gnu: node-lts: Update to 24.14.1.

* gnu/packages/node.scm (node-lts): Update to 24.14.1.

Change-Id: I60457e8e8e05e0102feb450655113ba410bd7667

.dir-locals.el

@@ -42,13 +42,9 @@
      ;; For use with 'bug-reference-prog-mode'.  Extra bug-reference
      ;; configuration should be done in your Emacs user configuration file;
      ;; refer to (info (guix) The Perfect Setup).
-     (eval . (setq-local
-              ;; #8545, guix/guix#8545, guix/guix!8545, but not !8545
-              bug-reference-bug-regexp
-              (rx (group (or (seq (zero-or-more "guix/guix") "#")
-                             (seq (one-or-more "guix/guix") "!"))
-                         (group (one-or-more digit))))))
-     (bug-reference-url-format . "https://codeberg.org/guix/guix/issues/%s")
+     (bug-reference-bug-regexp
+      . "\\(<https?://\\bugs\\.gnu\\.org/\\([0-9]+\\)>\\)")
+     (bug-reference-url-format . "https://issues.guix.gnu.org/%s")
 
      (eval . (add-to-list 'completion-ignored-extensions ".go"))
 

CODEOWNERS

@@ -32,7 +32,6 @@ gnu/packages/assembly\.scm                         @guix/build-tools
 gnu/packages/autogen\.scm                          @guix/build-tools
 gnu/packages/autotools\.scm                        @guix/build-tools
 gnu/packages/bison\.scm                            @guix/build-tools
-gnu/packages/compiler-tools\.scm                   @guix/build-tools
 gnu/packages/m4\.scm                               @guix/build-tools
 gnu/packages/oyacc\.scm                            @guix/build-tools
 gnu/packages/re2c\.scm                             @guix/build-tools
@@ -162,8 +161,6 @@ gnu/system/examples/bare-bones\.tmpl               @guix/documentation
 gnu/system/examples/lightweight-desktop\.tmpl      @guix/documentation
 gnu/system/examples/desktop\.tmpl                  @guix/documentation
 
-gnu/packages/dotnet\.scm                           @guix/dotnet
-
 gnu/packages/electronics\.scm                      @guix/electronics
 gnu/packages/hdl\.scm                              @guix/electronics
 gnu/packages/libftdi\.scm                          @guix/electronics
@@ -341,7 +338,6 @@ guix/build-system/rakudo\.scm                      @guix/perl
 guix/import/cpan\.scm                              @guix/perl
 guix/scripts/import/cpan\.scm                      @guix/perl
 
-gnu/packages/aux-files/python/.*\.py$              @guix/python
 gnu/packages/django\.scm                           @guix/python
 gnu/packages/jupyter\.scm                          @guix/python
 gnu/packages/python(-.+|)\.scm$                    @guix/python

Makefile.am

@@ -488,7 +488,6 @@ AUX_FILES =						\
   gnu/packages/aux-files/linux-libre/5.10-x86_64.conf	\
   gnu/packages/aux-files/ovmf/51-edk2-ovmf-2m-raw-x64-nosb.json	\
   gnu/packages/aux-files/pack-audit.c			\
-  gnu/packages/aux-files/python/pytest_guix.py		\
   gnu/packages/aux-files/python/sanity-check.py		\
   gnu/packages/aux-files/python/sitecustomize.py	\
   gnu/packages/aux-files/renpy/renpy.in	\

doc/build.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2019-2026 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2019-2025 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 ;;; Copyright © 2022 Maxim Cournoyer <maxim@guixotic.coop>
 ;;; Copyright © 2025 Florian Pelz <pelzflorian@pelzflorian.de>
@@ -324,31 +324,17 @@ actual file name."
                     ((('span ('@ ('class "category")) ;raw Texinfo 6.8
                              (? string-or-entity?) ...) rest ...)
                      #t)
-                    ((('span                      ;Texinfo 6, post-processed
-                       ('@ ('class "symbol-definition-category"))
-                       (? string-or-entity?) ...) rest ...)
-                     #t)
-                    ((('span                      ;Texinfo 7
-                       ('@ ('class "category-def")) _ ...)
-                      ('span ('strong ('@ ('class "def-name")) _ ...)
-                             _ ...)
-                      rest ...)
+                    ((('span ('@ ('class "symbol-definition-category"))
+                             (? string-or-entity?) ...) rest ...)
                      #t)
                     (x
                      #f))))
 
-              (define (definition-class? class)
-                ;; Return true for "deffn def-line", "deftp def-line", etc.
-                (string-suffix? " def-line" class))
-
               (let ((shtml (call-with-input-file file html->shtml)))
                 (let loop ((shtml shtml)
                            (anchors anchors))
                   (match shtml
-                    ((or ('dt ('@ ('id id) _ ...) rest ...)      ;Texinfo 6
-                         ('dt ('@ ('class (? definition-class?)) ;Texinfo 7
-                                  ('id id))
-                              rest ...))
+                    (('dt ('@ ('id id) _ ...) rest ...)
                      (if (and (string-prefix? "index-" id)
                               (worthy-entry? rest))
                          (alist-cons (anchor-id->key id)
@@ -519,16 +505,10 @@ its <pre class=\"lisp\"> blocks (as produced by 'makeinfo --html')."
                    (loop rest (cons str strings)))
                   ((('*ENTITY* "additional" entity) . rest)
                    (loop rest (cons (entity->string entity) strings)))
-                  ((('*ENTITY* "additional-char" entity) . rest)
-                   (loop rest (cons (string
-                                     (integer->char (string->number entity)))
-                                    strings)))
                   ((('span _ lst ...) . rest)     ;for <span class="roman">
                    (loop (append lst rest) strings))
-                  ((('var ('@ _) name) . rest)    ;for @var{name} within @lisp
+                  ((('var name) . rest)           ;for @var{name} within @lisp
                    (loop rest (cons name strings))) ;XXX: losing formatting
-                  ((('var name) . rest)           ;likewise (Texinfo 6)
-                   (loop rest (cons name strings)))
                   (something
                    (pk 'unsupported-code-snippet something)
                    (primitive-exit 1)))))
@@ -557,10 +537,7 @@ its <pre class=\"lisp\"> blocks (as produced by 'makeinfo --html')."
                           (link (@ (rel "stylesheet")
                                    (type "text/css")
                                    (href #$syntax-css-url)))))
-                  ((or ('pre ('@ ('class "lisp")) ;Texinfo 6
-                             code-snippet ...)
-                       ('pre ('@ ('class "lisp-preformatted"))
-                             code-snippet ...))
+                  (('pre ('@ ('class "lisp")) code-snippet ...)
                    `(pre (@ (class "lisp"))
                          ,@(highlights->sxml*
                             (pair-open/close
@@ -568,16 +545,14 @@ its <pre class=\"lisp\"> blocks (as produced by 'makeinfo --html')."
                                         (concatenate-snippets code-snippet)))
                             anchors)))
 
