imsh57zklyi0f8h64l3ai48lh672c834470z8c6kvbfi"))))
-    (build-system gnu-build-system)
-    (inputs
-     (list alsa-lib gtk+-2 libsndfile portaudio))
-    (native-inputs
-     (list pkg-config))
-    (home-page "https://gnaural.sourceforge.net/")
-    (synopsis "Binaural beat synthesizer")
-    (description "Gnaural is a programmable auditory binaural beat synthesizer
-intended to be used for brainwave entrainment.  Gnaural supports creation of
-binaural beat tracks of different frequencies and exporting of tracks into
-different audio formats.  Gnaural can also be linked over the internet with
-other Gnaural instances, allowing synchronous sessions between many users.")
-    (license license:gpl2+)))
-
 (define-public darkice
   (package
     (name "darkice")
@@ -7265,6 +7413,7 @@ as is the case with audio plugins.")
                                        (find-files "bin")))))))))
     (inputs
      (list alsa-lib
+           bash-minimal
            ffmpeg
            fluidsynth
            file
@@ -7322,8 +7471,8 @@ default and preferred audio driver but also supports native drivers like ALSA.")
 
 ;;; This package variant tracks the latest in-development 2.6 release.
 (define-public carla-2.6
-  (let ((commit "aa400535b31c67f4b6c1b28e6e20e4d4f82111a3")
-        (revision "0"))
+  (let ((commit "294a80145e39c0755ab9073d90fd8b9524fbfc84")
+        (revision "1"))
     (package
       (inherit carla)
       (name "carla")
@@ -7337,7 +7486,12 @@ default and preferred audio driver but also supports native drivers like ALSA.")
            (commit commit)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "0cnj2sgr60f5h6wdfmihc214wf3n74686sipl3iyzmylqrcyhbjn")))))))
+          (base32 "053yfwf9l9vqvq95c354by6nm8ym0wgkv3fr1434x5w9n1344z0z"))))
+      (inputs
+       (modify-inputs (package-inputs carla)
+         (replace "python-pyqt" python-pyqt-6)
+         (replace "qtbase" qtbase)
+         (replace "qtwayland" qtwayland))))))
 
 ;; This source is a fork of vst3sdk with the documentation and VSTGUI
 ;; submodules removed and a dummy `meson.build` file that just lists all
@@ -7827,60 +7981,59 @@ Rate} 3600x2250 bit/s vocoder used in various radio systems.")
                   (delete-file-recursively "third_party")
                   (delete-file-recursively "modules")))))
     (build-system cmake-build-system)
+    (arguments
+     (list
+      #:configure-flags
+      #~(list "-DLINK_BUILD_QT_EXAMPLES=ON"
+              "-DLINK_BUILD_JACK=ON")
+      #:phases
+      #~(modify-phases %standard-phases
+          (replace 'check
+            (lambda* (#:key inputs tests? #:allow-other-keys)
+              (when tests?
+                (let* ((python (search-input-file inputs "/bin/python3"))
+                       (run-tests "../source/ci/run-tests.py"))
+                  (invoke python run-tests "--target" "LinkCoreTest")
+                  (invoke python run-tests "--target" "LinkDiscoveryTest")))))
+          (add-before 'install 'patch-cmake
+            (lambda* (#:key inputs #:allow-other-keys)
+              (let* ((source "../source/"))
+                (substitute* (string-append source
+                                            "cmake_include/AsioStandaloneConfig.cmake")
+                  (((string-append "\\$\\{CMAKE_CURRENT_LIST_DIR\\}/\\.\\./"
+                                   "modules/asio-standalone/asio/include"))
+                   (dirname (search-input-file inputs "include/asio.hpp"))))
+                (substitute* (string-append source "AbletonLinkConfig.cmake")
+                  (("\\$\\{CMAKE_CURRENT_LIST_DIR\\}/include")
+                   "${CMAKE_CURRENT_LIST_DIR}/../../../include")
+                  (("\\$\\{CMAKE_CURRENT_LIST_DIR\\}/include/ableton/Link\\.hpp")
+                   "${CMAKE_CURRENT_LIST_DIR}/../../../include/ableton/Link.hpp")))))
+          (replace 'install
+            (lambda _
+              (let* ((out #$output)
+                     (lib-cmake (string-append out "/lib/cmake/ableton-link"))
+                     (source "../source"))
+                (for-each delete-file
+                          '("bin/LinkDiscoveryTest" "bin/LinkCoreTest"))
+                (copy-recursively "bin" (string-append out "/bin"))
+                (copy-recursively (string-append source "/include/ableton")
+                                  (string-append out "/include/ableton"))
+                (install-file (string-append source "/AbletonLinkConfig.cmake")
+                              lib-cmake)
+                (install-file (string-append source
+                                             "/cmake_include/AsioStandaloneConfig.cmake")
+                              (string-append lib-cmake "/cmake_include"))))))))
     (native-inputs
      (list catch-framework
-           python ;for running tests
-           portaudio)) ;for portaudio examples
+           portaudio                    ;for portaudio examples
+           python                       ;for running tests
+           python-setuptools))          ;for running tests
     (inputs
      (list jack-1)) ;for JACK examples
     (propagated-inputs
      ;; This is because include/ableton/platforms/asio/AsioWrapper.hpp
      ;; contains '#include <asio.hpp>'.
      (list asio-1.28))
-    (arguments
-     `(#:configure-flags
-       '("-DLINK_BUILD_QT_EXAMPLES=ON"
-         "-DLINK_BUILD_JACK=ON")
-       #:phases
-       (modify-phases %standard-phases
-         (replace 'check
-           (lambda* (#:key inputs tests? #:allow-other-keys)
-             (when tests?
-               (let* ((python (search-input-file inputs "/bin/python3"))
-                      (run-tests "../source/ci/run-tests.py"))
-                 (invoke python run-tests "--target" "LinkCoreTest")
-                 (invoke python run-tests "--target" "LinkDiscoveryTest")))))
-         (add-before 'install 'patch-cmake
-           (lambda* (#:key inputs #:allow-other-keys)
-             (let* ((source "../source/"))
-               (substitute* (string-append source
-                                           "cmake_include/AsioStandaloneConfig.cmake")
-                 (((string-append "\\$\\{CMAKE_CURRENT_LIST_DIR\\}/\\.\\./"
-                                  "modules/asio-standalone/asio/include"))
-                  (string-append (assoc-ref inputs "asio")
-                                 "/include")))
-               (substitute* (string-append source "AbletonLinkConfig.cmake")
-                 (("\\$\\{CMAKE_CURRENT_LIST_DIR\\}/include")
-                  "${CMAKE_CURRENT_LIST_DIR}/../../../include")
-                 (("\\$\\{CMAKE_CURRENT_LIST_DIR\\}/include/ableton/Link\\.hpp")
-                  "${CMAKE_CURRENT_LIST_DIR}/../../../include/ableton/Link.hpp")))))
-         (replace 'install
-           (lambda* (#:key outputs #:allow-other-keys)
-             (let* ((out (assoc-ref outputs "out"))
-                    (bin (string-append out "/bin"))
-                    (lib-cmake (string-append out "/lib/cmake/ableton-link"))
-                    (source "../source"))
-               (for-each (lambda (test-file)
-                           (delete-file test-file))
-                         '("bin/LinkDiscoveryTest" "bin/LinkCoreTest"))
-               (copy-recursively "bin" bin)
-               (copy-recursively (string-append source "/include/ableton")
-                                 (string-append out "/include/ableton"))
-               (install-file (string-append source "/AbletonLinkConfig.cmake")
-                             lib-cmake)
-               (install-file (string-append source
-                                            "/cmake_include/AsioStandaloneConfig.cmake")
-                             (string-append lib-cmake "/cmake_include"))))))))
     (home-page "https://github.com/Ableton/link")
     (synopsis "Synchronize musical beat, tempo, and phase across multiple applications")
     (description
@@ -7978,7 +8131,16 @@ Icecast server.")
            (lambda _
              (substitute* "misc.c"
                (("#include <stdio.h>\n" all)
-                (string-append all "#include <string.h>\n")))))
+                (string-append all "#include <string.h>\n")))
+             (substitute* "wavsubs.c"
+               (("#include \"wavsubs.h\"\n" all)
+                (string-append all "#include <stdlib.h>")))
+             (substitute* "wavfile.c"
+               (("#include \"wavsubs.h\"\n" all)
+                (string-append all "#include <stdlib.h>")))
+             (substitute* "generator.c"
+               (("#include \"wavsubs.h\"\n" all)
+                (string-append all "#include <stdlib.h>")))))
          (delete 'configure)
          (replace 'install
            (lambda* (#:key make-flags outputs #:allow-other-keys)
@@ -7990,7 +8152,8 @@ Icecast server.")
     (inputs
      (list ncurses))
     (native-inputs
-     `(("groff" ,groff-minimal)         ; for nroff
+     `(("gcc" ,gcc-9)
+       ("groff" ,groff-minimal)         ; for nroff
        ("util-linux" ,util-linux)))     ; for col
     (home-page "https://github.com/bleskodev/siggen")
     (synopsis "Signal generation tools")
@@ -8066,7 +8229,7 @@ as sample rate, determining whether an audio file is silent, and much more.")
     (propagated-inputs
      (list python-numba python-numpy python-scipy python-six))
     (native-inputs
-     (list python-pytest python-pytest-cov python-setuptools python-wheel))
+     (list python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/bmcfee/resampy")
     (synopsis "Efficient signal resampling")
     (description
@@ -8084,10 +8247,10 @@ Home Page}.")
      (origin
        (method git-fetch)
        (uri (git-reference
-             (url "https://github.com/librosa/librosa/")
-             (commit version)
-             ;; For test files.
-             (recursive? #true)))
+              (url "https://github.com/librosa/librosa/")
+              (commit version)
+              ;; TODO: Package test data.
+              (recursive? #true)))
        (file-name (git-file-name name version))
        (sha256
         (base32 "065x43hx670rjrclxi4hiqxscllb16v9s7myjvg7rd5pd3y0k7sg"))))
@@ -8095,15 +8258,13 @@ Home Page}.")
     (arguments
      (list
       #:test-flags
-      ;; Ignore --mpl flag.
-      '(list "-c" "/dev/null"
-             "-k" (string-append
-                   ;; Resampling tests require python-samplerate.
-                   "not resample"
-                   ;; These tests use Pooch and download data files.
-                   " and not example and not test_cite"
-                   ;; XXX assert 22050 == 31744
-                   " and not test_stream"))))
+      #~(list "-k" (string-append
+                    ;; Resampling tests require python-samplerate.
+                    "not resample"
+                    ;; These tests use Pooch and download data files.
+                    " and not example and not test_cite"
+                    ;; XXX assert 22050 == 31744
+                    " and not test_stream"))))
     (propagated-inputs
      (list python-audioread
            python-decorator
@@ -8122,10 +8283,9 @@ Home Page}.")
      (list python-matplotlib
            python-packaging
            python-pytest
-           python-pytest-cov
+           python-pytest-mpl
            python-resampy
-           python-setuptools
-           python-wheel))
+           python-setuptools))
     (home-page "https://librosa.org")
     (synopsis "Python module for audio and music processing")
     (description

gnu/packages/aux-files/linux-libre/6.12-riscv.conf

@@ -1989,7 +1989,7 @@ CONFIG_SCSI_LOWLEVEL=y
 # CONFIG_SCSI_DEBUG is not set
 # CONFIG_SCSI_PMCRAID is not set
 # CONFIG_SCSI_PM8001 is not set
-# CONFIG_SCSI_VIRTIO is not set
+CONFIG_SCSI_VIRTIO=m
 # CONFIG_SCSI_DH is not set
 # end of SCSI device support
 

gnu/packages/aux-files/python/pytest_guix.py

@@ -0,0 +1,58 @@
+# GNU Guix --- Functional package management for GNU
+# Copyright © 2025 Nicolas Graves <ngraves@ngraves.fr>
+#
+# This file is part of GNU Guix.
+#
+# GNU Guix is free software; you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 3 of the License, or (at
+# your option) any later version.
+#
+# GNU Guix is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
+
+import importlib.util
+import json
+
+
+def pytest_addoption(parser):
+    """Add stub options to be ignored by pytest.
+
+    More precisely, inject all options provided in .pytest_guix_options.json,
+    except options whose plugin is indeed installed.
+
+    For example, if the json file records --cov:
+      if the pytest_cov module is installed, its --cov will be used.
+      otherwise, --cov is ignored (read by this parser, but nothing is done
+      with it).
+
+    Flags can be given with additional keyword arguments in a json object.
+    If the json object is not given, fallback to the default
+    {"action": "append", "nargs": "?"}.  In practice, these arguments are only
+    mandatory for the store_true and store_const actions to avoid eating other
+    arguments.
+
+    This allows to remove development packages, which are not required at build
+    time while at the same time avoiding the need to adjust test options in
+    pyproject.toml or other configuration files.
+    """
+    with open(".pytest_guix_options.json", "r") as options_file:
+        plugin_options = json.load(options_file)
+        group = parser.getgroup(
+            "guix", "Options ignored by the Guix pyproject-build-system"
+        )
+
+        # Only add options for plugins that are not present.
+        for key, options in plugin_options.items():
+            if importlib.util.find_spec(f"pytest_{key}") is None:
+                # Plugin not found, add stub options
+                for option, kwargs in options.items():
+                    if kwargs:
+                        group.addoption(option, **kwargs)
+                    else:
+                        group.addoption(option, action="append", nargs="?")

gnu/packages/backup.scm

@@ -50,7 +50,6 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system go)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix download)
   #:use-module (guix gexp)
@@ -107,6 +106,7 @@
   #:use-module (gnu packages rsync)
   #:use-module (gnu packages ruby-xyz)
   #:use-module (gnu packages serialization)
+  #:use-module (gnu packages sphinx)
   #:use-module (gnu packages ssh)
   #:use-module (gnu packages time)
   #:use-module (gnu packages tls)
@@ -137,7 +137,6 @@
            python-paramiko
            python-pexpect
            python-pytest
-           python-pytest-runner
            python-setuptools-scm
            tzdata-for-tests
            python-mock))
@@ -632,41 +631,26 @@ rsnapshot uses hard links to deduplicate identical files.")
 (define-public borg
   (package
     (name "borg")
-    (version "1.4.3")
+    (version "1.4.4")
     (source
      (origin
-       (method url-fetch)
-       (uri (pypi-uri "borgbackup" version))
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/borgbackup/borg")
+              (commit version)))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "07s4jqcv03s98hi6lvqpvmnnhl532qnvv11mjy2xc08rbmsgmfvr"))
-       (snippet
-        #~(begin
-            ;; Delete files generated by Cython.  We used to have a regex that
-            ;; created the list of generated files but Borg has added new
-            ;; non-generated C files that cause the regex to generate the
-            ;; wrong list.
-            (for-each delete-file
-                      '("src/borg/algorithms/checksums.c"
-                        "src/borg/chunker.c"
-                        "src/borg/compress.c"
-                        "src/borg/crypto/low_level.c"
-                        "src/borg/hashindex.c"
-                        "src/borg/item.c"
-                        "src/borg/platform/darwin.c"
-                        "src/borg/platform/freebsd.c"
-                        "src/borg/platform/linux.c"
-                        "src/borg/platform/posix.c"
-                        "src/borg/platform/syncfilerange.c"
-                        "src/borg/platform/windows.c"))))))
+        (base32 "0bk302lbjjz1y8dg78wqqys80bm7mzkj5yf6wgyqdwvbqpsnpim4"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       #:modules '((srfi srfi-26)        ; for cut
                   (guix build utils)
                   (guix build pyproject-build-system))
+      ;; tests: 1318 passed, 293 skipped
       #:test-flags
       #~(list "--benchmark-skip"
-              "--numprocesses" (number->string (parallel-job-count))
+              "--numprocesses" (number->string (min 8 (parallel-job-count)))
               "--pyargs" "borg.testsuite"
               "-k" (string-join
                     ;; These tests need to write to '/var'.
@@ -687,7 +671,15 @@ rsnapshot uses hard links to deduplicate identical files.")
                           "test_mount_hardlinks "
                           "test_readonly_mount "
                           "test_fuse_versions_view "
-                          "test_migrate_lock_alive")
+                          "test_migrate_lock_alive"
+                          ;; Test files are not in /gnu/store
+                          "test_convert_all[False]"
+                          "test_convert_all[True]"
+                          "test_convert_segments[False]"
+                          "test_convert_segments[True]"
+                          "test_detect_attic_repo"
+                          "test_key_export_qr"
+                          "test_keys")
                     " and not "))
       #:phases
       #~(modify-phases %standard-phases
@@ -703,46 +695,58 @@ rsnapshot uses hard links to deduplicate identical files.")
                 (setenv "BORG_LIBLZ4_PREFIX" lz4)
                 (setenv "BORG_LIBXXHASH_PREFIX" xxhash)
                 (setenv "BORG_LIBZSTD_PREFIX" zstd))))
-          (add-after 'install 'install-doc
+          (add-before 'build 'fix-testsuite-setuid-mode
             (lambda _
-              (let ((man (string-append #$output "/share/man/man1"))
-                    (misc (string-append #$output "/share/doc/borg-"
-                                         #$(package-version this-package))))
+              (substitute* "src/borg/testsuite/archiver.py"
+                (("0o4755") "0o0755"))))
+          (add-after 'install 'build-and-install-docs
+            (lambda _
+              (let* ((doc (string-append #$output "/share/doc/borg-" #$version))
+                     (html (string-append doc "/html"))
+                     (txt (string-append doc "/txt"))
+                     (misc (string-append doc "/misc"))
+                     (man (string-append #$output "/share/man/man1")))
+                (with-directory-excursion "docs"
+                  (invoke "make" "text" "man" "singlehtml"))
                 (for-each (cut install-file <> misc)
                           '("docs/misc/create_chunker-params.txt"
                             "docs/misc/borg-data-flow.png"
                             "docs/misc/internals-picture.txt"
                             "docs/misc/prune-example.txt"))
-                (copy-recursively "docs/man" man))))
-          (add-after 'install-doc 'install-shell-completions
+                (copy-recursively "docs/_build/man" man)
+                (copy-recursively "docs/_build/singlehtml" html)
+                (copy-recursively "docs/_build/text" txt))))
+          (add-after 'build-and-install-docs 'install-shell-completions
             (lambda _
-              (let ((etc (string-append #$output "/etc"))
-                    (share (string-append #$output "/share")))
+              (let* ((etc (string-append #$output "/etc"))
+                     (share (string-append #$output "/share"))
+                     (bash (string-append etc "/bash_completion.d"))
+                     (zsh (string-append share "/zsh/site-functions"))
+                     (fish (string-append share "/fish/vendor_completions.d")))
                 (with-directory-excursion "scripts/shell_completions"
-                  (install-file "bash/borg"
-                                (string-append etc "/bash_completion.d"))
-                  (install-file "zsh/_borg"
-                                (string-append share "/zsh/site-functions"))
-                  (install-file "fish/borg.fish"
-                                (string-append share "/fish/vendor_completions.d")))))))))
+                  (install-file "bash/borg" bash)
+                  (install-file "zsh/_borg" zsh)
+                  (install-file "fish/borg.fish" fish))))))))
     (native-inputs
      (list python-cython
-           python-dateutil
+           python-guzzle-sphinx-theme
+           python-pkgconfig
            python-pytest
            python-pytest-benchmark
            python-pytest-xdist
            python-setuptools
            python-setuptools-scm
-           python-wheel))
+           python-sphinx
+           python-sphinxcontrib-jquery))
     (inputs
      (list acl
            lz4
            openssl
-           ;; This is the latest version of msgpack accepted by 'setup.py'.
-           python-msgpack-for-borg
+           python-msgpack
            ;; FUSE 3 isn't working well, so we stick with FUSE 2 for now:
            ;; <https://issues.guix.gnu.org/53407>
            python-llfuse
+           python-packaging
            xxhash
            `(,zstd "lib")))
     (synopsis "Deduplicated, encrypted, authenticated and compressed backups")
@@ -893,7 +897,7 @@ is like a time machine for your data.")
 (define-public restic
   (package
     (name "restic")
-    (version "0.17.3")
+    (version "0.18.1")
     (source
      (origin
        (method git-fetch)
@@ -902,7 +906,7 @@ is like a time machine for your data.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1wsgq7f0bfi0i5iiwcc3hlf2lhxcnz3zfs8p8bc6l913r9hvyg1x"))))
+        (base32 "0gxhknn022bwg2s8hababqg3vjkzflq59vr67y7r1c8fjnlsgf4l"))))
     (build-system go-build-system)
     (arguments
      (list
@@ -911,15 +915,18 @@ is like a time machine for your data.")
       #:import-path "github.com/restic/restic/cmd/restic"
       #:unpack-path "github.com/restic/restic"
       #:embed-files #~(list "children" "nodes" "text")
-      #:test-flags
-      ;; Python is required.
-      #~(list "-skip" "TestStdinFromCommand|TestStdinFromCommandNoOutput")
       #:test-subdirs #~(list "../../...")
       #:phases
       #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-python-path
+            (lambda* (#:key inputs unpack-path #:allow-other-keys)
+              (with-directory-excursion (string-append "src/" unpack-path)
+                (substitute* "cmd/restic/cmd_backup_integration_test.go"
+                  (("python")
+                   (search-input-file inputs "/bin/python3"))))))
           (add-after 'install 'install-docs
-            (lambda* (#:key import-path #:allow-other-keys)
-              (with-directory-excursion (string-append "src/" import-path)
+            (lambda* (#:key unpack-path #:allow-other-keys)
+              (with-directory-excursion (string-append "src/" unpack-path)
                 (let* ((man "/share/man")
                        (man-section (string-append man "/man")))
                   ;; Install all the man pages to "out".
@@ -942,12 +949,12 @@ is like a time machine for your data.")
            go-github-com-cenkalti-backoff-v4
            go-github-com-cespare-xxhash-v2
            go-github-com-elithrar-simple-scrypt
-           ;; go-github-com-go-ole-go-ole ;windows only
+           ;; go-github-com-go-ole-go-ole       ;Windows only
            go-github-com-google-go-cmp
            go-github-com-hashicorp-golang-lru-v2
            go-github-com-klauspost-compress
+           ;; go-github-com-microsoft-go-winio  ;Windows only
            go-github-com-minio-minio-go-v7
-           go-github-com-minio-sha256-simd
            go-github-com-ncw-swift-v2
            go-github-com-peterbourgon-unixtransport
            go-github-com-pkg-errors
@@ -967,6 +974,7 @@ is like a time machine for your data.")
            go-golang-org-x-text
            go-golang-org-x-time
            go-google-golang-org-api
+           python-minimal
 
            ;; XXX: These packages have to be bootstrapped to break cycle with
            ;; go-google-golang-org-grpc.
@@ -1260,10 +1268,9 @@ compression parameters used by Gzip.")
 (define-public borgmatic
   (package
     (name "borgmatic")
-    (version "2.1.2")
+    (version "2.1.5")
     (source
      (origin
-       ;; PyPI archive does not contain NEWS file needed for one test.
        (method git-fetch)
        (uri (git-reference
               (url "https://projects.torsion.org/borgmatic-collective/borgmatic")
@@ -1271,10 +1278,11 @@ compression parameters used by Gzip.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "0vrpl21n6hf3pj0di4n7s36jq64sx24c93j48cmbdgczs8jiwi36"))))
+         "17i15ysg0wbcnfvki8wz2z9gx3zx99czv3czjh83y2m1xppvqbl5"))))
     (build-system pyproject-build-system)
     (arguments
      (list
+      ;; tests: 2609 passed
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'configure
@@ -1289,19 +1297,12 @@ compression parameters used by Gzip.")
                 (("(module.get_local_path.+ == )'borg'" all start)
                  (string-append start "'"
                                 (search-input-file inputs "bin/borg")
-                                "'")))))
-          (add-before 'check 'set-path
-            (lambda _
-              ;; Tests require the installed executable.
-              (setenv "PATH"
-                      (string-append #$output "/bin" ":"
-                                     (getenv "PATH"))))))))
+                                "'"))))))))
     (native-inputs
      (list python-flexmock
            python-pytest
-           python-pytest-cov
-           python-setuptools
-           python-wheel))
+           python-pytest-timeout
+           python-setuptools))
     (inputs
      (list borg
            python-apprise
@@ -1363,9 +1364,9 @@ borgmatic is powered by borg.")
             (assoc-ref qt:%standard-phases 'qt-wrap)))))
     (native-inputs
      (list python-platformdirs
+           python-pytest
            python-pytest-mock
            python-pytest-qt
-           python-pytest-runner
            python-setuptools
            python-setuptools-git))
     (inputs

gnu/packages/benchmark.scm

@@ -13,7 +13,8 @@
 ;;; Copyright © 2021 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2022 Tomasz Jeneralczyk <tj@schwi.pl>
 ;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
-;;; Copyright © 2025 Artyom V. Poptsov <poptsov.artyom@gmail.com>
+;;; Copyright © 2025-2026 Artyom V. Poptsov <poptsov.artyom@gmail.com>
+;;; Copyright © 2026 Sughosha <sughosha@disroot.org>
 ;;; Copyright © 2023 Advanced Micro Devices, Inc.
 ;;;
 ;;; This file is part of GNU Guix.
@@ -41,8 +42,8 @@
   #:use-module (guix amd-gpu)
   #:use-module (guix search-paths)
   #:use-module (guix build-system cmake)
+  #:use-module (guix build-system qt)
   #:use-module (guix build-system gnu)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system meson)
   #:use-module (gnu packages)
@@ -678,20 +679,26 @@ the user is too low.  To raise such limit on a Guix System, refer to
          "0ifnw8vnkcgrksx7g5d9ii4kjppqnk32lvrybdybmibyvag6zfdc"))))
     (build-system gnu-build-system)
     (arguments
-     `(#:tests? #f                      ; no tests
-       #:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'fix-broken-makefile
-           (lambda _
-             ;; Remove erroneous "-lm" target
-             (substitute* "Makefile"
-               (("hackbench.o -lm") "hackbench.o"))))
-         (delete 'configure)
-         (replace 'install
-           (lambda* (#:key outputs #:allow-other-keys)
-             (let ((out (assoc-ref outputs "out")))
-               (install-file "interbench" (string-append out "/bin"))
-               (install-file "interbench.8" (string-append out "/share/man/man8"))))))))
+     (list #:tests? #f                      ; no tests
+           #:make-flags
+           #~(list "CFLAGS=-g -O2 -Wno-error=implicit-function-declaration"
+                   (string-append "CC=" #$(cc-for-target)))
+           #:phases
+           #~(modify-phases %standard-phases
+               (add-after 'unpack 'fix-broken-makefile
+                 (lambda _
+                   ;; Remove erroneous "-lm" target
+                   (substitute* "Makefile"
+                     (("hackbench.o -lm") "hackbench.o"))))
+               (delete 'configure)
+               (replace 'install
+                 (lambda _
+                   (install-file "interbench"
+                                 (string-append #$output "/bin"))
+                   (install-file "interbench.8"
+                                 (string-append #$output
+                                                "/share/man/man8")))))))
+    (native-inputs (list gcc-10))
     (home-page "http://users.on.net/~ckolivas/interbench/")
     (synopsis "Interactivity benchmark")
     (description "interbench is designed to benchmark interactivity on Linux.
@@ -730,7 +737,7 @@ and options.  With careful benchmarking, different hardware can be compared.")
 (define-public kdiskmark
   (package
     (name "kdiskmark")
-    (version "3.1.4")
+    (version "3.2.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -739,14 +746,13 @@ and options.  With careful benchmarking, different hardware can be compared.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1x8vd6swmf0i7f6m6wl2154n6plx8jkmcqfq6zxbdy255f1da74c"))))
-    (build-system cmake-build-system)
+                "161yyy4fcy5bnzhbcd7p90nlcslcsfp7n3m3bz9bygch7bdjw46g"))))
+    (build-system qt-build-system)
     (arguments
      (list
+      #:qtbase qtbase
       #:configure-flags
-      ;; Drop runtime dependency on KDE's KFAuth.
-      #~(list "-DPERFORM_PAGECACHE_CLEARING_USING_KF5AUTH=no"
-              (string-append "-DPOLKITQT-1_INSTALL_DIR=" #$output))
+      #~(list (string-append "-DPOLKITQT-1_INSTALL_DIR=" #$output))
       #:tests? #f                       ;no test suite
       #:phases
       #~(modify-phases %standard-phases
@@ -759,10 +765,10 @@ and options.  With careful benchmarking, different hardware can be compared.")
             (lambda _
               (rmdir "src/singleapplication")
               (symlink #$(package-source
-                          (this-package-input "single-application-qt5"))
+                          (this-package-input "single-application"))
                        "src/singleapplication"))))))
-    (native-inputs (list extra-cmake-modules qttools-5))
-    (inputs (list fio polkit-qt qtbase-5 single-application-qt5))
+    (native-inputs (list extra-cmake-modules qttools))
+    (inputs (list fio polkit-qt6 single-application qtwayland))
     (home-page "https://github.com/JonMagon/KDiskMark")
     (synopsis "Simple disk benchmark tool")
     (description "KDiskMark is an HDD and SSD benchmark tool.  KDiskMark

gnu/packages/bioinformatics.scm

@@ -65,7 +65,6 @@
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system r)
   #:use-module (guix build-system ruby)
@@ -913,7 +912,7 @@ suite native in R.")
 (define-public r-bpcells
   (package
     (name "r-bpcells")
-    (version "0.3.0")
+    (version "0.3.1")
     (source
      (origin
        (method git-fetch)
@@ -922,7 +921,7 @@ suite native in R.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "12h1di45fg06nhsliii7v0h1z567pkpis1xm4ar1qr8ns1n8iljw"))
+        (base32 "0yqgcajq83g25mznwcngaw7pi6vcqxqdnynpgb95yci57k3wrp6j"))
        (modules '((guix build utils)))
        (snippet
         '(delete-file-recursively "r/src/vendor/highway"))))
@@ -931,13 +930,15 @@ suite native in R.")
     (arguments
      (list
       #:phases
-      '(modify-phases %standard-phases
+      `(modify-phases %standard-phases
          (add-after 'unpack 'chdir
-           (lambda _
-             (substitute* "r/configure"
-               (("tools/hwy-test.cpp" m)
-                (string-append m " $HWY_LIBS $HWY_CFLAGS")))
-             (chdir "r"))))))
+           (lambda _ (chdir "r")))
+         ,@(if (target-x86-32?)
+               '((add-after 'chdir 'require-sse2
+                   ;; This avoids falling back to the scalar backend in
+                   ;; highway, which fails to build.
+                   (lambda _ (setenv "CFLAGS" "-msse2"))))
+               '()))))
     (propagated-inputs
      (list r-dplyr
            r-ggplot2
@@ -2288,10 +2289,10 @@ version = ~s
                   (delete-file-recursively
                    (string-append #$output "/.pytest_cache")))))))))
     (native-inputs (list python-pytest
-                         python-pytest-cov
                          python-pytest-datadir
                          python-pytest-doctestplus
                          python-recommonmark
+                         python-setuptools
                          python-sphinx))
     (inputs (cons python-wrapper (cargo-inputs 'python-bed-reader)))
     (propagated-inputs (list python-numpy python-pandas python-scipy))
@@ -3322,7 +3323,17 @@ trees, synthetic data generation, or just phylogenetic tree simulation.")
               (commit (assoc-ref properties 'commit))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1x0c1zhlfplhm4n07vibvh4jprjsdlypnlig87a8r07d26d4qphh"))))
+        (base32 "1x0c1zhlfplhm4n07vibvh4jprjsdlypnlig87a8r07d26d4qphh"))
+       (patches
+        (list
+         (origin
+           (method url-fetch)
+           (uri
+            (string-append "https://github.com/cancerit/parabam/commit/"
+                           "477246d7a13b227841bf49521181235c76afe75f.patch"))
+           (file-name (string-append name "-" version "-pull-16.patch"))
+           (sha256
+            (base32 "0znmyvrmwbscqymhsx60pnp9jhzpz94diyv409jygjm58hj5454z")))))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -3347,25 +3358,29 @@ defined rule on an input file.")
 (define-public python-pdbfixer
   (package
     (name "python-pdbfixer")
-    (version "1.9")
+    (version "1.12")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/openmm/pdbfixer")
-             (commit version)))
+             (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1zjhb19q5dclkwvzh8n29p31n1vzkhlmmzwqllimi89jsis1cx35"))))
+        (base32 "0jj724fkvk7bk47izk92ss8nz9ymfvj0f1fkypc0ig4xd5qzjqsz"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       #:test-flags
+      ;; These tests fail because they require internet access or test data.
       '(list "-k"
-             ;; These tests fail because they require internet access.
-             (string-append "not test_build_and_simulate.py"
-                            " and not test_cli.py"
-                            " and not test_mutate.py"))))
+             (string-join (list "not test_build_and_simulate"
+                                "test_charge_and_solvate"
+                                "test_cli"
+                                "test_leaving_atoms"
+                                "test_mutate"
+                                "test_nonstandard")
+                          " and not "))))
     (propagated-inputs (list openmm python-numpy))
     (native-inputs (list python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/openmm/pdbfixer")
@@ -3379,35 +3394,36 @@ encountered in PDB files prior to simulation tasks.")
 (define-public python-peaks2utr
   (package
     (name "python-peaks2utr")
-    (version "1.4.1")
-    (source (origin
-              (method url-fetch)
-              (uri (pypi-uri "peaks2utr" version))
-              (sha256
-               (base32
-                "104il0kk61q07b58g9xrss7xflwlbx4kzsmw9iih99lhfsii0wzg"))))
+    (version "1.5.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/haessar/peaks2utr")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1b4qiccp5j394pzqd1d4ss3k90zv3kdr84lykl6p8izn3k85b2bl"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-      #:test-flags
-      ;; These tests fail because file names are not URLs.
-      '(list "-k" (string-join
-                   (list "not test_forward_strand_annotations"
-                         "test_matching_chr"
-                         "test_reverse_strand_annotations")
-                   " and not "))
       #:phases
-      '(modify-phases %standard-phases
-         (add-after 'unpack 'relax-requirements
-           (lambda _
-             (substitute* "setup.cfg"
-               (("==") ">=")))))))
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'relax-requirements
+            (lambda _
+              (substitute* "setup.cfg"
+                (("==") ">=")
+                ;; See: <https://github.com/haessar/peaks2utr/issues/47>.
+                (("numpy >= 1.21.4, <= 1.26.4") "numpy >= 1.21.4")))))))
+    (native-inputs
+     (list python-pytest
+           python-setuptools))
     (propagated-inputs
      (list python-asgiref
            python-gffutils
            python-importlib-resources
-           macs
-           python-numpy-1
+           macs-3
+           python-numpy
            python-psutil
            python-pybedtools
            python-pysam
@@ -3415,7 +3431,6 @@ encountered in PDB files prior to simulation tasks.")
            python-tqdm
            python-typing-extensions
            python-zipp))
-    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/haessar/peaks2utr")
     (synopsis "Python CLI for annotating three prime UTR")
     (description
@@ -3864,7 +3879,6 @@ raw/ed14e050b2b75e7f4ddb73d512fbe928bbdb2b85")
            python-scipy))
     (native-inputs
      (list python-pytest
-           python-pytest-cov
            python-pytest-datadir
            python-pytest-doctestplus
            python-setuptools
@@ -4037,7 +4051,16 @@ counts.")
                      "test_scatter_rotate_mp4"
                      "test_sparse_svd"
                      "test_to_array_or_spmatrix_list_of_strings"
-                     "test_unzip_no_destination)")
+                     "test_unzip_no_destination"
+                     ;; AttributeError: module 'rpy2' has no attribute
+                     ;; '__version__'
+                     "test_verbose"
+                     "test_conversion_list"
+                     "test_conversion_dict"
+                     "test_conversion_array"
+                     "test_conversion_dataframe"
+                     "test_conversion_anndata_missing"
+                     "test_r_traceback)")
                "|")
               "test")
       #:phases
@@ -4290,7 +4313,6 @@ e.g. microbiome samples, genomes, metagenomes.")
     (native-inputs
      (list python-cython
            python-pytest
-           python-pytest-cov
            python-setuptools
            python-wheel))
     (propagated-inputs
@@ -6966,7 +6988,6 @@ and v1.1 to v1.2.")
      (list python-mypy-extensions
            python-pytest
            python-pytest-mock
-           python-pytest-runner
            python-setuptools
            python-wheel))
     (propagated-inputs
@@ -7649,78 +7670,6 @@ reads at a typical sensitivity of 90-99% relative to BLAST depending on the
 data and settings.")
     (license license:gpl3+)))
 
-(define-public discrover
-  (package
-    (name "discrover")
-    (version "1.6.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/maaskola/discrover")
-             (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32
-         "173fwi2vb6a5kp406hm3jj6j7v4whww796f2qcygp4rpvamh307y"))))
-    (build-system cmake-build-system)
-    (arguments
-     `(#:tests? #f                      ; there are no tests
-       #:phases
-       (modify-phases %standard-phases
-         (add-before 'build 'set-force-source-date
-           ;; for reproducible dates, texlive needs this to respect
-           ;; SOURCE_DATE_EPOCH
-           (lambda _
-             (setenv "FORCE_SOURCE_DATE" "1")))
-         (add-before 'build 'use-writable-texmfvar
-           ;; Use writable TEXMFVAR to generate fonts.
-           (lambda _
-             (setenv "TEXMFVAR" "/tmp")))
-         (add-after 'unpack 'fix-latex-errors
-           (lambda _
-             (with-fluids ((%default-port-encoding #f))
-               (substitute* "doc/references.bib"
-                 (("\\{S\\}illanp[^,]+,")
-                  "{S}illanp{\\\"a}{\\\"a},")))
-             ;; XXX: I just can't get pdflatex to not complain about these
-             ;; characters.  They end up in the manual via the generated
-             ;; discrover-cli-help.txt.
-             (substitute* "src/hmm/cli.cpp"
-               (("µ") "mu")
-               (("η") "eta")
-               (("≤") "<="))
-             ;; This seems to be a syntax error.
-             (substitute* "doc/discrover-manual.tex"
-               (("theverbbox\\[t\\]") "theverbbox"))))
-         (add-after 'unpack 'add-missing-includes
-           (lambda _
-             (substitute* "src/executioninformation.hpp"
-               (("#define EXECUTIONINFORMATION_HPP" line)
-                (string-append line "\n#include <random>")))
-             (substitute* "src/plasma/fasta.hpp"
-               (("#define FASTA_HPP" line)
-                (string-append line "\n#include <random>"))))))))
-    (inputs
-     (list boost cairo rmath-standalone))
-    (native-inputs
-     (list (texlive-local-tree
-            (list texlive-doi
-                  texlive-etoolbox
-                  texlive-examplep
-                  texlive-forloop
-                  texlive-listofitems
-                  texlive-natbib
-                  texlive-pgf           ;tikz
-                  texlive-readarray
-                  texlive-verbatimbox))
-           imagemagick))
-    (home-page "https://dorina.mdc-berlin.de/public/rajewsky/discrover/")
-    (synopsis "Discover discriminative nucleotide sequence motifs")
-    (description "Discrover is a motif discovery method to find binding sites
-of nucleic acid binding proteins.")
-    (license license:gpl3+)))
-
 (define-public eddylab-squid
   (package
     (name "eddylab-squid")
@@ -7956,7 +7905,7 @@ software to answer ad hoc questions.")
            r-tidyr
            r-upsetr
            r-yaml
-           snakemake-7))
+           snakemake))
     (native-inputs (list python-cython python-pyfakefs python-pytest))
     (home-page "https://github.com/dieterich-lab/Baltica")
     (synopsis "Integrated splice junction usage analysis")
@@ -8846,7 +8795,8 @@ high-throughput sequencing (HTS) assays")
          ;; Needed by tests
          (add-after 'unpack 'set-HOME
            (lambda _ (setenv "HOME" "/tmp"))))))
-    (propagated-inputs (list python-appdirs
+    (propagated-inputs (list mysql-connector-python
+                             python-appdirs
                              python-biopython
                              python-click
                              python-colorama
@@ -8854,7 +8804,6 @@ high-throughput sequencing (HTS) assays")
                              python-filelock
                              python-loguru
                              python-mygene
-                             python-mysql-connector-python
                              python-norns
                              python-numpy
                              python-pandas
@@ -9575,16 +9524,16 @@ data.  It also provides the @command{bgzip}, @command{htsfile}, and
 (define-public idr
   (package
     (name "idr")
-    (version "2.0.3")
+    (version "2.0.4.2")
     (source (origin
               (method git-fetch)
               (uri (git-reference
-                    (url "https://github.com/nboley/idr")
+                    (url "https://github.com/kundajelab/idr")
                     (commit version)))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "04j876h6z444v2q79drxx283d3k5snd72kj895wbalnl42206x9g"))
+                "01491ffhhj5plmpvvwmzp6c5arp5390h3jdpgsai92y6xbsgvxz8"))
               ;; Delete generated C code.
               (snippet
                '(begin (delete-file "idr/inv_cdf.c") #t))))
@@ -9592,11 +9541,21 @@ data.  It also provides the @command{bgzip}, @command{htsfile}, and
     ;; There is only one test ("test_inv_cdf.py") and it tests features that
     ;; are no longer part of this package.  It also asserts False, which
     ;; causes the tests to always fail.
-    (arguments `(#:tests? #f))
+    (arguments
+     (list
+      #:tests? #f
+      #:phases
+      '(modify-phases %standard-phases
+         (add-after 'unpack 'numpy-compatibility
+           (lambda _
+             (substitute* "idr/idr.py"
+               (("numpy.int") "int"))
+             (substitute* "idr/inv_cdf.pyx"
+               (("np.int_t") "np.int64_t")))))))
     (propagated-inputs
-     (list python-scipy python-sympy python-numpy-1 python-matplotlib))
+     (list python-scipy python-sympy python-numpy python-matplotlib))
     (native-inputs
-     (list python-cython-0
+     (list python-cython
            python-setuptools))
     (home-page "https://github.com/nboley/idr")
     (synopsis "Tool to measure the irreproducible discovery rate (IDR)")
@@ -9810,29 +9769,39 @@ sequencing tag position and orientation.")
 (define-public macs-3
   (package
     (name "macs")
-    (version "3.0.3")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/macs3-project/MACS")
-                    (commit (string-append "v" version))
-                    (recursive? #true)))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "08hi0a2a0md9gfg7jc75wxv69rggv2yqfd1hyrg4mi5bhi712m0v"))))
+    (version "3.0.4")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/macs3-project/MACS")
+              (commit (string-append "v" version))
+              (recursive? #true)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "16cv6bvvppi0z69r5l357ai8x4jg61rx8xrvcapk1wz6mh9naf5s"))))
     (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      ;; AssertionError: np.float32(1.0) != np.float64(-1.0)
+      ;; calculated step by step:
+      ;;  6.559423e-18
+      ;; expected:
+      ;;  -2.98155597e-18
+      #~(list (string-append "--deselect=test/test_SignalProcessing.py::"
+                             "Test_maxima::test_implement_smooth_here"))))
+    (native-inputs
+     (list python-cython
+           python-pytest
+           python-setuptools
+           zlib))
     (propagated-inputs
      (list python-cykhash
            python-hmmlearn
            python-numpy
            python-scikit-learn
            python-scipy))
-    (native-inputs
-     (list python-cython
-           python-pytest
-           python-setuptools
-           zlib))
     (home-page "https://github.com/macs3-project/MACS")
     (synopsis "Model based analysis for ChIP-Seq data")
     (description
@@ -12391,15 +12360,9 @@ Cuffdiff or Ballgown programs.")
               ;; This version file is expected to be created with git describe.
               (mkdir-p "taxtastic/data")
               (with-output-to-file "taxtastic/data/ver"
-                (lambda () (display #$version)))))
-          (replace 'check
-            ;; Note, this fails to run with "-v" as it tries to write to a
-            ;; closed output stream.
-            (lambda* (#:key tests? test-flags #:allow-other-keys)
-              (when tests?
-                (apply invoke "python" "-m" "unittest" test-flags)))))))
+                (lambda () (display #$version))))))))
     (native-inputs
-     (list python-setuptools python-wheel))
+     (list python-pytest python-setuptools))
     (propagated-inputs
      (list python-biopython
            python-decorator
@@ -14305,11 +14268,7 @@ quality control are provided.")
             (lambda _
               (substitute* "setup.cfg"
                 (("intervaltree~=3.0.2") "intervaltree")
-                (("termcolor~=1.1.0") "termcolor"))))
-          (add-after 'unpack 'fix-pytest-config
-            (lambda _
-              (substitute* "pyproject.toml"
-                ((" --cov=gdc_client --cov-report term") "")))))))
+                (("termcolor~=1.1.0") "termcolor")))))))
     (native-inputs
      (list python-flask
            python-httmock
@@ -14599,7 +14558,7 @@ data.  It also generates basic statistics for your sequences.")
 (define-public shorah
   (package
     (name "shorah")
-    (version "1.99.2")
+    (version "1.99.3")
     (source
      (origin
        (method url-fetch)
@@ -14608,7 +14567,7 @@ data.  It also generates basic statistics for your sequences.")
                            "/shorah-" version ".tar.xz"))
        (sha256
         (base32
-         "158dir9qcqspknlnyfr9zwk41x48nrh5wcg10k2grh9cidp9daiq"))))
+         "0zclbvdvbbfv3qpln3f47qa1yn77wf68z2b30vcxrzq3vsla4kgb"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases
@@ -14643,6 +14602,7 @@ data.  It also generates basic statistics for your sequences.")
            python
            python-biopython
            python-numpy
+           python-setuptools
            zlib))
     (native-inputs
      (list pkg-config))
@@ -16060,7 +16020,7 @@ dispersal.  Its output can be processed by treeannotator (from the
     (inputs
      (list boost-for-mysql
            cereal
-           cgal
+           cgal-5
            gsl
            hdf5
            fftw
@@ -17928,7 +17888,7 @@ expression report comparing samples in an easily configurable manner.")
 (define-public pigx-chipseq
   (package
     (name "pigx-chipseq")
-    (version "0.1.0")
+    (version "0.2.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/BIMSBbioinfo/pigx_chipseq/"
@@ -17936,7 +17896,7 @@ expression report comparing samples in an easily configurable manner.")
                                   "/pigx_chipseq-" version ".tar.gz"))
               (sha256
                (base32
-                "008n6drj9q5av86xihxlj4py2c9p3c5z5ld89c3bksrp77zxiy67"))))
+                "09m1bpjapfxwhzrnvfs2g2zv28k6af7yf7s5ji861nb9bwlkmyi7"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f ; parts of the tests rely on access to the network
@@ -17987,7 +17947,7 @@ expression report comparing samples in an easily configurable manner.")
            python-magic
            python-xlrd
            trim-galore
-           macs
+           macs-3
            multiqc
            perl
            pandoc
@@ -18112,6 +18072,8 @@ methylation and segmentation.")
              (setenv "NUMBA_CACHE_DIR" "/tmp")
              ;; Needed to capture environment
              (setenv "PYTHONPATH" (getenv "GUIX_PYTHONPATH")))))))
+    (native-inputs
+     (list python-setuptools))
     (inputs
      (list coreutils
            perl
@@ -19928,8 +19890,8 @@ set.")
     (name "instrain")
     ;; Git repository does not tag releases, use the latest commit from master
     ;; branch.
-    (properties '((commit . "6180be7b49a61b7e1ffe9f1489da5c6aa2ff9ac3")
-                  (revision . "0")))
+    (properties '((commit . "f172367e599851a6cb90048ae890d1bb6569063f")
+                  (revision . "1")))
     (version (git-version "1.10.0"
                           (assoc-ref properties 'revision)
                           (assoc-ref properties 'commit)))
@@ -19941,18 +19903,32 @@ set.")
               (commit (assoc-ref properties 'commit))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1njsxjf3248121yw3q1ig6asf6b3wa5fgjfyc6dkgk6nd4ih8wni"))))
+        (base32 "12rrkcckna7k095clir9100cz6i5dn77anih6aq1blbsg4yhprnr"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; Tests assume that test files exist (they don't) and are located in
-      ;; the developer's home directory, see:
-      ;; <https://github.com/MrOlm/inStrain/issues/218>.
-      #:tests? #false
+      ;; tests: 10 failed, 86 passed, 15 skipped, 220 warnings
+      #:test-flags
+      #~(list #$@(map (lambda (test)
+                        (string-append "--deselect=test/tests/" test))
+                      ;; Mixture of "FileNotFoundError" and "AssertionError"
+                      ;; errors.
+                      (list "test_genes.py::test_genes_0"
+                            "test_genes.py::test_genes_1"
+                            "test_genes.py::test_genes_2"
+                            "test_genes.py::test_genes_3"
+                            "test_parse_gene_annotations.py::test_PA_2"
+                            "test_polymorpher.py::test_polymorpher_unit_0"
+                            "test_polymorpher.py::test_polymorpher_unit_3"
+                            "test_quick_profile.py::test_quick_profile_0"
+                            "test_quick_profile.py::test_quick_profile_1"
+                            "test_quick_profile.py::test_quick_profile_2")))
       #:phases
       #~(modify-phases %standard-phases
          (add-after 'unpack 'patch-relative-imports
            (lambda _
+             ;; See: <https://github.com/MrOlm/inStrain/issues/218>.
+             (mkdir "test/test_backend/")
              (substitute* (find-files "test/tests" "test_.*\\.py")
                (("from test_utils import BTO")
                 "from .test_utils import BTO")
@@ -19965,9 +19941,10 @@ set.")
          (add-after 'unpack 'relax-requirements
            (lambda _
              (substitute* "setup.py"
+               (("biopython<=1.74") "biopython")
                ((".*pytest.*") "")))))))
     (propagated-inputs
-     (list python-biopython-1.73
+     (list python-biopython
            python-h5py
            python-lmfit
            python-matplotlib
@@ -19979,7 +19956,9 @@ set.")
            python-seaborn
            python-tqdm))
     (native-inputs
-     (list python-setuptools))
+     (list python-boto3
+           python-pytest
+           python-setuptools))
     (home-page "https://github.com/MrOlm/inStrain")
     (synopsis "Calculation of strain-level metrics")
     (description
@@ -20210,33 +20189,32 @@ fasta subsequences.")
 (define-public python-cooler
   (package
     (name "python-cooler")
-    (version "0.10.4")
+    ;; 0.10.4 (2025-07-21), the latest changes provide support for Python
+    ;; 3.12+; move back to git tag when released.
+    (properties '((commit . "6c2d65b1420a636193b7f05100a96410ea252147")
+                  (revision . "0")))
+    (version (git-version "0.10.4"
+                          (assoc-ref properties 'revision)
+                          (assoc-ref properties 'commit)))
     (source
      (origin
-       (method url-fetch)
-       (uri (pypi-uri "cooler" version))
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/open2c/cooler")
+              (commit (assoc-ref properties 'commit))))
+       (file-name (git-file-name name version))
        (sha256
-        (base32
-         "1fh5wjffbl5j8fdkc3c3lybscwvhv4v6r5jiyqgxvkkhb5nn498w"))))
+        (base32 "0xdb7lvyzj3wwv6jhkrxlj7gk830wkac4lwq5rjwk1r5qshjbn3n"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; tests: 141 passed, 4 skipped, 2 deselected, 268 warnings
+      ;; tests: 141 passed, 4 skipped, 2 deselected, 270 warnings
       #:test-flags
-      '(list "-k"
-             (string-append
-              ;; These tests download files from the internet.
-              "not test_fetch_chromsizes"
-              " and not test_roundtrip"
-              ;; This test depends on ipytree, which contains a lot of
-              ;; minified JavaScript.
-              " and not test_print_trees"))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'fix-pytest-config
-            (lambda _
-              (substitute* "pyproject.toml"
-                ((".*--cov.*") "")))))))
+      ;; This test depends on ipytree, which contains a lot of minified
+      ;; JavaScript.
+      #~(list "--deselect=tests/test_fileops.py::test_print_trees"
+              ;; Network access is required.
+              "--deselect=tests/test_create.py::test_roundtrip")))
     (native-inputs
      (list python-hatchling
            python-pytest))
@@ -20638,8 +20616,8 @@ and intra-cell population structure.\" Baron et al. Cell Systems (2016)
 (define-public porechop
   ;; The recommended way to install is to clone the git repository
   ;; https://github.com/rrwick/Porechop#installation
-  (let ((commit "289d5dca4a5fc327f97b3f8cecb68ecaf1014861")
-        (revision "1"))
+  (let ((commit "109e437280436d1ec27e5a5b7a34ffb752176390")
+        (revision "2"))
     (package
       (name "porechop")
       (version (git-version "0.2.3" revision commit))
@@ -20647,13 +20625,28 @@ and intra-cell population structure.\" Baron et al. Cell Systems (2016)
        (origin
          (method git-fetch)
          (uri (git-reference
-               (url "https://github.com/rrwick/Porechop")
-               (commit commit)))
+                (url "https://github.com/rrwick/Porechop")
+                (commit commit)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "05ps43gig0d3ia9x5lj84lb00hbsl6ba9n7y7jz927npxbr2ym23"))))
+          (base32 "0m7bsgvknv0cbkrpc0qi7b39jaws38dcdih4hi2ppg6z7byxip0k"))))
       (build-system pyproject-build-system)
-      (native-inputs (list python-setuptools python-wheel python-pytest))
+      (arguments
+       (list
+        #:test-flags
+        ;; Tests fail with errors: "SyntaxWarning: invalid escape sequence"
+        ;; and "AssertionError: Lists differ".
+        #~(list "-k" (string-join
+                      (list "not test_albacore_directory_all"
+                            "test_albacore_directory_unclassified"
+                            "test_verbosity_0_output"
+                            "test_albacore_directory_3"
+                            "test_verbosity_1_output"
+                            "test_verbosity_2_output")
+                      " and not "))))
+      (native-inputs
+       (list python-pytest
+             python-setuptools))
       (home-page "https://github.com/rrwick/porechop")
       (synopsis
        "Finding, trimming or splitting adapters, in Oxford Nanopore reads")
@@ -21938,6 +21931,10 @@ pycisTarget and SCENIC.")
       #:test-backend #~'unittest
       #:phases
       #~(modify-phases %standard-phases
+          (add-after 'unpack 'python-3.12-compatibility
+            (lambda _
+              (substitute* (find-files "tests" "\\.py")
+                (("assertEquals") "assertEqual"))))
           (add-after 'unpack 'disable-failing-tests
             (lambda _
               (substitute* "tests/test_algo.py"
@@ -23151,7 +23148,7 @@ genomes known to contain a given k-mer.")
     (inputs
      (list htslib python-wrapper zlib))
     (native-inputs
-     (list autoconf automake which))
+     (list autoconf automake python-setuptools which))
     (home-page "https://csb5.github.io/lofreq/")
     (synopsis "Sensitive variant calling from sequencing data")
     (description "LoFreq is a fast and sensitive variant-caller for inferring

gnu/packages/bittorrent.scm

@@ -86,7 +86,6 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix download)
   #:use-module (guix gexp)
@@ -361,18 +360,18 @@ Transmission BitTorrent daemon.")
     (name "aria2")
     (version "1.37.0")
     (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/aria2/aria2/releases/"
-                                  "download/release-" version
-                                  "/aria2-" version ".tar.xz"))
+              (method git-fetch)
+              (uri (git-reference
+                     (url "https://github.com/aria2/aria2")
+                     (commit (string-append "release-" version))))
               (sha256
                (base32
-                "0sxng4pynhj2qinranpv6wyzys3d42kz1gg2nrn63sw5f2nj1930"))
+                "1yr9yxr7z3bdg51afpzj0i63xl2rdk1prl20qws21y6r1x58vf65"))
+              (file-name (git-file-name name version))
               (patches (search-patches "aria2-unbundle-wslay.patch"))
               (snippet
                #~(begin (use-modules (guix build utils))
-                        (delete-file-recursively "deps")
-                        (delete-file "configure")))))
+                        (delete-file-recursively "deps")))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -382,10 +381,13 @@ Transmission BitTorrent daemon.")
                               #$output "/etc/bash_completion.d/"))
        #:phases
        #~(modify-phases %standard-phases
-           (add-after 'unpack 'patch-configure
+           (add-after 'unpack 'update-gettext-version
              (lambda _
                (substitute* "configure.ac"
-                 (("0[.]18") "0.19.6"))))
+                 (("AM_GNU_GETTEXT_VERSION\\(.*\\)")
+                  (format #f "AM_GNU_GETTEXT_VERSION([~a])"
+                          #$(package-version (this-package-native-input
+                                              "gettext-minimal")))))))
            (add-after 'unpack 'delete-socket-tests
              (lambda _
                (substitute* "test/LpdMessageDispatcherTest.cc"
@@ -417,8 +419,6 @@ Transmission BitTorrent daemon.")
       "Aria2 is a lightweight, multi-protocol & multi-source command-line
 download utility.  It supports HTTP/HTTPS, FTP, SFTP, BitTorrent and Metalink.
 Aria2 can be manipulated via built-in JSON-RPC and XML-RPC interfaces.")
-    (properties
-     '((release-monitoring-url . "https://github.com/aria2/aria2/releases")))
     (license license:gpl2+)))
 
 (define-public uget
@@ -533,8 +533,9 @@ and will take advantage of multiple processor cores where possible.")
     (inputs (list boost-1.83 openssl))
     (native-inputs
      (list libfaketime
-           python-wrapper
-           pkg-config))
+           pkg-config
+           python-setuptools
+           python-wrapper))
     (home-page "https://www.libtorrent.org/")
     (synopsis "Feature-complete BitTorrent implementation")
     (description

gnu/packages/books.scm

@@ -334,7 +334,7 @@ parallel study, and original language study.")
 (define-public book-emacs-lisp-elements
   (package
     (name "book-emacs-lisp-elements")
-    (version "2.0.1")
+    (version "2.0.4")
     (source
      (origin
        (method git-fetch)
@@ -343,7 +343,7 @@ parallel study, and original language study.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0774zycgx3zspn6f8pszap1751xgrlv2h3x66kksnj589nfnwzil"))))
+        (base32 "06mhrb16h93n3s3srcfgmzsyh2lxx4ffj1di6qvczfg4039pi3c8"))))
     (build-system emacs-build-system)
     (arguments
      (list

gnu/packages/boost.scm

@@ -83,9 +83,6 @@
     (build-system gnu-build-system)
     (arguments
      (list
-      #:imported-modules %pyproject-build-system-modules
-      #:modules `(((guix build pyproject-build-system) #:select (python-version))
-                  ,@%default-gnu-modules)
       #:tests? #f
       #:configure-flags
       #~(let ((icu (dirname (dirname (search-input-file
@@ -94,17 +91,26 @@
            ;; Auto-detection looks for ICU only in traditional
            ;; install locations.
            (string-append "--with-icu=" icu)
-           ;; Ditto for Python.
-           #$@(if (%current-target-system)
-                  #~()
-                  #~((let ((python (dirname (dirname (search-input-file
-                                                      %build-inputs
-                                                      "bin/python")))))
-                       (string-append "--with-python-root=" python)
-                       (string-append "--with-python=" python
-                                      "/bin/python")
-                       (string-append "--with-python-version="
-                                      (python-version python)))))
+           ;; Ditto for Python.  The Gexp can't be evaluated if python is not
+           ;; in the inputs (e.g. boost-for-mysql), so delay its evaluation
+           ;; after checking for python, rather than concurrently.
+           #$@(force
+               (if (or (%current-target-system)
+                       (not (this-package-input "python-minimal-wrapper")))
+                   (delay
+                     #~())
+                   (delay
+                     #~((let ((python (dirname (dirname (search-input-file
+                                                         %build-inputs
+                                                         "bin/python")))))
+                          (string-append "--with-python-root=" python)
+                          (string-append "--with-python=" python
+                                         "/bin/python")
+                          (string-append "--with-python-version="
+                                         #$(version-major+minor
+                                            (package-version
+                                             (this-package-input
+                                              "python-minimal-wrapper")))))))))
            "--with-toolset=gcc"))
       #:make-flags
       #~(list "threading=multi" "link=shared"
@@ -200,29 +206,39 @@
           (replace 'install
             (lambda* (#:key make-flags #:allow-other-keys)
               (apply invoke "./b2" "install" make-flags)))
-          #$@(if (%current-target-system)
-                 #~()
-                 #~((add-after 'install 'provide-libboost_python
-                      (lambda* (#:key make-flags inputs outputs #:allow-other-keys)
-                        (let* ((static? (member "link=static" make-flags))
-                               (libext (if static? ".a" ".so"))
-                               (python (dirname (dirname (search-input-file
-                                                          inputs "bin/python"))))
-                               (python-version (python-version python))
-                               (libboost_pythonNN
-                                (string-append "libboost_python"
-                                               (string-join (string-split
-                                                             python-version #\.)
-                                                            "")
-                                               libext)))
-                          (with-directory-excursion (string-append #$output "/lib")
-                            (symlink libboost_pythonNN
-                                     (string-append "libboost_python" libext))
-                            ;; Some packages only look for the major version.
-                            (symlink libboost_pythonNN
-                                     (string-append "libboost_python"
-                                                    (string-take python-version 1)
-                                                    libext)))))))))))
+          #$@(force  ; See above for why the force is necessary.
+              (if (or (%current-target-system)
+                      (not (this-package-input "python-minimal-wrapper")))
+                  (delay
+                    #~())
+                  (delay
+                    #~((add-after 'install 'provide-libboost_python
+                         (lambda* (#:key make-flags inputs outputs
+                                   #:allow-other-keys)
+                           (let* ((static? (member "link=static" make-flags))
+                                  (ext (if static? ".a" ".so"))
+                                  (python (dirname
+                                           (dirname (search-input-file
+                                                     inputs "bin/python"))))
+                                  (python-version
+                                   #$(version-major+minor
+                                      (package-version
+                                       (this-package-input
+                                        "python-minimal-wrapper"))))
+                                  (NN (string-join (string-split
+                                                    python-version #\.)
+                                                   ""))
+                                  (libboost_pythonNN
+                                   (string-append "libboost_python" NN ext))
+                                  (major (string-take python-version 1)))
+                             (with-directory-excursion
+                                 (string-append #$output "/lib")
+                               (symlink libboost_pythonNN
+                                        (string-append "libboost_python" ext))
+                               ;; Some packages only look for the major version.
+                               (symlink libboost_pythonNN
+                                        (string-append "libboost_python"
+                                                       major ext)))))))))))))
     (inputs
      (append
       (list icu4c zlib)

gnu/packages/bootloaders.scm

@@ -48,6 +48,7 @@
   #:use-module (gnu packages base)
   #:use-module (gnu packages disk)
   #:use-module (gnu packages bison)
+  #:use-module (gnu packages build-tools)
   #:use-module (gnu packages cdrom)
   #:use-module (gnu packages check)
   #:use-module (gnu packages compression)
@@ -65,7 +66,6 @@
   #:use-module (gnu packages man)
   #:use-module (gnu packages mtools)
   #:use-module (gnu packages ncurses)
-  #:use-module (gnu packages ninja)
   #:use-module (gnu packages package-management)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages pkg-config)
@@ -267,8 +267,8 @@
              ;; rebooting.
              (if (member (or (%current-target-system)
                              (%current-system))
-                           (package-supported-systems fuse-2))
-                 (list fuse-2)
+                           (package-supported-systems fuse))
+                 (list fuse)
                  '())))
     (native-inputs
      (append (list pkg-config
@@ -1815,63 +1815,68 @@ For more information, refer to
 (define-public os-prober
   (package
     (name "os-prober")
-    (version "1.81")
+    (version "1.84")
     (source
      (origin
-       (method url-fetch)
-       (uri (string-append "mirror://debian/pool/main/o/os-prober/os-prober_"
-                           version ".tar.xz"))
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://salsa.debian.org/installer-team/os-prober.git")
+              (commit version)))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "10w8jz6mqhp0skdcam9mpgv79vx1sv7lkpra3rqjg0jkhvn2in9g"))))
+        (base32 "1bji3w6nbqaz8zqrbmy8b1j5dph9xn7bdh1cd2z8ia1q125i6mgp"))))
     (build-system gnu-build-system)
     (arguments
-     `(#:modules ((guix build gnu-build-system)
+     (list
+      #:tests? #f                       ; No tests.
+      #:modules '((guix build gnu-build-system)
                   (guix build utils)
-                  (ice-9 regex)         ; for string-match
-                  (srfi srfi-26))       ; for cut
-       #:make-flags
-       (list ,(string-append "CC=" (cc-for-target)))
-       #:tests? #f                      ; no tests
-       #:phases
-       (modify-phases %standard-phases
-         (replace 'configure
-           (lambda* (#:key outputs #:allow-other-keys)
-             (substitute* (find-files ".")
-               (("/usr") (assoc-ref outputs "out")))
-             (substitute* (find-files "." "50mounted-tests$")
-               (("mkdir") "mkdir -p"))))
-         (replace 'install
-           (lambda* (#:key outputs #:allow-other-keys)
-             (define (find-files-non-recursive directory)
-               (find-files directory
-                           (lambda (file stat)
-                             (string-match (string-append "^" directory "/[^/]*$")
-                                           file))
-                           #:directories? #t))
+                  (ice-9 regex)         ; string-match
+                  (srfi srfi-26))       ; cut
+      #:make-flags
+      #~(list (string-append "CC=" #$(cc-for-target)))
+      #:phases
+      #~(modify-phases %standard-phases
+          (replace 'configure
+            (lambda _
+              (substitute* (find-files ".")
+                (("/usr") #$output))
+              (substitute* (find-files "." "50mounted-tests$")
+                (("mkdir") "mkdir -p -v"))))
+          (replace 'install
+            (lambda _
+              (define (find-files-non-recursive directory)
+                (find-files directory
+                            (lambda (file stat)
+                              (string-match (string-append "^" directory "/[^/]*$")
+                                            file))
+                            #:directories? #t))
 
-             (let* ((out (assoc-ref outputs "out"))
-                    (bin (string-append out "/bin"))
-                    (lib (string-append out "/lib"))
-                    (share (string-append out "/share")))
-               (for-each (cut install-file <> bin)
-                         (list "linux-boot-prober" "os-prober"))
-               (install-file "newns" (string-append lib "/os-prober"))
-               (install-file "common.sh" (string-append share "/os-prober"))
-               (install-file "os-probes/mounted/powerpc/20macosx"
-                             (string-append lib "/os-probes/mounted"))
-               (for-each
-                (lambda (directory)
-                  (for-each
-                   (lambda (file)
-                     (let ((destination (string-append lib "/" directory
-                                                       "/" (basename file))))
-                       (mkdir-p (dirname destination))
-                       (copy-recursively file destination)))
-                   (append (find-files-non-recursive (string-append directory "/common"))
-                           (find-files-non-recursive (string-append directory "/x86")))))
-                (list "os-probes" "os-probes/mounted" "os-probes/init"
-                      "linux-boot-probes" "linux-boot-probes/mounted"))))))))
-    (home-page "https://joeyh.name/code/os-prober")
+              (let ((bin (string-append #$output "/bin"))
+                     (lib (string-append #$output "/lib"))
+                     (share (string-append #$output "/share")))
+                (for-each (cut install-file <> bin)
+                          (list "linux-boot-prober" "os-prober"))
+                (install-file "newns" (string-append lib "/os-prober"))
+                (install-file "common.sh" (string-append share "/os-prober"))
+                (install-file "os-probes/mounted/powerpc/20macosx"
+                              (string-append lib "/os-probes/mounted"))
+                (for-each
+                 (lambda (directory)
+                   (for-each
+                    (lambda (file)
+                      (let ((destination (string-append lib "/" directory
+                                                        "/" (basename file))))
+                        (mkdir-p (dirname destination))
+                        (copy-recursively file destination)))
+                    (append (find-files-non-recursive (string-append directory "/common"))
+                            (find-files-non-recursive (string-append directory "/x86")))))
+                 (list "linux-boot-probes"
+                       "linux-boot-probes/mounted"
+                       "os-probes"
+                       "os-probes/init"
+                       "os-probes/mounted"))))))))
+    (home-page "https://joeyh.name/code/os-prober/")
     (synopsis "Detect other operating systems")
     (description "os-prober probes disks on the system for other operating
 systems so that they can be added to the bootloader.  It also works out how to

gnu/packages/browser-extensions.scm

@@ -69,6 +69,55 @@ match website theme.")
 (define-public adaptive-tab-bar-colour/icecat
   (make-icecat-extension adaptive-tab-bar-colour))
 
+(define canvasblocker
+  (package
+    (name "canvasblocker")
+    (version "1.12")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/kkapsner/CanvasBlocker")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0xxs6s7nrl4y4qiw2cpkqh170mbv78n0ixd874a72jjvczw2vpg7"))
+       (modules '((guix build utils) (ice-9 match) (ice-9 ftw)))
+       (snippet
+        #~(begin
+            (for-each delete-file
+                      '("canvasblocker.xpi" "package-lock.json"))
+            ;; Delete all hidden files/directories except .tools.
+            (for-each
+             (match-lambda
+               ((or "." ".tools" ".."
+                    (? (lambda (name)
+                         (not (string-prefix? "." name)))))
+                #t)
+               ((? file-is-directory? dir)
+                (delete-file-recursively dir))
+               (file
+                (delete-file file)))
+             (scandir "."))))))
+    (build-system copy-build-system)
+    (properties '((addon-id . "CanvasBlocker@kkapsner.de")))
+    (arguments
+     (list
+      #:install-plan  ;deduced from .tools/build.js
+      #~'(("." #$(assq-ref properties 'addon-id)
+           #:exclude ("crowdin.yml" "package.json" "releaseNotes.txt")
+           #:exclude-regexp ("test/.*" "versions/.*" ".tools/*")))))
+    (home-page "https://github.com/kkapsner/CanvasBlocker")
+    (synopsis "Firefox extension to protect from being fingerprinted")
+    (description "This extension allows users to prevent websites from using
+some Javascript APIs to fingerprint them.  Users can choose to block the APIs
+entirely on some or all websites (which may break some websites) or just block
+or fake its fingerprinting-friendly readout API.")
+    (license license:mpl2.0)))
+
+(define-public canvasblocker/icecat
+  (make-icecat-extension canvasblocker))
+
 (define play-to-kodi
   (package
     (name "play-to-kodi")
@@ -263,7 +312,7 @@ fill and submit login forms if a matching password entry is found.")
 (define keepassxc-browser
   (package
     (name "keepassxc-browser")
-    (version "1.9.9.6")
+    (version "1.9.10")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -273,7 +322,7 @@ fill and submit login forms if a matching password entry is found.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1chw1y1332zn69s7kf5mkljc1bp2xfvl3zzvafnalv3zj2jsa5cs"))
+                "18kgmdvsq1kv9px8a1m7i10r4m0iik72qlnw9k2ijxmn1xikfyfb"))
 	      ;;  Default 'manifest.json' targets chromium based browsers and
 	      ;;  depends on background.service_worker support.
 	      ;;  See: <https://bugzilla.mozilla.org/show_bug.cgi?id=1573659>
@@ -328,15 +377,15 @@ with the @uref{https://keepassxc.org, KeePassXC} password manager.")
 (define noscript
   (package
     (name "noscript")
-    (version "13.2.2")
+    (version "13.6.19.1984")
     (source (origin
               (method url-fetch/zipbomb)
               (uri (string-append
-                    "https://noscript.net/download/releases/noscript-" version
-                    ".xpi"))
+                    "https://archive.torproject.org/tor-package-archive/torbrowser/noscript/noscript-"
+                    version ".xpi"))
               (sha256
                (base32
-                "0w2w0a76dk01bkh83mqwgs9ky02rjqk15z5sxg4a6mw0hpr81bpm"))))
+                "1lb3855w34avs7idvycv8cfpjnpic2mnsh9yqkidrdw7msr0na74"))))
     (build-system copy-build-system)
     (properties '((addon-id . "{73a6fe31-595d-460b-a920-fcc0f8843232}")))
     (arguments

gnu/packages/build-tools.scm

@@ -64,7 +64,6 @@
   #:use-module (gnu packages logging)
   #:use-module (gnu packages lua)
   #:use-module (gnu packages man)
-  #:use-module (gnu packages ninja)
   #:use-module (gnu packages package-management)
   #:use-module (gnu packages pcre)
   #:use-module (gnu packages perl)
@@ -77,6 +76,7 @@
   #:use-module (gnu packages python-crypto)
   #:use-module (gnu packages python-web)
   #:use-module (gnu packages python-xyz)
+  #:use-module (gnu packages re2c)
   #:use-module (gnu packages regex)
   #:use-module (gnu packages rpc)
   #:use-module (gnu packages serialization)
@@ -94,7 +94,6 @@
   #:use-module (guix build-system hare)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system trivial)
   #:use-module (guix deprecation)
   #:use-module (guix download)
@@ -105,7 +104,8 @@
   #:use-module (guix packages)
   #:use-module (guix search-paths)
   #:use-module (guix utils)
-  #:use-module (ice-9 optargs))
+  #:use-module (ice-9 optargs)
+  #:use-module (srfi srfi-1))
 
 (define-public acr
   (package
@@ -275,14 +275,14 @@ generate such a compilation database.")
 (define-public bmake
   (package
     (name "bmake")
-    (version "20260406")
+    (version "20260508")
     (source
      (origin
        (method url-fetch)
        (uri (string-append
              "http://www.crufty.net/ftp/pub/sjg/bmake-" version ".tar.gz"))
        (sha256
-        (base32 "09nzd9v12n2pwxmf67056kzjnvxcpk5q2x1fs5qkrsk1ssh5yvpd"))
+        (base32 "0b58j7l53jbqaxcfggimdbylf71hbyfm44m6s4646ry7mf8fl7kv"))
        (patches (search-patches "bmake-run-check-separately.patch"))))
     (build-system gnu-build-system)
     (inputs
@@ -432,9 +432,8 @@ files and generates build instructions for the Ninja build system.")
     (arguments
      (list
       #:tests? #f                       ;disabled to avoid extra dependencies
-      ;; Essentially a lighter copy of the former python-build-system.
-      ;; Using it rather than pyproject-build-system allows to edit the latter
-      ;; without a C++ world rebuild.
+      ;; Custom build steps to prevent using pyproject-build-system which
+      ;; allows to edit the latter without a C++ world rebuild.
       #:phases
       #~(modify-phases %standard-phases
           (delete 'bootstrap)
@@ -1452,3 +1451,147 @@ It is an alternative to e.g. @command{make(1)} and @command{redo(1)}.  Features:
 @end itemize
 ")
     (license license:wtfpl2)))
+
+(define-public xmake
+  (package
+   (name "xmake")
+   (version "3.0.8")
+   (source (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/xmake-io/xmake.git")
+             (commit (string-append "v" version))
+             ;; Requires some dependencies from "xmake-core-*" repos
+             (recursive? #t)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1pdjz52w9lzfbcpx9wmzy0bsjg7i19xz43f63czk7jz9v0xba6gi"))))
+   (build-system gnu-build-system)
+   (arguments
+    (list
+     ;; No check rule in make
+     ;; TODO: find how to run Lua tests in "test" directory
+     #:tests? #f))
+   (home-page "https://xmake.io/")
+   (synopsis "Cross-platform build utility based on Lua")
+   (description "@command{xmake} is a cross-platform build utility based on Lua.
+Features:
+@itemize
+@item Built-in caching and parallel compilation,
+@item Concise Lua syntax,
+@item Custom rules, plugins and modules,
+@item Support for C++20 modules and compile_commands.json,
+@item Support for languages outside C/C++ (e.g. Go, Rust, Zig).
+@end itemize")
+   (license license:asl2.0)))
+
+(define-public ninja/pinned
+  (hidden-package
+   (package
+     (name "ninja")
+     (version "1.13.2")
+     (source (origin
+               (method git-fetch)
+               (uri (git-reference
+                     (url "https://github.com/ninja-build/ninja")
+                     (commit (string-append "v" version))))
+               (file-name (git-file-name name version))
+               (sha256
+                (base32
+                 "0lp9dmxbjyjwv089i8mgq3nvnhpbnsn01ifm05m9s47w7cifrl8g"))))
+     (build-system gnu-build-system)
+     (inputs (list python-wrapper re2c))
+     (arguments
+      '(; Tests now require googletest, which is a circular dependency.
+        #:tests? #f
+        #:phases
+        (modify-phases %standard-phases
+          (replace 'configure
+            (lambda _
+              (substitute* "src/subprocess-posix.cc"
+                (("/bin/sh") (which "sh")))
+              (substitute* "src/subprocess_test.cc"
+                (("/bin/echo") (which "echo")))))
+          (replace 'build
+            (lambda _
+              (invoke "./configure.py" "--bootstrap")))
+          (replace 'check
+            (lambda* (#:key tests? #:allow-other-keys)
+              (when tests?
+                (invoke "./configure.py")
+                (invoke "./ninja" "ninja_test")
+                (invoke "./ninja_test"))))
+          (replace 'install
+            (lambda* (#:key outputs #:allow-other-keys)
+              (let* ((out (assoc-ref outputs "out"))
+                     (bin (string-append out "/bin"))
+                     (doc (string-append out "/share/doc/ninja")))
+                (install-file "ninja" bin)
+                (install-file "doc/manual.asciidoc" doc)))))))
+     (home-page "https://ninja-build.org/")
+     (synopsis "Small build system")
+     (description
+      "Ninja is a small build system with a focus on speed.  It differs from
+other build systems in two major respects: it is designed to have its input
+files generated by a higher-level build system, and it is designed to run
+builds as fast as possible.")
+    (license license:asl2.0))))
+
+(define-public ninja
+  (package/inherit ninja/pinned
+    (properties (alist-delete 'hidden? (package-properties ninja/pinned)))))
+
+(define-public samurai
+  (package
+    (name "samurai")
+    (version "1.2")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/michaelforney/samurai")
+                    (commit version)))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "04iw18hgkm72yrl83a2xh1jc47w9rilpb95kwick0j37b4q3gxj4"))))
+    (build-system gnu-build-system)
+    (arguments
+     (list #:tests? #f                  ;no test suite
+           #:make-flags #~(list (string-append "CC=" #$(cc-for-target))
+                                (string-append "PREFIX=" #$output))
+           #:phases #~(modify-phases %standard-phases
+                        (add-after 'unpack 'patch-/bin/sh
+                          (lambda* (#:key inputs #:allow-other-keys)
+                            (substitute* "build.c"
+                              (("/bin/sh")
+                               (search-input-file inputs "bin/sh")))))
+                        (delete 'configure))))
+    (inputs (list bash-minimal))
+    (home-page "https://github.com/michaelforney/samurai")
+    (synopsis "Ninja-compatible build tool written in C")
+    (description "@code{samurai} is a ninja-compatible build tool written in
+C99 with a focus on simplicity, speed, and portability.  It is
+feature-complete and supports most of the same options as ninja.  This package
+provides the command @command{samu}.  For a @command{ninja} command
+replacement, use the @code{samu-as-ninja-wrapper} package.")
+    (license (list license:asl2.0               ;for the most part
+                   license:expat))))            ;htab.h, htab.c and tree.c
+
+(define-public samu-as-ninja-wrapper
+  (package/inherit samurai
+    (name "samu-as-ninja-wrapper")
+    (build-system trivial-build-system)
+    (arguments
+     (list #:builder
+           (with-imported-modules '((guix build utils))
+             #~(begin
+                 (use-modules (guix build utils))
+                 (let ((bindir (string-append #$output "/bin"))
+                       (samu (string-append #$(this-package-input "samurai")
+                                            "/bin/samu")))
+                   (mkdir-p bindir)
+                   (symlink samu (string-append bindir "/ninja")))))))
+    (inputs (list samurai))
+    (description "This package provides the @command{ninja} command,
+implemented as a symbolic link to the @command{samu} command of @code{samurai}
+package.")))