-                  ;; For Texinfo 6: Replace the ugly <strong> used for @deffn
-                  ;; etc., which translate to <dt>, with more stylable
-                  ;; markup.  No such post-processing is needed for @deffn
-                  ;; with Texinfo 7.
+                  ;; Replace the ugly <strong> used for @deffn etc., which
+                  ;; translate to <dt>, with more stylable markup.
                   (('dt ('@ ('id id))             ;raw Texinfo 6.8
                         ('span ('@ ('class "category")) category ...)
                         ('span ('strong thing)
                                anchor))
                    (highlight-definition id category thing '()))
-                  (('dt ('@ ('id id))             ;ditto
+                  (('dt (@ ('id id))
                         ('span ('@ ('class "category")) category ...)
                         ('span ('strong thing)
                                (? space?) ('em args ...)
@@ -833,9 +808,16 @@ in SOURCE."
                 (match sxml
                   (('*TOP* decl body ...)
                    `(*TOP* ,decl ,@(map loop body)))
-                  ((or ('body ('@ _) elements ...)
-                       ('body elements ...))
-                   `(body ,(navigation-bar
+                  (('head elements ...)
+                   ;; Add reference to our own manual CSS, which provides
+                   ;; support for the language menu.
+                   `(head ,@elements
+                          (link (@ (rel "stylesheet")
+                                   (type "text/css")
+                                   (href #$manual-css-url)))))
+                  (('body ('@ attributes ...) elements ...)
+                   `(body (@ ,@attributes)
+                          ,(navigation-bar
                             ;; TODO: Add "Contribute" menu, to report
                             ;; errors, etc.
                             (list (menu-dropdown
@@ -970,12 +952,12 @@ makeinfo OPTIONS."
                         (mkdir-p (string-append #$output "/"
                                                 (normalize language)))
                         (setenv "LANGUAGE" language)
-                        (apply invoke #$(file-append texinfo-7 "/bin/makeinfo")
+                        (apply invoke #$(file-append texinfo "/bin/makeinfo")
                                "-o" (string-append #$output "/"
                                                    (normalize language)
                                                    "/html_node")
                                opts)
-                        (apply invoke #$(file-append texinfo-7 "/bin/makeinfo")
+                        (apply invoke #$(file-append texinfo "/bin/makeinfo")
                                "--no-split"
                                "-o"
                                (string-append #$output "/"
@@ -1427,7 +1409,7 @@ commit date (an integer)."
                                  (string-append #+tar "/bin:"
                                                 #+xz "/bin:"
                                                 #+zstd "/bin:"
-                                                #+texinfo-7 "/bin"))
+                                                #+texinfo "/bin"))
                          (invoke "tar" "xf" #$(package-source guile))
                          (mkdir-p (string-append #$output "/en/html_node"))
 
@@ -1446,7 +1428,7 @@ commit date (an integer)."
                               (string-append #$output "/en/html_node")))))))))
 
 (define %guile-manual-base-url
-  "https://doc.guix.gnu.org/guile/latest/en")
+  "https://www.gnu.org/software/guile/manual")
 
 (define (for-all-languages index)
   (map (lambda (language)

doc/contributing.texi

@@ -706,7 +706,13 @@ Manual}).  To set it up, enable it in the relevant modes:
 
 When working from a Git checkout of Guix, setup is automatic:
 @code{bug-reference} automatically detects that the project is hosted on
-Codeberg and infers the issue and pull request URL from there.
+Codeberg@footnote{
+@c 'vc-git-repository-url' is used by
+@c 'bug-reference-setup-from-vc-alist', which checks for one of these
+@c names for the remote.
+As of Emacs@tie{}30.2, auto-detection works if and
+only if the Git remote is called @code{upstream} or @code{origin}.} and
+infers the issue and pull request URL from there.
 
 @node Guile Studio
 @subsection Guile Studio

doc/guix-cookbook.texi

@@ -646,11 +646,9 @@ This field contains a description of the source code origin.  The
 
 @enumerate
 @item  The method, here @code{url-fetch} to download via HTTP/FTP, but other methods
-    exist, such as @code{git-fetch} for Git repositories.  @xref{origin
-    Reference,,, guix, GNU Guix Reference Manual}, for more info on the
-    available download methods.
+    exist, such as @code{git-fetch} for Git repositories.
 @item  The URI, which is typically some @code{https://} location for @code{url-fetch}.  Here
-    the special @code{mirror://gnu} refers to a set of well known locations, all of
+    the special `mirror://gnu` refers to a set of well known locations, all of
     which can be used by Guix to fetch the source, should some of them fail.
 @item  The @code{sha256} checksum of the requested file.  This is essential to ensure
     the source is not corrupted.  Note that Guix works with base32 strings,
@@ -1118,8 +1116,7 @@ Let's discuss those fields in depth.
 @subsubsection @code{git-fetch} method
 
 Unlike the @code{url-fetch} method, @code{git-fetch} expects a @code{git-reference} which takes
-a Git repository and a commit (@pxref{origin Reference,,, guix, GNU Guix
-Reference Manual}).  The commit can be any Git reference such as
+a Git repository and a commit.  The commit can be any Git reference such as
 tags, so if the @code{version} is tagged, then it can be used directly.  Sometimes
 the tag is prefixed with a @code{v}, in which case you'd use @code{(commit (string-append
 "v" version))}.
@@ -1165,7 +1162,7 @@ Snippets might need additional Guile modules which can be imported from the
 
 There are 3 different input types.  In short:
 
-@table @code
+@table @asis
 @item native-inputs
 Required for building but not runtime -- installing a package
 through a substitute won't install these inputs.
@@ -1233,14 +1230,9 @@ It's advised to separate outputs only when you've shown it's worth it: if the
 output size is significant (compare with @code{guix size}) or in case the package is
 modular.
 
-@xref{Packages with Multiple Outputs,,, guix, GNU Guix Reference
-Manual}, for more info.
-
 @subsubsection Build system arguments
 
-The @code{arguments} is a keyword-value list used to configure the build
-process; these arguments are passed to the @dfn{build system}
-(@pxref{Build Systems,,, guix, GNU Guix Reference Manual}).
+The @code{arguments} is a keyword-value list used to configure the build process.
 
 The simplest argument @code{#:tests?} can be used to disable the test suite when
 building the package.  This is mostly useful when the package does not feature
@@ -1256,7 +1248,7 @@ following flags
                    "CC=gcc")
 @end lisp
 
-translate into:
+translate into
 
 @example
 $ make CC=gcc prefix=/gnu/store/...-<out>
@@ -1276,9 +1268,7 @@ Similarly, it's possible to set the configure flags:
 The @code{%build-inputs} variable is also generated in scope.  It's an association
 table that maps the input names to their store directories.
 
-The @code{phases} keyword lists the sequential steps of the build
-system.  @xref{Build Phases,,, guix, GNU Guix Reference Manual}, for
-details; in a nutshell,
+The @code{phases} keyword lists the sequential steps of the build system.  Typically
 phases include @code{unpack}, @code{configure}, @code{build}, @code{install} and @code{check}.  To know
 more about those phases, you need to work out the appropriate build system
 definition in @samp{$GUIX_CHECKOUT/guix/build/gnu-build-system.scm}:
@@ -1393,12 +1383,10 @@ Its return value is ignored.
 
 @subsubsection Code staging
 
-The astute reader may have noticed the hash-tilde and hash-dollar syntax in the
+The astute reader may have noticed the quasi-quote and comma syntax in the
 argument field.  Indeed, the build code in the package declaration should not be
 evaluated on the client side, but only when passed to the Guix daemon.  This
 mechanism of passing code around two running processes is called @uref{https://arxiv.org/abs/1709.00833, code staging}.
-@xref{G-Expressions,,, guix, GNU Guix Reference Manual}, for info on the
-this mechanism, which is called @dfn{g-expressions}.
 