gnu/packages/c.scm

@@ -47,6 +47,7 @@
   #:use-module (guix gexp)
   #:use-module (guix utils)
   #:use-module (guix packages)
+  #:use-module (guix deprecation)
   #:use-module (guix download)
   #:use-module (guix git-download)
   #:use-module (guix build-system cmake)
@@ -54,7 +55,6 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix store)
   #:use-module (gnu packages)
   #:use-module (gnu packages bash)
@@ -62,6 +62,7 @@
   #:use-module (gnu packages bootstrap)
   #:use-module (gnu packages bison)
   #:use-module (gnu packages check)
+  #:use-module (gnu packages compiler-tools)
   #:use-module (gnu packages flex)
   #:use-module (gnu packages gawk)
   #:use-module (gnu packages gcc)
@@ -81,6 +82,7 @@
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages gettext)
   #:use-module (gnu packages pkg-config)
+  #:use-module (gnu packages sqlite)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages web)
   #:use-module (gnu packages xml))
@@ -1093,32 +1095,8 @@ portability.")
     (license (list license:bsd-2        ;all files except...
                    license:bsd-3))))    ;...the unidef.1 manual page
 
-(define-public byacc
-  (package
-    (name "byacc")
-    (version "20240109")
-    (source (origin
-             (method url-fetch)
-             (uri (string-append
-                   "https://invisible-mirror.net/archives/byacc/byacc-"
-                   version ".tgz"))
-             (sha256
-              (base32
-               "0il4w1vwbglayakywyghiqhcjpg1yvv5ww2p8ylz32bi05wpg2gj"))
-             (snippet
-              #~(begin (delete-file "btyaccpar.c")
-                       (delete-file "yaccpar.c")))))
-    (native-inputs
-     (list gawk))
-    (build-system gnu-build-system)
-    (home-page "https://invisible-island.net/byacc/byacc.html")
-    (synopsis "Berkeley Yacc LALR parser generator")
-    (description
-     "Berkeley Yacc is an LALR(1) parser generator.  Yacc reads the grammar
-specification from a file and generates an LALR(1) parser for it.  The parsers
-consist of a set of LALR(1) parsing tables and a driver routine written in the
-C programming language.")
-    (license license:public-domain)))
+(define-deprecated/public-alias byacc
+  (@ (gnu packages compiler-tools) byacc))
 
 (define-public argparse
   (package
@@ -1327,25 +1305,6 @@ for the @acronym{AWS,Amazon Web Services} SDK.")
     (home-page "https://github.com/awslabs/aws-c-sdkutils")
     (license license:asl2.0)))
 
-(define-public pcl
-  (package
-    (name "pcl")
-    (version "1.12")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append
-              "http://www.xmailserver.org/pcl-" version ".tar.gz"))
-       (sha256
-        (base32
-         "06ly65rq4iyj2p4704i215c8y4rgspwl8sxfaifmf4ahfr30bcz7"))))
-    (build-system gnu-build-system)
-    (home-page "http://www.xmailserver.org/libpcl.html")
-    (synopsis "Portable Coroutine Library")
-    (description "The @acronym{PCL, Portable Coroutine Library} implements the
-low level functionality for coroutines.")
-    (license license:gpl2+)))
-
 (define-public aws-c-http
   (package
     (name "aws-c-http")
@@ -1519,6 +1478,48 @@ Telemetry Transport (MQTT) publish-subscribe messaging protocol.")
     (home-page "https://microsoft.github.io/mimalloc/")
     (license license:expat)))
 
+(define-public mps
+  (package
+    (name "mps")
+    (version "1.118.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/Ravenbrook/mps")
+             (commit (string-append "release-" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "078iv3fsz0dnfwb7g63apkvcksczbqfxrxm73k80jwnwca6pgafy"))))
+    (build-system gnu-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'patch-cflags
+            ;; The recursive make call in the test suite doesn't pass CFLAGS
+            ;; down properly so we need to do it ourselves
+            (lambda _
+              (substitute* "Makefile.in"
+                (("CFLAGS=\"(.*)\"" _ flags)
+                 (string-append "CFLAGS=\"" flags " $(CFLAGS)\""))))))
+      #:parallel-build? #f ;Parallel build fails
+      #:test-target "test"
+      #:make-flags
+      #~(list "CFLAGS=-Wno-error=dangling-pointer -Wno-maybe-uninitialized"
+              ;; These flags are needed for the recursive make calls in testing
+              (string-append "CC=" #$(cc-for-target)) "-j" "1")))
+    (inputs (list sqlite))
+    (home-page "http://www.ravenbrook.com/project/mps")
+    (synopsis "Memory pool system")
+    (description
+     "This package provides a cross-platform memory management system.  It
+permits the flexible combination of memory management techniques, supporting
+manual and automatic memory management, in-line allocation, finalization,
+weakness, and multiple concurrent co-operating incremental generational
+garbage collections.  It also includes a library of memory pool classes
+implementing specialized memory management policies.")
+    (license license:bsd-2)))
 ;;; The package is named orangeduck-mpc to differentiate it from GNU mpc.
 (define-public orangeduck-mpc
   ;; The last release lacks an 'install' target.

gnu/packages/calendar.scm

@@ -45,7 +45,6 @@
   #:use-module (guix build-system go)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system pyproject)
-  #:use-module ((guix build-system python) #:select (pypi-uri))
   #:use-module (gnu packages admin)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)

gnu/packages/cdrom.scm

@@ -337,7 +337,7 @@ reconstruction capability.")
 (define-public cdrdao
   (package
     (name "cdrdao")
-    (version "1.2.5")
+    (version "1.2.6")
     (source
      (origin
        (method git-fetch)
@@ -347,30 +347,18 @@ reconstruction capability.")
               (string-append "rel_" (string-replace-substring version "." "_")))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1hh1lm4wr1vhsq2brczn94h88h3bppvjidj9cfqkl20jhaj38968"))))
-    (build-system gnu-build-system)
+        (base32 "0hb8dfb88zk01yk5nfl8m5hsg4x2scb2899pxb717zywznr8jijw"))))
+    (build-system glib-or-gtk-build-system)
     (arguments
-     '(#:configure-flags
-       (list
-        ;; GCDMaster depends on obsolete libgnomeuimm, see
-        ;; <https://github.com/cdrdao/cdrdao/issues/3>.
-        "--without-gcdmaster"
-        ;; Use the native SCSI interface.
-        "--without-scglib")
-       #:phases
-       (modify-phases %standard-phases
-         (add-before 'bootstrap 'fix-configure.ac
-           (lambda _
-             ;; Remove references to missing macros.
-             (substitute* "configure.ac"
-              (("^AM_GCONF_SOURCE_2.*") "")
-              ;; This was introduced in autoconf-2.70, but is described
-              ;; as usually not needed in the autoconf documentation.
-              (("^AC_CHECK_INCLUDES_DEFAULT") "")))))))
+     (list
+      #:configure-flags
+      #~(list
+         ;; Use the native SCSI interface.
+         "--without-scglib")))
     (native-inputs
-     (list autoconf automake pkg-config))
+     (list autoconf-2.72 automake `(,glib "bin") pkg-config))
     (inputs
-     (list ao lame libmad libvorbis))
+     (list ao gtkmm-3 lame libmad libsigc++-2 libvorbis))
     (home-page "https://cdrdao.sourceforge.net")
     (synopsis "Read and write CDs in disk-at-once mode")
     (description "cdrdao records audio or data CDs in disk-at-once (DAO) mode,

gnu/packages/check.scm

@@ -131,7 +131,6 @@
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system trivial)
   #:use-module (ice-9 match)
   #:use-module (srfi srfi-1))
@@ -1882,7 +1881,6 @@ http server.")
     (arguments (list #:tests? #false)) ;no tests included
     (native-inputs
      (list python-pytest
-           python-pytest-cov
            python-setuptools
            python-wheel
            python-xmlschema))
@@ -1915,42 +1913,6 @@ XML output")
 decorators from external files.")
     (license license:expat)))
 
-(define-public python-pytest-random-order
-  (package
-    (name "python-pytest-random-order")
-    (version "1.1.1")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (pypi-uri "pytest-random-order" version))
-       (sha256
-        (base32 "104hww3b86jchk41kjhyycr541pd2dfgqkww6lx5y70z9z9xfwj4"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:test-flags
-      ;; AttributeError: module 'py' has no attribute 'code'.
-      #~(list "-k" (string-append "not test_it_works_with_actual_tests"
-                                  " and not test_failed_first"
-                                  " and not test_doctests"))))
-    (native-inputs
-     (list python-pytest-xdist
-           python-setuptools
-           python-py
-           python-wheel))
-    (propagated-inputs
-     (list python-pytest))
-    (home-page "https://github.com/jbasko/pytest-random-order")
-    (synopsis "Pytest plugin to randomize the order of tests")
-    (description "@code{pytest-random-order} is a Pytest plugin that
-randomizes the order of tests.  This can be useful to detect a test that
-passes just because it happens to run after an unrelated test that leaves the
-system in a favourable state.  The plugin allows user to control the level of
-randomness they want to introduce and to disable reordering on subsets of
-tests.  Tests can be rerun in a specific order by passing a seed value
-reported in a previous test run.")
-    (license license:expat)))
-
 (define-public python-pytest-runner
   (package
     (name "python-pytest-runner")
@@ -2733,7 +2695,11 @@ failures and errors instantly.")
                      "test_is_not_identity"
                      "test_resolves_builtin_types[object]"
                      "test_resolves_forwardrefs_to_builtin_types[object]"
-                     "test_timezone_lookup[tzinfo]")
+                     "test_timezone_lookup[tzinfo]"
+                     ;; hypothesis.errors.FailedHealthCheck: Input generation is slow
+                     #$@(if (target-riscv64?)
+                            '("test_can_run_with_no_db")
+                            '()))
                " and not "))
       #:phases
       #~(modify-phases %standard-phases
@@ -2956,12 +2922,8 @@ mypy plugins.")
                            "and not upstream_url"))))
     (native-inputs
      (list python-pytest
-           python-pytest-black
            python-pytest-checkdocs
-           python-pytest-cov
            python-pytest-enabler
-           python-pytest-flake8
-           python-pytest-mypy
            python-setuptools
            python-wheel))
     (propagated-inputs
@@ -3068,21 +3030,28 @@ possible to write plugins to add your own checks.")
 (define-public behave
   (package
     (name "behave")
-    (version "1.3.3")
+    ;; 1.3.3 (2025-09-04), the latest changes provide support for Python
+    ;; 3.12+; move back to git tag when released.
+    (properties '((commit . "43d0a93240c0b25b0cbf59bdc196b74fb8a2353e")
+                  (revision . "0")))
+    (version (git-version "1.3.3"
+                          (assoc-ref properties 'revision)
+                          (assoc-ref properties 'commit)))
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
               (url "https://github.com/behave/behave")
-              (commit (string-append "v" version))))
+              (commit (assoc-ref properties 'commit))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1fxj51kailsdakqi7qbw700k258n7r3lv75mgxs45ld5xh2jfyxh"))))
+        (base32 "05671jf7scpgqr8chzgs9bxidvf12nlkqqiqxa5qwmykqfvc8nk4"))))
     (build-system pyproject-build-system)
+    ;; tests: 1638 passed, 3 skipped, 2 xfailed
     (native-inputs
-     (list python-assertpy
-           python-chardet
-           python-mock
+     (list python-chardet
+           python-freezegun
+           python-charset-normalizer
            python-path
            python-pyhamcrest
            python-pytest

gnu/packages/chemistry.scm

@@ -28,7 +28,6 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix download)
   #:use-module (guix gexp)
   #:use-module (guix git-download)

gnu/packages/chromium.scm

@@ -53,7 +53,6 @@
   #:use-module (gnu packages llvm)
   #:use-module (gnu packages kerberos)
   #:use-module (gnu packages maths)
-  #:use-module (gnu packages ninja)
   #:use-module (gnu packages node)
   #:use-module (gnu packages nss)
   #:use-module (gnu packages pciutils)
@@ -79,12 +78,9 @@
   '("base/third_party/cityhash" ;Expat
     "base/third_party/double_conversion" ;BSD-3
     "base/third_party/icu" ;Unicode, X11-style
-    "base/third_party/nspr" ;MPL-2.0
     "base/third_party/superfasthash" ;BSD-3
     "base/third_party/symbolize" ;BSD-3
     "base/third_party/xdg_user_dirs" ;Expat
-    "buildtools/third_party/libc++" ;BSD
-    "buildtools/third_party/libc++abi" ;BSD
     "net/third_party/mozilla_security_manager" ;MPL-1.1/GPL2+/LGPL2.1+
     "net/third_party/quiche" ;BSD-3
     "net/third_party/uri_template" ;ASL2.0
@@ -222,7 +218,6 @@
     "third_party/libaom/source/libaom/third_party/fastfeat" ;BSD-3
     "third_party/libaom/source/libaom/third_party/vector" ;Expat
     "third_party/libaom/source/libaom/third_party/x86inc" ;ISC
-    "third_party/libc++" ;Expat
     "third_party/libdrm" ; Expat
     "third_party/libgav1" ;ASL2.0
     "third_party/libjingle_xmpp" ;BSD-3
@@ -248,8 +243,6 @@
     "third_party/libzip" ;BSD-3
     "third_party/lit" ;BSD-3
     "third_party/lit/v3_0" ;BSD-3
-    "third_party/llvm-libc" ;ASL2.0
-    "third_party/llvm-libc/src/shared" ;ASL2.0
     "third_party/lottie" ;Expat
     "third_party/lss" ;BSD-3
     "third_party/lzma_sdk" ;public domain
@@ -400,7 +393,7 @@
   ;; run the Blink performance tests, just remove everything to save ~70MiB.
   '("third_party/blink/perf_tests"))
 
-(define %chromium-version "147.0.7727.55")
+(define %chromium-version "147.0.7727.137")
 (define %ungoogled-revision (string-append %chromium-version "-1"))
 (define %debian-revision (string-append "debian/" %ungoogled-revision))
 
@@ -412,7 +405,7 @@
     (file-name (git-file-name "ungoogled-chromium" %ungoogled-revision))
     (sha256
      (base32
-      "0l6v4wf16067igawjlh90f3d287mkw0cq4j5lvrxxy17y1skynzc"))))
+      "1ha84j3zckdv2l8dpicqhmr6a8mq3bqwalw0bmgamvlmns9i7nrj"))))
 
 (define %debian-origin
   (origin
@@ -425,7 +418,7 @@
                                 ((_ version) version))))
     (sha256
      (base32
-      "0gqarll08i7rcs1amapciv263xvzglc8p44ikavq3xd12yyvcd98"))))
+      "04lqbclkvn9nsksgjpjilh78a8y17mwwq4pmhr6h8gvpp2y3bhhc"))))
 
 (define (origin-file origin file)
   (computed-file
@@ -570,7 +563,7 @@
                                   %chromium-version "-lite.tar.xz"))
               (sha256
                (base32
-                "1salvlw5sykx3zmsbp7cgmf7y8yy6jlgb4b4zswzsbjrprk4jnap"))
+                "1m22whg5n9lw9gqhalm95jwfm45lqp4a7cs3mn3f4n8w0rvr0r5j"))
               (modules '((guix build utils)))
               (snippet (force ungoogled-chromium-snippet))))
     (build-system gnu-build-system)
@@ -596,6 +589,7 @@
               "use_custom_libcxx=false" ; support for this is deprecated and to be removed.
               "optimize_webui=false"
               "webnn_use_tflite=false"
+              "build_tflite_with_xnnpack=false"
               "safe_browsing_use_unrar=false"
               "chrome_pgo_phase=0"
               "use_sysroot=false"
@@ -688,7 +682,7 @@
               "use_gnome_keyring=false" ;deprecated by libsecret
               "use_pulseaudio=true"
               "link_pulseaudio=true"
-              "icu_use_data_file=false"
+              "icu_use_data_file=true"
 
               ;; VA-API acceleration is currently only supported on x86_64-linux.
               #$@(if (string-prefix? "x86_64" (or (%current-target-system)
@@ -696,6 +690,13 @@
                      '("use_vaapi=true")
                      '())
 
+              #$@(if (string-prefix? "aarch64" (or (%current-target-system)
+                                                   (%current-system)))
+                     '("use_v4l2_codec=true"
+                       "use_vaapi=false"
+                       "use_av1_hw_decoder=true")
+                     '())
+
               ;; Do not artificially restrict formats supported by system ffmpeg.
               "proprietary_codecs=true"
               "ffmpeg_branding=\"Chrome\""
@@ -769,12 +770,7 @@
                    (string-append libclang "clang_base_path"))
                   (("(_rustfmt_path = \")\\$\\{rust_bindgen_root\\}" _ rustfmt)
                    (string-append rustfmt "${rust_sysroot_absolute}"))))))
-          (add-after 'patch-stuff 'include-pthreadpool
-            ;; FIXME: Somehow the build system cannot locate this header.
-            (lambda _
-              (copy-file "third_party/pthreadpool/src/include/pthreadpool.h"
-                         "pthreadpool.h")))
-          (add-after 'include-pthreadpool 'add-absolute-references
+          (add-after 'patch-stuff 'add-absolute-references
             (lambda* (#:key inputs #:allow-other-keys)
               (let ((cups-config (search-input-file inputs "/bin/cups-config"))
                     (libnssckbi.so (search-input-file inputs
@@ -892,13 +888,15 @@
                                        "resources.pak"
                                        "v8_context_snapshot.bin"
                                        "chrome_crashpad_handler"
+                                       "icudtl.dat"
 
                                        ;; Swiftshader ICD.
                                        "libvk_swiftshader.so"
                                        "vk_swiftshader_icd.json"
 
-                                       ;; Chromium ships its own libGL
-                                       ;; implementation called ANGLE.
+                                       ;; Chromium ships its own libGL and
+                                       ;; vulkan implementation called ANGLE.
+                                       "libvulkan.so.1"
                                        "libEGL.so" "libGLESv2.so"))
                      (locales        (string-append lib "/locales"))
                      (resources      (string-append lib "/resources"))
@@ -914,9 +912,11 @@
 
                 (substitute* '("chrome/app/resources/manpage.1.in"
                                "chrome/installer/linux/common/desktop.template")
-                  (("@@MENUNAME@@") "Chromium")
-                  (("@@PACKAGE@@") "chromium")
-                  (("/usr/bin/@@USR_BIN_SYMLINK_NAME@@") exe))
+                  (("@@MENUNAME") "Chromium")
+                  (("@@PACKAGE") "chromium")
+                  (("/usr/bin/@@usr_bin_symlink_name") exe)
+                  (("@@uri_scheme") "x-scheme-handler/chromium;")
+                  (("@@extra_desktop_entries") ""))
 
                 (mkdir-p man)
                 (copy-file "chrome/app/resources/manpage.1.in"

gnu/packages/cinnamon.scm

@@ -30,7 +30,6 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (gnu packages)
   #:use-module (gnu packages admin)
   #:use-module (gnu packages autotools)

gnu/packages/clojure.scm

@@ -377,14 +377,14 @@ designs.")
 (define-public clojure-tools
   (package
     (name "clojure-tools")
-    (version "1.12.4.1582")
+    (version "1.12.4.1618")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://download.clojure.org/install/clojure-tools-"
                            version
                            ".tar.gz"))
-       (sha256 (base32 "08gzfblnz0zhnk6pwr9vcm6y168psgrwmqww3wqk1v7j5gr68n7x"))
+       (sha256 (base32 "08fy3k248sbsrbgl0lq3q4d23vp4chdawy230ardx61sssk9sxhk"))
        ;; Remove AOT compiled JAR.  The other JAR only contains uncompiled
        ;; Clojure source code.
        (snippet
@@ -512,7 +512,7 @@ defining and using monads and useful monadic functions.")
 (define-public clojure-core-async
   (package
     (name "clojure-core-async")
-    (version "1.8.741")
+    (version "1.9.865")
     (home-page "https://github.com/clojure/core.async")
     (source (origin
               (method git-fetch)
@@ -522,7 +522,7 @@ defining and using monads and useful monadic functions.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1m6lir2xr119yxz483cz0rfw4k3a40qmmsiwl2y7kyxy65vab60z"))))
+                "15pc2m58fscix85gsiwl9dlvw2x6alvc4qni46rry2sr00nfzd3r"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure")
@@ -546,7 +546,7 @@ work on Communicating Sequential Processes (CSP).")
 (define-public clojure-core-cache
   (package
     (name "clojure-core-cache")
-    (version "1.2.249")
+    (version "1.2.263")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -555,7 +555,7 @@ work on Communicating Sequential Processes (CSP).")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0hdwv5dsx49i12riz3frzshwkgw26ah43667lzga2n6zgpmrh8ii"))))
+                "19q81aki8wb120v6jfylwqgf965mwkhrpcsrs5zazjfjv8vq6glx"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure")
@@ -598,7 +598,7 @@ It supports Clojure 1.5.1 and later as well as ClojureScript.")
 (define-public clojure-core-memoize
   (package
     (name "clojure-core-memoize")
-    (version "1.2.273")
+    (version "1.2.281")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -607,7 +607,7 @@ It supports Clojure 1.5.1 and later as well as ClojureScript.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "009fj19y464an66pryygmqbnx2dqk5wkp40rbkbgkir0ax0k6j3y"))))
+                "0bnlqs7m69svhfadwy46wgc88j9ma9fhdk4586b4xxppamj6c5j4"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure")
@@ -734,7 +734,7 @@ maps also support conj/peek/pop operations.")
 (define-public clojure-data-xml
   (package
     (name "clojure-data-xml")
-    (version "0.2.0-alpha10")
+    (version "0.2.0-alpha11")
     (home-page "https://github.com/clojure/data.xml")
     (source (origin
               (method git-fetch)
@@ -744,7 +744,7 @@ maps also support conj/peek/pop operations.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0mnhgrh20p2wwmq8a4631dkpxbgbijwi6sfhw5v784hzkjkfgkh6"))))
+                "0k7hq3s4zbk0ryhgycivl1dk22fzh60522a57az8ykmixhqjxwhg"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure")
@@ -862,7 +862,7 @@ tree.
 (define-public clojure-tools-analyzer
   (package
     (name "clojure-tools-analyzer")
-    (version "1.2.1")
+    (version "1.2.2")
     (home-page "https://github.com/clojure/tools.analyzer")
     (source (origin
               (method git-fetch)
@@ -872,7 +872,7 @@ tree.
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0apa3gc45rmdj19plbvglpj6i9dadkgvvidj5mcnkzi9y3h0nr27"))))
+                "07cxphrmd6a3clnalrdqxlyin8l0lw0xhjy2rh9gaizxfv5c23jp"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure")
@@ -938,7 +938,7 @@ tools.analyzer, providing additional JVM-specific passes.")
 (define-public clojure-tools-cli
   (package
     (name "clojure-tools-cli")
-    (version "1.3.250")
+    (version "1.4.256")
     (home-page "https://github.com/clojure/tools.cli")
     (source (origin
               (method git-fetch)
@@ -947,7 +947,7 @@ tools.analyzer, providing additional JVM-specific passes.")
                     (commit (string-append "v" version))))
               (file-name (git-file-name name version))
               (sha256
-               (base32 "1nyw33w83gd7xlbpma03p4jwcdcp38h8y99x2rqw4zcnw19gsz4p"))))
+               (base32 "1kr1cpypzgzh8pkih5qamsaq8c96jfpcvmn9f330sic2shb53m55"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure/")
@@ -959,29 +959,25 @@ tools.analyzer, providing additional JVM-specific passes.")
 work with command-line arguments.")
     (license license:epl1.0)))
 
-(define-public clojure-tools-deps
+(define-public clojure-tools-deps-edn
   (package
-    (name "clojure-tools-deps")
-    (version "0.28.1578")
-    (home-page "https://github.com/clojure/tools.deps")
+    (name "clojure-tools-deps-edn")
+    (version "0.9.22")
+    (home-page "https://github.com/clojure/tools.deps.edn")
     (source (origin
               (method git-fetch)
               (uri (git-reference
-                    (url home-page)
-                    (commit (string-append "v" version))))
+                     (url home-page)
+                     (commit (string-append "v" version))))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1w3f8cl81q4kln6iz74fnfzms4c4x279ivh1962pcg22q8l1w8d5"))))
+                "082p6zpbb8vvdc9ncc0d66h3g7sax4pp0h4fymwiv0lakzyq3g9g"))))
     (build-system clojure-build-system)
     (arguments
      `(#:source-dirs '("src/main/clojure" "src/main/resources")
-       #:java-source-dirs '("src/main/java")
        #:test-dirs '("src/test/clojure")
        #:doc-dirs '()
-       ;; FIXME: Could not initialize class
-       ;; org.eclipse.aether.transport.http.SslSocketFactory
-       #:tests? #f
        #:phases
        (modify-phases %standard-phases
          (add-before 'build 'reference-clojure-jar-input
@@ -992,12 +988,42 @@ work with command-line arguments.")
                 (string-append "org.clojure/clojure {:local/root \""
                                (assoc-ref inputs "clojure")
                                "/share/java/clojure.jar\"}"))))))))
+    (synopsis "Reader for @file{deps.edn}")
+    (description "This package provides support for reading and manipulating
+@file{deps.edn} files and data structures.  It can be used in scenarios where
+the @code{tools.deps} library is not needed for dep expansion.")
+    (license license:epl1.0)))
+
+(define-public clojure-tools-deps
+  (package
+    (name "clojure-tools-deps")
+    (version "0.29.1598")
+    (home-page "https://github.com/clojure/tools.deps")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url home-page)
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1qds0ri6y8s7419x3pzl9yhhr19qli3l52yg9a78w47h0w6dd1kv"))))
+    (build-system clojure-build-system)
+    (arguments
+     `(#:source-dirs '("src/main/clojure" "src/main/resources")
+       #:java-source-dirs '("src/main/java")
+       #:test-dirs '("src/test/clojure")
+       #:doc-dirs '()
+       ;; FIXME: Could not initialize class
+       ;; org.eclipse.aether.transport.http.SslSocketFactory
+       #:tests? #f))
     (propagated-inputs (list maven-3.8-core
                              maven-resolver-1.6-connector-basic
                              maven-resolver-1.6-transport-http
                              maven-resolver-1.6-transport-file
                              clojure-tools-gitlibs
                              clojure-tools-cli
+                             clojure-tools-deps-edn
                              clojure-data-xml
                              cognitect-aws-api))
     (synopsis "Clojure library supporting clojure-tools")
@@ -1175,7 +1201,7 @@ asynchronous support.")
 (define-public cognitect-aws-api
   (package
     (name "cognitect-aws-api")
-    (version "0.8.800")
+    (version "0.8.824")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1184,7 +1210,7 @@ asynchronous support.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "17sxj3mvq4iasr0kchbx2anmrh25v8bvmpam4si704vksmnm28p3"))
+                "0ivlcmsr7rvr7741k9wzniv2zxijida0b588nqngm5vrgna816yl"))
               (modules '((guix build utils)))
               (snippet
                '(begin

gnu/packages/cmake.scm

@@ -47,7 +47,6 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system emacs)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module ((guix search-paths) #:select ($SSL_CERT_DIR $SSL_CERT_FILE))
   #:use-module (gnu packages)
   #:use-module (gnu packages backup)

gnu/packages/code.scm

@@ -1,8 +1,8 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2013, 2015, 2018, 2020, 2021, 2023 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2012-2013, 2015, 2018, 2020, 2021, 2023, 2025 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2013, 2015 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2015, 2018 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2016, 2017, 2019-2024 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2017, 2018, 2019-2024 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2017, 2018 Clément Lassieur <clement@lassieur.org>
 ;;; Copyright © 2017 Andy Wingo <wingo@igalia.com>
@@ -49,7 +49,6 @@
   #:use-module (guix git-download)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system cmake)
-  #:use-module ((guix build-system python) #:select (pypi-uri))
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system trivial)
   #:use-module (guix build-system go)
@@ -866,6 +865,46 @@ Objective@tie{}C, D, Java, Pawn, and Vala).  Features:
 the C, C++, C++/CLI, Objective‑C, C#, and Java programming languages.")
     (license license:lgpl3+)))
 
+(define-public idutils
+  (package
+    (name "idutils")
+    (version "4.6")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "mirror://gnu/idutils/idutils-" version ".tar.xz"))
+       (sha256
+        (base32 "1hmai3422iaqnp34kkzxdnywl7n7pvlxp11vrw66ybxn9wxg90c1"))
+       (modules '((guix build utils)))
+       (snippet
+        '(begin
+           (substitute* (find-files "lib" "\\.c$")
+             (("#if defined _IO_ftrylockfile")
+              "#if defined _IO_EOF_SEEN"))
+           (substitute* "lib/stdio-impl.h"
+             (("^/\\* BSD stdio derived implementations")
+              (string-append
+               "#if !defined _IO_IN_BACKUP && defined _IO_EOF_SEEN" "\n"
+               "# define _IO_IN_BACKUP 0x100\n" "#endif\n\n"
+               "/* BSD stdio derived implementations")))
+
+           ;; 'gets' is deprecated in glibc 2.33 and its declaration is
+           ;; no longer visible by default from <stdio.h>.
+           (substitute* "lib/stdio.in.h"
+             (("_GL_WARN_ON_USE \\(gets.*")
+              ""))))))
+    (build-system gnu-build-system)
+    (native-inputs (list emacs-minimal))
+    (home-page "https://www.gnu.org/software/idutils/")
+    (synopsis "Identifier database utilities")
+    (description
+     "The GNU idutils package includes tools to create an index of textual
+tokens used in a list of file names and then to query that index.  Thus, it
+allows the user to, for example, find all the uses of a particular function
+in a large programming project.  In addition to handling textual tokens, it
+can also handle numeric constants and the contents of character strings.")
+    (license license:gpl3+)))
+
 (define-public indent
   ;; XXX: Not released anymore, but some patches fix CVEs.
   (let ((commit "1737c929cbe2ec8a181107df9742894a44c57f71")

gnu/packages/codex.scm

@@ -18,10 +18,10 @@
 
 ;;; This module is separate from (gnu packages rust-apps) to avoid a
 ;;; circular module dependency: (gnu packages rust-sources), which
-;;; defines rust-codex-0.120.0, transitively loads (gnu packages
+;;; defines rust-codex-0.124.0, transitively loads (gnu packages
 ;;; rust-apps) through its #:use-module chain.  If the codex package
 ;;; lived in rust-apps.scm, loading rust-sources would trigger loading
-;;; rust-apps before rust-codex-0.120.0 is defined, causing an unbound
+;;; rust-apps before rust-codex-0.124.0 is defined, causing an unbound
 ;;; variable error.
 
 (define-module (gnu packages codex)
@@ -54,14 +54,14 @@
 (define-public codex
   (package
     (name "codex")
-    (version (package-version rust-codex-0.120.0))
+    (version (package-version rust-codex-0.124.0))
     (source
      (origin
-       (inherit (package-source rust-codex-0.120.0))
+       (inherit (package-source rust-codex-0.124.0))
        (patches (search-patches
                  "codex-acp-0.11.1-disable-code-mode.patch"
-                 "rust-codex-0.117.0-remove-patch-sections.patch"
-                 "rust-codex-0.120.0-connectors-cache-test-race.patch"
+                 "rust-codex-0.124.0-code-mode-stub-toolname.patch"
+                 "rust-codex-0.124.0-remove-patch-sections.patch"
                  "rust-codex-0.120.0-remove-libwebrtc.patch"
                  "rust-codex-0.98.0-test-shebangs.patch"
                  "rust-codex-0.120.0-test-timeout.patch"))))
@@ -69,7 +69,12 @@
     (arguments
      (list
       #:install-source? #f
-      #:cargo-install-paths '(list "cli" "exec" "exec-server"
+      ;; exec-server is library-only in 0.124 (no [[bin]] in
+      ;; exec-server/Cargo.toml); cargo install --path exec-server fails
+      ;; with "no packages found with binaries or examples".  Drop it
+      ;; from the install paths -- the library is consumed via the
+      ;; workspace by other binaries here, not installed standalone.
+      #:cargo-install-paths '(list "cli" "exec"
                                    "linux-sandbox" "mcp-server"
                                    "app-server" "tui")
       ;; schema_fixtures_match_generated (upstream fixture is stale:
@@ -317,7 +322,164 @@
                                 ;; (chatgpt.com, api.github.com) wait
                                 ;; for TCP timeout instead of failing
                                 ;; instantly at TLS, eating the budget.
-                                "--skip" "mcp_server_status_list_tools_and_auth_only_skips_slow_inventory_calls")
+                                "--skip" "mcp_server_status_list_tools_and_auth_only_skips_slow_inventory_calls"
+                                ;;; BEGIN Stack overflow in 'current_thread'
+                                ;;; tokio runtime.  The sibling tests in
+                                ;;; tracing_tests.rs use the local helper
+                                ;;; run_current_thread_test_with_stack
+                                ;;; (4 MiB) but this one uses bare
+                                ;;; #[tokio::test] on the 2 MiB default
+                                ;;; test-thread stack, and TurnStart's
+                                ;;; future graph exceeds it.  With
+                                ;;; RUST_MIN_STACK raised the overflow is
+                                ;;; gone but the test then deterministically
+                                ;;; times out waiting for a span tagged
+                                ;;; codex.op = "user_input" on the remote
+                                ;;; trace that upstream never emits on that
+                                ;;; trace in our environment.
+                                "--skip" "turn_start_jsonrpc_span_parents_core_turn_spans"
+                                ;;; END tracing test stack/timeout
+                                ;;; BEGIN The upstream loader resolves the
+                                ;;; MCP OAuth credentials store mode by
+                                ;;; calling
+                                ;;; resolve_mcp_oauth_credentials_store_mode
+                                ;;; with env!("CARGO_PKG_VERSION") -- which
+                                ;;; in the released 0.124.0 tarball is
+                                ;;; "0.124.0".  These fixture tests
+                                ;;; construct the expected Config by
+                                ;;; passing the LOCAL_DEV_BUILD_VERSION
+                                ;;; constant ("0.0.0") to the same
+                                ;;; resolver, and the resolver only returns
+                                ;;; File for "0.0.0" -- Auto otherwise.
+                                ;;; Upstream CI builds from a checkout
+                                ;;; still carrying version = "0.0.0" so the
+                                ;;; tests pass there; they cannot pass
+                                ;;; against a released tag.
+                                "--skip" "test_precedence_fixture_with_gpt3_profile"
+                                "--skip" "test_precedence_fixture_with_gpt5_profile"
+                                "--skip" "test_precedence_fixture_with_o3_profile"
+                                "--skip" "test_precedence_fixture_with_zdr_profile"
+                                ;;; END LOCAL_DEV_BUILD_VERSION fixture mismatch
+                                ;;; BEGIN Verifies that Codex's user-shell
+                                ;;; spawn produces a child where
+                                ;;; CODEX_SANDBOX_NETWORK_DISABLED is unset
+                                ;;; (asserts stdout == "not-set").  We
+                                ;;; deliberately set that env var at the
+                                ;;; check phase to trigger upstream's
+                                ;;; skip_if_no_network! guards; the var then
+                                ;;; leaks into the spawned shell and the
+                                ;;; assertion fails.  The guix skip is a
+                                ;;; direct cost of the network-gate fix --
+                                ;;; trading one broken test for two that
+                                ;;; now skip cleanly.
+                                "--skip" "user_shell_command_does_not_set_network_sandbox_env_var"
+                                ;;; END CODEX_SANDBOX_NETWORK_DISABLED leak
+                                ;;; BEGIN The exec-server/tests/file_system
+                                ;;; integration tests invoke the real
+                                ;;; system bwrap, which tries to execvp the
+                                ;;; test binary at the cargo target path
+                                ;;; under the build dir.  Same root cause
+                                ;;; as the existing
+                                ;;; sandbox_reenables_writable_subpaths_under_unreadable_parents
+                                ;;; skip: guix builds live under /tmp but
+                                ;;; bwrap's mount namespace excludes /tmp,
+                                ;;; making the binary invisible inside the
+                                ;;; namespace.
+                                "--skip" "file_system_copy_preserves_symlink_source"
+                                "--skip" "file_system_copy_rejects_symlink_escape_destination"
+                                "--skip" "file_system_copy_rejects_symlink_escape_source"
+                                "--skip" "file_system_create_directory_rejects_symlink_escape"
+                                "--skip" "file_system_read_directory_rejects_symlink_escape"
+                                "--skip" "file_system_remove_rejects_symlink_escape"
+                                "--skip" "file_system_remove_removes_symlink_not_target"
+                                "--skip" "file_system_sandboxed_read_allows_readable_root"
+                                "--skip" "file_system_sandboxed_read_rejects_symlink_escape"
+                                "--skip" "file_system_sandboxed_read_rejects_symlink_parent_dotdot_escape"
+                                "--skip" "file_system_sandboxed_write_allows_additional_write_root"
+                                "--skip" "file_system_sandboxed_write_rejects_symlink_escape"
+                                "--skip" "file_system_sandboxed_write_rejects_unwritable_path"
+                                ;;; END bwrap-cant-see-/tmp file_system tests
+                                ;;; BEGIN Landlock is unavailable on Guix,
+                                ;;; so the sandbox cannot deny network
+                                ;;; syscalls.  These tests expect
+                                ;;; SandboxErr::Denied for the nc, ping,
+                                ;;; ssh, getent, and dev_tcp_redirection
+                                ;;; commands but those commands instead
+                                ;;; block on connect() until the test's 2s
+                                ;;; timeout fires (Timeout, exit 124).
+                                ;;; Same root cause as the Landlock skips
+                                ;;; at the top of this list; new test names
+                                ;;; in 0.124.
+                                "--skip" "sandbox_blocks_nc"
+                                "--skip" "sandbox_blocks_ping"
+                                "--skip" "sandbox_blocks_dev_tcp_redirection"
+                                "--skip" "sandbox_blocks_getent"
+                                "--skip" "sandbox_blocks_ssh"
+                                ;;; END Landlock network block
+                                ;;; BEGIN Requires github.com network access.
+                                ;;; With no "extraKnownMarketplaces" entry
+                                ;;; in settings.json,
+                                ;;; collect_marketplace_import_sources
+                                ;;; inserts a fallback entry for the
+                                ;;; "claude-plugins-official" marketplace
+                                ;;; pointing at the github shorthand
+                                ;;; "anthropics/claude-plugins-official".
+                                ;;; add_marketplace -> parse_marketplace_source
+                                ;;; expands that to a github.com/.git URL
+                                ;;; and clone_git_source runs 'git clone'.
+                                ;;; The Guix build sandbox has no network,
+                                ;;; so the clone fails and the marketplace
+                                ;;; lands in failed_marketplaces.  No mock
+                                ;;; cloner is injected via
+                                ;;; ExternalAgentConfigService::new_for_test,
+                                ;;; so there is no in-tree way to satisfy
+                                ;;; the test offline.
+                                "--skip" "import_plugins_infers_claude_official_marketplace_when_missing_from_settings"
+                                ;;; END github.com network access
+                                ;;; BEGIN Async race between the rollout
+                                ;;; writer task and a direct SQLite read.
+                                ;;; The test calls
+                                ;;; update_memory_settings_with_app_server,
+                                ;;; which routes through the in-memory
+                                ;;; thread path on the app-server's
+                                ;;; ThreadMemoryModeSet handler ->
+                                ;;; Session::set_thread_memory_mode ->
+                                ;;; persist_thread_memory_mode_update,
+                                ;;; which writes a RolloutItem::SessionMeta
+                                ;;; with the new mode to the rollout file
+                                ;;; via recorder.record_items + flush.  The
+                                ;;; rollout writer task then asynchronously
+                                ;;; calls sync_thread_state_after_write,
+                                ;;; which calls state_db::apply_rollout_items
+                                ;;; to mirror the SessionMeta into SQLite.
+                                ;;; flush() only awaits the rollout-file
+                                ;;; write, not the subsequent SQLite sync.
+                                ;;; The test opens a fresh StateRuntime and
+                                ;;; reads get_thread_memory_mode
+                                ;;; immediately, so it observes the creation
+                                ;;; default of "enabled" written by
+                                ;;; upsert_thread_with_creation_memory_mode
+                                ;;; instead of the new "disabled".  Upstream
+                                ;;; CI wins this race; we lose.
+                                "--skip" "update_memory_settings_updates_current_thread_memory_mode"
+                                ;;; END memory-mode rollout/sqlite race
+                                ;;; BEGIN The Stopwatch::new constructor in
+                                ;;; codex_shell_escalation anchors
+                                ;;; T0 = Instant::now() at construction;
+                                ;;; the spawned cancellation task fires at
+                                ;;; T0 + limit.  The test captures
+                                ;;; start = Instant::now() at T1 > T0 (after
+                                ;;; cancellation_token() returns) and
+                                ;;; asserts start.elapsed() >= limit,
+                                ;;; i.e. (T0 + limit) - T1 >= limit, which
+                                ;;; is always false by the offset T1 - T0.
+                                ;;; The test only passes when scheduler
+                                ;;; jitter on the sleep wakeup happens to
+                                ;;; exceed that offset.  Upstream wins the
+                                ;;; race; we don't always.
+                                "--skip" "cancellation_receiver_fires_after_limit"
+                                ;;; END Stopwatch construction/start offset race
+                                )
       #:cargo-package-crates
       ''(;;; Tier 0: No internal deps.
          "codex-ansi-escape"
@@ -358,22 +520,31 @@
          "codex-debug-client"
          "codex-analytics"
          "codex-rollout"
+         "codex-rollout-trace"
          "codex-terminal-detection"
          "codex-utils-approval-presets"
          "codex-utils-cli"
+         "codex-uds"
+         "codex-install-context"
+         "codex-device-key"
          ;;; Tier 2.
          "codex-app-server-protocol"
          "codex-rmcp-client"
          "codex-otel"
+         "codex-thread-store"
          "codex-state"
          "codex-features"
+         "codex-model-provider"
          "codex-config"
+         "codex-agent-identity"
+         "codex-aws-auth"
          "codex-hooks"
-         "codex-instructions"
          "codex-code-mode"
          "codex-feedback"
          "codex-skills"
+         "codex-test-binary-support"
          "codex-core"
+         "codex-core-plugins"
          "codex-utils-sandbox-summary"
          "codex-linux-sandbox"
          "codex-sandboxing"
@@ -425,7 +596,7 @@
               ;; Update them to match the actual package version.
               (let ((snap-files (find-files "." "\\.snap$")))
                 (substitute* snap-files
-                  (("\\(v0\\.0\\.0\\)   ") "(v0.120.0) ")))))
+                  (("\\(v0\\.0\\.0\\)   ") "(v0.124.0) ")))))
           (add-after 'chdir-to-workspace 'patch-git-deps-to-vendor
             (lambda _
               ;; Replace git dependencies with version references so cargo
@@ -436,32 +607,55 @@
                 (("runfiles = \\{ git = [^}]+\\}")
                  "runfiles = \"0.1.0\""))
               ;; Remove workspace members that have unbuildable deps
-              ;; (libwebrtc requires git fetch, v8-poc requires V8).
+              ;; (v8-poc requires V8).  code-mode stays a workspace member
+              ;; so its codex-protocol resolves to the same local copy as
+              ;; the rest of the build; disabling its default features
+              ;; (below) avoids pulling in V8.
               (substitute* "Cargo.toml"
-                (("\"v8-poc\",") "")
-                (("\"code-mode\",") ""))
-              ;; Disable V8 runtime in codex-code-mode: remove path
-              ;; so cargo resolves it from the vendor (where it has
-              ;; optional = true on v8) and disable default features.
+                (("\"v8-poc\",") ""))
+              ;; Disable V8 runtime in codex-code-mode by turning off
+              ;; default features.  Keep path= so code-mode is resolved
+              ;; from the local source tree and shares codex-protocol
+              ;; (and other workspace crates) with the rest of the build;
+              ;; resolving it from the vendor instead introduces a
+              ;; duplicate codex-protocol and causes E0308 type
+              ;; mismatches in codex-tools.
               (substitute* "Cargo.toml"
                 (("codex-code-mode = \\{ path = \"code-mode\" \\}")
-                 "codex-code-mode = { version = \"0.120.0\", default-features = false }"))))
+                 "codex-code-mode = { path = \"code-mode\", default-features = false }"))
+              ;; cargo build at workspace root ignores per-dep
+              ;; default-features=false and builds code-mode with its
+              ;; own default features, which include v8-runtime and
+              ;; would pull in V8.  Make the default feature empty.
+              (substitute* "code-mode/Cargo.toml"
+                (("^default = \\[\"v8-runtime\"\\]") "default = []"))))
           (add-after 'patch-git-deps-to-vendor 'add-version-to-workspace-deps
             (lambda _
               ;; cargo package requires all dependencies to have versions.
-              ;; cargo package requires all dependencies to have versions.
-              ;; Add version = "0.120.0" to internal path dependencies.
+              ;; Add version = "0.124.0" to internal path dependencies.
               (let ((cargo-files (find-files "." "^Cargo\\.toml$")))
                 (substitute* cargo-files
                   ;; Handle inline deps: name = { path = "..." }
                   (("(codex-[a-z0-9-]+) = \\{ path = " all name)
-                   (string-append name " = { version = \"0.120.0\", path = "))
+                   (string-append name " = { version = \"0.124.0\", path = "))
                   ;; Handle inline deps with package: name = { package = "...", path = "..." }
                   (("(codex-[a-z0-9-]+) = \\{ package = " all name)
-                   (string-append name " = { version = \"0.120.0\", package = "))
+                   (string-append name " = { version = \"0.124.0\", package = "))
                   ;; Handle section deps: [dependencies.X] with path = "..."
                   (("^(path = \"\\.\\./[^\"]*\")" all path-line)
-                   (string-append path-line "\nversion = \"0.120.0\""))))))
+                   (string-append path-line "\nversion = \"0.124.0\""))))))
+          (add-after 'chdir-to-workspace 'use-gnu-store-in-sandbox
+            (lambda _
+              ;; LINUX_PLATFORM_DEFAULT_READ_ROOTS in linux-sandbox/src/
+              ;; bwrap.rs is the read-only baseline that codex's bwrap
+              ;; sandbox bind-mounts so commands can read /usr/bin/ls,
+              ;; libc, etc.  Upstream lists "/nix/store" for NixOS;
+              ;; Guix's equivalent is "/gnu/store".  Without this swap,
+              ;; the codex sandbox cannot locate any binaries on a Guix
+              ;; system because every "system" path resolves into
+              ;; /gnu/store/<hash>-pkg/bin/...
+              (substitute* "linux-sandbox/src/bwrap.rs"
+                (("\"/nix/store\"") "\"/gnu/store\""))))
           (add-after 'chdir-to-workspace 'patch-hardcoded-paths
             (lambda* (#:key inputs #:allow-other-keys)
               (let ((bash-bin (string-append
@@ -561,10 +755,12 @@
                 ;; double quotes.
                 (substitute*
                   (list "core/src/plugins/startup_sync_tests.rs"
+                        "core/src/tools/runtimes/shell/unix_escalation_tests.rs"
                         "core/tests/suite/client.rs"
                         "core/tests/suite/js_repl.rs"
                         "core/tests/suite/skill_approval.rs"
                         "core/tests/suite/user_notification.rs"
+                        "exec-server/tests/file_system.rs"
                         "login/src/auth/auth_tests.rs"
                         "models-manager/src/manager_tests.rs"
                         "sandboxing/src/bwrap_tests.rs")
@@ -613,7 +809,17 @@
               ;; ~/... and 30 snapshot tests fail.
               (setenv "HOME" "/tmp/guix-home")
               (mkdir-p "/tmp/guix-home")
-              (setenv "USER" "nixbld"))))))
+              (setenv "USER" "nixbld")
+              ;; Default libtest thread stack is 2 MiB, which is not
+              ;; enough for tokio current_thread tests that drive
+              ;; codex-core's full turn pipeline.  Upstream gates such
+              ;; tests through run_current_thread_test_with_stack (4 MiB)
+              ;; in app-server/src/message_processor/tracing_tests.rs;
+              ;; raise the global default so future additions that
+              ;; forget the wrapper still pass.
+              (setenv "RUST_MIN_STACK" "8388608")
+              ;; Disable network access.
+              (setenv "CODEX_SANDBOX_NETWORK_DISABLED" "1"))))))
     (native-inputs `(("bubblewrap" ,bubblewrap) ;tests need bwrap on PATH
                      ("clang" ,clang)
                      ("cmake-minimal" ,cmake-minimal)
@@ -628,6 +834,8 @@
     (inputs (cons* bash-minimal coreutils git-minimal sed
                    libcap oniguruma openssl sqlite zlib `(,zstd "lib")
                    (cargo-inputs 'codex)))
+    (properties '((timeout . 108000) ; 30  hours
+                  (max-silent-time . 54000))) ; 15 hours
     (home-page "https://github.com/openai/codex")
     (synopsis "AI-assisted coding CLI and TUI")
     (description

gnu/packages/compiler-tools.scm

@@ -0,0 +1,114 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2021 Foo Chuan Wei <chuanwei.foo@hotmail.com>
+;;; Copyright © 2022 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2022 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2024-2025 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2025 Anderson Torres <anderson.torres.8519@gmail.com>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages compiler-tools)
+  #:use-module (gnu packages autotools)
+  #:use-module (gnu packages gawk)
+  #:use-module (guix build-system gnu)
+  #:use-module (guix build-system trivial)
+  #:use-module (guix download)
+  #:use-module (guix gexp)
+  #:use-module (guix git-download)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (guix packages))
+
+(define-public byacc
+  (package
+    (name "byacc")
+    (version "20240109")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://invisible-mirror.net/archives/byacc/byacc-"
+             version ".tgz"))
+       (sha256
+        (base32
+         "0il4w1vwbglayakywyghiqhcjpg1yvv5ww2p8ylz32bi05wpg2gj"))
+       (snippet
+        #~(begin
+            ;; Remove machine-generated files
+            (for-each delete-file
+                      (list "configure"
+                            "btyaccpar.c"
+                            "yaccpar.c"))))))
+    (build-system gnu-build-system)
+    (native-inputs
+     (list autoconf
+           automake
+           gawk))
+    (home-page "https://invisible-island.net/byacc/byacc.html")
+    (synopsis "Berkeley Yacc LALR parser generator")
+    (description
+     "Berkeley Yacc is an LALR(1) parser generator.  Yacc reads the grammar
+specification from a file and generates an LALR(1) parser for it.  The parsers
+consist of a set of LALR(1) parsing tables and a driver routine written in the
+C programming language.")
+    (license license:public-domain)))
+
+(define-public oyacc
+  (package
+    (name "oyacc")
+    (version "6.6")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/ibara/yacc")
+              (commit (string-append name "-" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1a2nyg2nnh1las40klnp037sapaaph86kjx258cpqcwnk4cv3rnx"))))
+    (build-system gnu-build-system)
+    (arguments
+     (list
+      #:test-target "test"
+      #:make-flags
+      #~(list (string-append "BINDIR=" #$output "/bin")
+              (string-append "MANDIR=" #$output "/share/man/man1"))))
+    (home-page "https://github.com/ibara/yacc")
+    (synopsis "Portable YACC from OpenBSD")
+    (description
+     "@command{oyacc} is a portable version of the OpenBSD's
+@acronym{yacc, Yet Another Compiler Compiler} program, with no dependencies
+besides libc.")
+    (license license:bsd-2)))
+
+(define-public oyacc-as-yacc-wrapper
+  (package/inherit oyacc
+    (name "oyacc-as-yacc-wrapper")
+    (build-system trivial-build-system)
+    (arguments
+     (list
+      #:builder
+      (with-imported-modules '((guix build utils))
+        #~(begin
+            (use-modules (guix build utils))
+            (let ((bindir (string-append #$output "/bin"))
+                  (oyacc (string-append #$(this-package-input "oyacc")
+                                        "/bin/oyacc")))
+              (mkdir-p bindir)
+              (symlink oyacc (string-append bindir "/yacc")))))))
+    (inputs (list oyacc))
+    (description
+     "This package provides the @command{yacc} command, implemented as a
+symbolic link to the @command{oyacc} command from the same-named package.")))

gnu/packages/compression.scm

@@ -1475,7 +1475,7 @@ for most inputs, but the resulting compressed files are anywhere from 20% to
 (define-public 7zip
   (package
     (name "7zip")
-    (version "26.00")
+    (version "26.01")
     (source
      (origin
        (method git-fetch)
@@ -1483,7 +1483,7 @@ for most inputs, but the resulting compressed files are anywhere from 20% to
               (url "https://github.com/ip7z/7zip")
               (commit version)))
        (sha256
-        (base32 "1fvgl9qp2pl5c0jmvgbdx6qig3qd80mhxvml42yby8y412x65sh7"))
+        (base32 "0qwzn9pz1m6f8q20cqgmfqp1qx6s7959xnyikpr60n1v8c1mj98q"))
        (file-name (git-file-name name version))
        (modules '((guix build utils)
                   (ice-9 regex)))
@@ -2375,7 +2375,9 @@ non-Windows systems without running the actual installer using wine.")
      (sha256
       (base32 "17k679glx05v23n8kxbg9vmbf89i2252g5xj6w3dkz19asmh1zd6"))))
    (build-system gnu-build-system)
-   (native-inputs (list autoconf automake libtool nasm))
+   (native-inputs
+    (cons* autoconf automake libtool
+           (maybe-nasm)))
    (home-page "https://github.com/intel/isa-l")
    (synopsis "Intelligent storage acceleration library")
    (description "ISA-L is a collection of optimized low-level functions

gnu/packages/containers.scm

@@ -50,6 +50,7 @@
   #:use-module (gnu packages bash)
   #:use-module (gnu packages check)
   #:use-module (gnu packages compression)
+  #:use-module (gnu packages docker)
   #:use-module (gnu packages glib)
   #:use-module (gnu packages gcc)
   #:use-module (gnu packages gettext)
@@ -70,6 +71,7 @@
   #:use-module (gnu packages networking)
   #:use-module (gnu packages package-management)
   #:use-module (gnu packages pkg-config)
+  #:use-module (gnu packages prometheus)
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages python-build)
   #:use-module (gnu packages python-check)
@@ -121,6 +123,365 @@
      "This package provides a Go library to read and manipulate checkpoint
 archives as created by Podman, CRI-O and containerd.")
     (license license:asl2.0)))
+
+(define-public go-github-com-containerd-containerd-v2
+  (package
+    (name "go-github-com-containerd-containerd-v2")
+    (version "2.2.3")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/containerd/containerd")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0wxy5np689571s6lw77mx63nw75fx85w5svi0jplksmqzmjqp8wd"))
+       (snippet
+        #~(begin (use-modules (guix build utils))
+         (delete-file-recursively "vendor")
+            ;; Submodules with their own go.mod files and packaged separately:
+            ;;
+            ;; - github.com/containerd/containerd/api
+            (delete-file-recursively "api")))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:skip-build? #t
+      #:import-path "github.com/containerd/containerd/v2"
+      #:test-subdirs
+      #~(list "cmd/protoc-gen-go-fieldpath/..."
+              "core/containers/..."
+              "core/content/..."
+              "core/diff"
+              "core/diff/apply"
+              "core/events/..."
+              "core/images/..."
+              "core/introspection/..."
+              "core/leases/..."
+              "core/metrics/..."
+              "core/remotes/..."
+              "core/sandbox/..."
+              "core/streaming/..."
+              "core/transfer"
+              "core/transfer/archive/..."
+              "core/transfer/image/..."
+              "core/transfer/local/..."
+              "core/transfer/plugins/..."
+              "core/transfer/streaming/..."
+              "core/unpack/..."
+              "internal/cleanup/..."
+              "internal/erofsutils/..."
+              "internal/eventq/..."
+              "internal/failpoint/..."
+              "internal/fsverity/..."
+              "internal/kmutex/..."
+              "internal/lazyregexp/..."
+              "internal/pprof/..."
+              "internal/randutil/..."
+              "internal/registrar/..."
+              "internal/tomlext/..."
+              "internal/truncindex/..."
+              "internal/userns/..."
+              "internal/wintls/..."
+              "pkg/apparmor/..."
+              "pkg/archive/..."
+              "pkg/atomicfile/..."
+              "pkg/blockio/..."
+              "pkg/cap/..."
+              "pkg/cio..."
+              "pkg/deprecation/..."
+              "pkg/dialer/..."
+              "pkg/display/..."
+              "pkg/epoch/..."
+              "pkg/fifosync/..."
+              "pkg/filters/..."
+              "pkg/gc/..."
+              "pkg/httpdbg/..."
+
+              ;; TODO: Check why these submodule fail to build.
+              ;; "client/..."
+              ;; "cmd/containerd-shim-runc-v2/..."
+              ;; "cmd/containerd-stress/..."
+              ;; "cmd/containerd/..."
+              ;; "cmd/ctr/..."
+              ;; "cmd/gen-manpages/..."
+              ;; "contrib/..."
+              ;; "core/diff/proxy"
+              ;; "core/metadata/..."
+              ;; "core/mount/..."
+              ;; "core/runtime/..."
+              ;; "core/snapshots/..."
+              ;; "core/transfer/proxy/..."
+              ;; "core/transfer/registry/..."
+              ;; "integration/..."
+              ;; "internal/cri/..."
+              ;; "internal/nri/..."
+              ;; "pkg/cdi/..."
+              #;"plugins/...")
+      #:test-flags
+      #~(list "-skip" (string-join
+                      ;; panic: cannot statfs cgroup root [recovered]
+                      (list "TestValidateConfig"
+                            ;; io_test.go:40: failed to start binary process:
+                            ;; fork/exec /bin/echo: no such file or directory
+                            "TestNewBinaryIO"
+                            ;; expected success: got executable file not found in $PATH
+                            "TestExecutorWithArgs"
+                            "TestSetEnv"
+                            "TestStdIOPipes"
+                            ;; panic: cannot statfs cgroup root
+                            "TestContainerCapabilities"
+                            "TestContainerSpecTty"
+                            "TestContainerSpecReadonlyRootfs"
+                            "TestContainerSpecWithExtraMounts"
+                            "TestContainerAndSandboxPrivileged"
+                            "TestPrivilegedBindMount"
+                            "TestCgroupNamespace"
+                            "TestPidNamespace/node_namespace_mode"
+                            ;; failed to apply b: invalid argument
+                            "TestDiffTar/IgnoreSockets"
+                            "TestBinDirVerifyImage/max_verifiers_=_-1,_with_timeout"
+                            "TestContainerSpecDefaultPath"
+                            ;; Error: Not equal:
+                            ;;        expected: 1000
+                            ;;        actual  : 123
+                            "TestSetPositiveOomScoreAdjustment")
+                       "|"))))
+    (native-inputs
+     (list go-github-com-stretchr-testify))
+    (propagated-inputs
+     (list go-dario-cat-mergo
+           go-github-com-adalogics-go-fuzz-headers
+           go-github-com-checkpoint-restore-checkpointctl
+           go-github-com-checkpoint-restore-go-criu-v7
+           go-github-com-containerd-btrfs-v2
+           go-github-com-containerd-cgroups-v3
+           go-github-com-containerd-console
+           go-github-com-containerd-containerd-api
+           go-github-com-containerd-continuity
+           go-github-com-containerd-errdefs
+           go-github-com-containerd-errdefs-pkg
+           go-github-com-containerd-fifo
+           go-github-com-containerd-go-cni
+           go-github-com-containerd-go-runc
+           go-github-com-containerd-imgcrypt-v2
+           go-github-com-containerd-log
+           go-github-com-containerd-nri
+           go-github-com-containerd-otelttrpc
+           go-github-com-containerd-platforms
+           go-github-com-containerd-plugin
+           go-github-com-containerd-ttrpc
+           go-github-com-containerd-typeurl-v2
+           go-github-com-containerd-zfs-v2
+           go-github-com-containernetworking-cni
+           go-github-com-containernetworking-plugins
+           go-github-com-coreos-go-systemd-v22
+           go-github-com-davecgh-go-spew
+           go-github-com-distribution-reference
+           go-github-com-docker-go-events
+           go-github-com-docker-go-metrics
+           go-github-com-docker-go-units
+           go-github-com-emicklei-go-restful-v3
+           go-github-com-fsnotify-fsnotify
+           go-github-com-google-certtostore
+           go-github-com-google-go-cmp
+           go-github-com-google-uuid
+           go-github-com-grpc-ecosystem-go-grpc-middleware-providers-prometheus
+           go-github-com-intel-goresctrl
+           go-github-com-klauspost-compress
+           go-github-com-mdlayher-vsock
+           ;;go-github-com-microsoft-go-winio ;Windows only
+           ;;go-github-com-microsoft-hcsshim ;Windows only
+           go-github-com-moby-locker
+           go-github-com-moby-sys-mountinfo
+           go-github-com-moby-sys-sequential
+           go-github-com-moby-sys-signal
+           go-github-com-moby-sys-symlink
+           go-github-com-moby-sys-user
+           go-github-com-moby-sys-userns
+           go-github-com-opencontainers-go-digest
+           go-github-com-opencontainers-image-spec
+           go-github-com-opencontainers-runtime-spec
+           go-github-com-opencontainers-runtime-tools
+           go-github-com-opencontainers-selinux
+           go-github-com-pelletier-go-toml-v2
+           go-github-com-prometheus-client-golang
+           go-github-com-sirupsen-logrus
+           go-github-com-tchap-go-patricia-v2
+           go-github-com-urfave-cli-v2
+           go-github-com-vishvananda-netlink
+           go-github-com-vishvananda-netns
+           go-go-etcd-io-bbolt
+           go-go-opentelemetry-io-contrib-instrumentation-google-golang-org-grpc-otelgrpc
+           go-go-opentelemetry-io-contrib-instrumentation-net-http-otelhttp
+           go-go-opentelemetry-io-otel
+           go-go-opentelemetry-io-otel-exporters-otlp-otlptrace
+           go-go-opentelemetry-io-otel-exporters-otlp-otlptrace-otlptracegrpc
+           go-go-opentelemetry-io-otel-exporters-otlp-otlptrace-otlptracehttp
+           go-go-opentelemetry-io-otel-sdk
+           go-go-opentelemetry-io-otel-trace
+           go-go-uber-org-goleak
+           go-golang-org-x-mod
+           go-golang-org-x-sync
+           go-golang-org-x-sys
+           go-golang-org-x-time
+           go-google-golang-org-genproto-googleapis-rpc
+           go-google-golang-org-grpc
+           go-google-golang-org-protobuf
+           go-gopkg-in-inf-v0
+           go-k8s-io-apimachinery
+           go-k8s-io-client-go
+           go-k8s-io-cri-api
+           go-k8s-io-klog-v2
+           go-tags-cncf-io-container-device-interface))
+    (home-page "https://containerd.io/")
+    (synopsis "Container runtime support daemon")
+    (description
+     "Containerd is a container runtime with an emphasis on simplicity,
+robustness, and portability.  It is available as a daemon, which can manage
+the complete container lifecycle of its host system: image transfer and
+storage, container execution and supervision, low-level storage and network
+attachments, etc.")
+    (license license:asl2.0)))
+
+(define-public go-github-com-containers-gvisor-tap-vsock
+  (package
+    (name "go-github-com-containers-gvisor-tap-vsock")
+    (version "0.8.8")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/containers/gvisor-tap-vsock")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1xz710dmy58gngd0qizjw8g9nkraksqald8vzhwc5h36dqkc8nrf"))
+       (modules '((guix build utils)))
+       (snippet
+        #~(begin
+            (delete-file-recursively "vendor")
+            ;; Submodules with their own go.mod files and packaged separately:
+            ;;
+            ;; - github.com/containers/gvisor-tap-vsock/tools
+            (delete-file-recursively "tools")))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:skip-build? #t
+      #:import-path "github.com/containers/gvisor-tap-vsock"
+      #:unpack-path "github.com/containers/gvisor-tap-vsock"
+      #:build-flags
+      #~(list (string-append "-ldflags="
+                             "-X github.com/containers/gvisor-tap-vsock"
+                             "/pkg/types.gitVersion=" #$version))
+      #:test-flags
+      #~(list "-skip"
+              (string-join
+               ;; Received unexpected error:
+               ;; listen unix /tmp/guix-.../test.sock: bind: invalid argument
+               (list "TestNotificationSender_Success"
+                     ;; Requires network
+                     "TestSuite"
+                     "TestDNS")
+               "|"))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'prune-tests
+            (lambda* (#:key unpack-path #:allow-other-keys)
+              (with-directory-excursion (string-append "src/" unpack-path)
+                ;; Requires working DNS.
+                (substitute* "pkg/services/dns/dns_test.go"
+                  (("Should pass DNS requests to default system DNS.*" all)
+                   (string-append all "\n" "ginkgo.Skip(\"No network.\");"))
+                  (("\"redhat.com\",")
+                   "\"localhost\",")
+                  (("\"52.200.142.250\"")
+                   "\"127.0.0.1\""))))))))
+    (native-inputs
+     (list go-github-com-stretchr-testify
+           go-github-com-foxcpp-go-mockdns))
+    (propagated-inputs
+     (list go-github-com-apparentlymart-go-cidr
+           go-github-com-containers-winquit
+           go-github-com-coreos-stream-metadata-go
+           go-github-com-dustin-go-humanize
+           go-github-com-google-gopacket
+           go-github-com-inetaf-tcpproxy
+           go-github-com-insomniacslk-dhcp
+           ;; go-github-com-linuxkit-virtsock  ;Windows only
+           go-github-com-mdlayher-vsock
+           ;; go-github-com-microsoft-go-winio ;Windows only
+           go-github-com-miekg-dns
+           go-github-com-onsi-ginkgo
+           go-github-com-onsi-gomega
+           go-github-com-opencontainers-go-digest
+           go-github-com-sirupsen-logrus
+           go-github-com-songgao-packets
+           go-github-com-songgao-water
+           go-github-com-vishvananda-netlink
+           go-golang-org-x-crypto
+           go-golang-org-x-mod
+           go-golang-org-x-sync
+           go-golang-org-x-sys
+           go-gopkg-in-yaml-v3
+           go-gvisor-dev-gvisor))
+    (home-page "https://github.com/containers/gvisor-tap-vsock")
+    (synopsis "Network stack for virtualization based on gVisor")
+    (description "This package provides a replacement for @code{libslirp} and
+@code{VPNKit}, written in pure Go.  It is based on the network stack of gVisor
+and brings a configurable DNS server and dynamic port forwarding.
+
+It can be used with QEMU, Hyperkit, Hyper-V and User-Mode Linux.
+
+The binary is called @command{gvproxy}.")
+    (license license:asl2.0)))
+
+(define-public go-github-com-rootless-containers-rootlesskit-v3
+  (package
+    (name "go-github-com-rootless-containers-rootlesskit-v3")
+    (version "3.0.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/rootless-containers/rootlesskit")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0giw1whjpm64h8f1iamgym246rr3wl01w7zgw4lygrj7dqk3clmb"))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:skip-build? #t
+      #:import-path "github.com/rootless-containers/rootlesskit/v3"))
+    (propagated-inputs
+     (list go-github-com-containernetworking-plugins
+           go-github-com-containers-gvisor-tap-vsock
+           go-github-com-gofrs-flock
+           go-github-com-google-uuid
+           go-github-com-gorilla-mux
+           go-github-com-insomniacslk-dhcp
+           go-github-com-masterminds-semver-v3
+           go-github-com-moby-sys-mountinfo
+           go-github-com-moby-vpnkit
+           go-github-com-sirupsen-logrus
+           go-github-com-songgao-water
+           go-github-com-urfave-cli-v2
+           go-golang-org-x-sync
+           go-golang-org-x-sys
+           go-gotest-tools-v3))
+    (home-page "https://github.com/rootless-containers/rootlesskit")
+    (synopsis "Linux-native fakeroot using user namespaces in Golang")
+    (description
+     "@code{RootlessKit} is a Linux-native implementation of \"fake root\" using
+@url{http://man7.org/linux/man-pages/man7/user_namespaces.7.html,(code
+user_namespaces(7))}.  It is used to run containers engines as an
+unprivileged user, known as \"Rootless mode\".")
+    (license license:asl2.0)))
+
+
 
 ;;;
 ;;; Executables:
@@ -150,7 +511,7 @@ as created by Podman, CRI-O and containerd.")))
 (define-public crun
   (package
     (name "crun")
-    (version "1.26")
+    (version "1.27.1")
     (source
      (origin
        (method url-fetch)
@@ -160,7 +521,7 @@ as created by Podman, CRI-O and containerd.")))
              "/crun-" version ".tar.gz"))
        (sha256
         (base32
-         "1hdwk5dpsz9danxiyfli07b7sqid6hr34qmhs5qjl2dcc00is89j"))))
+         "1w782s95f3xvw3fb66l2ciqkqsg4bk7n9ph31jmvn669ap272ymy"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -545,7 +906,7 @@ Layer-4 sockets.")
 (define-public cni-plugins
   (package
     (name "cni-plugins")
-    (version "1.9.0")
+    (version "1.9.1")
     (source
      (origin
        (method git-fetch)
@@ -554,7 +915,7 @@ Layer-4 sockets.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0l3jgbizq0yaxld07hsdbh6ix2w6i789101ddk0ldnsmr93jg6ni"))
+        (base32 "12z6w2jk6xgfiwdxys7skpkxldz1cgaa7scgfcr90lsghay59s6w"))
        (snippet
         #~(begin (use-modules (guix build utils))
                  (delete-file-recursively "vendor")))))
@@ -595,92 +956,33 @@ configure network interfaces in Linux containers.")
     (license license:asl2.0)))
 
 (define-public gvisor-tap-vsock
-  (package
+  (package/inherit go-github-com-containers-gvisor-tap-vsock
     (name "gvisor-tap-vsock")
-    (version "0.8.8")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/containers/gvisor-tap-vsock")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1xz710dmy58gngd0qizjw8g9nkraksqald8vzhwc5h36dqkc8nrf"))
-       (modules '((guix build utils)))
-       (snippet
-        #~(begin
-            (delete-file-recursively "vendor")
-            ;; Submodules with their own go.mod files and packaged separately:
-            ;;
-            ;; - github.com/containers/gvisor-tap-vsock/tools
-            (delete-file-recursively "tools")))))
-    (build-system go-build-system)
     (arguments
-     (list
-      #:install-source? #f
-      #:import-path "github.com/containers/gvisor-tap-vsock/cmd/gvproxy"
-      #:unpack-path "github.com/containers/gvisor-tap-vsock"
-      #:build-flags
-      #~(list (string-append "-ldflags="
-                             "-X github.com/containers/gvisor-tap-vsock"
-                             "/pkg/types.gitVersion=" #$version))
-      #:test-flags
-      ;; serve UDP error: *net.OpError read udp 127.0.0.1:5354: use of closed
-      ;; network connection
-      #~(list "-skip" "TestSuite")
-      #:test-subdirs
-      #~(list "../../...")       ;test the whole library
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'prune-tests
-            (lambda* (#:key unpack-path #:allow-other-keys)
-              (with-directory-excursion (string-append "src/" unpack-path)
-                ;; Requires working DNS.
-                (substitute* "pkg/services/dns/dns_test.go"
-                  (("Should pass DNS requests to default system DNS.*" all)
-                   (string-append all "\n" "ginkgo.Skip(\"No network.\");"))
-                  (("\"redhat.com\",")
-                   "\"localhost\",")
-                  (("\"52.200.142.250\"")
-                   "\"127.0.0.1\""))))))))
+     (substitute-keyword-arguments arguments
+       ((#:install-source? _ #t) #f)
+       ((#:skip-build? _ #t) #f)
+       ((#:tests? _ #t) #f)
+       ((#:phases _ '%standard-phases)
+        #~(modify-phases %standard-phases
+            ;; Build binary outputs are taken from project's Makefile.
+            (replace 'build
+              (lambda arguments
+                (for-each
+                 (lambda (cmd)
+                   (apply (assoc-ref %standard-phases 'build)
+                          `(,@arguments #:import-path ,cmd)))
+                 (list "github.com/containers/gvisor-tap-vsock/cmd/gvproxy"
+                       "github.com/containers/gvisor-tap-vsock/cmd/qemu-wrapper"
+                       "github.com/containers/gvisor-tap-vsock/cmd/vm"))))
+            (add-after 'install 'fix-bin-name
+              (lambda _
+                (rename-file (string-append #$output "/bin/vm")
+                             (string-append #$output "/bin/gvforwarder"))))))))
     (native-inputs
-     (list go-github-com-apparentlymart-go-cidr
-           go-github-com-containers-winquit
-           go-github-com-coreos-stream-metadata-go
-           go-github-com-dustin-go-humanize
-           go-github-com-foxcpp-go-mockdns
-           go-github-com-google-gopacket
-           go-github-com-inetaf-tcpproxy
-           go-github-com-insomniacslk-dhcp
-           ;; go-github-com-linuxkit-virtsock  ;Windows only
-           go-github-com-mdlayher-vsock
-           ;; go-github-com-microsoft-go-winio ;Windows only
-           go-github-com-miekg-dns
-           go-github-com-onsi-ginkgo
-           go-github-com-onsi-gomega
-           go-github-com-opencontainers-go-digest
-           go-github-com-sirupsen-logrus
-           go-github-com-songgao-packets
-           go-github-com-songgao-water
-           go-github-com-stretchr-testify
-           go-github-com-vishvananda-netlink
-           go-golang-org-x-crypto
-           go-golang-org-x-mod
-           go-golang-org-x-sync
-           go-golang-org-x-sys
-           go-gopkg-in-yaml-v3
-           go-gvisor-dev-gvisor))
-    (home-page "https://github.com/containers/gvisor-tap-vsock")
-    (synopsis "Network stack for virtualization based on gVisor")
-    (description "This package provides a replacement for @code{libslirp} and
-@code{VPNKit}, written in pure Go.  It is based on the network stack of gVisor
-and brings a configurable DNS server and dynamic port forwarding.
-
-It can be used with QEMU, Hyperkit, Hyper-V and User-Mode Linux.
-
-The binary is called @command{gvproxy}.")
-    (license license:asl2.0)))
+     (package-propagated-inputs go-github-com-containers-gvisor-tap-vsock))
+    (propagated-inputs '())
+    (inputs '())))
 
 (define-public catatonit
   (package
@@ -885,7 +1187,7 @@ being rootless and not requiring any daemon to be running.")
 (define-public buildah
   (package
     (name "buildah")
-    (version "1.43.0")
+    (version "1.43.1")
     (source
      (origin
        (method git-fetch)
@@ -893,7 +1195,7 @@ being rootless and not requiring any daemon to be running.")
              (url "https://github.com/containers/buildah")
              (commit (string-append "v" version))))
        (sha256
-        (base32 "0pwdd0mxhxy530c2sbsz0rnnb1jyl41rvnqn9ywfgb6lz5f4ja2a"))
+        (base32 "00x4ja5n49jmkmiv54mmkihks9pnjnna7s7py57in6pc9g85xj2y"))
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (arguments

gnu/packages/coreboot.scm

@@ -127,6 +127,76 @@ formats:
 It also comes with example files generated by bincfg.")
     (license license:gpl3+)))
 