 @subsubsection Utility functions
 
@@ -1407,7 +1395,7 @@ equivalent system invocations (@code{make}, @code{mkdir}, @code{cp}, etc.)@: com
 regular ``Unix-style'' installations.
 
 Some like @code{chmod} are native to Guile.
-@xref{File System,,, guile, Guile reference manual} for a complete list.
+@xref{,,, guile, Guile reference manual} for a complete list.
 
 Guix provides additional helper functions which prove especially handy in the
 context of package management.
@@ -1541,9 +1529,9 @@ The recursive importer won't import packages for which Guix already has package
 definitions, except for the very first.
 
 Not all applications can be packaged this way, only those relying on a select
-number of supported systems.
-@xref{Invoking guix import,,, guix, GNU Guix Reference Manual} for
-the full list of importers.
+number of supported systems.  Read about the full list of importers in
+the guix import section of the manual
+(@pxref{Invoking guix import,,, guix, GNU Guix Reference Manual}).
 
 @node Automatic update
 @subsubsection Automatic update
@@ -1563,9 +1551,6 @@ well:
 $ guix refresh hello --update
 @end example
 
-@xref{Invoking guix refresh,,, guix, GNU Guix Reference Manual}, for
-more info.
-
 @node Inheritance
 @subsubsection Inheritance
 
@@ -1590,9 +1575,7 @@ noticed that a significant number of them have a @code{inherit} field:
 
 All unspecified fields are inherited from the parent package.  This is very
 convenient to create alternative packages, for instance with different source,
-version or compilation options.  @xref{Defining Package Variants,,, guix,
-GNU Guix Reference Manual}, for a discussion of inheritance and of other
-ways to create package variants.
+version or compilation options.
 
 @node Getting help
 @subsection Getting help
@@ -1633,8 +1616,7 @@ hopefully we will see your contributions soon!
 
 @itemize
 @item
-@xref{Defining Packages,,, guix, GNU Guix Reference Manual}, for the
-@code{package} reference in the manual.
+The @uref{https://guix.gnu.org/manual/en/html_node/Defining-Packages.html, package reference in the manual}
 
 @item
 @uref{https://gitlab.com/pjotrp/guix-notes/blob/master/HACKING.org, Pjotr’s hacking guide to GNU Guix}

doc/guix.texi

@@ -49,7 +49,7 @@ Copyright @copyright{} 2017 humanitiesNerd@*
 Copyright @copyright{} 2017, 2021 Christine Lemmer-Webber@*
 Copyright @copyright{} 2017, 2018, 2019, 2020, 2021, 2022 Marius Bakke@*
 Copyright @copyright{} 2017, 2019, 2020, 2022 Hartmut Goebel@*
-Copyright @copyright{} 2017, 2019--2026 Maxim Cournoyer@*
+Copyright @copyright{} 2017, 2019--2025 Maxim Cournoyer@*
 Copyright @copyright{} 2017–2022 Tobias Geerinckx-Rice@*
 Copyright @copyright{} 2017 George Clemmer@*
 Copyright @copyright{} 2017 Andy Wingo@*
@@ -151,7 +151,6 @@ Copyright @copyright{} 2025 Noé Lopez@*
 Copyright @copyright{} 2026 David Elsing@*
 Copyright @copyright{} 2026 Nguyễn Gia Phong@*
 Copyright @copyright{} 2026 Yarl Baudig@*
-Copyright @copyright{} 2026 Joan Vilardaga Castro@*
 
 Permission is granted to copy, distribute and/or modify this document
 under the terms of the GNU Free Documentation License, Version 1.3 or
@@ -260,16 +259,11 @@ Installation
 * Application Setup::           Application-specific setup.
 * Upgrading Guix::              Upgrading Guix and its build daemon.
 
-Binary Installation
-
-* Installation with a pre-mounted store::
-
 Setting Up the Daemon
 
 * Build Environment Setup::     Preparing the isolated build environment.
 * Daemon Offload Setup::        Offloading builds to remote machines.
 * SELinux Support::             Using an SELinux policy for the daemon.
-* AppArmor Support::            Using an AppArmor profile for the daemon.
 
 System Installation
 
@@ -486,14 +480,12 @@ Home Services
 * GPG: GNU Privacy Guard.       Setting up GPG and related tools.
 * Desktop: Desktop Home Services.  Services for graphical environments.
 * Guix: Guix Home Services.     Services for Guix.
-* Backup: Backup Home Services.  Services for backing up User's files.
+* Backup: Backup Home Services.   Services for backing up User's files.
 * Fonts: Fonts Home Services.   Services for managing User's fonts.
 * Sound: Sound Home Services.   Dealing with audio.
 * Mail: Mail Home Services.     Services for managing mail.
 * Messaging: Messaging Home Services.  Services for managing messaging.
 * Media: Media Home Services.   Services for managing media.
-* mpv Media Player::
-* Niri: Niri window manager.    Setting up the Niri.
 * Sway: Sway window manager.    Setting up the Sway configuration.
 * Networking: Networking Home Services.  Networking services.
 * Secrets: Secrets Home Services.  Services for storing secrets.
@@ -884,40 +876,6 @@ installation script or @i{via} the native package manager of their
 foreign distribution, to also regularly read and follow security
 notices, as shown by @command{guix pull}.
 
-@menu
-* Installation with a pre-mounted store::
-@end menu
-
-@node Installation with a pre-mounted store
-@subsection Installation with a pre-mounted store
-
-@cindex pre-mounted store, installation on small root file system
-@cindex bind mounted store, binary installation
-@cindex binary installation using an alternative storage device
-If you need to install Guix on a system whose main file system is too
-small (as can be the case for the rescue environments of @acronym{VPS,
-Virtual Private Servers}, for example), you may need to expose the
-@file{/gnu} directory from a different storage device/partition.  This
-can be achieved by mounting a secondary partition or directory at
-@file{/gnu}, via a bind mount for example.  In the bind mount case,
-assuming the partition that should be used to hold the content of the
-store is mounted at @file{/mnt}, you could proceed like this
-@emph{before} starting the installation:
-
-@example
-mkdir /mnt/gnu
-mkdir /gnu
-mount --bind /mnt/gnu /gnu
-@end example
-
-@quotation Important
-If your foreign distribution uses systemd, do not attempt to mount
-directly on the store directory, @file{/gnu/store}, as this would
-conflict with the @file{gnu-store.mount} systemd unit and cause the
-@file{guix-daemon.service} to unmount it before starting, failing its
-execution.  Mount on @file{/gnu} instead.
-@end quotation
-
 @node Setting Up the Daemon
 @section Setting Up the Daemon
 
@@ -4822,94 +4780,14 @@ These options are provided for convenience, but you can also specify your
 configuration in the @file{~/.config/guix/channels.scm} file or using the
 @option{--channels} option (see below).
 
-@item --channels=@var{file-or-uri}
-@itemx -C @var{file-or-uri}
-Read the list of channels from @var{file-or-uri} instead of
+@item --channels=@var{file}
+@itemx -C @var{file}
+Read the list of channels from @var{file} instead of
 @file{~/.config/guix/channels.scm} or @file{/etc/guix/channels.scm}.
-@var{file-or-uri} must contain Scheme code that
+@var{file} must contain Scheme code that
 evaluates to a list of channel objects.  @xref{Channels}, for more
 information.
 
-As you can guess, @var{file-or-uri} can be a URL, in which case the
-given channels file is transparently downloaded.  In the example below,
-we pull from the latest revision of Guix that was successfully
-evaluated:
-
-@example
-guix pull \
-  -C https://ci.guix.gnu.org/eval/latest/channels.scm?spec=master
-@end example
-
-@cindex SWHID, for channel files
-Alternatively, you can refer to a channel file by its
-@uref{https://swhid.org,Software Hash Identifier}, or SWHID, which
-uniquely and unambiguously identifies contents, as in this example:
-
-@example
-guix pull \
-  -C swh:1:cnt:ae02d8ba3538a385ee799e61cdd0dfc5e14a8d1b
-@end example
-
-This command downloads the data designated by the given identifier from
-@uref{https://archive.softwareheritage.org, the Software Heritage
-archive}.
-
-@anchor{trusted-channels}
-@cindex trusted channels, for downloaded channel files
-In both cases, the command errors out if the returned channels are not
-among the user's @dfn{trusted channels}, defined as:
-
-@itemize
-@item
-the channels returned by @file{~/.config/guix/trusted-channels.scm},
-which has the same format as any channel file (these channels
-@emph{must} have an ``introduction'', @pxref{Channel Authentication};
-channels are identified by their introduction and other fields are
-ignored, including @code{url} and @code{name});
-
-@item
-or, if the above file doesn't exist, the currently-used channels as
-returned by @command{guix describe}.
-@end itemize
-
-@item --allow-untrusted-channels[=yes|no]
-Whether to allow pulls from untrusted channels.
-
-By default, @command{guix pull} aborts when downloading a channel file
-that specifies an untrusted channel and merely warns if the list of
-channels comes from a local file.  This option allows you to change
-that.
-
-@quotation Warning
-Allowing untrusted channels can effectively lead to arbitrary code
-execution on your system.
-@end quotation
-
-@anchor{unsafe-channel-evaluation}
-@item --unsafe-channel-evaluation
-Allow arbitrary code execution from channel files, both the default
-@file{channels.scm} files and those passed with @option{--channels} as
-mentioned above.
-
-@cindex sandboxing, of channel evaluation
-By default, channel files are evaluated in an isolated ``sandbox''
-where only trivial declarative code returning a list of channels is
-allowed---calls to procedures such as @code{list}, @code{cons},
-@code{string-append}, as well as the @code{channel} constructor.
-Attempts from a channel file to access unauthorized bindings such as
-@code{system} (to run shell code) or to use additional modules with
-@code{use-modules} are impossible.
-
-The @option{--unsafe-channel-evaluation} option disables these
-safeguards.
-
-@quotation Warning
-When using @code{--unsafe-channel-evaluation}, channel files can
-@emph{run arbitrary code on your machine}.  While this is useful in some
-cases, only use @code{--unsafe-channel-evaluation} when you fully
-understand the code of the channel files you use!
-@end quotation
-
 @item --no-channel-files
 @itemx -q
 Inhibit loading of the user and system channel files,
@@ -5044,17 +4922,6 @@ information.
 In addition, @command{guix pull} supports all the common build options
 (@pxref{Common Build Options}).
 
-Every time the user invokes a Guix command, Guix detects if the current
-installation has exceeded a certain duration (7 days by default) and
-alerts the user to update with @command{guix pull} if necessary.
-The duration can be configured with the following environment variable:
-
-@defvr {Environment Variable} GUIX_DISTRO_AGE_WARNING
-This environment variable, if set, should be a string representing a
-duration. If the current Guix installation exceeds the duration, Guix
-will raise a warning for outdated installation.
-@end defvr
-
 @node Invoking guix time-machine
 @section Invoking @command{guix time-machine}
 
@@ -5151,68 +5018,12 @@ Use the @code{guix} channel from the specified @var{url}, at the
 given @var{commit} (a valid Git commit ID represented as a hexadecimal
 string or the name of a tag), or @var{branch}.
 
-@item --channels=@var{file-or-uri}
-@itemx -C @var{file-or-uri}
-Read the list of channels from @var{file-or-uri}.  @var{file-or-uri}
-must contain Scheme code that evaluates to a list of channel objects.
+@item --channels=@var{file}
+@itemx -C @var{file}
+Read the list of channels from @var{file}.  @var{file} must contain
+Scheme code that evaluates to a list of channel objects.
 @xref{Channels} for more information.
 
-When @var{file-or-uri} is a URL, channels are transparently downloaded.
-In the example below, we pull from the latest revision of Guix that was
-successfully evaluated:
-
-@example
-guix time-machine \
-  -C https://ci.guix.gnu.org/eval/latest/channels.scm?spec=master \
-  -- describe
-@end example
-
-@cindex SWHID, for channel files
-Note that downloading a channel file potentially harms reproducibility:
-the file might vanish or be modified on the server behind your back.
-From a reproducibility viewpoint the safe approach is to keep channel
-files under version control, or to refer to them by their
-@uref{https://swhid.org,Software Hash Identifier}, or SWHID, which
-uniquely and unambiguously identifies contents.  Here is an example:
-
-@example
-guix time-machine \
-  -C swh:1:cnt:ae02d8ba3538a385ee799e61cdd0dfc5e14a8d1b \
-  -- @dots{}
-@end example
-
-This command downloads the data designated by the identifier from
-@uref{https://archive.softwareheritage.org, the Software Heritage
-archive}; it is fully reproducible because the data it refers to is
-immutable.
-
-@xref{Invoking guix pull}, for more information, and @pxref{Invoking
-guix hash}, for info on how to compute the SWHID of a file.
-
-@item --allow-untrusted-channels[=yes|no]
-Whether to allow pulls from untrusted channels.
-
-@quotation Warning
-Allowing untrusted channels can effectively lead to arbitrary code
-execution on your system.
-@end quotation
-
-@xref{trusted-channels, @command{guix pull} documentation}, for more
-info.
-
-@item --unsafe-channel-evaluation
-Allow arbitrary code execution from channels files.
-
-@quotation Warning
-When using @code{--unsafe-channel-evaluation}, channel files can
-@emph{run arbitrary code on your machine}.  Only use
-@code{--unsafe-channel-evaluation} when you fully understand the code of
-the channel files you use!
-
-@xref{unsafe-channel-evaluation, @option{--unsafe-channel-evaluation} in
-@command{guix pull}}, for background information.
-@end quotation
-
 @item --no-channel-files
 @itemx -q
 Inhibit loading of the user and system channel files,
@@ -5941,7 +5752,6 @@ pull} uses the latest commit with available substitutes for the package
 definitions: this is done by querying the continuous integration
 server at @url{https://ci.guix.gnu.org}.
 
-@findex channel-with-substitutes-available
 @lisp
 (use-modules (guix ci))
 
@@ -5956,21 +5766,6 @@ substitutes.  It only ensures that @command{guix pull} will not try to
 compile package definitions.  This is particularly useful when using
 machines with limited resources.
 