+(define-public bucts
+  (package
+    (name "bucts")
+    (version %coreboot-version)
+    (source %coreboot-origin)
+    (build-system gnu-build-system)
+    (arguments
+     (list
+      #:tests? #f ;no tests
+      #:make-flags #~(list (string-append "CC=" #$(cc-for-target)))
+      #:phases #~(modify-phases %standard-phases
+                   (delete 'configure) ;no configure script
+                   (add-after 'unpack 'enter-source
+                     (lambda _
+                       (chdir "util/bucts")))
+                   (add-after 'enter-source 'set-version
+                     (lambda _
+                       (substitute* "Makefile"
+                         (("^VERSION:=*")
+                          #$(string-append "VERSION:=" version)))))
+                   ;; no install target
+                   (replace 'install
+                     (lambda _
+                       (let ((bin (string-append #$output "/bin"))
+                             (doc (string-append #$output "/share/doc/bucts/"))
+                             (licenses (string-append #$output
+                                        "/share/licenses/bucts/")))
+                         (install-file "bucts" bin)
+                         (install-file "readme.md" doc)
+                         (install-file "../../COPYING" licenses)))))))
+    (inputs (list pciutils))
+    (home-page "https://coreboot.org")
+    (synopsis "Tool to swap the BIOS bootblock and backup bootblock on the
+Intel I945 chipsets")
+    (description
+     "The @command{bucts} command can flip a bit in the BUC.TS register of the
+Intel I945 chipsets and show the register status.  When the bit is set, it
+swaps the bootblock location.  Because the bootblock region is often set
+read-only by the default BIOS, this enables to bypass that restriction and is
+used as part of a procedure to replace the nonfree BIOS with free software on
+various computers (Lenovo X60, X60s, X60T, T60, probably more).")
+    (license license:gpl2)))
+
+(define-public ectool
+  (package
+    (name "ectool")
+    (version %coreboot-version)
+    (source %coreboot-origin)
+    (build-system gnu-build-system)
+    (arguments
+     (list
+      #:tests? #f ; no test suite
+      #:make-flags
+      #~(list (string-append "CC=" #$(cc-for-target))
+              "INSTALL=install"
+              (string-append "PREFIX=" #$output))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'chdir
+            (lambda _
+              (chdir "util/ectool")))
+          (delete 'configure)))) ; no configure script
+    (home-page "https://doc.coreboot.org/util.html")
+    (synopsis "Tool to dump and modify @acronym{EC, Embedded Controller} RAM
+on computers such as laptops")
+    (description "This package provides @command{ectool}, a program to dump
+and modify the contents of @acronym{EC, Embedded Controller} RAM
+on mobile computers.")
+    (license license:gpl2)))
+
 (define-public ifdtool
   (package
     (name "ifdtool")

gnu/packages/cpp.scm

@@ -28,7 +28,7 @@
 ;;; Copyright © 2022-2024 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2022 muradm <mail@muradm.net>
 ;;; Copyright © 2022 Attila Lendvai <attila@lendvai.name>
-;;; Copyright © 2022 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2022, 2026 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2022-2025 David Elsing <david.elsing@posteo.net>
 ;;; Copyright © 2022-2024 Zheng Junjie <873216071@qq.com>
 ;;; Copyright © 2022-2024, 2026 Maxim Cournoyer <maxim@guixotic.coop>
@@ -52,6 +52,7 @@
 ;;; Copyright © 2025 Philippe Swartvagher <phil.swart@gmx.fr>
 ;;; Copyright © 2025 Murilo <murilo@disroot.org>
 ;;; Copyright © 2026 Justin Veilleux <terramorpha@cock.li>
+;;; Copyright © 2026 Daniel Littlewood <dan@danielittlewood.xyz>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -78,7 +79,6 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system scons)
   #:use-module (guix modules)
@@ -133,6 +133,7 @@
   #:use-module (gnu packages sdl)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages tex)
+  #:use-module (gnu packages texinfo)
   #:use-module (gnu packages web)
   #:use-module (gnu packages webkit)
   #:use-module (gnu packages xdisorg)
@@ -935,6 +936,85 @@ inspired by the @url{https://github.com/gruns/icecream, Python library} of the
 same name.")
     (license license:expat)))
 
+(define-public tinyformat
+  (package
+    (name "tinyformat")
+    (version "2.3.0")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                     (url "https://github.com/c42f/tinyformat")
+                     (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "0j8bxrg7i4rn98iqpfh03krshgcbwh8hq8nm0p3sfdqpira3vi3y"))))
+    (build-system cmake-build-system)
+    (arguments
+     (list #:phases
+           #~(modify-phases %standard-phases
+               (replace 'install
+                 (lambda _
+                   (install-file "../source/tinyformat.h"
+                                 (string-append #$output "/include")))))))
+    (home-page "https://github.com/c42f/tinyformat")
+    (synopsis "Minimal, type-safe printf replacement library for C++")
+    (description "@code{tinyformat} is a type-safe @code{printf} replacement
+library in a single C++ header file.  Design goals include:
+
+@itemize
+@item Type-safety and extensibility for user defined types
+@item C99 @code{printf} compatibility, to the extent possible using
+@code{std::ostream}
+@item POSIX extension for positional arguments
+@item Simplicity and minimalism; a single header file to include and
+distribute with your projects
+@item Augment rather than replace the standard stream formatting mechanism
+@item C++98 support, with optional C++11 niceties
+@end itemize")
+    (license license:boost1.0)))
+
+(define-public span
+  (let ((commit "836dc6a0efd9849cb194e88e4aa2387436bb079b")
+        (revision "0"))
+    (package
+      (name "span")
+      (version (git-version "0.1.0" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                       (url "https://github.com/tcbrindle/span")
+                       (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "1v3x1mj4if8jrr7cmrcbhv8n8ygla0liqb0dic6g6ji7px2pr6jf"))
+                (snippet
+                 #~(delete-file "test/catch.hpp"))))
+      (build-system cmake-build-system)
+      (arguments
+       (list #:phases
+             #~(modify-phases %standard-phases
+                 (add-after 'unpack 'patch-catch2
+                   (lambda _
+                     ;; Use catch2 from Guix.
+                     (substitute* (find-files "test" "\\.cpp$")
+                       (("#include \"catch.hpp\"")
+                        "#include <catch2/catch.hpp>"))))
+                 (replace 'install
+                   (lambda _
+                     (install-file "../source/include/tcb/span.hpp"
+                                   (string-append #$output "/include")))))))
+      (native-inputs
+       (list catch2))
+      (home-page "https://github.com/tcbrindle/span")
+      (synopsis "C++20's @code{std::span} shim for older compilers")
+      (description "This package provides a single-header implementation of
+C++20's @code{std::span}, conforming to the C++20 committee draft.  It is
+compatible with C++11, but will use newer language features if they are
+available.")
+      (license license:boost1.0))))
+
 (define-public google-highway
   (package
     (name "google-highway")
@@ -1671,6 +1751,38 @@ maintained anymore.")
 concurrent queue for C++11.")
     (license license:bsd-2)))
 
+(define-public ringbuffer
+  (package
+    (name "ringbuffer")
+    (version "0.9.0")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/JohannesLorenz/ringbuffer")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1c57hj6zyvcjpcbwrq8c1hj5brk1bnh69ayd88ny1p0gx031sjpk"))))
+    (build-system cmake-build-system)
+    (arguments
+     (list #:configure-flags
+           #~(list "-DCMAKE_CXX_FLAGS=-Wno-error=array-bounds"
+                   (string-append "-DINSTALL_LIB_DIR=" #$output "/lib"))
+           #:phases
+           #~(modify-phases %standard-phases
+               (add-after 'install 'install-export-header
+                 (lambda _
+                   (install-file "src/lib/ringbuffer_export.h"
+                                 (string-append #$output
+                                                "/include/ringbuffer")))))))
+    (home-page "https://github.com/JohannesLorenz/ringbuffer")
+    (synopsis "Lock-free multi-reader ringbuffer")
+    (description
+     "@code{ringbuffer} is a library containing a ringbuffer.  It is lock-free
+(using atomics only), and allows multiple readers, but only one writer.")
+    (license license:gpl3+)))
+
 (define-public spscqueue
   (package
     (name "spscqueue")
@@ -1904,8 +2016,7 @@ using the string similarity calculations from FuzzyWuzzy.")
           (add-after 'unpack 'fix-pytest-config
             (lambda _
               (substitute* "pyproject.toml"
-                ((" \"pytest-cov\", ") "")
-                ((" --cov-fail-under=90 --cov=cpplint") "")))))))
+                (("\"pytest-cov\", ") "")))))))
     (native-inputs
      (list python-pytest
            python-pytest-timeout
@@ -3192,8 +3303,7 @@ pointers, containers, compiler building blocks, etc.")
     (native-inputs
      (list build))
     (inputs
-     `(("libcutl" ,libcutl)
-       ("libxerces-c" ,xerces-c)))
+     (list libcutl xerces-c))
     (synopsis "XSD Front-end")
     (description "@code{libxsd-frontend} is a compiler frontend for the W3C
 XML Schema definition language.  It includes a parser, semantic graph types
@@ -3668,6 +3778,39 @@ computing Fast Fourier transformations.  It supports multidimensional arrays,
 different floating point sizes and complex transformations.")
       (license license:bsd-3))))
 
+(define-public libbinio
+  ;; The latest tagged version does not support CMake build.  This commit has
+  ;; builds with CMake and has updated CMake version support.
+  (let ((commit "e88dad086265e179ab6aef7f479e19f3917c7a98")
+        (revision "0"))
+    (package
+      (name "libbinio")
+      (version (git-version "1.5" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/adplug/libbinio")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "0rb33jl6gpxb88zymzl996m43b7r6wyw4lq0ib3626kna3baqnha"))))
+      (native-inputs
+       (list autoconf automake libtool texinfo))
+      (build-system cmake-build-system)
+      (arguments
+       (list #:tests? #f ;no tests
+             #:configure-flags
+             #~(list "-DBUILD_SHARED_LIBS=ON")))
+      (home-page "http://adplug.github.io/libbinio/")
+      (synopsis "Binary I/O stream class library")
+      (description
+       "This binary I/O stream class library presents a platform-independent
+way to access binary data streams in C++.  The library is hardware independent
+in the form that it transparently converts between the different forms of
+machine-internal binary data representation.")
+      (license license:lgpl2.1+))))
+
 (define-public priocpp
   ;; Latest release is from 2022-08-14.
   (let ((commit "ea15402adcd0d9191dc29ca6f7e4dd0bff67b9b5")
@@ -4494,6 +4637,47 @@ meta data function.")
     ;; or the CECILL-C license:
     (license (list license:lgpl3 license:cecill-c))))
 
+(define-public tcbrindle-span
+  (let ((commit "836dc6a0efd9849cb194e88e4aa2387436bb079b")
+        (revision "0"))
+    (package
+      (name "tcbrindle-span")
+      (version (git-version "0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/tcbrindle/span")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1v3x1mj4if8jrr7cmrcbhv8n8ygla0liqb0dic6g6ji7px2pr6jf"))
+         (modules '((guix build utils)))
+         ;; Unbundle catch.
+         (snippet
+          '(with-directory-excursion "test"
+             (delete-file "catch.hpp")
+             (substitute* (find-files "." "\\.cpp$")
+               (("\"catch\\.hpp\"") "<catch.hpp>"))))))
+      (build-system cmake-build-system)
+      (native-inputs (list catch-framework))
+      (arguments
+       (list
+        #:phases
+        #~(modify-phases %standard-phases
+            (replace 'install
+              (lambda _
+                (mkdir-p (string-append #$output))
+                (copy-recursively "../source/include"
+                                  (string-append #$output "/include")))))))
+      (home-page "https://github.com/tcbrindle/span")
+      (synopsis "Implementation of C++20's @code{std::span} for older compilers")
+      (description
+       "This package provides a single-header implementation of C++20's
+@code{std::span}, conforming to the C++20 committee draft.  It is compatible
+with C++11, but will use newer language features if they are available.")
+    (license license:boost1.0))))
+
 (define-public tsl-hopscotch-map
   (package
     (name "tsl-hopscotch-map")

gnu/packages/crypto.scm

@@ -105,7 +105,6 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system perl)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix utils)
   #:use-module (srfi srfi-1)

gnu/packages/cups.scm

@@ -62,7 +62,6 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix download)
   #:use-module (guix git-download)

gnu/packages/cybersecurity.scm

@@ -31,7 +31,6 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (gnu packages databases)
   #:use-module (gnu packages check)
   #:use-module (gnu packages cpp)
@@ -112,7 +111,7 @@ Refresh}in-DRAM mitigations effectively and as such can trigger bit flips.")
 (define-public gallia
   (package
     (name "gallia")
-    (version "2.0.2")
+    (version "2.1.1")
     (source
      (origin
        (method git-fetch)
@@ -121,7 +120,7 @@ Refresh}in-DRAM mitigations effectively and as such can trigger bit flips.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1yvjpwpqq6r6glfm4qzb8j91d2gsfy4lvygd9z9pg2j6jvcq6f6s"))))
+        (base32 "04xzh5fi18wrkjs7sqwlv344jf54njvnly042rhxq3x5jrvpvkdw"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -133,25 +132,16 @@ Refresh}in-DRAM mitigations effectively and as such can trigger bit flips.")
       #:test-flags #~(list "tests/pytest")))
     (native-inputs
      (list python-poetry-core
-           python-pygit2
            python-pytest
            python-pytest-asyncio))
     (inputs
-     (list python-aiofiles
-           python-aiosqlite
+     (list python-aiosqlite
            python-argcomplete
            python-boltons
-           python-can
-           python-construct
-           python-exitcode
-           python-httpx
-           python-more-itertools
-           python-msgspec
            python-platformdirs
-           python-psutil
            python-pydantic
-           python-pygit2
            python-tabulate
+           python-wcwidth
            python-zstandard))
     (home-page "https://github.com/Fraunhofer-AISEC/gallia")
     (synopsis "Extendable Pentesting Framework")

gnu/packages/databases.scm

@@ -71,6 +71,7 @@
 ;;; Copyright © 2026 Spencer King <spencer.king@wustl.edu>
 ;;; Copyright © 2026 Peter Polidoro <peter@polidoro.io>
 ;;; Copyright © 2026 Josep Bigorra <jjbigorra@gmail.com>
+;;; Copyright © 2026 Daniel Littlewood <dan@danielittlewood.xyz>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -204,7 +205,6 @@
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system ruby)
   #:use-module (guix build-system cmake)
@@ -1060,6 +1060,31 @@ auto-completion and syntax highlighting.")
 \"special\", or \"backslash commands\") on PostgreSQL.")
     (license license:bsd-3)))
 
+(define-public python-sqlite-anyio
+  (package
+    (name "python-sqlite-anyio")
+    (version "0.2.8")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/davidbrochart/sqlite-anyio")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "075fnrrwzn9xc2clkcsyfycjc870khcwnpdg4g726qwl44pfzy2a"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:build-backend "poetry.core.masonry.api")) ;XXX: python-uv-build is required
+    (propagated-inputs (list python-anyio python-typing-extensions))
+    (native-inputs (list python-poetry-core python-pytest))
+    (home-page "https://github.com/davidbrochart/sqlite-anyio")
+    (synopsis "Asynchronous client for SQLite using AnyIO")
+    (description "This package provides an asynchronous client for SQLite
+using @code{AnyIO}.")
+    (license license:expat)))
+
 (define-public python-sqlitedict
   (package
     (name "python-sqlitedict")
@@ -1165,73 +1190,70 @@ auto-completion and syntax highlighting.")
     (name "mysql")
     (version "5.7.33")
     (source (origin
-             (method url-fetch)
-             (uri (list (string-append
+              (method url-fetch)
+              (uri (list (string-append
                           "https://dev.mysql.com/get/Downloads/MySQL-"
                           (version-major+minor version) "/"
                           name "-" version ".tar.gz")
-                        (string-append
+                         (string-append
                           "https://downloads.mysql.com/archives/get/file/"
                           name "-" version ".tar.gz")))
-             (sha256
-              (base32
-               "1bb343mf7n0qg2qz497gxjsqprygrjz1q1pbz76hgqxnsy08sfxd"))))
+              (sha256
+               (base32
+                "1bb343mf7n0qg2qz497gxjsqprygrjz1q1pbz76hgqxnsy08sfxd"))))
     (build-system cmake-build-system)
     (arguments
-     `(#:configure-flags
-       '("-DBUILD_CONFIG=mysql_release"
-         "-DWITH_SSL=system"
-         "-DWITH_ZLIB=system"
-         "-DDEFAULT_CHARSET=utf8"
-         "-DDEFAULT_COLLATION=utf8_general_ci"
-         "-DMYSQL_DATADIR=/var/lib/mysql"
-         "-DMYSQL_UNIX_ADDR=/run/mysqld/mysqld.sock"
-         "-DINSTALL_INFODIR=share/mysql/docs"
-         "-DINSTALL_MANDIR=share/man"
-         "-DINSTALL_PLUGINDIR=lib/mysql/plugin"
-         "-DINSTALL_SCRIPTDIR=bin"
-         "-DINSTALL_INCLUDEDIR=include/mysql"
-         "-DINSTALL_DOCREADMEDIR=share/mysql/docs"
-         "-DINSTALL_SUPPORTFILESDIR=share/mysql"
-         "-DINSTALL_MYSQLSHAREDIR=share/mysql"
-         "-DINSTALL_DOCDIR=share/mysql/docs"
-         "-DINSTALL_SHAREDIR=share/mysql"
-         ;; Get rid of test data.
-         "-DINSTALL_MYSQLTESTDIR="
-         "-DINSTALL_SQLBENCHDIR=")
-       #:phases (modify-phases %standard-phases
-                  (add-after
-                   'install 'remove-extra-binaries
-                   (lambda* (#:key outputs #:allow-other-keys)
-                     (let ((out (assoc-ref outputs "out")))
-                       ;; Remove the 3 *_embedded files, which weigh in at
-                       ;; 14 MiB each.
-                       (for-each delete-file
-                                 (find-files (string-append out "/bin")
-                                             "_embedded$"))
-                       #t)))
-                  (add-after
-                   'install 'wrap-mysql_helpers
-                   (lambda* (#:key inputs outputs #:allow-other-keys)
-                     (let* ((out (assoc-ref outputs "out"))
-                            (bin (string-append out "/bin"))
-                            (awk (assoc-ref inputs "gawk"))
-                            (coreutils (assoc-ref inputs "coreutils"))
-                            (grep (assoc-ref inputs "grep"))
-                            (ps (assoc-ref inputs "procps"))
-                            (sed (assoc-ref inputs "sed")))
-                       (wrap-program (string-append bin "/mysql_config")
-                         `("PATH" ":" suffix
-                           (,(string-append awk "/bin")
-                            ,(string-append coreutils "/bin")
-                            ,(string-append sed "/bin"))))
-                       (wrap-program (string-append bin "/mysqld_safe")
-                         `("PATH" ":" suffix
-                           (,(string-append awk "/bin")
-                            ,(string-append coreutils "/bin")
-                            ,(string-append grep "/bin")
-                            ,(string-append ps "/bin")
-                            ,(string-append sed "/bin"))))))))))
+     (list
+      #:configure-flags
+      #~(list "-DBUILD_CONFIG=mysql_release"
+              "-DWITH_SSL=system"
+              "-DWITH_ZLIB=system"
+              "-DDEFAULT_CHARSET=utf8"
+              "-DDEFAULT_COLLATION=utf8_general_ci"
+              "-DMYSQL_DATADIR=/var/lib/mysql"
+              "-DMYSQL_UNIX_ADDR=/run/mysqld/mysqld.sock"
+              "-DINSTALL_INFODIR=share/mysql/docs"
+              "-DINSTALL_MANDIR=share/man"
+              "-DINSTALL_PLUGINDIR=lib/mysql/plugin"
+              "-DINSTALL_SCRIPTDIR=bin"
+              "-DINSTALL_INCLUDEDIR=include/mysql"
+              "-DINSTALL_DOCREADMEDIR=share/mysql/docs"
+              "-DINSTALL_SUPPORTFILESDIR=share/mysql"
+              "-DINSTALL_MYSQLSHAREDIR=share/mysql"
+              "-DINSTALL_DOCDIR=share/mysql/docs"
+              "-DINSTALL_SHAREDIR=share/mysql"
+              ;; Get rid of test data.
+              "-DINSTALL_MYSQLTESTDIR="
+              "-DINSTALL_SQLBENCHDIR=")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'install 'remove-extra-binaries
+            (lambda _
+              ;; Remove the 3 *_embedded files, which weigh in at
+              ;; 14 MiB each.
+              (for-each delete-file
+                        (find-files (string-append #$output "/bin")
+                                    "_embedded$"))))
+          (add-after 'install 'wrap-mysql_helpers
+            (lambda* (#:key inputs outputs #:allow-other-keys)
+              (let ((bin (string-append #$output "/bin"))
+                    (gawk (search-input-file inputs "bin/gawk"))
+                    (coreutils (search-input-file inputs "bin/ls"))
+                    (grep (search-input-file inputs "bin/grep"))
+                    (ps (search-input-file inputs "bin/ps"))
+                    (sed (search-input-file inputs "bin/sed")))
+                (wrap-program (search-input-file outputs "bin/mysql_config")
+                  `("PATH" suffix
+                    ,(list (dirname gawk)
+                           (dirname coreutils)
+                           (dirname sed))))
+                (wrap-program (search-input-file outputs "bin/mysqld_safe")
+                  `("PATH" suffix
+                    ,(list (dirname gawk)
+                           (dirname coreutils)
+                           (dirname grep)
+                           (dirname ps)
+                           (dirname sed))))))))))
     (native-inputs
      (list bison perl pkg-config))
     (inputs
@@ -1245,7 +1267,7 @@ auto-completion and syntax highlighting.")
            ncurses
            openssl-1.1
            procps
-           rpcsvc-proto ; rpcgen
+           rpcsvc-proto                 ; rpcgen
            sed
            zlib))
     (home-page "https://www.mysql.com/")
@@ -1256,6 +1278,98 @@ management system that supports the standardized Structured Query
 Language.")
     (license license:gpl2)))
 
+(define-public mysql-connector-python
+  (package
+    (name "mysql-connector-python")
+    (version "8.3.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/mysql/mysql-connector-python")
+              (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "18jvpnnwmfrn961rvqmsygp7dw3spf3swhxhal4hhj5hqddckj5f"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      ;; tests: 1371 passed
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'compatibility
+            (lambda _
+              (substitute* "src/mysql_capi.c"
+                (("res = mysql_options\\(&self->session, MYSQL_OPT_LOAD_DATA_LOCAL_DIR.*")
+                 "res = 0;")
+                (("mysql_options\\(&self->session, MYSQL_OPT_LOAD_DATA_LOCAL_DIR.*")
+                 "")
+                (("mysql_options\\(&self->session, MYSQL_OPT_TLS_CIPHERSUITES.*")
+                 "")
+                ;; The C API does not have mysql_bind_param, so we produce an
+                ;; error here.
+                (("status = mysql_bind_param.*") "status = 1;")
+                (("#include \"mysql_capi_conversion\\.h\"" all)
+                 (string-append all "\n" "#include <stdbool.h>")))))
+          (add-after 'unpack 'chdir
+            (lambda _
+              (chdir "mysql-connector-python")))
+          (add-before 'build 'prepare-build
+            (lambda _
+              (setenv "MYSQL_CAPI" #$(this-package-input "mysql"))))
+          (replace 'check
+            (lambda* (#:key tests? #:allow-other-keys)
+              (when tests?
+                ;; Some of these tests might be failing due to the build
+                ;; container's restrictions, others are due to the version
+                ;; mismatch.
+                (substitute* "tests/cext/test_cext_api.py"
+                  (("def test_change_user") "def _do_not_test_change_user")
+                  (("def test_get_character_set_info")
+                   "def _do_not_test_get_character_set_info"))
+                (substitute* "tests/test_bugs.py"
+                  (("def test_change_user") "def _do_not_test_change_user")
+                  (("def test_lost_connection") "def _do_not_test_lost_connection")
+                  (("def test_kill_query") "def _do_not_test_kill_query")
+                  ;; These all fail because of expired certificates.
+                  (("def test_cext_verify_server_certificate")
+                   "def _do_not_test_cext_verify_server_certificate")
+                  (("def test_pure_verify_server_certificate")
+                   "def _do_not_test_pure_verify_server_certificate")
+                  (("def test_verify_server_name_cext_cnx")
+                   "def _do_not_test_verify_server_name_cext_cnx")
+                  (("def test_verify_server_name_pure_cnx")
+                   "def _do_not_test_verify_server_name_pure_cnx"))
+                (substitute* '("tests/test_connection.py"
+                               "tests/test_aio_connection.py")
+                  (("def test_allow_local_infile_in_path")
+                   "def _do_not_test_allow_local_infile_in_path")
+                  ;; This fails because of expired certificates.
+                  (("def test_connect_with_unix_socket")
+                   "def _do_not_test_connect_with_unix_socket"))
+                (substitute* "tests/test_constants.py"
+                  (("def test_deprecated")
+                   "def _do_not_test_deprecated"))
+                (mkdir-p "/tmp/datadir")
+                (invoke "python3" "unittests.py"
+                        "--verbosity=3"
+                        (string-append "--with-mysql=" #$(this-package-input "mysql"))
+                        "--keep"
+                        "--mysql-topdir=/tmp/datadir"
+                        "--unix-socket=/tmp/datadir")))))))
+    (propagated-inputs (list python-protobuf))
+    (inputs (list mysql protobuf-3.20 openssl-1.1 zlib))
+    (native-inputs (list python-setuptools))
+    (home-page "https://dev.mysql.com/doc/connector-python/en/index.html")
+    (synopsis "MySQL driver written in Python")
+    (description "MySQL Connector/Python enables Python programs to access
+MySQL databases, using an API that is compliant with the Python Database API
+Specification v2.0 (PEP 249).")
+    (license license:gpl2)))
+
+(define-deprecated-package python-mysql-connector-python
+  mysql-connector-python)
+
 (define-public mariadb
   (package
     (name "mariadb")
@@ -4159,8 +4273,8 @@ programmatically or as a standalone CLI application.")
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (inputs
-     `(("libcrypto" ,openssl)
-       ("libtcl8.6" ,tcl))) ; required for running the tests
+     (list openssl
+           tcl))                        ;for tests
     (native-inputs
      (list tcl))
     (arguments
@@ -4715,33 +4829,24 @@ PickleShare.")
 (define-public python-apsw
   (package
     (name "python-apsw")
-    (version "3.46.0.0")
-    ;; The compressed release has fetching functionality disabled.
+    (version "3.50.4.0")
     (source
      (origin
-       (method url-fetch)
-       (uri (string-append
-             "https://github.com/rogerbinns/apsw/releases/download/"
-             version "/apsw-" version ".zip"))
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/rogerbinns/apsw")
+              (commit version)))
+       (file-name (git-file-name name version))
        (sha256
-        (base32
-         "10yfbasi4mq63g0svyl1h49ylwn9znjylq78id16dzxzk9q9ipdx"))))
+        (base32 "0r9awjgpl9cmqz5xd4zbqrpiv0rv5c36a18jkqnsfky6n6sgr424"))))
     (build-system pyproject-build-system)
-    (native-inputs
-     (list unzip python-setuptools python-wheel))
-    (inputs (list sqlite-next))         ;SQLite 3.45.1 required.
     (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'build 'build-extensions
-            (lambda _
-              (invoke "python" "setup.py" "build" "--enable-all-extensions"
-                      "--enable=load_extension")))
-          (add-after 'build 'build-test-helper
-            (lambda _
-              (invoke "gcc" "-fPIC" "-shared" "-o" "./testextension.sqlext"
-                      "-I." "-Isqlite3" "src/testextension.c"))))))
+     (list #:test-backend #~'custom
+           #:test-flags #~(list "-m" "apsw.tests")))
+    (native-inputs
+     (list python-setuptools))
+    (inputs
+     (list sqlite-next))         ;SQLite 3.45.1 required.
     (home-page "https://github.com/rogerbinns/apsw/")
     (synopsis "Another Python SQLite Wrapper")
     (description
@@ -5718,7 +5823,6 @@ __version_tuple__ = version_tuple = (~a)~%" version version-tuple))))))
            pkg-config
            python-cython
            python-pytest
-           python-pytest-runner
            python-setuptools-scm
            python-setuptools))
     (outputs '("out"))
@@ -6315,7 +6419,7 @@ mechanism of @code{dogpile}.")
 (define-public datasette
   (package
     (name "datasette")
-    (version "1.0a19")
+    (version "1.0a26")
     (source
      (origin
        (method git-fetch)
@@ -6324,23 +6428,20 @@ mechanism of @code{dogpile}.")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0wb73iksrc5vg2lnq3q4vr7yhlzxwr711jfmjdndd0s77996zsfh"))))
+        (base32 "1ra0yfrz9w3jx7ix3dmcsg0g8hjxkz37586g7ijmqshxpzczxfm7"))))
     (build-system pyproject-build-system)
     (arguments
      (list
+      ;; tests: 1720 passed, 9 skipped, 8 xfailed, 13 xpassed, 3 warnings, 120
+      ;; subtests passed
       #:test-flags
-      ;; See https://github.com/simonw/datasette/issues/2048
-      #~(list "-k" (string-append
-                    ;; These contain two unexpected extra items.
-                    "not test_searchable"
-                    " and not test_searchmode")
-              "--ignore=tests/test_black.py"
-              "-n" (number->string (parallel-job-count)))
+      #~(list "--numprocesses" (number->string (min 8 (parallel-job-count)))
+              "--ignore=tests/test_black.py")
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'relax-requirements
             (lambda _
-              (substitute* "setup.py"
+              (substitute* "pyproject.toml"
                 (("\"pip\",") "")))))))
     (propagated-inputs
      (list python-aiofiles
@@ -6355,7 +6456,6 @@ mechanism of @code{dogpile}.")
            python-janus
            python-jinja2
            python-mergedeep
-           python-pint
            python-pluggy
            python-pyyaml
            python-sqlite-utils
@@ -6364,9 +6464,9 @@ mechanism of @code{dogpile}.")
      (list nss-certs-for-test
            python-beautifulsoup4
            python-cogapp
+           python-multipart-form-data-conformance
            python-pytest
-           python-pytest-asyncio-0.26
-           python-pytest-runner
+           python-pytest-asyncio
            python-pytest-timeout
            python-pytest-xdist
            python-setuptools

gnu/packages/datalog.scm

@@ -0,0 +1,113 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2026 Arun Isaac <arunisaac@systemreboot.net>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages datalog)
+  #:use-module (gnu packages bison)
+  #:use-module (gnu packages compression)
+  #:use-module (gnu packages cpp)
+  #:use-module (gnu packages flex)
+  #:use-module (gnu packages libffi)
+  #:use-module (gnu packages ncurses)
+  #:use-module (gnu packages python)
+  #:use-module (gnu packages sqlite)
+  #:use-module (guix build-system cmake)
+  #:use-module (guix gexp)
+  #:use-module (guix git-download)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (guix packages))
+
+(define-public souffle
+  (package
+    (name "souffle")
+    (version "2.5")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                     (url "https://github.com/souffle-lang/souffle")
+                     (commit version)))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1lrw69g02b17vxxz4g7cj8hbmc39wlzl80vl5fwy40a6b9pxwrsj"))
+              (snippet
+               #~(begin
+                   ;; Delete bundled dependencies. souffle also uses a forked
+                   ;; and modified version of json11. We cannot unbundle
+                   ;; that.
+                   (for-each delete-file
+                             (list "licenses/TCBRINDLE SPAN.txt"
+                                   "licenses/TINYFORMAT.txt"
+                                   "src/include/souffle/utility/span.h"
+                                   "src/include/souffle/utility/tinyformat.h"))))))
+    (build-system cmake-build-system)
+    (arguments
+     (list #:configure-flags #~(list "-DSOUFFLE_GIT=OFF"
+                                     (string-append "-DPACKAGE_VERSION="
+                                                    #$version))
+           ;; We disable these tests since they fail with gcc 14. This issue
+           ;; has been reported upstream:
+           ;; https://github.com/souffle-lang/souffle/issues/2576
+           #:test-exclude (string-join
+                           (list "syntactic/cpp_keywords_run_souffle"
+                                 "syntactic/cpp_keywords_c_run_souffle"
+                                 "syntactic/cpp_keywords_compare_std_outputs"
+                                 "syntactic/cpp_keywords_compare_csv"
+                                 "syntactic/cpp_keywords_c_compare_std_outputs"
+                                 "syntactic/cpp_keywords_c_compare_csv")
+                           "|")
+           #:phases
+           #~(modify-phases %standard-phases
+               (add-after 'unpack 'replace-bundled-libraries
+                 (lambda _
+                   ;; Patch souffle to use tinyformat from Guix.
+                   (substitute* (find-files "src" "\\.(cpp|h)$")
+                     (("#include \"souffle/utility/tinyformat.h\"")
+                      "#include <tinyformat.h>"))
+                   ;; Replace span.h with a header that uses span from Guix
+                   ;; and provides the same namespace.
+                   (call-with-output-file "src/include/souffle/utility/span.h"
+                     (lambda (port)
+                       (display "#pragma once
+#include <span.hpp>
+namespace souffle {
+  using tcb::span;
+}
+"
+                                port))))))))
+    (inputs
+     (list libffi
+           ncurses
+           python
+           span
+           sqlite
+           zlib))
+    (native-inputs
+     (list bison
+           flex
+           tinyformat))
+    (home-page "https://souffle-lang.github.io/")
+    (synopsis "Datalog variant")
+    (description "Soufflé is a variant of Datalog for tool designers crafting
+analyses in Horn clauses.  Soufflé synthesizes a native parallel C++ program
+from a logic specification.  The Soufflé language is similar to Datalog (but
+has terms known as records), and is frequently used as a domain-specific
+language for analysis problems.")
+    (license (list license:upl          ; main license
+                   ;; src/include/souffle/profile/htmlJsChartistPlugin.h
+                   ;; src/include/souffle/utility/json11.h
+                   license:expat))))

gnu/packages/dav.scm

@@ -27,7 +27,6 @@
 (define-module (gnu packages dav)
   #:use-module (guix build-system cargo)
   #:use-module (guix build-system gnu)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix download)
   #:use-module (guix gexp)
@@ -143,9 +142,6 @@ CardDAV server with a local folder or file.")
     (build-system pyproject-build-system)
     (native-inputs
      (list python-pytest
-           python-pytest-cov
-           python-pytest-flake8
-           python-pytest-isort
            python-setuptools
            python-waitress
            python-wheel))
@@ -244,7 +240,6 @@ efficient syncing
      (list python-aioresponses
            python-pytest
            python-pytest-asyncio
-           python-pytest-cov
            python-pytest-httpserver
            python-setuptools
            python-setuptools-scm

gnu/packages/debug.scm

@@ -77,7 +77,6 @@
   #:use-module (gnu packages mail)
   #:use-module (gnu packages multiprecision)
   #:use-module (gnu packages ncurses)
-  #:use-module (gnu packages ninja)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages pretty-print)
@@ -263,7 +262,7 @@ simple way to add custom protocol messages.")
 (define-public c-vise
   (package
     (name "c-vise")
-    (version "2.4.0")
+    (version "2.8.0")
     (source
      (origin
        (method git-fetch)
@@ -271,37 +270,53 @@ simple way to add custom protocol messages.")
              (url "https://github.com/marxin/cvise")
              (commit (string-append "v" version))))
        (sha256
-        (base32 "1i2z5q2pcwh1gpdqc24x1a2q5vzwhblzzq021nzwf304di7m18vl"))
+        (base32 "1ynhm1d56r25apgvv0wqbdrhjbwigkwrgw92g2czz4nfx77rjxz2"))
        (file-name (git-file-name name version))))
     (build-system cmake-build-system)
-    (native-inputs
-     (list flex python-pytest python-pytest-flake8))
-    (inputs
-     (list bash-minimal clang llvm unifdef
-           python python-pebble python-psutil python-chardet))
     (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'fix-linkage
-           (lambda _
-            (substitute* "clang_delta/CMakeLists.txt"
-              (("\\$\\{LLVM_LINK_LLVM_DYLIB\\}") "True")
-              (("  LLVM") "  LLVMSupport"))))
-         (add-before 'build 'hardcode-paths
-           (lambda _
-            (substitute* "cvise.py"
-              (("/bin/bash") (which "bash"))
-              (("(.*)# Special case for clang-format" & >)
-               (string-append > "# Special case for unifdef\n"
-                              > "programs['unifdef'] = '" (which "unifdef") "'\n"
-                              &)))))
-         (add-after 'install 'wrap
-           (lambda* (#:key outputs #:allow-other-keys)
-             (let ((out (assoc-ref outputs "out"))
-                   (python-path (getenv "GUIX_PYTHONPATH")))
-               (wrap-program (string-append out "/bin/cvise")
-                 `("PYTHONPATH" ":" prefix (,python-path)))
-               #t))))))
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-linkage
+            (lambda _
+              (substitute* "clang_delta/CMakeLists.txt"
+                (("\\$\\{LLVM_LINK_LLVM_DYLIB\\}")
+                 "True")
+                (("  LLVM")
+                 "  LLVMSupport"))))
+          (add-before 'build 'hardcode-paths
+            (lambda _
+              (substitute* "cvise.py"
+                (("/bin/bash")
+                 (which "bash"))
+                (("(.*)# Special case for clang-format" all blank)
+                 (format #f "~a# Special case for unifdef
+~aprograms['unifdef'] = ~s
+~a"
+                         blank blank (which "unifdef") all)))))
+          (add-after 'install 'wrap
+            (lambda _
+              (let ((python-path (getenv "GUIX_PYTHONPATH")))
+                (wrap-program (string-append #$output "/bin/cvise")
+                  `("PYTHONPATH" ":" prefix
+                    (,(string-join
+                       (filter (lambda (cand)
+                                 (not (string-contains cand "pytest")))
+                               (string-split python-path #\:))
+                       ":"))))))))))
+    (native-inputs
+     (list flex
+           python-pytest
+           python-pytest-flake8))
+    (inputs
+     (list bash-minimal
+           clang
+           llvm
+           unifdef
+           python
+           python-pebble
+           python-psutil
+           python-chardet))
     (home-page "https://github.com/marxin/cvise")
     (synopsis "Reducer for interesting code")
     (description
@@ -978,26 +993,27 @@ engineering.")
 (define-public seer-gdb
   (package
     (name "seer-gdb")
-    (version "1.16")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/epasveer/seer.git")
-                     (commit (string-append "v" version))))
-              (file-name (string-append name "-" version "-checkout"))
-              (sha256
-               (base32
-                "0jdvyg2jab1pvf36pvkyrfsg2wyy8zp1qx0v2ksclgrnr1hja6k6"))))
+    (version "2.7")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/epasveer/seer")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1szfqybqr5z982vian4f0hpsagiqapzys3axwibyjyg5whjswva1"))))
     (build-system qt-build-system)
     (arguments
-     `(#:tests? #f ; Those are strangely manual
-       #:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'chdir
-           (lambda _
-             (chdir "src"))))))
+     (list
+      #:tests? #f                       ;tests are strangely manual
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'chdir
+            (lambda _
+              (chdir "src"))))))
     (inputs
-     (list qtbase-5 qtcharts-5 qtwayland-5))
+     (list gdb qtbase qtcharts qtsvg qtwayland))
     (synopsis "GUI frontend for GDB")
     (description "This package provides a frontend to GDB, the GNU debugger.")
     (home-page "https://github.com/epasveer/seer")
@@ -1037,7 +1053,7 @@ to aid in debugging.")
 (define-public delve
   (package
     (name "delve")
-    (version "1.25.2")
+    (version "1.26.3")
     (source
      (origin
        (method git-fetch)
@@ -1047,7 +1063,7 @@ to aid in debugging.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "1b6vp6m4vjx4wfs1djhpizvz40s563jwld9lgjq82svaiilrmlqa"))
+         "0mf363l7md4193cgrpb6hkhmsgnlnrx44q1bzw3zq0bmjrcg3fj7"))
        (snippet
         #~(begin (use-modules (guix build utils))
                  (delete-file-recursively "vendor")))))
@@ -1065,7 +1081,7 @@ to aid in debugging.")
      (list go-github-com-cilium-ebpf
            go-github-com-cosiner-argv
            go-github-com-creack-pty
-           go-github-com-derekparker-trie
+           go-github-com-derekparker-trie-v3
            go-github-com-go-delve-liner
            go-github-com-google-go-dap
            go-github-com-hashicorp-golang-lru
@@ -1213,7 +1229,7 @@ and input distributions can also be expressed in Fandango.")
                           ;; Shorten paths to sockets in tests.
                           (lambda _ (setenv "TMPDIR" "/tmp"))))
            #:test-target "test"))
-    (native-inputs (list python))      ; for tests
+    (native-inputs (list python python-setuptools)) ; for tests
     (synopsis "Fault injector in userspace")
     (description "Fiu provides CLI utilities and a C library
 to mark points of failure inside your code

gnu/packages/dictionaries.scm

@@ -41,7 +41,6 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system trivial)
   #:use-module (gnu packages)
@@ -49,6 +48,7 @@
   #:use-module (gnu packages base)
   #:use-module (gnu packages bash)
   #:use-module (gnu packages bison)
+  #:use-module (gnu packages build-tools)
   #:use-module (gnu packages check)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages cpp)
@@ -122,58 +122,83 @@ Carnegie Mellon University.")
               "https://github.com/cmusphinx/cmudict/blob/master/LICENSE"))))
 
 (define-public dico
-  (package
-    (name "dico")
-    (version "2.12")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append "mirror://gnu/dico/dico-"
-                                  version ".tar.xz"))
-              (sha256
-               (base32
-                "1xvahrav8aml90qcj4cj3a33y0n7nm1k0ywgks1zy2q91v2qk2vj"))))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:configure-flags #~(list "--disable-static")
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'build 'set-shell-file-name
-            (lambda* (#:key inputs #:allow-other-keys)
-              ;; This code invokes "/bin/sh -c 'm4 -s ...'".
-              (substitute* "grecs/src/grecs-lex.c"
-                (("\"/bin/sh\"")
-                 (string-append "\""
-                                (search-input-file inputs "/bin/sh")
-                                "\"")))))
-          (add-before 'check 'silence-guile
-            (lambda _
-              ;; Guile is too talkative, which disturbs the test
-              ;; infrastructure.  Gag it.
-              (setenv "GUILE_AUTO_COMPILE" "0")
-              (setenv "GUILE_WARN_DEPRECATED" "no"))))))
-    (native-inputs (list groff))
-    (inputs
-     (list m4                           ;used at run time
-           bash-minimal                 ;likewise
-           pcre
-           python-wrapper
-           guile-3.0
-           gsasl
-           readline
-           zlib
-           wordnet
-           libxcrypt                    ;for 'crypt'
-           libltdl))
-    (home-page "https://www.gnu.org.ua/software/dico/")
-    (synopsis "Implementation of DICT server (RFC 2229)")
-    (description
-     "GNU Dico implements a flexible dictionary server and client according to
-RFC 2229 (DICT Server).  It is able to access any database available,
+  (let ((commit "05da4bc9e613834fdb065e38c7181044d8889575")
+        (revision "0"))
+    (package
+      (name "dico")
+      (version (git-version "2.12" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+                (url "https://git.gnu.org.ua/dico.git")
+                (commit commit)
+                (recursive? #t)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1fmr01gpvvb1p6p9ylr67nqx8ymmmkqjhsi9y5zvp2nc32cgxvah"))))
+      (build-system gnu-build-system)
+      (arguments
+       (list
+        #:configure-flags #~(list "--disable-static")
+        #:phases
+        #~(modify-phases %standard-phases
+            (replace 'bootstrap
+              (lambda* (#:key inputs #:allow-other-keys)
+                (substitute* "grecs/bootstrap"
+                  (("/bin/sh")
+                   (which "bash"))
+                  ((" GRECS_GIT_ID=.*")
+                   " GRECS_GIT_ID=v1.0-25-g51b12be\n"))
+                (invoke "perl" "./bootstrap" "--force" "--skip-po")))
+            (add-before 'build 'post-configure
+              (lambda* (#:key inputs #:allow-other-keys)
+                ;; For some reason, this file is missing.
+                (install-file "gnulib/lib/getopt.c"
+                              "xdico/gnu")
+                ;; This code invokes "/bin/sh -c 'm4 -s ...'".
+                (substitute* "grecs/src/grecs-lex.l"
+                  (("\"/bin/sh")
+                   (string-append "\""
+                                  (search-input-file inputs "/bin/sh"))))))
+
+            (add-before 'check 'silence-guile
+              (lambda _
+                ;; Guile is too talkative, which disturbs the test
+                ;; infrastructure.  Gag it.
+                (setenv "GUILE_AUTO_COMPILE" "0")
+                (setenv "GUILE_WARN_DEPRECATED" "no"))))))
+      (native-inputs
+       (list autoconf-2.71
+             automake
+             bison
+             flex
+             gettext-minimal
+             groff
+             libtool
+             perl
+             texinfo))
+      (inputs
+       (list m4                           ;used at run time
+             bash-minimal                 ;likewise
+             pcre
+             python-wrapper
+             guile-3.0
+             gsasl
+             readline
+             zlib
+             wordnet
+             libxcrypt                    ;for 'crypt'
+             libltdl))
+      (home-page "https://www.gnu.org.ua/software/dico/")
+      (synopsis "Implementation of DICT server (RFC 2229)")
+      (description
+       "GNU Dico implements a flexible dictionary server and client according
+to RFC 2229 (DICT Server).  It is able to access any database available,
 regardless of format, thanks to its modular structure.  New modules may be
 written in C, Guile or Python.  Dico also includes a command-line client,
 which may be used to query remote dictionary databases.")
-    (license license:gpl3+)))
+      (license license:gpl3+))))
 
 (define-public libmaa
   (package

gnu/packages/diffoscope.scm

@@ -67,7 +67,6 @@
   #:use-module (gnu packages vim)
   #:use-module (gnu packages web)
   #:use-module (gnu packages xml)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix gexp)
   #:use-module (guix git-download)
@@ -290,14 +289,6 @@ install.")
               (for-each (lambda (file)
                           (chmod file #o755))
                         (find-files #$output "autopkgtest-virt-.*"))))
-          ;; Adjust use of importlib.resources to use python 3.10 compatible
-          ;; syntax, which requires an argument.
-          ;; Drop when switching to python 3.12+.
-          (add-after 'unpack 'adjust-importlib-resources-for-old-python
-            (lambda _
-              (substitute* "reprotest/__init__.py"
-                (("importlib.resources.files\\(\\)")
-                  "importlib.resources.files(package='reprotest')"))))
           (add-after 'unpack 'skip-most-tests
             ;; These tests require functionality not available in the guix
             ;; build environment

gnu/packages/digest.scm

@@ -27,7 +27,6 @@
   #:use-module (guix git-download)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system trivial)
   #:use-module (guix utils)
   #:use-module (gnu packages check)

gnu/packages/disk.scm

@@ -59,7 +59,6 @@
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system scons)
   #:use-module (guix build-system trivial)
@@ -106,7 +105,6 @@
   #:use-module (gnu packages libbsd)
   #:use-module (gnu packages linux)
   #:use-module (gnu packages ncurses)
-  #:use-module (gnu packages ninja)
   #:use-module (gnu packages nss)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages perl-web)
@@ -266,14 +264,14 @@ tmpfs/ramfs filesystems.")
 (define-public parted
   (package
     (name "parted")
-    (version "3.6")
+    (version "3.7")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnu/parted/parted-"
                                   version ".tar.xz"))
               (sha256
                (base32
-                "04p6b4rygrfd1jrskwrx3bn2icajg1mvbfhyc0c9l3ya7kixnhrv"))))
+                "0yzga4cjq3yplqs47dl9714vwc3v3v8nxrj80rdc5wx4c5syb380"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -296,6 +294,7 @@ tmpfs/ramfs filesystems.")
        (,util-linux "lib")))
     (native-inputs
      (list gettext-minimal
+           pkg-config
 
            ;; For the tests.
            e2fsprogs
@@ -310,18 +309,6 @@ tmpfs/ramfs filesystems.")
 tables.  It includes a library and command-line utility.")
     (license license:gpl3+)))
 
-(define-public parted-3.4
-  (package
-    (inherit parted)
-    (version "3.4")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append "mirror://gnu/parted/parted-"
-                                  version ".tar.xz"))
-              (sha256
-               (base32
-                "0hjkv84x1bs2qqyx1fnzjqyyqrhv7kpdbq9bgydmi99d8wi80ag1"))))))
-
 (define-public fdisk
   (package
     (name "fdisk")
@@ -1237,16 +1224,25 @@ and its highly optimized now for efficient performance.")
   (package
     (name "volume-key")
     (version "0.3.12")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append "https://releases.pagure.org/volume_key/volume_key-"
-                                  version ".tar.xz"))
-              (sha256
-               (base32
-                "16rhfz6sjwxlmss1plb2wv2i3jq6wza02rmz1d2jrlnsq67p98vc"))))
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://pagure.io/volume_key")
+              (commit (string-append "volume_key-" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0zadzbh26ckk263w02d02r2x3mry2kxbybkhwwaxwpv6jsrm7xr6"))))
     (build-system gnu-build-system)
     (native-inputs
-     (list pkg-config swig-4.0 python-3))           ; used to generate the Python bindings
+     (list autoconf
+           automake
+           gettext-minimal
+           libtool
+           pkg-config
+           python       ; used to generate the Python bindings
+           python-setuptools
+           swig))
     (inputs
      (append
       (cons cryptsetup-minimal (libcryptsetup-propagated-inputs))
@@ -1256,15 +1252,21 @@ and its highly optimized now for efficient performance.")
             glib
             gpgme)))
     (arguments
-     `(#:tests? #f ; not sure how tests are supposed to pass, even when run manually
-       #:phases
-       (modify-phases %standard-phases
-         (add-before 'configure 'patch-python.h-path
-           (lambda* (#:key inputs #:allow-other-keys)
-             (let ((python (assoc-ref inputs "python")))
-               (substitute* "Makefile.in"
-                 (("/usr/include/python") (string-append python "/include/python")))
-               #t))))))
+     (list
+      #:tests? #f ; not sure how tests are supposed to pass, even when run manually
+      #:configure-flags
+      #~(list "--without-python"
+              (string-append "--with-gpgme-prefix="
+                             #$(this-package-input "gpgme")))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'configure 'set-python-paths
+            (lambda* (#:key inputs #:allow-other-keys)
+              (let ((python #$(this-package-native-input "python")))
+                (setenv "PYTHON3"
+                        (string-append python "/bin/python3"))
+                (setenv "PYTHON3_CONFIG"
+                        (string-append python "/bin/python3-config"))))))))
     (home-page "https://pagure.io/volume_key")
     (synopsis "Manipulate storage volume encryption keys")
     (description

gnu/packages/distributed.scm

@@ -46,12 +46,13 @@
   #:use-module (gnu packages perl)
   #:use-module (gnu packages sqlite)
   #:use-module (gnu packages python)
+  #:use-module (gnu packages python-build)
   #:use-module (gnu packages python-xyz))
 
 (define-public boinc-client
   (package
     (name "boinc-client")
-    (version "8.2.9")
+    (version "8.2.12")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -62,7 +63,7 @@
               (file-name (git-file-name "boinc" version))
               (sha256
                (base32
-                "0ik9423ii6kal29jdn907pxy8w86zpi8n158qx1gcsh8lsaif1v5"))))
+                "0531n0yij1gh06xy6plwivbpmhqfq15jizg3rdgri40nz41rzbgr"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -108,7 +109,11 @@ resources).  It supports virtualized, parallel, and GPU-based applications.")
                                      "--with-gtk"
                                      "--with-auth")))
     (native-inputs
-     (list pkg-config autoconf automake which))
+     (list autoconf
+           automake
+           pkg-config
+           python-setuptools
+           which))
     (inputs
      (list avahi
            gtk+

gnu/packages/django.scm

@@ -37,7 +37,6 @@
   #:use-module (guix git-download)
   #:use-module (guix gexp)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix deprecation)
   #:use-module (guix search-paths)
   #:use-module (guix utils)
@@ -201,13 +200,13 @@ your project into different processes.")
 (define-public python-django
   (package
     (name "python-django")
-    (version "5.2.11")
+    (version "5.2.13")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "django" version))
        (sha256
-        (base32 "1lq2dynfw6jmvzrzgfrlij2qnxcksaxgnrfr0pj3bvmrv0m2jbbz"))))
+        (base32 "1i1vlffzhwbzp6r6y8ycvwklc45diy4c6i897z379l48a7dqj5d3"))))
     (build-system pyproject-build-system)
     (arguments
      '(#:test-flags
@@ -298,22 +297,6 @@ to the @dfn{don't repeat yourself} (DRY) principle.")
                       ;; This CVE is fixed in 4.1.9.
                       "CVE-2023-31047"))))))
 
-(define-public python-django-4
-  (package
-    (inherit python-django)
-    (name "python-django-4")
-    (version "4.2.28")
-    (source
-      (origin
-        (method url-fetch)
-        (uri (pypi-uri "django" version))
-        (sha256
-         (base32 "1znc2q1m9p2kxz1rkfkh2hg2sx6i3aqv72zsraad7bci364cvfd4"))))
-    (arguments
-     (substitute-keyword-arguments arguments
-       ((#:phases phases)
-        #~(modify-phases #$phases (delete 'delete-sitecustomize)))))))
-
 (define-public python-django-cache-url
   (package
     (name "python-django-cache-url")
@@ -329,7 +312,7 @@ to the @dfn{don't repeat yourself} (DRY) principle.")
         (base32 "1a5vd07wrnfbclvf6pz9p8ag9kdd1453lsl9q0bkyc45hq2xqd2a"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-django python-pytest python-pytest-cov python-setuptools))
+     (list python-django python-pytest python-setuptools))
     (home-page "https://github.com/epicserve/django-cache-url")
     (synopsis "Configure Django cache settings from URLs")
     (description
@@ -420,7 +403,6 @@ and adapters that are useful for non-trivial configuration scenarios.")
            python-factory-boy
            python-pygments
            python-pytest
-           python-pytest-cov ; runs by default
            python-pytest-django
            python-setuptools
            python-shortuuid
@@ -1329,7 +1311,6 @@ server headers required for Cross-Origin Resource Sharing (CORS).")
            python-mock
            python-msgpack
            python-pytest
-           python-pytest-cov
            python-pytest-django
            python-pytest-mock
            python-setuptools
@@ -2186,7 +2167,6 @@ templates and not in python-level form definitions.")
     (build-system pyproject-build-system)
     (native-inputs
      (list python-pytest
-           python-pytest-cov ; runs by default
            python-pytest-django
            python-setuptools
            python-wheel))

gnu/packages/djvu.scm

@@ -29,7 +29,6 @@
   #:use-module (guix git-download)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)
   #:use-module (gnu packages bash)

gnu/packages/dlang.scm

@@ -10,6 +10,7 @@
 ;;; Copyright © 2022 ( <paren@disroot.org>
 ;;; Copyright © 2022 Esther Flashner <esther@flashner.co.il>
 ;;; Copyright © 2025-2026 Jonas Meeuws <jonas.meeuws@gmail.com>
+;;; Copyright © 2026 Daniel Littlewood <dan@danielittlewood.xyz>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -40,6 +41,7 @@
   #:use-module (gnu packages)
   #:use-module (gnu packages base)
   #:use-module (gnu packages bash)
+  #:use-module (gnu packages build-tools)
   #:use-module (gnu packages check)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages curl)
@@ -47,10 +49,10 @@
   #:use-module (gnu packages gdb)
   #:use-module (gnu packages libedit)
   #:use-module (gnu packages llvm)
-  #:use-module (gnu packages ninja)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages python)
+  #:use-module (gnu packages python-build)
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages textutils)
   #:use-module (gnu packages xorg)
@@ -115,6 +117,7 @@
        ("ldc" ,gdmd)
        ("ninja" ,ninja)
        ("python-wrapper" ,python-wrapper)
+       ("python-setuptools" ,python-setuptools)
        ("tzdata" ,tzdata-for-tests)
        ("unzip" ,unzip)))
     (home-page "http://wiki.dlang.org/LDC")
@@ -320,11 +323,11 @@ integration tests...\n")
                                  "|core.thread.osthread-debug-shared")))
                            (#t `("")))))))))))))
     (native-inputs
-     (append (delete "llvm"
-                     (alist-replace "ldc" (list ldc-bootstrap)
-                                    (package-native-inputs ldc-bootstrap)))
-         `(("clang" ,clang-17)          ;propagates llvm and clang-runtime
-           ("python-lit" ,python-lit))))
+     (modify-inputs native-inputs
+       (delete "llvm")
+       (replace "ldc" ldc-bootstrap)
+       (append clang-17                 ;propagates llvm and clang-runtime
+               python-lit)))
     (properties
      (alist-delete 'hidden? (package-properties ldc-bootstrap)))))
 

gnu/packages/dns.scm

@@ -24,7 +24,7 @@
 ;;; Copyright © 2023 Hilton Chain <hako@ultrarare.space>
 ;;; Copyright © 2023 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2024 John Kehayias <john.kehayias@protonmail.com>
-;;; Copyright © 2024, 2025 Ashish SHUKLA <ashish.is@lostca.se>
+;;; Copyright © 2024-2026 Ashish SHUKLA <ashish.is@lostca.se>
 ;;; Copyright © 2025 Artyom V. Poptsov <poptsov.artyom@gmail.com>
 ;;; Copyright © 2026 Anderson Torres <anderson.torres.8519@gmail.com>
 ;;;
@@ -115,6 +115,7 @@
        (uri (git-reference
               (url "git://git.chiark.greenend.org.uk/~ianmdlvl/adns.git")
               (commit (string-append "adns-" version))))
+       (file-name (git-file-name name version))
        (sha256
         (base32
          "0ln3l5j7wb1xazrzl76p9xar52p6l2k1cwy7jazxw1acl71k9h5n"))))
@@ -840,14 +841,14 @@ to result in system-wide compromise.")
 (define-public unbound
   (package
     (name "unbound")
-    (version "1.24.2")
+    (version "1.25.1")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://www.unbound.net/downloads/unbound-"
                            version ".tar.gz"))
        (sha256
-        (base32 "1nwwwmwazwx40nm88lhh7k1basml2ai6j9q30gnclvca00zbbrs4"))))
+        (base32 "0vsqmgnq7ibi0b3akzy45nqf0wazmb0bmpk2fp8wyn89gckvds0g"))))
     (build-system gnu-build-system)
     (outputs '("out" "python"))
     (native-inputs

gnu/packages/docbook.scm

@@ -53,7 +53,6 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (srfi srfi-26))
 
 ;; The fetch-plan, install-plan and phases for docbook-xml tend to vary
@@ -666,7 +665,8 @@ the in DocBook SGML DTDs.")
                (base32
                 "0yd09nypswy3q4scri1dg7dr99d7gd6r2dwx0xm81l9f4y32gs0n"))
               (patches
-               (search-patches "dblatex-inkscape-1.0.patch"))))
+               (search-patches "dblatex-importlib.patch"
+                               "dblatex-inkscape-1.0.patch"))))
     (outputs '("out" "doc"))
     (build-system pyproject-build-system)
     (arguments

gnu/packages/docker.scm

@@ -39,12 +39,12 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system go)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix utils)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)
   #:use-module (gnu packages check)
+  #:use-module (gnu packages containers)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages glib)
   #:use-module (gnu packages golang)
@@ -198,6 +198,50 @@ enforce convention and best practices for metrics collection in Docker
 projects.")
     (license (list license:asl2.0 license:cc-by-sa4.0))))
 
+(define-public go-github-com-moby-policy-helpers
+  (package
+    (name "go-github-com-moby-policy-helpers")
+    (version "0.0.0-20260507153417-a39d60132186")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/moby/policy-helpers")
+              (commit (go-version->git-ref version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "12fa602jianip7dg98f2i9i686s2a9bsclw8sqxw1ac1v19qlqr8"))
+       (modules '((guix build utils)))
+       (snippet '(delete-file-recursively "vendor"))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:go go-1.25
+      #:embed-files #~(list ".*\\.json")
+      #:import-path "github.com/moby/policy-helpers"))
+    (native-inputs
+     (list go-github-com-stretchr-testify))
+    (propagated-inputs
+     (list go-github-com-containerd-containerd-v2
+           go-github-com-containerd-errdefs
+           go-github-com-containerd-platforms
+           go-github-com-distribution-reference
+           go-github-com-gofrs-flock
+           go-github-com-in-toto-in-toto-golang
+           go-github-com-opencontainers-go-digest
+           go-github-com-opencontainers-image-spec
+           go-github-com-pkg-errors
+           go-github-com-sigstore-protobuf-specs
+           go-github-com-sigstore-sigstore
+           go-github-com-sigstore-sigstore-go
+           go-github-com-theupdateframework-go-tuf-v2
+           go-golang-org-x-sync))
+    (home-page "https://github.com/moby/policy-helpers")
+    (synopsis "Policy helpers for Docker")
+    (description "This package provides a policy helpers for Moby (Docker)
+and BuildKit.  It is a work in progress.")
+    (license license:asl2.0)))
+
 (define-public python-docker
   (package
     (name "python-docker")
@@ -328,6 +372,26 @@ application’s services.  Then, using a single command, the containers are
 created and all the services are started as specified in the configuration.")
     (license license:asl2.0)))
 
+(define-public docker-policy-helper
+  (package/inherit go-github-com-moby-policy-helpers
+    (name "docker-policy-helper")
+    (arguments
+     (substitute-keyword-arguments arguments
+       ((#:import-path _) "github.com/moby/policy-helpers/cmd/policy-helper")
+       ((#:install-source? _ #t) #f)
+       ((#:skip-build? _ #t) #f)
+       ((#:tests? _ #t) #f)
+       ((#:unpack-path _ "") "github.com/moby/policy-helpers")
+       ((#:phases phases '%standard-phases)
+        #~(modify-phases #$phases
+            (add-after 'install 'fix-bin-name
+              (lambda _
+                (rename-file (string-append #$output "/bin/policy-helper")
+                             (string-append #$output "/bin/docker-policy-helper"))))))))
+    (native-inputs (package-propagated-inputs go-github-com-moby-policy-helpers))
+    (propagated-inputs '())
+    (inputs '())))
+
 (define-public python-docker-pycreds
   (package
     (name "python-docker-pycreds")

gnu/packages/documentation.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014, 2018 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2014, 2018, 2026 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2014, 2016 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
@@ -41,7 +41,6 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system copy)
   #:use-module (guix build-system perl)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (guix deprecation)
@@ -192,21 +191,20 @@ markup) can be customized and extended by the user.")
 
 (define-deprecated asciidoc-py3 asciidoc)
 
-(define-public doxygen
+(define-public doxygen-1.16
   (package
     (name "doxygen")
-    (version "1.14.0")
+    (version "1.16.1")
     (home-page "https://www.doxygen.nl/")
-    (source (origin
-              (method url-fetch)
-              (uri (list (string-append home-page "files/doxygen-"
-                                        version ".src.tar.gz")
-                         (string-append "mirror://sourceforge/doxygen/rel-"
-                                        version "/doxygen-" version
-                                        ".src.tar.gz")))
-              (sha256
-               (base32
-                "0pbbdvc1zxps6mi58bry16rcrdw6b9gvf9nhv0kp60qkmc8nslyl"))))
+    (source
+     (origin
+       (method url-fetch)
+       (uri (list (string-append home-page "files/doxygen-" version
+                                 ".src.tar.gz")
+                  (string-append "mirror://sourceforge/doxygen/rel-" version
+                                 "/doxygen-" version ".src.tar.gz")))
+       (sha256
+        (base32 "1a33w82ln692qsf3ls0j31f6khljjs1cy3bwd70pra2fa4xy6710"))))
     (build-system cmake-build-system)
     (native-inputs
      (list bison
@@ -250,6 +248,25 @@ IDL (Corba, Microsoft, and UNO/OpenOffice flavors), Fortran, VHDL, Tcl,
 and to some extent D.")
     (license license:gpl3+)))
 
+(define-public doxygen-1.14
+  (package
+    (inherit doxygen-1.16)
+    (name "doxygen")
+    (version "1.14.0")
+    (home-page "https://www.doxygen.nl/")
+    (source (origin
+              (method url-fetch)
+              (uri (list (string-append home-page "files/doxygen-"
+                                        version ".src.tar.gz")
+                         (string-append "mirror://sourceforge/doxygen/rel-"
+                                        version "/doxygen-" version
+                                        ".src.tar.gz")))
+              (sha256
+               (base32
+                "0pbbdvc1zxps6mi58bry16rcrdw6b9gvf9nhv0kp60qkmc8nslyl"))))))
+
+(define-public doxygen doxygen-1.14)
+
 (define-public halibut
   (package
     (name "halibut")
@@ -472,9 +489,8 @@ inspired by Dash.")
     (build-system gnu-build-system)
     (arguments
      (list
-      ;; Essentially a lighter copy of the former python-build-system.
-      ;; Using it rather than pyproject-build-system allows to edit the latter
-      ;; without a texlive + haskell world rebuild.
+      ;; Custom build steps to prevent using pyproject-build-system which
+      ;; allows to edit the latter without a texlive + haskell world rebuild.
       #:phases
       #~(modify-phases %standard-phases
           (delete 'bootstrap)

gnu/packages/dotnet.scm

@@ -62,7 +62,6 @@
   #:use-module (guix utils)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
-  #:use-module (guix build-system python)
   #:use-module (ice-9 match))
 
 (define-public treecc

gnu/packages/duckdb.scm

@@ -25,7 +25,6 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system pyproject)
-  #:use-module ((guix build-system python) #:select (pypi-uri))
   #:use-module (guix build-system r)
   #:use-module (guix download)
   #:use-module (guix gexp)
@@ -148,13 +147,13 @@ system.")
 (define-public r-duckdb
   (package
     (name "r-duckdb")
-    (version "1.5.1")
+    (version "1.5.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "duckdb" version))
        (sha256
-        (base32 "177621m08whqqk4yhj3zrr08l3d9hhlqh3gm9jzhi5cplg47cksq"))
+        (base32 "1dldlfwvc33czvlxfmwaj4p9y6sjjj5iqy98yda47a8kclrqmyam"))
        ;; This package bundles the duckdb sources and builds a custom variant
        ;; of duckdb.  I'd be happy to link it with our duckdb library instead,
        ;; but it does not seem possible to do that.

gnu/packages/ebook.scm

@@ -40,7 +40,6 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (gnu packages)
   #:use-module (gnu packages autotools)
@@ -207,7 +206,7 @@ with Microsoft Compiled HTML (CHM) files.")
            python-css-parser
            python-cssselect
            python-dateutil
-           python-dnspython-1.16
+           python-dnspython
            python-feedparser
            python-fonttools
            python-html2text
@@ -283,7 +282,9 @@ tags = [\"WS_X11\"]")
                  (string-append "[tool.sip.project]
 sip-include-dirs = [\""
                    #$(this-package-input "python-pyqt")
-                   "/lib/python3.11/site-packages/PyQt6/bindings\"]")))
+                   "/lib/python"
+                   #$(version-major+minor (package-version python))
+                   "/site-packages/PyQt6/bindings\"]")))
               (substitute* "src/calibre/ebooks/pdf/pdftohtml.py"
                 (("PDFTOHTML = 'pdftohtml'")
                  (string-append "PDFTOHTML = \""
@@ -415,6 +416,43 @@ e-books for convenient reading.")
 accessing and converting various ebook file formats.")
     (license license:expat)))
 
+(define-public epub-thumbnailer
+  ;; See: <https://github.com/marianosimone/epub-thumbnailer/issues/46>.
+  (let ((commit "de4b5bf0fcd1817d560f180231f7bd22d330f1be")
+        (revision "0"))
+    (package
+      (name "epub-thumbnailer")
+      (version (git-version "0.0.0" revision commit))
+      (home-page "https://github.com/marianosimone/epub-thumbnailer")
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+                (url home-page)
+                (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1bkknrcds67qkgci6kdkv51fz8hzmqg8z1vkkni4jl4vgix7cjxg"))))
+      (build-system pyproject-build-system)
+      (arguments
+       (list
+        #:tests? #f     ;no tests provided
+        #:phases
+        #~(modify-phases %standard-phases
+            (add-after 'strip 'rename-program
+              (lambda _
+                (with-directory-excursion #$output
+                  (rename-file "bin/epub-thumbnailer.py"
+                               "bin/epub-thumbnailer")))))))
+      (propagated-inputs (list python-pillow))
+      (native-inputs (list python-setuptools))
+      (synopsis
+       "Extract the cover of an epub book and create a thumbnail for it")
+      (description
+       "@code{epub-thumbnailer} is a simple script that tries to find a cover
+into an epub file and creates a thumbnail for it.")
+      (license license:gpl3))))
+
 (define-public inkbox
   (package
     (name "inkbox")

gnu/packages/education.scm

@@ -91,7 +91,6 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system go)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system trivial)
   #:use-module (srfi srfi-1))

gnu/packages/efi.scm

@@ -204,48 +204,3 @@ and EFI variable management.")
     ;; Library routines (in lib/) are under LGPL 2.1.
     ;; Compiling/linking/using OpenSSL is permitted.
     (license (list license:gpl2 license:lgpl2.1))))
-
-(define-public efilinux
-  (package
-    (name "efilinux")
-    (version "1.1")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/mfleming/efilinux")
-                    (commit (string-append "efilinux-" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "0b4nxzr3wl5v4b52r79iw1arfgasz26xb38r2blw9v2qz2s1q9w2"))))
-    (build-system gnu-build-system)
-    (arguments
-     `(#:make-flags
-       (list "CC=gcc"
-             ,@(match (%current-system)
-                 ("aarch64-linux"
-                  '("ARCH=aarch64"))
-                 ("armhf-linux"
-                  '("ARCH=arm"))
-                 (_ '()))
-             (string-append "INCDIR=" (assoc-ref %build-inputs "gnu-efi")
-                            "/include")
-             (string-append "LIBDIR=" (assoc-ref %build-inputs "gnu-efi")
-                            "/lib"))
-       #:tests? #f ; No tests exist.
-       #:phases
-       (modify-phases %standard-phases
-         (delete 'configure)
-         (replace 'install
-           (lambda* (#:key outputs #:allow-other-keys)
-             (install-file "efilinux.efi"
-                           (string-append (assoc-ref outputs "out")
-                                          "/libexec"))
-             #t)))))
-    (inputs
-     (list gnu-efi))
-    (synopsis "Minimal Linux loader for UEFI")
-    (description "This package provides a minimal Linux loader as an UEFI
-program.")
-    (home-page "https://github.com/mfleming/efilinux")
-    (license license:bsd-2)))

gnu/packages/electronics.scm

@@ -64,7 +64,6 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix deprecation)
   #:use-module (guix download)
@@ -105,11 +104,13 @@
   #:use-module (gnu packages gnome)
   #:use-module (gnu packages gperf)
   #:use-module (gnu packages graph)
+  #:use-module (gnu packages graphics)
   #:use-module (gnu packages graphviz)
   #:use-module (gnu packages groff)
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages guile)
   #:use-module (gnu packages image)
+  #:use-module (gnu packages image-processing)
   #:use-module (gnu packages java)
   #:use-module (gnu packages libedit)
   #:use-module (gnu packages libffi)
@@ -194,6 +195,10 @@
             (add-after 'unpack 'generate-gdk-pixbuf-loaders-cache-file
               (assoc-ref glib-or-gtk:%standard-phases
                          'generate-gdk-pixbuf-loaders-cache-file))
+            (add-after 'unpack 'fix-python-incompatibilities
+              (lambda _
+                (substitute* (find-files "." "\\.py$")
+                  (("assertEquals") "assertEqual"))))
             (add-before 'build 'set-home-env
               (lambda _
                 (setenv "HOME" "/tmp")))
@@ -240,8 +245,8 @@ are also taken from the original.")
       (license license:gpl3+))))
 
 (define-public abc
-  (let ((commit "80c8a9a1928ef8148a6b504e9590ec07c55c8bcf")
-        (revision "10"))
+  (let ((commit "7bf1177d3900212df9e5c32ffc3ff2f59bc9b02b")
+        (revision "11"))
     (package
       (name "abc")
       (version (git-version "0.0" revision commit))
@@ -253,7 +258,7 @@ are also taken from the original.")
                 (file-name (git-file-name name version))
                 (sha256
                  (base32
-                  "1fbnwsd841z86vfv45443qfpx0l199vf08sgms8wyz19jw7m5ds6"))))
+                  "1zyip7x3av03mp766m60md2a8g8xp4divpgxj6n4760i753i9b85"))))
       (build-system gnu-build-system)
       (inputs
        (list readline))
@@ -278,7 +283,7 @@ formal verification.")
   (package
     (inherit abc)
     (name "abc-yosyshq")
-    (version "0.64")
+    (version "0.65")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -287,12 +292,53 @@ formal verification.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1jk74yq7dnrnai8r9hqc10jcjmgj50jxj6hsflmvc61acm1r3f8r"))))
+                "11viizz5kxh93a56fqxq0ma4945whzlfagw5bb61aw2jlyqym9ka"))))
     (home-page "https://github.com/YosysHQ/abc/")
     (description "ABC is a program for sequential logic synthesis and
 formal verification.  This is the Yosyshq fork of ABC.")
     (license (license:non-copyleft "file:///copyright.txt"))))
 
+(define-public appcsxcad
+  (package
+    (name "appcsxcad")
+    (version "0.2.3")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/thliebig/AppCSXCAD")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "145awcsg4vl2xmrh5yf9fcasmghrai3x6ivgdxmrm1w3v9gyaccf"))))
+    (build-system qt-build-system)
+    (arguments
+     (list
+      #:qtbase qtbase ;for Qt 6
+      #:tests? #f)) ;No tests.
+    (inputs (list boost
+                  cgal
+                  csxcad
+                  eigen
+                  expat
+                  freetype
+                  gmp
+                  hdf5
+                  libjpeg-turbo
+                  libpng
+                  libtiff
+                  lz4
+                  openmpi
+                  qcsxcad
+                  tinyxml
+                  vtk))
+    (home-page "https://github.com/thliebig/AppCSXCAD")
+    (synopsis "Minimal GUI application for the @code{qcsxcad} library")
+    (description
+     "A minimal application for the @code{qcsxcad} library which is used to
+    describe geometrical objects and their physical and non-physical properties.")
+    (license license:gpl3)))
+
 (define-public apycula
   (package
     (name "apycula")
@@ -404,7 +450,7 @@ standard-cells.  It is compatible with @code{ngspice} and @code{Xyce}.")
 (define-public ciel
   (package
     (name "ciel")
-    (version "2.4.0")
+    (version "2.4.1")
     (source
      (origin
        (method git-fetch)
@@ -413,7 +459,7 @@ standard-cells.  It is compatible with @code{ngspice} and @code{Xyce}.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0cj4cpmpqi7aqj9jkpp87qs9bjcg3j97adv1s91pnfrkplff8rh1"))))
+        (base32 "08r30ighn86995dcf7278k9nrci8wbp6kglgk011y6g80z9m2zm7"))))
     (arguments
      (list
       #:tests? #f ;no tests
@@ -443,6 +489,62 @@ standard-cells.  It is compatible with @code{ngspice} and @code{Xyce}.")
 chip design and @acronym{EDA, Electronic Design Automation}.")
     (license license:asl2.0)))
 
+(define-public csxcad
+  (package
+    (name "csxcad")
+    (version "0.6.3")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/thliebig/CSXCAD")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1c383zsv4fp40kmpawamfi9zg3b8x3d4m091ldwk15mii3467hp3"))))
+    (build-system cmake-build-system)
+    (arguments
+     (list
+      #:tests? #f ; No tests.
+      #:configure-flags
+      #~(list
+         (string-append "-DFPARSER_ROOT_DIR=" #$(this-package-input "fparser")))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-cmake-and-sources
+            (lambda _
+              (substitute* "CMakeLists.txt"
+                (("  system\n")
+                 "")
+                (("find_package\\(HDF5 1.8 COMPONENTS C HL REQUIRED\\)")
+                 "find_package(HDF5 REQUIRED COMPONENTS C HL)"))
+              ;; Fix missing `std::`.
+              ;; This is fixed in upstream already but not tagged.
+              (substitute* "src/CSPropDiscMaterial.cpp"
+                (("\tcout ")
+                 "\tstd::cout ")))))))
+    (inputs (list boost
+                  cgal
+                  eigen
+                  fparser
+                  hdf5
+                  gmp
+                  libjpeg-turbo
+                  libpng
+                  libtiff
+                  lz4
+                  mpfr
+                  openmpi
+                  tinyxml
+                  vtk
+                  zlib))
+    (home-page "https://github.com/thliebig/CSXCAD")
+    (synopsis "3D geometry library for C++")
+    (description
+     "@code{csxcad} is a C++ library to describe geometrical objects
+and their physical or non-physical properties for electromagnetics simulations.")
+    (license license:lgpl3+)))
+
 (define-public comedilib
   (package
     (name "comedilib")
@@ -467,7 +569,7 @@ individual low-level driver modules.")
 (define-public eqy
   (package
     (name "eqy")
-    (version "0.64")
+    (version "0.65")
     (source
      (origin
        (method git-fetch)
@@ -480,8 +582,10 @@ individual low-level driver modules.")
     (build-system gnu-build-system)
     (arguments
      (list
-      #:imported-modules (append %default-gnu-imported-modules
-                                 %python-build-system-modules)
+      #:imported-modules %pyproject-build-system-modules
+      #:modules '((guix build gnu-build-system)
+                  ((guix build pyproject-build-system) #:prefix py:)
+                  (guix build utils))
       #:make-flags
       #~(list (string-append "PREFIX=" #$output))
       #:phases
@@ -508,7 +612,7 @@ individual low-level driver modules.")
                 (invoke "make" "-C" "examples/spm")
                 (invoke "make" "-C" "examples/simple"))))
           (add-after 'install 'python:wrap
-            (@@ (guix build python-build-system) wrap)))))
+            (assoc-ref py:%standard-phases 'wrap)))))
     (native-inputs
      (list clang python-minimal-wrapper python-sphinx texinfo yosys))
     (inputs
@@ -917,7 +1021,7 @@ files.")
 (define-public klayout
   (package
     (name "klayout")
-    (version "0.30.7")
+    (version "0.30.8")
     (source
      (origin (method git-fetch)
              (uri (git-reference
@@ -926,7 +1030,7 @@ files.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-               "0xyrn9vhx871vm141hgsb9qrdim51vfk2mw8hcqyam1ixkbz5jjv"))))
+               "0aw0y5k27pslql9pir6nplapj6ml6fkhzd815s13rlnw3bm0fcs6"))))
     (build-system copy-build-system)
     (arguments
      (list
@@ -1069,7 +1173,7 @@ characterization result in a liberty library file.")
 (define-public kicad
   (package
     (name "kicad")
-    (version "10.0.1")
+    (version "10.0.3")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1077,7 +1181,7 @@ characterization result in a liberty library file.")
                     (commit version)))
               (sha256
                (base32
-                "1mnlv8fyz03pfg8pkqwdl5gjz6vsk98c6414lf3wkvrkb85ljaav"))
+                "0ldaj072x16452xw2wszbk20g932rz36zappjrxc4m6ygx298aa3"))
               (file-name (git-file-name name version))))
     (build-system cmake-build-system)
     (arguments
@@ -1202,7 +1306,7 @@ package.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1c0vn13rp0z12rlqhl321pk2gj9577dyky6xj3i6hb040i3v7zrr"))))
+                "1532y6whn1bcwjb417qlga1hibgpfqs594l9zs4c8f5ymaqb8s1b"))))
     (build-system cmake-build-system)
     (arguments
      `(#:configure-flags (list "-DBUILD_FORMATS=html"
@@ -1234,7 +1338,7 @@ package.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0iz4lb33wdsw4f82a0ln8ycgaf39gjws03mvl2j1q9npwj6xl1cm"))))
+                "05h8dbygch2kp4s5ikspxngwv999j7jwsiwm4pzwwcrir7dqzdfl"))))
     (build-system cmake-build-system)
     (native-inputs (list python-wrapper))
     (arguments
@@ -1264,7 +1368,7 @@ libraries.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0jqgyi1yb2zc6w56ba7xama0wnhrqwbbnf2fqvr47xihvdcvs87v"))))
+                "0wdzsn7z11wc5yskk576a4a6qfagsvw0y6r034inxrnfc32aiah9"))))
     (synopsis "Official KiCad footprint libraries")
     (description "This package contains the official KiCad footprint libraries.")))
 