-@quotation Warning
-Use of this functionality in your channel file requires it to be
-evaluated in ``unsafe'' mode, with the
-@option{--unsafe-channel-evaluation} option.
-@xref{unsafe-channel-evaluation, the @command{guix pull} documentation},
-for more info.
-
-However, a similar result can be achieved by running, say:
-
-@example
-guix pull \
-  -C https://ci.guix.gnu.org/eval/latest/channels.scm?spec=master
-@end example
-@end quotation
-
 @node Creating a Channel
 @section Creating a Channel
 
@@ -14880,32 +14675,8 @@ guix hash @var{option} @var{file} ...
 @end example
 
 When @var{file} is @code{-} (a hyphen), @command{guix hash} computes the
-hash of data read from standard input.
-
-Here are a few examples:
-
-@table @asis
-@item SHA256 of a file for use in an @code{origin} record:
-@example
-guix hash example.tar.gz
-@end example
-
-@item SHA256 of directory @var{checkout} for use in an @code{origin} record:
-@example
-guix hash -rx @var{checkout}
-@end example
-
-@item SHA1 hash of @var{file} like the @code{sha1sum} command:
-@example
-guix hash -H sha1 -f hex @var{file}
-@end example
-
-@cindex SWHID, computing
-@item SHA1 hash of @var{file} for a @code{swh:1:cnt} @uref{https://swhid.org, SWHID}:
-guix hash -S git -H sha1 -f hex @var{file}
-@end table
-
-@command{guix hash} has the following options:
+hash of data read from standard input.  @command{guix hash} has the
+following options:
 
 @table @code
 
@@ -15570,6 +15341,26 @@ repository used by the OCaml community.
 
 Additional options include:
 
+@table @code
+@item --recursive
+@itemx -r
+Traverse the dependency graph of the given upstream package recursively
+and generate package expressions for all those packages that are not yet
+in Guix.
+@end table
+
+@item composer
+@cindex Composer
+@cindex PHP
+Import metadata from the @uref{https://getcomposer.org/, Composer} package
+archive used by the PHP community, as in this example:
+
+@example
+guix import composer phpunit/phpunit
+@end example
+
+Additional options include:
+
 @table @code
 @item --recursive
 @itemx -r
@@ -15601,26 +15392,7 @@ Also, please note that versions are not compared across repositories.
 The first repository (from left to right) that has at least one version
 of a given package will prevail over any others, and the version
 imported will be the latest one found @emph{in this repository only}.
-@end table
 
-@item composer
-@cindex Composer
-@cindex PHP
-Import metadata from the @uref{https://getcomposer.org/, Composer} package
-archive used by the PHP community, as in this example:
-
-@example
-guix import composer phpunit/phpunit
-@end example
-
-Additional options include:
-
-@table @code
-@item --recursive
-@itemx -r
-Traverse the dependency graph of the given upstream package recursively
-and generate package expressions for all those packages that are not yet
-in Guix.
 @end table
 
 @item go
@@ -16211,10 +15983,51 @@ Use @var{host} as the OpenPGP key server when importing a public key.
 @cindex format conventions
 The @command{guix style} command helps users and packagers alike style
 their package definitions and configuration files according to the
-latest fashionable trends, or patch them with specific rewrites.  It can
-either reformat whole files, with the @option{--whole-file} option, or
-apply specific @dfn{styling rules} to individual package definitions.
-The command provides multiple styling rules, explained below.
+latest fashionable trends.  It can either reformat whole files, with the
+@option{--whole-file} option, or apply specific @dfn{styling rules} to
+individual package definitions.  The command currently provides the
+following styling rules:
+
+@itemize
+@item
+formatting package definitions according to the project's conventions
+(@pxref{Formatting Code});
+
+@item
+rewriting package inputs to the ``new style'', as explained below.
+@end itemize
+
+The way package inputs are written is going through a transition
+(@pxref{package Reference}, for more on package inputs).  Until version
+1.3.0, package inputs were written using the ``old style'', where each
+input was given an explicit label, most of the time the package name:
+
+@lisp
+(package
+  ;; @dots{}
+  ;; The "old style" (deprecated).
+  (inputs `(("libunistring" ,libunistring)
+            ("libffi" ,libffi))))
+@end lisp
+
+Today, the old style is deprecated and the preferred style looks like
+this:
+
+@lisp
+(package
+  ;; @dots{}
+  ;; The "new style".
+  (inputs (list libunistring libffi)))
+@end lisp
+
+Likewise, uses of @code{alist-delete} and friends to manipulate inputs
+is now deprecated in favor of @code{modify-inputs} (@pxref{Defining
+Package Variants}, for more info on @code{modify-inputs}).
+
+In the vast majority of cases, this is a purely mechanical change on the
+surface syntax that does not even incur a package rebuild.  Running
+@command{guix style -S inputs} can do that for you, whether you're working on
+packages in Guix proper or in an external channel.
 
 The general syntax is:
 
@@ -16277,45 +16090,14 @@ definition of the Coreutils package like so:
 @end example
 
 @item inputs
-Rewrite package inputs to the ``new style''. This is how you would
-rewrite inputs of package @code{whatnot} in your own channel:
+Rewrite package inputs to the ``new style'', as described above.  This
+is how you would rewrite inputs of package @code{whatnot} in your own
+channel:
 
 @example
 guix style -L ~/my/channel -S inputs whatnot
 @end example
 
-The way package inputs are written is going through a transition
-(@pxref{package Reference}, for more on package inputs).  Until version
-1.3.0, package inputs were written using the ``old style'', where each
-input was given an explicit label, most of the time the package name:
-
-@lisp
-(package
-  ;; @dots{}
-  ;; The "old style" (deprecated).
-  (inputs `(("libunistring" ,libunistring)
-            ("libffi" ,libffi))))
-@end lisp
-
-Today, the old style is deprecated and the preferred style looks like
-this:
-
-@lisp
-(package
-  ;; @dots{}
-  ;; The "new style".
-  (inputs (list libunistring libffi)))
-@end lisp
-
-Likewise, uses of @code{alist-delete} and friends to manipulate inputs
-is now deprecated in favor of @code{modify-inputs} (@pxref{Defining
-Package Variants}, for more info on @code{modify-inputs}).
-
-In the vast majority of cases, this is a purely mechanical change on the
-surface syntax that does not even incur a package rebuild.  Running
-@command{guix style -S inputs} can do that for you, whether you're working on
-packages in Guix proper or in an external channel.
-
 Rewriting is done in a conservative way: preserving comments and bailing
 out if it cannot make sense of the code that appears in an inputs field.
 The @option{--input-simplification} option described below provides
@@ -16354,29 +16136,6 @@ rebuild of the affected packages.  Furthermore, if a package definition
 happens to be using G-expressions already, @command{guix style} leaves
 it unchanged.
 
-@item remove-input
-@itemx remove-native-input
-@itemx remove-propagated-input
-These styling rules remove an input from the given package(s).
-
-Removing these packages respects the package syntax, doesn't affect
-margin comments or parentheses, and will put all remaining inputs on a
-single line if there are less than three.
-
-This is a focused styling rule for use in teams, when updating
-build-systems, or removing unwanted development inputs from
-native-inputs.
-
-To remove package @var{whatnot} from all inputs, use the
-@code{--parameter} option:
-
-@example
-guix style -S remove-input --parameter=@var{whatnot}
-@end example
-
-It is also possible to do that for a collection of packages by appending
-them to the above invocation.
-
 @item git-source
 If the @code{home-page} is a Git repository (as per
 @code{git-repository-url?}), and the actual Git repository is tagged
@@ -20946,9 +20705,6 @@ The syslog configuration file to use.
 @xref{syslogd invocation,,, inetutils, GNU Inetutils}, for more
 information on the configuration file syntax.
 