@@ -1281,7 +1385,7 @@ libraries.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0jr70ry6inzc2fy3s300z0zlmihbq95ba1zckyd1wwbpplaj1gbl"))))
+                "01nbjcs3890hyfmafc623ldmfi9n8sjr5m0wripz5fq5fjdnzqxl"))))
     (synopsis "Official KiCad 3D model libraries")
     (description "This package contains the official KiCad 3D model libraries.")))
 
@@ -1303,6 +1407,60 @@ libraries.")
     (description "This package contains the official KiCad project and
 worksheet templates.")))
 
+(define-public kicad-cern-libraries
+  ;; Upstream does not tag releases.
+  (let ((commit "980670fefdf71965aae6c56194d7f2a68c3e6a68")
+        (revision "0"))
+    (package
+      (name "kicad-cern-libraries")
+      (version (git-version "0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+                (url "https://gitlab.com/ohwr/cern-kicad-libs.git")
+                (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0lr1p28gknbgsr86hbzh87plagcyc040v6141xmha280n78h2l62"))))
+      (build-system copy-build-system)
+      (arguments
+       (list
+        #:install-plan
+        #~'(("SchLib" "share/kicad/cern/")
+            ("PcbLib" "share/kicad/cern/")
+            ("CERN.sqlite" "share/kicad/cern/")
+            ("CERN_Linux.kicad_dbl" "share/kicad/cern/")
+            ("fp-lib-table" "share/kicad/cern/")
+            ("sym-lib-table" "share/kicad/cern/")
+            ("README.md" "share/doc/kicad-cern-libraries/")
+            ("LICENSE" "share/doc/kicad-cern-libraries/")
+            ("LICENSES" "share/doc/kicad-cern-libraries/")
+            ("CHECKSUMS" "share/doc/kicad-cern-libraries/")
+            ("pcblib_conversion_log.txt" "share/doc/kicad-cern-libraries/")
+            ("schlib_conversion_log.txt" "share/doc/kicad-cern-libraries/"))
+        #:phases
+        #~(modify-phases %standard-phases
+            (add-after 'unpack 'adapt-library-tables
+              (lambda _
+                (substitute* "sym-lib-table"
+                  (("\\$\\{KICAD9_SYMBOL_DIR\\}")
+                   "${KICAD10_SYMBOL_DIR}")))))))
+      (propagated-inputs (list sqliteodbc))
+      (native-search-paths
+       (list (search-path-specification
+              (variable "CERN_LIB_DIR")
+              (files '("share/kicad/cern"))
+              (separator #f))))
+      (home-page "https://gitlab.com/ohwr/cern-kicad-libs")
+      (synopsis "CERN component libraries for KiCad")
+      (description
+       "This package provides CERN's KiCad component libraries, including
+schematic symbols, footprints, a SQLite-backed database library, and KiCad
+library tables.  The libraries are generated from CERN's Altium Designer
+libraries.")
+      (license license:ohl2-p))))
+
 (define-public lepton-eda
   (package
     (name "lepton-eda")
@@ -1504,7 +1662,7 @@ an embedded event driven algorithm.")
 (define-public librelane
   (package
     (name "librelane")
-    (version "3.0.2")
+    (version "3.0.3")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1513,12 +1671,16 @@ an embedded event driven algorithm.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1v43adkw5c624nd06g11cb609v8pj3prfyyawbq3i4k1w1law597"))))
+                "0g4b5kby7zp8v59xzxmfxh3a2yqvmmsb1wsmasl3cz1aibk343a8"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       #:phases
       #~(modify-phases %standard-phases
+          (add-after 'unpack 'relax-requirements
+            (lambda _
+              (substitute* "pyproject.toml"
+                (("click>=8,<8.3") "click>=8"))))
           (add-after 'compress-documentation 'wrap-program
             (lambda _
               (wrap-program (string-append #$output "/bin/librelane")
@@ -1770,6 +1932,31 @@ management with library, schematic and board editors.")
       (license (list license:expat      ;libfst and fastlz-derived sources
                      license:bsd-2))))) ;for lz4-derived sources
 
+(define-public python-csxcad
+  (package
+    (inherit csxcad)
+    (name "python-csxcad")
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      ;; Tests are broken in v0.6.3.
+      ;; Check on update.
+      #:tests? #f
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'build 'prepare-build
+            (lambda _
+              (chdir "./python")
+              (setenv "CSXCAD_INSTALL_PATH"
+                      #$(this-package-input "csxcad")))))))
+    (native-inputs (list python-minimal python-cython python-numpy
+                         python-setuptools))
+    (inputs (list csxcad fparser hdf5 python-numpy tinyxml))
+    (synopsis "Python bindings for @code{csxcad}")
+    (description "Library for describing geometrical objects and their
+physical and non-physical properties.")
+    (license license:lgpl3+)))
+
 (define-public python-lln-libparse
   (package
     (name "python-lln-libparse")
@@ -2020,7 +2207,7 @@ which allows one to install the M8 firmware on any Teensy.")
 (define-public magic
   (package
     (name "magic")
-    (version "8.3.633")
+    (version "8.3.644")
     (source
      (origin
        (method git-fetch)
@@ -2029,7 +2216,7 @@ which allows one to install the M8 firmware on any Teensy.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1rwrhb0q99rpv4lbiw1sqykwzf9gj1my2wkh6mp8g36rab2vhii3"))))
+        (base32 "0qp1alm4pczfm77r8lxwgzrwh02ihvfmk9sbwjlfbrixg1dn85xb"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -2059,7 +2246,7 @@ versus schematic} tests and can assist with automatic routing.")
 (define-public mcy
   (package
     (name "mcy")
-    (version "0.64")
+    (version "0.65")
     (source
      (origin
        (method git-fetch)
@@ -2074,7 +2261,10 @@ versus schematic} tests and can assist with automatic routing.")
      (list
       #:tests? #f                       ;there are no tests
       #:imported-modules (append %qt-build-system-modules
-                                 %python-build-system-modules)
+                                 %pyproject-build-system-modules)
+      #:modules '((guix build qt-build-system)
+                  ((guix build pyproject-build-system) #:prefix py:)
+                  (guix build utils))
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'build-info-documentation
@@ -2103,7 +2293,7 @@ versus schematic} tests and can assist with automatic routing.")
               (install-it "mcy")
               (install-it "mcy-dash")))
           (add-after 'make-install 'python:wrap
-            (@@ (guix build python-build-system) wrap)))))
+            (assoc-ref py:%standard-phases 'wrap)))))
     (native-inputs
      (list pkg-config
            python-sphinx
@@ -2122,7 +2312,7 @@ coverage.")
 (define-public netgen
   (package
     (name "netgen")
-    (version "1.5.318")
+    (version "1.5.319")
     (source
      (origin
        (method git-fetch)
@@ -2131,7 +2321,7 @@ coverage.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "19rd8y2pspycr2296nhm60fhsgnzlyzb09wx2kgqzg6s7h6cmrr5"))))
+        (base32 "16xd2xcsny1bb6yk4lz34jfpwfb5xi2i9izxjymmalnzhg32i9cz"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -2331,7 +2521,7 @@ Automation}, portable and vendor neutral FPGA place and route tool.")
 (define-public nvc
   (package
     (name "nvc")
-    (version "1.19.3")
+    (version "1.21.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -2340,7 +2530,7 @@ Automation}, portable and vendor neutral FPGA place and route tool.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1zizz2dafm53lzpjayy6vig5pz5ri9cszdivg0jzzh8s3ggkpy1i"))))
+                "00hnrzk9dw88srfmjxxb9xkgnd5n26pmqlcw1bff1y0bckblsr38"))))
     (build-system gnu-build-system)
     (arguments
      (list #:out-of-source? #t
@@ -2479,6 +2669,66 @@ such as:
 @end itemize")
     (license license:expat)))
 
+(define-public openems
+  (package
+    (name "openems")
+    (version "0.0.36")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/thliebig/openEMS")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1vxlknnji7kha0kabpjqh48i4r0rqlla9gcxhn69d0gcw76albmw"))))
+    (build-system cmake-build-system)
+    (arguments
+     (list
+      #:configure-flags
+      #~(list (string-append "-DCSXCAD_ROOT_DIR="
+                             #$(this-package-input "csxcad"))
+              (string-append "-DFPARSER_ROOT_DIR="
+                             #$(this-package-input "fparser")))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-cmake
+            (lambda _
+              (substitute* "CMakeLists.txt"
+                (("  system\n") "")
+                (("find_package\\(HDF5 1.8 COMPONENTS C HL REQUIRED\\)")
+                 "find_package(HDF5 1.8 REQUIRED)"))))
+          (delete 'check)
+          (add-after 'install 'check
+            (lambda* (#:key tests? source inputs #:allow-other-keys)
+              (when tests?
+                (let* ((testsuite (string-append source "/TESTSUITE"))
+                       (testsuite-tmp "/tmp/openEMS-TESTSUITE"))
+                  ;; Testsuite directory needs to be writable.
+                  (copy-recursively testsuite testsuite-tmp)
+                  (invoke "octave" "--no-gui" "--eval"
+                          (string-append
+                            "addpath('" #$output "/share/openEMS/matlab');"
+                            "addpath('"
+                            (search-input-directory inputs "share/CSXCAD/matlab")
+                            "');"
+                            ;; Work around bug in test script.
+                            "addpath('" testsuite-tmp "/helperscripts');"
+                            "run('" testsuite-tmp "/run_testsuite.m');")))))))))
+    (native-inputs (list cmake-minimal octave pkg-config))
+    (inputs (list boost
+                  csxcad
+                  fparser
+                  hdf5
+                  openmpi
+                  tinyxml
+                  vtk))
+    (home-page "https://www.openems.de")
+    (synopsis "Electromagnetic field solver")
+    (description "@code{OpenEMS} is an electromagnetic field solver using
+the @acronym{FDTD, Finite-Difference Time-Domain} method.")
+    (license license:gpl3+)))
+
 (define-public pcb-rnd
   (package
     (name "pcb-rnd")
@@ -3010,7 +3260,6 @@ Numpy arrays for convenience.")
               (setenv "PDM_BUILD_SCM_VERSION" #$version))))))
     (native-inputs
      (list python-pdm-backend
-           python-pytest-cov
            python-setuptools
            python-setuptools-scm
            sby
@@ -3189,8 +3438,12 @@ SystemVerilog, and SystemC, with conversion between languages and to JSON.")
                                           inputs "include/antlr4-runtime"))
                      (antlr4cpp-lib (search-input-file
                                       inputs "lib/libantlr4-runtime.so"))
-                     (python-include (search-input-directory
-                                       inputs "include/python3.11")))
+                     (python-include
+                      (search-input-directory
+                       inputs
+                       (string-append
+                        "include/python"
+                        #$(version-major+minor (package-version python))))))
                 ;; Patch CMake to use our paths directly.
                 (substitute* "src/CMake_antlr4.txt"
                   (("set\\(ANTLR_CLASSPATH \"\"\\)")
@@ -3282,6 +3535,44 @@ integrated circuit Hardware Description Language} and SystemVerilog
 parser library for Python.")
     (license license:expat)))
 
+(define-public python-openems
+  (package
+    (inherit openems)
+    (name "python-openems")
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:tests? #f ; No tests.  Check again on package upgrade.
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-sources
+            ;; Check if this is still needed on upgrade.
+            (lambda _
+              (substitute* "python/openEMS/_nf2ff.pxd"
+                (("cimport cython.numeric")
+                 "import cython
+from cython cimport numeric"))))
+          (add-before 'build 'prepare-build
+            (lambda* _
+              (chdir "./python")
+              (setenv "CSXCAD_INSTALL_PATH"
+                      #$(this-package-input "csxcad"))
+              (setenv "OPENEMS_INSTALL_PATH"
+                      #$(this-package-input "openems")))))))
+    (native-inputs (list python-cython python-setuptools))
+    (inputs (list csxcad
+                  fparser
+                  openems
+                  python-csxcad
+                  python-hdf5storage
+                  python-numpy
+                  tinyxml))
+    (home-page "https://www.openems.de")
+    (synopsis "Python API for the electromagnetic field solver @code{OpenEMS}")
+    (description "@code{OpenEMS} is an electromagnetic field solver using
+the @acronym{FDTD, Finite-Difference Time-Domain} method.")
+    (license license:gpl3+)))
+
 (define-public python-pyucis
   (package
     (name "python-pyucis")
@@ -3317,15 +3608,16 @@ Standard} data mode.")
     (version "0.4.1")
     (source
      (origin
-       (method url-fetch)
-       (uri (pypi-uri "pyvcd" version))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/SanDisk-Open-Source/pyvcd")
+             (commit version)))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "15nnydvr1a4ykh8cagi484sfgvdg0dnjxaw6c0ivhjbrbblpaqnw"))))
+        (base32 "1a1fsgxmpy6gbrs7lp3a56b7d4g6srlp42y5azb1ywjx3w8fiwc6"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-pytest-cov
-           python-setuptools
-           python-setuptools-scm))
+     (list python-pytest python-setuptools python-setuptools-scm))
     (home-page "http://pyvcd.readthedocs.io/")
     (synopsis "Library to manipulate digital wave files")
     (description
@@ -3461,7 +3753,7 @@ form of AXI, AXI lite, and AXI stream modules.")
 (define-public python-edalize
   (package
     (name "python-edalize")
-    (version "0.6.6")
+    (version "0.6.8")
     (source
      (origin
        (method git-fetch)
@@ -3470,7 +3762,7 @@ form of AXI, AXI lite, and AXI stream modules.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "115nc15n2cx4x9irjim07zkg0287418djqd6ja7rm8jrnyldvln9"))))
+        (base32 "04m2lhkclw9fj92k43c06j003qnq9i1yhy2131fvcnkkr0d9438m"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -3513,7 +3805,7 @@ set.")
 (define-public fusesoc
   (package
     (name "fusesoc")
-    (version "2.4.5")
+    (version "2.4.6")
     (source
      (origin
        (method git-fetch)
@@ -3522,7 +3814,7 @@ set.")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1sw0zl6hjlzp1a0agdl9yp901pih70ppzzss18l8f3jxs6q7jm1n"))))
+        (base32 "11bmvk10mszv65ws84jmm220ivwn55v8664kkdm9d4m99pryi2kp"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -3602,10 +3894,7 @@ Automation}.")
                          #$output "/share/info/hdlmake-figures")))))
       #:test-flags #~(list "test_all.py")))
     (native-inputs
-     (list python-pytest-cov
-           python-setuptools
-           python-sphinx
-           texinfo))
+     (list python-pytest python-setuptools python-sphinx texinfo))
     (propagated-inputs (list python-networkx))
     (home-page "https://ohwr.gitlab.io/project/hdl-make/")
     (synopsis "Generate multi-purpose makefiles for HDL projects")
@@ -3768,18 +4057,9 @@ design.")
       ;; Tests are expensive and may introduce race condition on systems with
       ;; high (more than 16) threads count; limit parallel jobs to 8x.
       #~(list
-         "--numprocesses" (number->string (min 8 (parallel-job-count))))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'pathch-pytest-options
-            (lambda _
-              (substitute* "pyproject.toml"
-                ((".*--cov=.*") "")
-                ((".*--self-contained-html.*") "")
-                ((".*-n.*auto.*") "")))))))
+         "--numprocesses" (number->string (min 8 (parallel-job-count))))))
     (native-inputs
-     (list python-pytest-cov
-           python-pytest-html
+     (list python-pytest
            python-pytest-xdist
            python-setuptools))
     (propagated-inputs
@@ -3791,6 +4071,36 @@ design.")
 to enforce it.")
     (license license:gpl3+)))
 
+(define-public python-pyxhdl
+  (package
+    (name "python-pyxhdl")
+    (version "0.53")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/davidel/pyxhdl")
+              (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "16dqqhbg5q6fxlhnfcjimxv1zgziw5g46askjhfg8g2hn7i3vfal"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-backend #~'custom
+      #:test-flags #~(list "tests/test_runner.py")))
+    (native-inputs
+     (list python-setuptools))
+    (propagated-inputs
+     (list python-numpy python-misc-utils))
+    (home-page "https://github.com/davidel/pyxhdl")
+    (synopsis
+     "Python frontend for @acronym{HDL, Hardware Description Languages}")
+    (description
+     "PyXHDL replaces HDL code by Python, generating VHDL (>= 2008) and
+Verilog (SystemVerilog >= 2012) code to be used for synthesis and simulation.")
+    (license license:asl2.0)))
+
 (define-public python-vunit
   (package
     (name "python-vunit")
@@ -3879,6 +4189,71 @@ automated testing of HDL code.")
     ;; subdirectories are under ASL.
     (license (list license:mpl2.0 license:asl2.0))))
 
+(define-public qcsxcad
+  (package
+    (name "qcsxcad")
+    (version "0.6.3")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/thliebig/QCSXCAD")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0ag1shyhsmfsvqm35fi2kfnbcngmln8rjsv88f97gyx9wiqc808y"))))
+    (build-system qt-build-system)
+    (arguments
+     (list
+      #:tests? #f ;No tests.
+      #:qtbase qtbase ;For Qt 6
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-sources
+            ;; Fix missing `std::`-prefix and missing include.
+            ;; This is fixed in upstream but not tagged with a version.
+            (lambda _
+              (substitute* "vtkInteractorStyleRubberBand2DPlane.cpp"
+                (("#include \"vtkCamera.h\"")
+                 "#include <iostream>\n#include \"vtkCamera.h\"")
+                (("\tcerr ")
+                 "\tstd::cerr "))
+              (substitute* "VTKPrimitives.cpp"
+                (("#include \"VTKPrimitives.h\"")
+                 "#include <iostream>\n#include \"VTKPrimitives.h\"")
+                (("\tcerr ")
+                 "\tstd::cerr ")
+                (("\tcout ")
+                 "\tstd::cout "))
+              (substitute* "QVTKStructure.cpp"
+                (("#include \"QVTKStructure.h\"")
+                 "#include <iostream>\n#include \"QVTKStructure.h\"")
+                (("\tcerr ")
+                 "\tstd::cerr ")
+                (("\tcout ")
+                 "\tstd::cout ")))))))
+    (inputs (list boost
+                  cgal
+                  csxcad
+                  eigen
+                  freetype
+                  gmp
+                  libjpeg-turbo
+                  libpng
+                  libtiff
+                  lz4
+                  openmpi
+                  qt5compat
+                  tinyxml
+                  vtk))
+    (home-page "https://github.com/thliebig/QCSXCAD")
+    (synopsis "GUI library for @code{csxcad}")
+    (description
+     "GUI library for @code{csxcad} --- a library for describing geometrical
+    objects and their properties.  This library is used in @code{appcsxcad}
+    which provides a standalone graphical frontend to @{csxcad}.")
+    (license license:lgpl3+)))
+
 (define-public qrouter
   (package
     (name "qrouter")
@@ -4233,7 +4608,7 @@ them usable as simple logic analyzer and/or oscilloscope hardware.")
 (define-public sby
   (package
     (name "sby")
-    (version "0.64")
+    (version "0.65")
     (source
      (origin
        (method git-fetch)
@@ -4242,17 +4617,16 @@ them usable as simple logic analyzer and/or oscilloscope hardware.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0jksspdgq2grk4a80i5yfc9bazfij37wpmrlkvygpz9ys5ny1432"))))
+        (base32 "19cvbvg6jjh7lj1sd7jz7yd5wrlswg6dmyajc7kxgl7dd97ivpwy"))))
     (build-system gnu-build-system)
     (arguments
      (list
       #:parallel-tests? #f
       #:test-target "test"
+      #:imported-modules %pyproject-build-system-modules
       #:modules `((guix build gnu-build-system)
-                  ((guix build python-build-system) #:prefix python:)
+                  ((guix build pyproject-build-system) #:prefix python:)
                   (guix build utils))
-      #:imported-modules `(,@%default-gnu-imported-modules
-                           (guix build python-build-system))
       #:make-flags #~(list (string-append "PREFIX=" #$output))
       #:phases
       #~(modify-phases %standard-phases
@@ -4516,7 +4890,7 @@ unique design feature of Trilinos is its focus on packages.")
 (define-public verilator
   (package
     (name "verilator")
-    (version "5.046")
+    (version "5.048")
     (source
      (origin
        (method git-fetch)
@@ -4525,7 +4899,7 @@ unique design feature of Trilinos is its focus on packages.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1gr1qhxvl4856hnmnx46dqd2qp0jhdh959zm2qfmxzzh19np7xkm"))))
+        (base32 "16c1x66kqmc5ldqjij81kypj471fibfihcqn6kz4wbxvnn0smyn6"))))
     (native-inputs
      (list autoconf
            automake
@@ -4665,7 +5039,7 @@ parallel computing platforms.  It also supports serial execution.")
 (define-public yosys
   (package
     (name "yosys")
-    (version "0.64")
+    (version "0.65")
     (source
      (origin
        (method git-fetch)
@@ -4673,15 +5047,16 @@ parallel computing platforms.  It also supports serial execution.")
               (url "https://github.com/YosysHQ/yosys")
               (commit (string-append "v" version))))
        (sha256
-        (base32 "13gw5msk1kv05jkb330nybvx2s0ixm6l6mdpyapnqmv3lkhby1mj"))
+        (base32 "04sks9hj8h9vy6zii29zjgq38h2h4nz8a7xxiq33p1aivwq7bz8q"))
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (outputs '("out" "doc"))
     (arguments
      (list
-      #:test-target "vanilla-test"  ;TODO: restore to "test" with next release
+      #:test-target "all"
       #:make-flags
       #~(list (string-append "PREFIX=" #$output)
+              "ENABLE_FUNCTIONAL_TESTS=1"
               "ENABLE_EDITLINE=1"
               "ENABLE_LIBYOSYS=1"
               "ENABLE_PYOSYS=1"
@@ -4696,6 +5071,11 @@ parallel computing platforms.  It also supports serial execution.")
                       #$(this-package-input "abc-yosyshq")))
       #:phases
       #~(modify-phases %standard-phases
+          ;; TODO: Remove when fixed.
+          (add-after 'unpack 'remove-aiger
+            (lambda _
+              (substitute* "tests/Makefile"
+                ((".*aiger.*") ""))))
           (add-before 'configure 'fix-paths
             (lambda* (#:key inputs #:allow-other-keys)
               (substitute* "backends/smt2/smtio.py"
@@ -4786,12 +5166,12 @@ parallel computing platforms.  It also supports serial execution.")
               (git-reference
                 (url "https://github.com/povik/yosys-slang")
                 ;; No tags, nor releases.
-                (commit "4e53d772996184b07e9bfe784060f96e6cb0a267")
+                (commit "cf20b1ba0d2c9df0508f927930a87565e7e0d220")
                 (recursive? #t)))  ;requires slang and fmt
              (file-name "yosys-slang")
              (sha256
               (base32
-               "1jjr1b6xd1sr9fkyfyl4y2wkzl51m7g10bw97mnw81v2mzssrs2q")))))
+               "1rl9i19a90yis33g549ida7lygfh1qka5k96zdrvk0shn2jnm8g4")))))
     ;; Optional dependencies increase considerably package closure.
     ;; - gtkwave: required only for vcd2fst binary, used by ‘sim’ command.
     ;; - graphviz, xdot: used by ‘show’ command to display schematics.
@@ -4822,7 +5202,7 @@ for various application domains, including FPGAs and ASICs.")
               license:expat
               ;; yosys-slang/third_party/fmt
               license:bsd-2 license:bsd-3 license:psfl
-              ;; yosys
+              ;; yosys, yosys-slang
               license:isc))))
 
 (define-deprecated-package yosys-clang yosys)

gnu/packages/emacs-build.scm

@@ -62,7 +62,7 @@ as bold, underscore or italic.")
 (define-public emacs-buttercup
   (package
     (name "emacs-buttercup")
-    (version "1.38")
+    (version "1.40")
     (source
      (origin
        (method git-fetch)
@@ -72,9 +72,7 @@ as bold, underscore or italic.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "09n8skr5wi8bs7x81d5bi6z89dd8s1zi9a5f4r2qadaz69slncxq"))
-       (patches
-        (search-patches "emacs-buttercup-1.38-native-comp-spy-on-trampoline-scope.patch"))))
+         "1b55cfh4wr40max2c42crvaa6wid7a83g28yximsin98i32q5f5r"))))
     (build-system emacs-build-system)
     (arguments
      (list

gnu/packages/emacs.scm

@@ -28,6 +28,7 @@
 ;;; Copyright © 2025 Nicolas Graves <ngraves@ngraves.fr>
 ;;; Copyright © 2025 Jake Forster <jakecameron.forster@gmail.com>
 ;;; Copyright © 2025 John Kehayias <john@guixotic.coop>
+;;; Copyright © 2026 Daniel Littlewood <dan@danielittlewood.xyz>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -701,8 +702,8 @@ editor (with wide ints)" )
         #~(cons "--with-wide-int" #$flags))))))
 
 (define-public emacs-next-minimal
-  (let ((commit "509228fc6c026921c67459f21164e0325efc583b")
-        (revision "2"))
+  (let ((commit "d969185878bf50faedbafbd609c361875b891b53")
+        (revision "3"))
   (package
     (inherit emacs-minimal)
     (name "emacs-next-minimal")
@@ -716,7 +717,7 @@ editor (with wide ints)" )
              (commit commit)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "04aalyrx5jysk5fhlka98fhfx23sy99zp8j16i0ils20sflyig6n"))
+        (base32 "1pmx71b6pazjpyfs1d2ngby1idsviwbap3xbr5b7dgf0rngim32s"))
        (patches
         (search-patches "emacs-next-disable-jit-compilation.patch"
                         "emacs-next-exec-path.patch"
@@ -869,7 +870,7 @@ Started in 2014 as a GSOC project, Guile-Emacs was resurrected in 2024.")
          "0vfw7z9i2s9np6nmx1d4dlsywm044rkaqarn7akffmb6bf1j6zv5"))))
     (build-system gnu-build-system)
     (native-inputs
-     `(("gettext" ,gettext-minimal)))
+     (list gettext-minimal))
     (arguments
      `(#:configure-flags
        (list (string-append "--with-charmaps="

gnu/packages/embedded.scm

@@ -45,7 +45,6 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system trivial)
   #:use-module ((guix build utils) #:select (alist-replace delete-file-recursively))
   #:use-module (gnu packages)
@@ -1920,7 +1919,7 @@ and Zilog Z80 families, plus many of their variants.")
 (define-public python-psptool
   (package
     (name "python-psptool")
-    (version "3.1")
+    (version "3.6")
     (source
      (origin
        (method git-fetch)
@@ -1929,36 +1928,40 @@ and Zilog Z80 families, plus many of their variants.")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1fbx3b42cr7dv07p2b9qgzrgs19i066ysfasgvlfjscg2v68j8d0"))))
+        (base32 "1s53bqimh1ih0xqmyppm2ikphi8r9492k67kn4pz3jngh2gp1wnf"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:test-backend #~'unittest))
     (native-inputs
-     (list python-psptrace-bootstrap
+     (list python-hatch-vcs
+           python-hatchling
+           python-psptrace-bootstrap
            python-setuptools))
     (propagated-inputs
      (list python-cryptography
            python-prettytable))
     (home-page "https://github.com/PSPReverse/psptool")
     (synopsis "Tool for dealing with AMD binary blobs")
-    (description "PSPTool is a tool for dealing with AMD binary blobs")
+    (description "PSPTool is a tool for dealing with AMD binary blobs.")
     (license license:gpl3+)))
 
 (define-public python-psptrace
   (package
     (name "python-psptrace")
-    (version "0.7")
+    (version "0.11")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "psptrace" version))
        (sha256
-        (base32 "1mrympnpkkns2dxq34h9x9qn667ihdvbbf0wpmbp3jli0n7bj7ih"))))
+        (base32 "0lzv0dy2m5g6q4rpjd4wpw0p7n8v8crkx7akbp53lpy1c6y40iw8"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:tests? #f)) ;no tests in PyPI or Git
     (native-inputs
-     (list python-setuptools))
+     (list python-hatch-vcs
+           python-hatchling
+           python-setuptools))
     (propagated-inputs
      (list python-prettytable
            python-psptool))
@@ -2033,13 +2036,7 @@ whereas kdmx creates pseudo-ttys.")
       ;; tests: 631 passed, 27 skipped, 1 warning
       #:test-flags
       ;; E   ModuleNotFoundError: No module named 'mbed_tools_ci_scripts'
-      #~(list "--ignore=tests/ci_scripts/test_sync_board_db.py")
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'fix-pytest-config
-            (lambda _
-              (substitute* "pytest.ini"
-                (("addopts = .*") "")))))))
+      #~(list "--ignore=tests/ci_scripts/test_sync_board_db.py")))
     (native-inputs
      (list python-factory-boy
            python-pytest

gnu/packages/emulators.scm

@@ -68,6 +68,7 @@
   #:use-module (gnu packages bash)
   #:use-module (gnu packages bison)
   #:use-module (gnu packages boost)
+  #:use-module (gnu packages build-tools)
   #:use-module (gnu packages cdrom)
   #:use-module (gnu packages check)
   #:use-module (gnu packages cmake)
@@ -107,7 +108,6 @@
   #:use-module (gnu packages music)
   #:use-module (gnu packages ncurses)
   #:use-module (gnu packages networking)
-  #:use-module (gnu packages ninja)
   #:use-module (gnu packages parallel)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages pretty-print)
@@ -140,7 +140,6 @@
   #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system trivial))
@@ -148,7 +147,7 @@
 (define-public ares
   (package
     (name "ares")
-    (version "145")
+    (version "147")
     (source
      (origin
        (method git-fetch)
@@ -157,23 +156,28 @@
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "074kkgrbiga7grkwhnhw51ih7krxgf91m9zrrwjkj4q1hdjhlz5a"))))
+        (base32 "1b4xixngp8md2ishf3cyfwpzjcsvjb5zp678can5dcmv9z1dlsis"))
+       (modules '((guix build utils)))
+       (snippet
+        ;; Delete non-free blobs: Supersoft Diagnostics II.
+        #~(delete-file-recursively "tests/i8080/tests"))))
     (build-system cmake-build-system)
     (arguments
-     (list #:tests? #f                  ; No tests
-           #:configure-flags
-           #~(list "-DARES_BUILD_LOCAL=FALSE"
-                   "-DARES_BUILD_OFFICIAL=TRUE"
-                   "-DARES_BUNDLE_SHADERS=FALSE"
-                   "-DARES_SKIP_DEPS=TRUE"
-                   (string-append "-DARES_VERSION_OVERRIDE=" #$version))
-           #:phases
-           #~(modify-phases %standard-phases
-               (add-after 'unpack 'avoid-libglvnd
-                 (lambda _
-                   ;; XXX: Our mesa doesn't have libglvnd support.
-                   (substitute* "ruby/cmake/os-linux.cmake"
-                     (("OpenGL::GLX") "OpenGL::GL")))))))
+     (list
+      #:tests? #f                       ; non-free blobs
+      #:configure-flags
+      #~(list "-DARES_BUILD_LOCAL=FALSE"
+              "-DARES_BUILD_OFFICIAL=TRUE"
+              "-DARES_BUNDLE_SHADERS=FALSE"
+              "-DARES_SKIP_DEPS=TRUE"
+              (string-append "-DARES_VERSION_OVERRIDE=" #$version))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'avoid-libglvnd
+            (lambda _
+              ;; TODO: Our mesa doesn't have libglvnd support.
+              (substitute* "ruby/cmake/os-linux.cmake"
+                (("OpenGL::GLX") "OpenGL::GL")))))))
     (native-inputs
      (list pkg-config))
     (inputs
@@ -1264,7 +1268,8 @@ Enjoy all of your favorite Atari 2600 games on your PC thanks to Stella!")
         (base32 "1xf15b6c3i0vv92b420a92pfvfaxhji56ivin8pn5r7fajkqyfb7"))))
     (build-system gnu-build-system)
     (native-inputs
-     (list pkg-config nasm which))
+     (cons* pkg-config which
+            (maybe-nasm)))
     (inputs
      (list freetype
            glu
@@ -1289,8 +1294,6 @@ Enjoy all of your favorite Atari 2600 games on your PC thanks to Stella!")
                       (list "all" (string-append "PREFIX=" out)))
        ;; There are no tests.
        #:tests? #f))
-    ;; As per the Makefile (in projects/unix/Makefile):
-    (supported-systems '("i686-linux" "x86_64-linux"))
     (home-page "https://www.mupen64plus.org/")
     (synopsis "Nintendo 64 emulator core library")
     (description
@@ -2164,7 +2167,9 @@ as RetroArch.")
               (lambda _
                 (install-file "mupen64plus_next_libretro.so"
                               (string-append #$output "/lib/libretro/")))))))
-      (native-inputs (list nasm pkg-config))
+      (native-inputs
+       (cons* pkg-config
+              (maybe-nasm)))
       (inputs (list mesa libpng minizip unzip xxhash zlib))
       (home-page "https://github.com/libretro/mupen64plus-libretro-nx")
       (synopsis "Improved Mupen64Plus libretro core")

gnu/packages/enchant.scm

@@ -41,7 +41,6 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix licenses)
   #:use-module (srfi srfi-1))
 

gnu/packages/engineering.scm

@@ -33,7 +33,7 @@
 ;;; Copyright © 2022 Peter Polidoro <peter@polidoro.io>
 ;;; Copyright © 2022 Malte Frank Gerdes <malte.f.gerdes@gmail.com>
 ;;; Copyright © 2022 Greg Hogan <code@greghogan.com>
-;;; Copyright © 2022, 2024, 2025 Artyom V. Poptsov <poptsov.artyom@gmail.com>
+;;; Copyright © 2022, 2024-2026 Artyom V. Poptsov <poptsov.artyom@gmail.com>
 ;;; Copyright © 2022, 2025 Maxim Cournoyer <maxim@guixotic.coop>
 ;;; Copyright © 2022, 2023, 2025 Felix Gruber <felgru@posteo.net>
 ;;; Copyright © 2023 Theofilos Pechlivanis <theofilos.pechlivanis@gmail.com>
@@ -46,7 +46,7 @@
 ;;; Copyright © 2025 Matthew Elwin <elwin@northwestern.edu>
 ;;; Copyright © 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2025 Remco van 't Veer <remco@remworks.net>
-;;; Copyright © 2025 bdunahu <bdunahu@operationnull.com>
+;;; Copyright © 2025-2026 bdunahu <bdunahu@operationnull.com>
 ;;; Copyright © 2026 Cayetano Santos <csantosb@inventati.org>
 ;;; Copyright © 2026 Daniel Khodabakhsh <d@niel.khodabakh.sh>
 ;;; Copyright © 2026 Spencer King <spencer.king@wustl.edu>
@@ -77,7 +77,6 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix download)
   #:use-module (guix gexp)
@@ -438,9 +437,8 @@ optimizer; and it can produce photorealistic and design review images.")
                 "0x37vfp6k0d2z3gnig0hbicvi0jp8v267xjnn3z8jdllpiaa6p3k"))
               (snippet
                ;; Remove a non-free file.
-               '(begin
-                  (delete-file "doc/psfig.sty")
-                  #t))
+               #~(begin
+                   (delete-file "doc/psfig.sty")))
               (patches (search-patches "fastcap-mulSetup.patch"
                                        "fastcap-mulGlobal.patch"))))
     (build-system gnu-build-system)
@@ -450,79 +448,93 @@ optimizer; and it can produce photorealistic and design review images.")
      ;; LaTeX Warning: Citation `nabors91' on page 2 undefined on input line
      ;; 3.
      `(("texlive" ,(texlive-local-tree))
-       ("ghostscript" ,ghostscript)))
+       ("ghostscript" ,ghostscript)
+       ("libfaketime" ,libfaketime)))
     (arguments
-     `(#:make-flags '("CC=gcc" "RM=rm" "SHELL=sh" "all")
+     (list
+      #:make-flags #~(list "CC=gcc" "RM=rm" "SHELL=sh"
+                           (string-append
+                            "CFLAGS="
+                            "-Wno-error=implicit-int"
+                            " -Wno-error=return-mismatch"
+                            " -Wno-error=implicit-function-declaration")
+                           "all")
        #:parallel-build? #f
        #:tests? #f ;; no tests-suite
-       #:modules ((srfi srfi-1)
-                  ,@%default-gnu-modules)
+       #:modules `((srfi srfi-1)
+                   ,@%default-gnu-modules)
        #:phases
-       (modify-phases %standard-phases
-         (add-after 'build 'make-doc
-           (lambda _
-             (invoke "make" "CC=gcc" "RM=rm" "SHELL=sh" "manual")))
-         (add-before 'make-doc 'fix-doc
-           (lambda _
-             (substitute* "doc/Makefile" (("/bin/rm") (which "rm")))
-             (substitute* (find-files "doc" "\\.tex")
-               (("\\\\special\\{psfile=([^,]*),.*scale=([#0-9.]*).*\\}"
-                 all file scale)
-                (string-append "\\includegraphics[scale=" scale "]{"
-                               file "}"))
-               (("\\\\psfig\\{figure=([^,]*),.*width=([#0-9.]*in).*\\}"
-                 all file width)
-                (string-append "\\includegraphics[width=" width "]{"
-                               file "}"))
-               (("\\\\psfig\\{figure=([^,]*),.*height=([#0-9.]*in).*\\}"
-                 all file height)
-                (string-append "\\includegraphics[height=" height "]{"
-                               file "}"))
-               (("\\\\psfig\\{figure=([^,]*)\\}" all file)
-                (string-append "\\includegraphics{" file "}")))
-             (substitute* '("doc/mtt.tex" "doc/tcad.tex" "doc/ug.tex")
-               (("^\\\\documentstyle\\[(.*)\\]\\{(.*)\\}"
-                 all options class)
-                (string-append "\\documentclass[" options "]{"
-                               class "}\n"
-                               "\\usepackage{graphicx}\n"
-                               "\\usepackage{robinspace}"))
-               (("\\\\setlength\\{\\\\footheight\\}\\{.*\\}" all)
-                (string-append "%" all))
-               (("\\\\setstretch\\{.*\\}" all)
-                (string-append "%" all)))
-             #t))
-         (delete 'configure)
-         (add-before 'install 'clean-bin
-           (lambda _
-             (delete-file (string-append (getcwd) "/bin/README"))
-             #t))
-         (add-before 'install 'make-pdf
-           (lambda _
-             (setenv "TEXMFVAR" "/tmp")     ;For texlive font cache
-             (with-directory-excursion "doc"
-               (and
-                (for-each (lambda (file)
-                            (invoke "dvips" file "-o"))
-                          (find-files "." "\\.dvi"))
-                (for-each (lambda (file)
-                            (invoke "ps2pdf" file))
-                          '("mtt.ps" "ug.ps" "tcad.ps"))
-                (invoke "make" "clean")))))
-         (replace 'install
-           (lambda* (#:key outputs #:allow-other-keys)
-             (let* ((out (assoc-ref outputs "out"))
-                    (data (string-append out "/share"))
-                    (bin (string-append out "/bin"))
-                    (doc (string-append data "/doc/" ,name "-" ,version))
-                    (examples (string-append doc "/examples")))
-               (with-directory-excursion "bin"
-                 (for-each (lambda (f)
-                             (install-file f bin))
-                           (find-files "." ".*")))
-               (copy-recursively "doc" doc)
-               (copy-recursively "examples" examples)
-               #t))))))
+       #~(modify-phases %standard-phases
+           (add-after 'build 'make-doc
+             (lambda _
+               (invoke "faketime"
+                       "1970-01-01 00:00:00"
+                       "make" "CC=gcc" "RM=rm" "SHELL=sh" "manual")))
+           (add-before 'make-doc 'fix-doc
+             (lambda _
+               (substitute* "doc/Makefile" (("/bin/rm") (which "rm")))
+               (substitute* (find-files "doc" "\\.tex")
+                 (("\\\\special\\{psfile=([^,]*),.*scale=([#0-9.]*).*\\}"
+                   all file scale)
+                  (string-append "\\includegraphics[scale=" scale "]{"
+                                 file "}"))
+                 (("\\\\psfig\\{figure=([^,]*),.*width=([#0-9.]*in).*\\}"
+                   all file width)
+                  (string-append "\\includegraphics[width=" width "]{"
+                                 file "}"))
+                 (("\\\\psfig\\{figure=([^,]*),.*height=([#0-9.]*in).*\\}"
+                   all file height)
+                  (string-append "\\includegraphics[height=" height "]{"
+                                 file "}"))
+                 (("\\\\psfig\\{figure=([^,]*)\\}" all file)
+                  (string-append "\\includegraphics{" file "}")))
+               (substitute* '("doc/mtt.tex" "doc/tcad.tex" "doc/ug.tex")
+                 (("^\\\\documentstyle\\[(.*)\\]\\{(.*)\\}"
+                   all options class)
+                  (string-append "\\documentclass[" options "]{"
+                                 class "}\n"
+                                 "\\usepackage{graphicx}\n"
+                                 "\\usepackage{robinspace}"))
+                 (("\\\\setlength\\{\\\\footheight\\}\\{.*\\}" all)
+                  (string-append "%" all))
+                 (("\\\\setstretch\\{.*\\}" all)
+                  (string-append "%" all)))))
+           (delete 'configure)
+           (add-before 'install 'clean-bin
+             (lambda _
+               (delete-file (string-append (getcwd) "/bin/README"))))
+           (add-before 'install 'make-pdf
+             (lambda _
+               (setenv "TEXMFVAR" "/tmp")     ;For texlive font cache
+               (with-directory-excursion "doc"
+                 (for-each (lambda (file)
+                             (invoke "faketime"
+                                     "-f"
+                                     "1970-01-01 00:00:00"
+                                     "dvips" file "-o"))
+                           (find-files "." "\\.dvi"))
+                 (for-each (lambda (file)
+                             (invoke "faketime"
+                                     "-f"
+                                     "1970-01-01 00:00:00"
+                                     "ps2pdf" file))
+                           '("mtt.ps" "ug.ps" "tcad.ps"))
+                 (invoke "make" "clean"))))
+           (replace 'install
+             (lambda _
+               (let* ((data (string-append #$output "/share"))
+                      (bin (string-append #$output "/bin"))
+                      (doc (string-append data "/doc/" #$name "-" #$version))
+                      (examples (string-append doc "/examples")))
+                 (with-directory-excursion "bin"
+                   (for-each (lambda (f)
+                               (install-file f bin))
+                             (find-files "." ".*")))
+                 (with-directory-excursion "doc"
+                   (for-each (lambda (f)
+                               (install-file f doc))
+                             (find-files "." ".pdf")))
+                 (copy-recursively "examples" examples)))))))
     (home-page "https://www.rle.mit.edu/cpg/research_codes.htm")
     (synopsis "Multipole-accelerated capacitance extraction program")
     (description
@@ -901,64 +913,65 @@ user-level language.")
 
 ;; TODO: Keep in sync with radare2.
 (define-public iaito
-  ;; Commit "Release 6.1.2"
-  (let ((commit "790878048ecb62f4d2f1b5f848948059dd5bb8fe")
-        (revision "1"))
-    (package
-      (name "iaito")
-      (version (git-version "6.1.2" revision commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                       (url "https://github.com/radareorg/iaito")
-                       (commit commit)))
-                (sha256
-                 (base32
-                  "00nqn3mx2fj5higz4niwl0nx04vnjwzccw6zjx3rhwf6fj5yfamm"))
-                (file-name (git-file-name name version))))
-      (build-system gnu-build-system)
-      (arguments
-       (list
-        #:tests? #f ;no tests
-        #:modules '((guix build gnu-build-system) (guix build qt-utils)
-                    (guix build utils))
-        #:imported-modules `((guix build qt-utils)
-                             ,@%default-gnu-imported-modules)
-        #:phases
-        #~(modify-phases %standard-phases
-            ;; The build system assumes the sdb lib is installed alongside
-            ;; radare2. We already patch the radare2 package to use a
-            ;; system-installed sdb rather than install its own, so we must
-            ;; propagate those changes here.
-            (add-before 'configure 'add-sdb-libs
-              (lambda _
-                (substitute* '("./src/lib_radare2.pri")
-                  (("pkg-config --libs r_core" all)
-                   (string-append all " sdb")))))
-            (add-after 'install 'wrap-qt
-              (lambda* (#:key inputs outputs #:allow-other-keys)
-                (wrap-all-qt-programs #:outputs outputs
-                                      #:inputs inputs
-                                      #:qtbase (assoc-ref inputs "qtbase")))))))
-      (inputs
-       (list capstone
-             libuv
-             libzip
-             lz4
-             openssl
-             qtbase
-             qtsvg
-             qtwayland
-             radare2
-             sdb))
-      (native-inputs
-       (list pkg-config python-minimal-wrapper))
-      (home-page "https://github.com/radareorg/iaito")
-      (synopsis "Official radare2 GUI")
-      (description "Iaito is the official graphical interface for radare2, a
+  (package
+    (name "iaito")
+    (version "6.1.4")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                     (url "https://github.com/radareorg/iaito")
+                     (commit version)))
+              (sha256
+               (base32
+                "16sp73k6ighjwp80nvf55lwzv0fb8p4ki76mnsc8xhl3vq7pka0w"))
+              (file-name (git-file-name name version))))
+    (build-system gnu-build-system)
+    (arguments
+     (list
+      #:tests? #f ;no tests
+      #:modules '((guix build gnu-build-system) (guix build qt-utils)
+                  (guix build utils))
+      #:imported-modules `((guix build qt-utils)
+                           ,@%default-gnu-imported-modules)
+      #:phases
+      #~(modify-phases %standard-phases
+          ;; The build system assumes the sdb lib is installed alongside
+          ;; radare2. We already patch the radare2 package to use a
+          ;; system-installed sdb rather than install its own, so we must
+          ;; propagate those changes here.
+          (add-before 'configure 'add-sdb-libs
+            (lambda _
+              (substitute* '("./src/lib_radare2.pri")
+                (("pkg-config --libs r_core" all)
+                 (string-append all " sdb")))))
+          (add-after 'install 'wrap-qt
+            (lambda* (#:key inputs outputs #:allow-other-keys)
+              (wrap-all-qt-programs #:outputs outputs
+                                    #:inputs inputs
+                                    #:qtbase (assoc-ref inputs "qtbase")))))))
+    (inputs
+     (list capstone
+           libuv
+           libzip
+           lz4
+           openssl
+           qtbase
+           qtsvg
+           qtwayland
+           radare2
+           sdb))
+    (native-inputs
+     (list pkg-config python-minimal-wrapper))
+    (native-search-paths (list (search-path-specification
+                                 (variable "R2_LIBR_PLUGINS")
+                                 (files (list "lib/radare2"))
+                                 (separator #f)))) ;single value
+    (home-page "https://github.com/radareorg/iaito")
+    (synopsis "Official radare2 GUI")
+    (description "Iaito is the official graphical interface for radare2, a
 libre reverse engineering framework.  Iaito focuses on simplicity, parity with
 commands, features, and keybindings.")
-      (license license:gpl3+))))
+    (license license:gpl3+)))
 
 (define-public inspekt3d
   (let ((commit "703f52ccbfedad2bf5240bf8183d1b573c9d54ef")
@@ -1042,32 +1055,6 @@ in the context of per-cpu data.  The library offers ABI headers to interface
 with the kernel and various utilities such as per-cpu counters.")
       (license (list license:lgpl2.1 license:expat)))))
 
-(define-public linsmith
-  (package
-    (name "linsmith")
-    (version "0.99.33")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append
-                    "mirror://sourceforge/linsmith/linsmith/linsmith-"
-                    version "/linsmith-" version ".tar.gz"))
-              (sha256
-               (base32
-                "1629p29casy9pgy8hzva1bmgrvh923qk01ls3anik6zqn6swkjfn"))))
-    (build-system gnu-build-system)
-    (arguments
-     '(#:configure-flags '("CFLAGS=-fcommon")))
-    (native-inputs
-     (list pkg-config))
-    (inputs
-     (list gtk+-2 libgnomeui))
-    (home-page "https://jcoppens.com/soft/linsmith/index.en.php")
-    (synopsis "Smith Charting program")
-    (description "LinSmith is a Smith Charting program, mainly designed for
-educational use.  As such, there is an emphasis on capabilities that improve
-the 'showing the effect of'-style of operation.")
-    (license license:gpl2+)))
-
 (define-public valeronoi
   (package
     (name "valeronoi")
@@ -1240,7 +1227,7 @@ specified in rfc2217 and a (Linux specific) CAN mode.")
 (define-public minicom
   (package
     (name "minicom")
-    (version "2.10")
+    (version "2.11.1")
     (source
      (origin
        (method git-fetch)
@@ -1248,7 +1235,7 @@ specified in rfc2217 and a (Linux specific) CAN mode.")
              (url "https://salsa.debian.org/minicom-team/minicom.git")
              (commit version)))
        (sha256
-        (base32 "0sxbyf1li3lsrvkjpn04xz6ywa42ggfc1fhdrmsibfkhqja9abn0"))
+        (base32 "15k20qbxrjdxadwzkp31hjy7apdasrsgs532kwmlkpzs92ff4ghs"))
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (arguments
@@ -1373,24 +1360,33 @@ determines the frequencies, decay constants, amplitudes, and phases of those sin
 (define-public guile-libctl
   (package
     (name "guile-libctl")
-    (version "4.2.0")
+    (version "4.6.0")
     (source (origin
-              (method url-fetch)
-              (uri
-               (string-append
-                "https://github.com/NanoComp/libctl/releases/download/v"
-                version "/libctl-" version ".tar.gz"))
+              (method git-fetch)
+              (uri (git-reference
+                     (url "https://github.com/NanoComp/libctl")
+                     (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "0x8r56lpfq83kfbq28vr25icl19xpfd6fjrxzcpdmv30l9pash83"))))
+                "1lsch1qc5w9yyprrvawfwbnz7na4qah0p752kxxv144xp8yq98x7"))))
     (build-system gnu-build-system)
     (arguments
-      `(#:configure-flags '("--enable-shared")))
+     (list #:configure-flags
+           #~(list "--enable-shared")
+           #:phases
+           #~(modify-phases %standard-phases
+               ;; Avoid bin/sh shebang in configure.
+               (add-before 'bootstrap 'no-/bin/sh
+                 (lambda _ (delete-file "autogen.sh"))))))
     (native-inputs
-     `(("fortran" ,gfortran)))
+     (list autoconf
+           automake
+           libtool
+           gfortran))
     (inputs
-     (list guile-2.2))
-    (home-page "http://ab-initio.mit.edu/wiki/index.php/Libctl")
+     (list guile-3.0))
+    (home-page "https://libctl.readthedocs.io/en/latest/")
     (synopsis "Flexible control files implementation for scientific simulations")
     (description
      "Libctl is a Guile-based library implementing flexible control files
@@ -1400,7 +1396,7 @@ for scientific simulations.")
 (define-public mpb
   (package
     (name "mpb")
-    (version "1.8.0")
+    (version "1.12.0")
     (source (origin
               (method url-fetch)
               (uri
@@ -1409,50 +1405,41 @@ for scientific simulations.")
                 version "/mpb-" version ".tar.gz"))
               (sha256
                (base32
-                "1jgrb7dd6qs6j6y1gnxmdgrh79l2bvqa6nk60a4pw1annsks4brd"))))
+                "197dm8z5hfikivb73rhywyq976rn1k621bf1admgc5xjaii20awd"))))
     (build-system gnu-build-system)
     (arguments
-     `(#:configure-flags
-       (list (string-append "--with-libctl="
-                            (assoc-ref %build-inputs "libctl")
-                            "/share/libctl")
-             "--enable-shared")
-       #:phases
-       (modify-phases %standard-phases
-         (add-before 'configure 'relax-gcc-14-strictness
-           (lambda _
-             (setenv "CFLAGS"
-                     (string-join
-                      (list "-Wno-error=incompatible-pointer-types"
-                            "-Wno-error=implicit-function-declaration"
-                            "-Wno-error=int-conversion")
-                      " ")))))))
+     (list
+      #:configure-flags
+      #~(list
+         (string-append "--with-libctl="
+                        #$(this-package-input "guile-libctl") "/share/libctl")
+         "--enable-shared")))
     (native-inputs
-     `(("fortran" ,gfortran)
-       ("pkg-config" ,pkg-config)
-       ("swig" ,swig-4.0)))
+     (list gfortran
+           pkg-config
+           swig-4.4))
     (inputs
-     `(("fftw" ,fftw)
-       ("gsl" ,gsl)
-       ("guile" ,guile-2.2)
-       ("hdf5" ,hdf5)
-       ("openblas" ,openblas)
-       ("libctl" ,guile-libctl)
-       ("readline" ,readline)
-       ("zlib" ,zlib)))
-    (home-page "http://ab-initio.mit.edu/wiki/index.php/MIT_Photonic_Bands")
+     (list fftw
+           gsl
+           guile-3.0
+           guile-libctl
+           hdf5
+           openblas
+           readline
+           zlib))
+    (home-page "https://mpb.readthedocs.io/en/latest/")
     (synopsis "Computes band structures and electromagnetic modes of dielectric
 structures")
     (description
-     "MIT Photonic-Bands (MPB) computes definite-frequency eigenstates (harmonic modes)
-of Maxwell's equations in periodic dielectric structures for arbitrary wavevectors, using
-fully-vectorial and three-dimensional methods.")
+     "MIT Photonic-Bands (MPB) computes definite-frequency eigenstates
+(harmonic modes) of Maxwell's equations in periodic dielectric structures for
+arbitrary wavevectors, using fully-vectorial and three-dimensional methods.")
     (license license:gpl2+)))
 
 (define-public meep
   (package
     (name "meep")
-    (version "1.30.1")
+    (version "1.33.0")
     (source (origin
               (method url-fetch)
               (uri
@@ -1461,7 +1448,7 @@ fully-vectorial and three-dimensional methods.")
                 version "/meep-" version ".tar.gz"))
               (sha256
                (base32
-                "1h80d7i7v06fxfdsa496b542dvr105c4v1n7pk8m3jssvbxvv2a0"))))
+                "1azhgz6s95siqmnxb3if6waxbvia3bij5jmxgxjz4sgn2ahw1axx"))))
     (build-system gnu-build-system)
     (arguments
      (list #:configure-flags
@@ -1471,11 +1458,11 @@ fully-vectorial and three-dimensional methods.")
     (native-inputs
      (list gfortran
            pkg-config
-           swig-4.0))
+           swig-4.4))
     (inputs
      (list fftw
            gsl
-           guile-2.2
+           guile-3.0
            guile-libctl
            harminv
            hdf5
@@ -1685,7 +1672,7 @@ multiple services and devices with hundreds of supported integrations.")
 (define-public python-esptool
   (package
     (name "python-esptool")
-    (version "5.0.2")
+    (version "5.2.0")
     (source
      (origin
        (method git-fetch)
@@ -1694,7 +1681,7 @@ multiple services and devices with hundreds of supported integrations.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1wl75j6ncm5lahy9pzc38qivhaf9p42a2bijishdkwkw388fs6x1"))))
+        (base32 "0rgwa7mimznwkn8ql17yxwxsfp0is3i75y7bf62mgsxjyx7zawcd"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -1730,7 +1717,7 @@ bootloader in Espressif ESP8266 & ESP32 series chips.")
 (define-public radare2
   (package
     (name "radare2")
-    (version "6.1.2")                   ;keep in sync with iaito
+    (version "6.1.4")                   ;keep in sync with iaito
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1738,7 +1725,7 @@ bootloader in Espressif ESP8266 & ESP32 series chips.")
                     (commit version)))
               (sha256
                (base32
-                "1d4sslhjxm00fchqcszfa59wf51v632jvf7aj4af0vdhl9f9n8k2"))
+                "0gq90rwwmkfc7v1rhyr3lw859rsm1ryhzrwidhhh6pbp6jv03k6w"))
               (file-name (git-file-name name version))
               (patches
                (search-patches "radare2-fix-meson-build-to-use-sys-sdb.patch"
@@ -1794,6 +1781,10 @@ bootloader in Espressif ESP8266 & ESP32 series chips.")
     (propagated-inputs
      ;; In the Libs: section of r_hash.pc.
      (list xxhash))
+    (native-search-paths (list (search-path-specification
+                                 (variable "R2_LIBR_PLUGINS")
+                                 (files (list "lib/radare2"))
+                                 (separator #f)))) ;single value
     (home-page "https://radare.org/")
     (synopsis "Reverse engineering framework")
     (description
@@ -1811,24 +1802,183 @@ like relocation symbols.  It is able to deal with malformed binaries, making
 it suitable for security research and analysis.")
     (license license:lgpl3)))
 
-(define-public rayforge
+(define-public r2ghidra
   (package
-    (name "rayforge")
-    (version "1.0.2")
+    (name "r2ghidra")
+    (version "6.1.4")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
-             (url "https://github.com/barebaric/rayforge")
-             (commit version)))
+              (url "https://github.com/radareorg/r2ghidra")
+              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1c6dl0x3pafmh4p533jbk2cj73q90vz1797jya3hzzxdv0h383yc"))))
+        (base32 "04x7vmg67zz0llkz3r3nmcky5z8c4ha31z8jzkm19dnyslw2qlxr"))
+       (modules '((guix build utils)))
+       (snippet
+        ;; Delete bundled libs and remove their references.
+        #~(begin (delete-file-recursively "subprojects")
+                 (substitute* "ghidra/deps.mk"
+                   (("ZLIB_LDFLAGS=.*") "")
+                   (("ZLIB_CFLAGS=.*") ""))
+                 (substitute* "src/Makefile"
+                   (("(all:) subprojects-zlib" _ f) f)
+                   (("PUGIXML_OBJS=.*") "")
+                   (("PUGIXML_SRCS=.*") "")
+                   (("PUGIXML_CFLAGS=.*") ""))))))
+    (build-system gnu-build-system)
+    (arguments
+     (list
+      #:make-flags
+      #~(let* ((zlib #$(this-package-input "zlib"))
+               (pugixml #$(this-package-input "pugixml-next")))
+          (list (string-append "CC=" #$(cc-for-target))
+                (format #f "ZLIB_LDFLAGS=-L~a/lib/ -lz" zlib)
+                (format #f "LDFLAGS=-L~a/lib/ -lpugixml" pugixml)
+                (format #f "ZLIB_CFLAGS=-I~a/include/" zlib)
+                (format #f "PUGIXML_CFLAGS=-I~a/include/" pugixml)
+                ;; Ensure this matches R2_LIBR_PLUGINS as exported
+                ;; by radare2 & iaito.
+                (format #f "PLUGDIR=~a/lib/radare2" #$output)))
+      #:tests? #f    ;no 'check' rule, test dir may require 3rd-party binaries
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'skip-git-and-copy-ghidra
+            (lambda _
+              ;; GIT is assumed to point to the git binary, but it is
+              ;; only checked to be a file; this short-circuits the check.
+              (setenv "GIT" "configure")
+              (copy-recursively
+               (search-input-directory %build-inputs "share/ghidra-native")
+               "subprojects/ghidra-native")))
+          (add-before 'build 'set-system-sleighhome
+            ;; Helper files which try to install in radare2's path
+            ;; in the store, irrespective of PLUGDIR.  As long as
+            ;; r2ghidra knows where to find them, we can place them
+            ;; anywhere.
+            (lambda _
+              (let ((sleighhome
+                     (in-vicinity #$output "lib/radare2/sleighhome")))
+                ;; Hardcoded path to check.
+                (substitute* "src/SleighAsm.cpp"
+                  (("(path = strdup \\()[^\\)]*" _ f)
+                   (string-append f "\"" sleighhome "\"")))
+                ;; Install location.
+                (substitute* "ghidra/Makefile"
+                  (("(sleigh-install D=\")\\$\\(DD\\)" _ f)
+                   (string-append f sleighhome)))))))))
+    (inputs
+     (list capstone
+           libuv
+           libzip
+           lz4
+           openssl
+           pugixml-next
+           radare2
+           sdb
+           zlib))
+    (native-inputs
+     (list ghidra-native
+           pkg-config
+           python-minimal))
+    (home-page "https://www.radare.org/")
+    (synopsis "Native Ghidra Decompiler for radare2")
+    (description
+     "r2ghidra is a radare2 plugin which integrates the
+ @url{https://www.nsa.gov/ghidra,Ghidra} decompiler.")
+    ;; Specified lgpl3 'only' in README.
+    (license license:lgpl3)))
+
+(define-public ghidra-native
+  ;; Latest commit; last release (8/2025) incompatible with current r2ghidra.
+  (let ((commit "df065bad0f9e7cea233479048681f811c4f640a2")
+        (revision "1"))
+    (package
+      (name "ghidra-native")
+      (version (git-version "0.6.2" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+                (url "https://github.com/radareorg/ghidra-native")
+                (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "14bzrl856x3bsqjpks85rzxcxncfmnjwc5knv2h4lybfz4bxcn39"))))
+      (build-system gnu-build-system)
+      (arguments
+       (list
+        #:tests? #f                     ;no tests
+        #:make-flags #~(list "patch")
+        #:phases
+        #~(modify-phases %standard-phases
+            (delete 'configure)
+            (replace 'install           ;no install target
+              (lambda _
+                (let ((ghidra-native-patched
+                       (in-vicinity #$output "/share/ghidra-native/src")))
+                  (copy-recursively "src" ghidra-native-patched)))))))
+      (home-page "https://www.radare.org/")
+      (synopsis "Native parts of ghidra")
+      (description
+       "This package contains the native parts of ghidra, to be used from
+r2ghidra.")
+      (properties '((hidden? . #t)))    ;only provides source files
+      (license license:asl2.0))))
+
+(define-public rayforge
+  (package
+    (name "rayforge")
+    (version "1.7.7")   ;newer version requires python-raygeo (Rust)
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/barebaric/rayforge")
+              (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1w44qw51nynf1rk61y0d0wj6xl66ciswpcsp38dnwrpfwsqgafxw"))))
     (build-system pyproject-build-system)
+    (arguments
+     (list
+      ;; tests: 1626 passed
+      #:test-flags
+      ;; XXX: Tests fail to pick exact version of cairo: E gi.RepositoryError:
+      ;; Typelib file for namespace 'cairo', version '1.0' not found
+      #~(list "--ignore=tests/core/geo/test_font_config.py"
+              "--ignore=tests/core/geo/test_geo_text.py"
+              "--ignore=tests/core/geo/test_geometry.py"
+              "--ignore=tests/core/geo/test_text.py"
+              "--ignore=tests/core/geo/test_transform.py"
+              ;; XXX: Projects ships a huge test suite which the majority
+              ;; fail, run bare minimal core tests.
+              "tests/core")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'relax-requirements
+            (lambda _
+              ;; All of the dependencies are pined to exact version.
+              (substitute* "requirements.txt"
+                (("[=~]=.*") "\n")
+                ;; XXX: Guix's opencv package does not provide Python's
+                ;; version metadata.
+                (("opencv_python") ""))))
+          (add-before  'sanity-check 'set-home
+            (lambda _
+              (setenv "HOME" "/tmp")))
+          (add-before 'check 'remove-local-source
+            (lambda _
+              (delete-file-recursively "rayforge")))
+          (add-after 'wrap 'wrap-rayforge
+            (lambda _
+              (wrap-program (string-append #$output "/bin/rayforge")
+                `("GI_TYPELIB_PATH" ":" prefix
+                  (,(getenv "GI_TYPELIB_PATH")))))))))
     (native-inputs (list python-gitpython
                          python-pytest
                          python-pytest-asyncio
-                         python-pytest-cov
                          python-pytest-mock
                          python-setuptools))
     (inputs (list bash-minimal
@@ -1838,54 +1988,27 @@ it suitable for security research and analysis.")
                   python-asyncudp
                   python-blinker
                   python-ezdxf
+                  python-gitpython
                   python-numpy
                   python-platformdirs
+                  python-pluggy
                   python-pycairo
                   python-pyclipper
                   python-pygobject
+                  python-pymupdf
                   python-pyopengl
                   python-pyopengl-accelerate
                   python-pypdf
-                  python-pyserial-asyncio
+                  python-pyserial
                   python-pyvips
                   python-pyyaml
                   python-scipy
                   python-semver
                   python-svgelements
+                  python-trimesh
                   python-websockets
                   vtracer))
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'write-version-file
-            (lambda _
-              (call-with-output-file "rayforge/version.txt"
-                (lambda (port)
-                  (display #$version port)))
-              (let ((port (open-file "MANIFEST.in" "a")))
-                (display "include rayforge/version.txt\n" port)
-                (close-port port))))
-          (add-after 'unpack 'fix-tests
-            (lambda _
-              (mkdir "tmp-home")
-              (setenv "HOME"
-                      (string-append (getcwd) "/tmp-home"))
-              ;; Fix abstract class test for older Python error message format
-              (substitute* "tests/pipeline/stage/test_base_stage.py"
-                (("without an implementation for abstract method 'reconcile'")
-                 "abstract method '?reconcile'?"))
-              ;; Fix arc fitting test: add looser tolerance for floating point comparison
-              (substitute* "tests/core/geo/test_fitting.py"
-                (("(assert np\\.allclose\\(.*, \\(-10\\.0, 0\\.0\\))" match)
-                 (string-append match ", atol=1e-3")))))
-          (delete 'sanity-check) ; Tests against python package version of rayforge
-          (add-after 'wrap 'wrap-rayforge
-            (lambda _
-              (wrap-program (string-append #$output "/bin/rayforge")
-                `("GI_TYPELIB_PATH" ":" prefix
-                  (,(getenv "GI_TYPELIB_PATH")))))))))
-    (home-page "https://github.com/barebaric/rayforge")
+    (home-page "https://rayforge.org/")
     (synopsis "Desktop application for laser cutting and engraving")
     (description
      "Rayforge is a cross-platform 2D CAD and G-code control software designed
@@ -2011,7 +2134,7 @@ high-performance parallel differential evolution (DE) optimization algorithm.")
 (define-public gpx
   (package
     (name "gpx")
-    (version "2.5.2")
+    (version "2.6.8")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -2020,7 +2143,7 @@ high-performance parallel differential evolution (DE) optimization algorithm.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1yab269x8qyf7rd04vaxyqyjv4pzz9lp4sc4dwh927k23avr3rw5"))))
+                "1izs8s5npkbfrsyk17429hyl1vyrbj9dp6vmdlbb2vh6mfgl54h8"))))
     (build-system gnu-build-system)
     (home-page "https://github.com/markwal/GPX")
     (synopsis "Converting gcode to x3g files for 3D printing")
@@ -2135,7 +2258,7 @@ specification can be downloaded at @url{http://3mf.io/specification/}.")
 (define-public manifold
   (package
     (name "manifold")
-    (version "3.3.2")
+    (version "3.4.1")
     (source
      (origin
        (method git-fetch)
@@ -2144,7 +2267,7 @@ specification can be downloaded at @url{http://3mf.io/specification/}.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0bq1gzvhyp0b9v0q6magwf0yi9lzqgh3fj9104wqfvpl2skgzkg7"))))
+        (base32 "0x65708r6xln8sd53abbn1qnhz3wxnicn2837ida73ihargk5js1"))))
     (build-system cmake-build-system)
     (inputs (list onetbb clipper2 assimp python-nanobind googletest))
     (arguments
@@ -2367,7 +2490,6 @@ Newton-Raphson power flow solvers in the C++ library lightsim2grid, and the
                          python-networkx
                          python-openpyxl
                          python-pytest
-                         python-pytest-cov ; --cov runs by default on skrf
                          python-pytest-mock
                          python-pyvisa
                          python-setuptools
@@ -2642,7 +2764,7 @@ but also adds new features and improves existing ones.")
 (define-public emacs-scad-mode
   (package
     (name "emacs-scad-mode")
-    (version "98.0")
+    (version "99.0")
     (source
      (origin
        (method git-fetch)
@@ -2650,9 +2772,10 @@ but also adds new features and improves existing ones.")
              (url "https://github.com/openscad/emacs-scad-mode")
              (commit version)))
        (sha256
-        (base32 "19mn6z98c8s7mspa7j8xw7za33gmpsy4iw2r9xiggdv7yh6mh8h8"))
+        (base32 "0mqfvff8f7lqjviwz30j7vkb098xd0k8bdzznb77aw4q7gdsf8nm"))
        (file-name (git-file-name name version))))
     (build-system emacs-build-system)
+    (arguments (list #:tests? #f))    ; no tests
     (propagated-inputs (list emacs-compat))
     (synopsis "Emacs mode to edit OpenSCAD files")
     (description
@@ -2901,20 +3024,22 @@ interpolation toolkit.")
 (define-public python-motulator
   (package
     (name "python-motulator")
-    (version "0.5.0")
+    (version "0.6.2")
     (source
      (origin
-       (method url-fetch)
-       (uri (pypi-uri "motulator" version))
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/Aalto-Electric-Drives/motulator/")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "1kh13zfa4w73q04pny2w2zgym47fp8xy7glwfx82fdx4fihk7dv7"))))
+        (base32 "1di2r1i19jl751v0hj426zkwk48w5yf8zpw2bl6qzk0vq4z2vpbw"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:tests? #f)) ; there are no tests
-    (propagated-inputs (list python-matplotlib python-numpy python-scipy))
-    (native-inputs (list python-hatchling
-                         python-ipykernel
-                         python-toml))
+    (propagated-inputs
+     (list python-numpy python-matplotlib python-scipy python-tqdm))
+    (native-inputs (list python-hatchling))
     (home-page "https://aalto-electric-drives.github.io/motulator/")
     (synopsis "Motor Drive Simulator in Python")
     (description "This package includes simulation models for an induction
@@ -2927,7 +3052,7 @@ Runge-Kutta method of order 5(4) from @code{scipy.integrate.solve_ivp.}")
 (define-public cgns
   (package
     (name "cgns")
-    (version "4.3.0")
+    (version "4.5.2")
     (source
      (origin
        (method git-fetch)
@@ -2936,7 +3061,7 @@ Runge-Kutta method of order 5(4) from @code{scipy.integrate.solve_ivp.}")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0jig1y7lv9qk1ri2gqws7ffpajmhxnank7gbyna9hfaghsxdlnvd"))))
+        (base32 "0r8y6lddp7q9nb6804c6bbr4y0pv7ssdzi9m5ddx50ksvfv382fw"))))
     (build-system cmake-build-system)
     (arguments
      (list #:configure-flags
@@ -3969,7 +4094,7 @@ G-codes to binary and vice versa.")
      (list bash-minimal
            boost-1.83
            cereal
-           cgal
+           cgal-5
            curl
            dbus
            eigen
@@ -4058,10 +4183,6 @@ BOM creation and has a lot of extra features.")
        (sha256
         (base32 "19fi0y0lk45cyampczgh3kz2swai4zcgzkffp0xf5h55rxxrdpvk"))))
     (build-system cmake-build-system)
-    (inputs
-     (list protobuf
-           python
-           python-sip-4))
     (arguments
      `(#:tests? #f
        #:configure-flags '("-DBUILD_EXAMPLES=OFF")
@@ -4082,6 +4203,11 @@ BOM creation and has a lot of extra features.")
                                  (package-version python))
                                "/site-packages"
                                " Python3_SITEARCH"))))))))
+    (inputs
+     (list protobuf
+           python
+           python-sip-4))
+    (native-inputs (list python-setuptools))
     (home-page "https://github.com/Ultimaker/libArcus")
     (synopsis "Communication library for Ultimaker software components")
     (description "This library contains C++ code and Python3 bindings for
@@ -4300,15 +4426,6 @@ problem.  It was inspired from the SVGNest Javascript library.")
        (sha256
         (base32 "0jhqfylg6vzlbz9rqs981bg6y8s18iklw1p8hmax72xq2c7561s1"))))
     (build-system cmake-build-system)
-    (native-inputs
-     (list pkg-config))
-    (inputs
-     (list boost
-           clipper
-           libnest2d-for-cura
-           nlopt
-           python
-           python-sip-4))
     (arguments
      `(#:tests? #f
        #:phases
@@ -4328,6 +4445,16 @@ problem.  It was inspired from the SVGNest Javascript library.")
                   (string-append path " Python3_SITEARCH"))
                  (("\\$\\{_process_output\\} Python3_SITELIB")
                   (string-append path " Python3_SITELIB")))))))))
+    (native-inputs
+     (list pkg-config
+           python-setuptools))
+    (inputs
+     (list boost
+           clipper
+           libnest2d-for-cura
+           nlopt
+           python
+           python-sip-4))
     (home-page "https://github.com/Ultimaker/pynest2d")
     (synopsis "Python bindings for libnest2d")
     (description
@@ -4372,8 +4499,6 @@ belongs to the Cura project from Ultimaker.")
        (sha256
         (base32 "1cq85x0xizsjwf9nl7v7x4i9vl335mgv2lda3q2c9fcwrndsc3wk"))))
     (build-system cmake-build-system)
-    (inputs
-     (list python python-sip-4))
     (arguments
      `(#:tests? #f ; No test suite.
        #:phases
@@ -4390,6 +4515,8 @@ belongs to the Cura project from Ultimaker.")
                   (string-append path " Python3_SITEARCH"))
                  (("\\$\\{_process_output\\} Python3_SITELIB")
                   (string-append path " Python3_SITELIB")))))))))
+    (inputs (list python python-sip-4))
+    (native-inputs (list python-setuptools))
     (home-page "https://github.com/Ultimaker/libSavitar")
     (synopsis "C++ implementation of 3mf loading with SIP python bindings")
     (description "LibSavitar is a C++ implementation of 3mf loading with SIP
@@ -4832,7 +4959,9 @@ and mogan.")
                (("'\" [+] python_path [+]")
                 (string-append "'\" + std::string(\""
                                (assoc-ref outputs "out")
-                               "/lib/python3.11/site-packages"
+                               "/lib/python"
+                               #$(version-major+minor (package-version python))
+                               "/site-packages"
                                "\") +")))))
           (add-before 'check 'prepare-checks
             (lambda _