-@item @code{pid-file} (default: @code{"/var/run/syslog.pid"})
-The pid file for @command{syslogd}.
-
 @item @code{extra-options} (default: @code{'()})
 List of extra command-line options for @command{syslog}.
 
@@ -28827,9 +28583,8 @@ host	all	all	::1/128 	md5"))
 
 @table @asis
 @item @code{log-destination} (default: @code{"syslog"})
-The logging method to use for PostgreSQL@.  Valid values are
-@code{"stderr"}, @code{"csvlog"}, @code{"jsonlog"}, @code{"syslog"} and
-@code{"eventlog"}.  Multiple values are accepted, separated by commas.
+The logging method to use for PostgreSQL@.  Multiple values are accepted,
+separated by commas.
 
 @item @code{hba-file} (default: @code{%default-postgres-hba})
 Filename or G-expression for the host-based authentication
@@ -28844,6 +28599,9 @@ is to listen for connections from client applications. If set to
 @code{""} PostgreSQL does not listen on any Unix-domain sockets, in
 which case only TCP/IP sockets can be used to connect to the server.
 
+By default, the @code{#false} value means the PostgreSQL default value
+will be used, which is currently @samp{/tmp}.
+
 @item @code{extra-config} (default: @code{'()})
 List of additional keys and values to include in the PostgreSQL config
 file.  Each entry in the list should be a list where the first element
@@ -36234,15 +35992,6 @@ Launch the app as this group (it must be an existing group).
 A list of sockets (as path strings) which gunicorn will be listening
 on.  This list must contain at least one socket.
 
-@item @code{socket-user} (default: @code{user}) (type: string)
-Owner of the directory containing the socket (must be an existing user).
-
-@item @code{socket-group} (default: @code{group}) (type: string)
-Group owner of the directory containing the socket (must be an existing group).
-
-@item @code{socket-mode} (default: @code{#o750}) (type: integer)
-File mode to use for the directory containing the socket.
-
 @item @code{workers} (default: @code{1}) (type: integer)
 The number of workers for the gunicorn app.
 
@@ -45889,81 +45638,6 @@ mount.
 @end table
 @end deftp
 
-@subsubheading btrfs-scrub Service
-@cindex btrfs-scrub service
-@cindex solid state drives, periodic trim
-@cindex solid state drives, trim
-
-@c This was copied from the btrfs-scrub manpage, with some Texinfo touch-ups.
-@quotation Information
-Scrub is a validation pass over all filesystem data and metadata that
-detects data checksum errors, basic super block errors, basic metadata
-block header errors, and disk read errors.
-
-Scrub is done on a per-device base, if a device is specified to
-@command{btrfs scrub start}, then only that device will be
-scrubbed.  Although btrfs will also try to read other device to find a
-good copy, if the mirror on that specified device failed to be read or
-pass verification.
-
-If a path of btrfs is specified to @command{btrfs scrub start}, btrfs
-will scrub all devices in parallel.
-
-On filesystems that use replicated block group profiles (e.g. RAID1),
-read-write scrub will also automatically repair any damage by copying
-verified good data from one of the other replicas.
-
-Such automatic repair is also carried out when reading metadata or data
-from a read-write mounted filesystem.
-@end quotation
-
-@defvar btrfs-scrub-service-type
-Type for a service that periodically runs @command{btrfs-scrub} on a
-certain device, whose value must be an
-@code{<btrfs-scrub-configuration>} object.  The service can be
-instantiated in its default configuration with:
-
-@lisp
-;; This will scrub the root (@file{/}) filesystem.
-(service btrfs-scrub-service-type)
-
-;; This will scrub the @file{/gnu/store} filesystem (assuming it's a
-;; different filesystem from @file{/}).
-
-(service btrfs-scrub-service-type
-  (btrfs-scrub-configuration
-    (to-scrub "/gnu/store")))
-@end lisp
-@end defvar
-
-@c %start of fragment
-
-@deftp {Data Type} btrfs-scrub-configuration
-Available @code{btrfs-scrub-configuration} fields are:
-
-@table @asis
-@item @code{package} (default: @code{btrfs-progs}) (type: file-like)
-The package providing the @command{btrfs} command.
-
-@item @code{schedule} (default: @code{"0 0 1-7 * 0"}) (type: Shepherd calendar event)
-Schedule for launching @command{btrfs-scrub}, expressed as a string in
-traditional cron syntax or as a gexp evaluating to a Shepherd calendar
-event (@pxref{Timers,,, shepherd, The GNU Shepherd Manual}).  By default
-this is set to run the 1st Sunday of the month, at 00:00.
-
-@item @code{to-scrub} (default: @code{"/"}) (type: maybe-string)
-Device to scrub.  It will scrub the root (@file{/}) if not given.
-
-@item @code{extra-arguments} (type: maybe-list-of-strings)
-Extra options to append to @command{btrfs scrub start} (run @samp{man
-btrfs-scrub.8} for more information).  Keep in mind that, by definition,
-this service uses the @option{-B} flag (do not background and print
-scrub statistics when finished).
-
-@end table
-
-@end deftp
-
 @cindex oom
 @cindex out of memory killer
 @cindex earlyoom
@@ -46538,26 +46212,6 @@ up not being used much for the reasons described there.
 @end deftp
 @end defvar
 
-@cindex fwupd
-@cindex firmware update
-@subsubheading fwupd Service
-
-@defvar fwupd-service-type
-This service allows users of supported hardware to update their firmware.  The
-service's value is a @code{fwupd-configuration} record.
-
-@deftp {Data Type} fwupd-configuration
-This is the data type representing the configuration for the fwupd
-service.
-
-@table @asis
-@item @code{fwupd} (default @code{fwupd})
-The fwupd package that will be installed in the system profile.
-@end table
-
-@end deftp
-@end defvar
-
 @node Hurd Services
 @subsection Hurd Services
 
@@ -49556,7 +49210,7 @@ Return the default GRUB theme used by the operating system if no
 record.
 
 It comes with a fancy background image displaying the Guix
-logo.
+logos.
 @end deffn
 
 For example, to override the default resolution, you may use something
@@ -50346,8 +50000,6 @@ accepts store items it receives from the coordinator:
 # guix archive --authorize < coordinator-public-key.txt
 @end example
 
-@cindex @command{guix deploy, sudo configuration}
-@anchor{guix-deploy-via-sudo}
 @code{user}, in this example, specifies the name of the user account to log in
 as to perform the deployment.  Its default value is @code{root}, but root
 login over SSH may be forbidden in some cases.  To work around this,
@@ -50564,27 +50216,13 @@ small to bootstrap a Guix system from.
 
 @item @code{ssh-key} (default: @code{#f})
 If specified, the file name of the SSH private key to use to
-authenticate with the remote host.  If left unspecified, a temporary SSH
-key is used during the early provisioning of the machine, after which
-the authentication with the final machine is handled by your SSH client
-or agent.  It's a good idea to have your public SSH key authorized
-declaratively in the @code{operating-system} specification provided, via
-the @code{authorized-keys} field of the @code{openssh-configuration}
-record.  To be able to run @samp{guix deploy} after the initial
-provisioning is done, an SSH connection to the root account or a
-password-less sudo configuration is needed (@pxref{guix-deploy-via-sudo,
-Invoking guix deploy}).  For the later, you must also explicitly specify
-the @code{user} field, which otherwise defaults to @code{"root"}.
+authenticate with the remote host.
 
 @item @code{ssh-public-key} (default: extracted from @code{ssh-key})
 If specified, either a public key as returned by
 @code{string->public-key} or the path to the SSH public key to use to
 authenticate with the remote host.
 
-@item @code{user} (default: @code{"root"})
-The user to use for SSH authentication for the @samp{guix deploy}
-command once the initial provisioning is complete.
-
 @end table
 
 When deploying a machine for the first time, the following steps are
@@ -50618,36 +50256,36 @@ server.
 Once the server has been provisioned and SSH is available, deployment
 continues by delegating it to the @code{managed-host-environment-type}.
 
-Depending on their type, x86_64 or AArch64 servers on the Hetzner Cloud
-service can be provisioned using BIOS or UEFI boot mode.  The @code{(gnu
-machine hetzner)} module exports the @code{make-hetzner-os} procedure,
-which takes the server type string as an argument (e.g. @code{"cx23"})
-and returns a base @code{operating-system} definition compatible with
-it.
+Servers on the Hetzner Cloud service can be provisioned on the AArch64
+architecture using UEFI boot mode, or on the x86_64 architecture using
+BIOS boot mode.  The @code{(gnu machine hetzner)} module exports the
+@code{%hetzner-os-arm} and @code{%hetzner-os-x86} operating systems that
+are compatible with those two architectures, and can be used as a base
+for defining your custom operating system.
 
 The following example shows the definition of two machines that are
-deployed on the Hetzner Cloud service.  The first one for an ARM server
-type that has 16 shared vCPUs and 32 GB of RAM, the second for an x86_64
-server type that has 16 shared vCPUs and 32 GB of RAM.
+deployed on the Hetzner Cloud service.  The first one uses the
+@code{%hetzner-os-arm} operating system to run a server with 16 shared
+vCPUs and 32 GB of RAM on the @code{aarch64} architecture, the second
+one uses the @code{%hetzner-os-x86} operating system on a server with 16
+shared vCPUs and 32 GB of RAM on the @code{x86_64} architecture.
 
 @lisp
 (use-modules (gnu machine)
              (gnu machine hetzner))
 
-(list (let ((server-type "cax41"))
-        (machine
-          (operating-system (make-hetzner-os server-type))
-          (environment hetzner-environment-type)
-          (configuration (hetzner-configuration
-                           (server-type server-type)
-                           (ssh-key "/home/charlie/.ssh/id_rsa")))))
-      (let ((server-type "cpx51"))
-        (machine
-          (operating-system (make-hetzner-os server-type))
-          (environment hetzner-environment-type)
-          (configuration (hetzner-configuration
-                           (server-type server-type)
-                           (ssh-public-key "/home/charlie/.ssh/id_rsa.pub"))))))
+(list (machine
+       (operating-system %hetzner-os-arm)
+       (environment hetzner-environment-type)
+       (configuration (hetzner-configuration
+                       (server-type "cax41")
+                       (ssh-key "/home/charlie/.ssh/id_rsa"))))
+      (machine
+       (operating-system %hetzner-os-x86)
+       (environment hetzner-environment-type)
+       (configuration (hetzner-configuration
+                       (server-type "cpx51")
+                       (ssh-public-key "/home/charlie/.ssh/id_rsa.pub")))))
 @end lisp
 
 @vindex GUIX_HETZNER_API_TOKEN
@@ -51632,7 +51270,7 @@ after receiving @code{SIGHUP}.
 
 After adding
 @lisp
-(shepherd-signal-action 'reload SIGHUP)
+(shepherd-signal-action 'reload SIGHUP))
 @end lisp
 
 the @code{reload} action will be available and can be used with
@@ -52280,10 +51918,8 @@ mount --rbind /sys /mnt/sys
 mount --rbind /dev /mnt/dev
 @end example
 
-A quick way to check if your system booted with EFI support is to check
-if @file{/sys/firmware/efi} exists.  If your system is EFI-based, you
-must also mount the ESP partition.  Assuming it is @file{/dev/sda1}, you
-can do so with:
+If your system is EFI-based, you must also mount the ESP partition.
+Assuming it is @file{/dev/sda1}, you can do so with:
 
 @example sh
 mount /dev/sda1 /mnt/boot/efi
@@ -52569,13 +52205,12 @@ services)}.
 * GPG: GNU Privacy Guard.       Setting up GPG and related tools.
 * Desktop: Desktop Home Services.  Services for graphical environments.
 * Guix: Guix Home Services.     Services for Guix.
-* Backup: Backup Home Services.  Services for backing up User's files.
+* Backup: Backup Home Services.   Services for backing up User's files.
 * Fonts: Fonts Home Services.   Services for managing User's fonts.
 * Sound: Sound Home Services.   Dealing with audio.
 * Mail: Mail Home Services.     Services for managing mail.
 * Messaging: Messaging Home Services.  Services for managing messaging.
 * Media: Media Home Services.   Services for managing media.
-* mpv Media Player::
 * Niri: Niri window manager.    Setting up the Niri.
 * Sway: Sway window manager.    Setting up the Sway configuration.
 * Networking: Networking Home Services.  Networking services.
@@ -53504,7 +53139,7 @@ specifying the command to run.
 @lisp
 (use-modules (gnu) (guix)
              (gnu home services shepherd)
-             (gnu packages code))
+             (gnu packages idutils))
 
 (define idutils-service
   ;; Index my 'doc' directory everyday at 12:15PM and 7:15PM.
@@ -53775,32 +53410,6 @@ The list of accepted host key algorithms---e.g.,
 @item @code{accepted-key-types} (type: maybe-string-list)
 The list of accepted user public key types.
 
-@item @code{control-master} (type: maybe-symbol)
-Enables the sharing of multiple sessions over a single network
-connection.  Acceptable values are @code{'no}, @code{'yes},
-@code{'auto}, @code{'ask}, and @code{'autoask}.
-
-@item @code{control-file-name} (type: maybe-string)
-The file name of the control socket used for connection sharing, or
-@code{"none"} to disable connection sharing.
-
-@item @code{control-persist} (type: maybe-string)
-When used in conjunction with @env{control-master}, specifies that the
-master connection should remain open in the background (waiting for
-future client connections) after the initial client connection has been
-closed.
-
-@item @code{sent-environment-variables} (type: maybe-env-list)
-Specifies which variables from the local environment should be sent to
-the server.  The server must also support it, and the server must be
-configured to accept those environment variables.
-
-@item @code{environment-variables} (type: maybe-string-alist)
-List of environment variables with corresponding values to send to the
-server, as an alist of strings of the form @code{'("@var{variable}" .
-"@var{value}")}.  The server must also support it, and the server must
-be configured to accept those environment variables.
-
 @item @code{extra-content} (default: @code{""}) (type: raw-configuration-string)
 Extra content appended as-is to this @code{Host} block in
 @file{~/.ssh/config}.

doc/local.mk

@@ -6,7 +6,7 @@
 # Copyright © 2016, 2018 Mathieu Lirzin <mthl@gnu.org>
 # Copyright © 2018, 2021 Julien Lepiller <julien@lepiller.eu>
 # Copyright © 2019 Timothy Sample <samplet@ngyro.com>
-# Copyright © 2024, 2026 Janneke Nieuwenhuizen <janneke@gnu.org>
+# Copyright © 2024 Janneke Nieuwenhuizen <janneke@gnu.org>
 # Copyright © 2024 gemmaro <gemmaro.dev@gmail.com>
 #
 # This file is part of GNU Guix.
@@ -30,7 +30,7 @@ COOKBOOK_LANGUAGES = de es fr it ko pt_BR ru sk sv ta zh_CN
 
 # Arg1: A list of languages codes.
 # Arg2: The file name stem.
-lang_to_texinfo = $(foreach lang,$(1),$(srcdir)/%D%/$(2).$(lang).texi)
+lang_to_texinfo = $(foreach lang,$(1),%D%/$(2).$(lang).texi)
 
 # Automake does not understand GNU Make non-standard extensions,
 # unfortunately, so we cannot use the above patsubst-based function here.
@@ -104,7 +104,7 @@ MAINTAINERCLEANFILES  = $(OS_CONFIG_EXAMPLES_TEXI) $(TRANSLATED_INFO)
 # reference is not translated, which means it references a section that does not
 # exist.
 define xref_command
-$(top_builddir)/pre-inst-env $(GUILE) --no-auto-compile	\
+$(top_srcdir)/pre-inst-env $(GUILE) --no-auto-compile	\
   "$(top_srcdir)/build-aux/convert-xref.scm"		\
   $@.tmp $<
 endef
@@ -116,21 +116,21 @@ dummy_pot = $(shell mktemp --suffix=.pot)
 $(srcdir)/%D%/guix.%.texi: po/doc/guix-manual.%.po $(srcdir)/%D%/contributing.%.texi guix/build/po.go
 	-$(AM_V_PO4A)$(PO4A) --no-update			\
 	    --variable localized="$@.tmp"			\
-	    --variable master="$(srcdir)/%D%/guix.texi"		\
+	    --variable master="%D%/guix.texi"			\
 	    --variable po="$<"					\
 	    --variable pot=$(dummy_pot)			\
-	    $(srcdir)/po/doc/po4a.cfg
+	    po/doc/po4a.cfg
 	-sed -i "s|guix\.info|$$(basename "$@" | sed 's|texi$$|info|')|" "$@.tmp"
 	-$(AM_V_POXREF)LC_ALL=en_US.UTF-8 $(xref_command)
 	-mv "$@.tmp" "$@"
 
 $(srcdir)/%D%/guix-cookbook.%.texi: po/doc/guix-cookbook.%.po guix/build/po.go
-	-$(AM_V_PO4A)$(PO4A) --no-update				\
-	    --variable localized="$@.tmp"				\
-	    --variable master="$(srcdir)/%D%/guix-cookbook.texi"	\
-	    --variable po="$<"						\
+	-$(AM_V_PO4A)$(PO4A) --no-update			\
+	    --variable localized="$@.tmp"			\
+	    --variable master="%D%/guix-cookbook.texi"		\
+	    --variable po="$<"					\
 	    --variable pot=$(dummy_pot)			\
-	    $(srcdir)/po/doc/po4a.cfg
+	    po/doc/po4a.cfg
 	-sed -i "s|guix-cookbook\.info|$$(basename "$@" | sed 's|texi$$|info|')|" "$@.tmp"
 	-$(AM_V_POXREF)LC_ALL=en_US.UTF-8 $(xref_command)
 	-mv "$@.tmp" "$@"
@@ -138,16 +138,16 @@ $(srcdir)/%D%/guix-cookbook.%.texi: po/doc/guix-cookbook.%.po guix/build/po.go
 $(srcdir)/%D%/contributing.%.texi: po/doc/guix-manual.%.po guix/build/po.go
 	-$(AM_V_PO4A)$(PO4A) --no-update			\
 	    --variable localized="$@.tmp"			\
-	    --variable master="$(srcdir)/%D%/contributing.texi"		\
+	    --variable master="%D%/contributing.texi"		\
 	    --variable po="$<"					\
 	    --variable pot=$(dummy_pot)			\
-	    $(srcdir)/po/doc/po4a.cfg
+	    po/doc/po4a.cfg
 	-$(AM_V_POXREF)LC_ALL=en_US.UTF-8 $(xref_command)
 	-mv "$@.tmp" "$@"
 
 %D%/os-config-%.texi: gnu/system/examples/%.tmpl
 	$(AM_V_GEN)$(MKDIR_P) "`dirname $@`";	\
-	sed -e s,@,@@,g "$<" > "$@"
+	cp "$<" "$@"
 
 infoimagedir = $(infodir)/images
 dist_infoimage_DATA =				\

etc/manifests/cross-compile.scm

@@ -1,6 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2020-2022, 2024 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2020, 2026 Janneke Nieuwenhuizen <janneke@gnu.org>
+;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2023 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2025 Efraim Flashner <efraim@flashner.co.il>
 ;;;
@@ -61,7 +61,7 @@ TARGET."
   ;; from the other package sets.
   (fold delete %base-packages
         (append (map specification->package
-                     '("kbd" "iproute2" "iw" "wireless-tools"))
+                     '("e2fsprogs" "kbd" "iproute2" "iw" "wireless-tools"))
                 %base-packages-linux)))
 
 (define %system-packages

etc/news.scm

@@ -43,133 +43,6 @@
 (channel-news
  (version 0)
 
- (entry (commit "c9dcd203e5356f13b736d5be121fd61874be1a93")
-        (title
-         (en "@command{pull} and @command{time-machine} can download channel
-files")
-         (de "@command{pull} und @command{time-machine} können Kanaldateien
-herunterladen")
-         (fr "@command{pull} et @command{time-machine} peuvent télécharger des
-fichiers canaux")
-         (pt "@command{pull} e @command{time-machine} podem baixar arquivos de canal"))
-        (body
-         (en "The @command{guix pull} and @command{guix time-machine} can now
-be passed a URL as their @option{-C} (or @option{--channels}) option.  For
-instance, the command below pulls from the latest successfully-evaluated
-commit of the @code{master} branch:
-
-@example
-guix pull \\
-  -C https://ci.guix.gnu.org/eval/latest/channels.scm?spec=master
-@end example
-
-Alternatively, one may also specify a @uref{https://swhid.org, SWHID} that
-points to a channel file:
-
-@example
-guix time-machine \\
-  -C swh:1:cnt:ae02d8ba3538a385ee799e61cdd0dfc5e14a8d1b \\
-  -- ...
-@end example
-
-To make that possible, channel files are now evaluated in an isolated
-environment (a @dfn{sandbox}), which prevents them from evaluating arbitrary
-code; if you have existing channel files that rely on \"non-standard\"
-features, you may now need to pass @option{--unsafe-channel-evaluation} to
-evaluate them.  Furthermore, when fetching channels from a downloaded file,
-only @dfn{trusted channels} are allowed---one may specify them in
-@file{~/.config/guix/trusted-channels.scm}.
-
-See @samp{info \"(guix)Invoking guix pull\"} for more information.")
-         (de "Den Befehlen @command{guix pull} und @command{guix time-machine}
-kann jetzt eine URL mit der Option @option{-C} (oder @option{--channels})
-übergeben werden.  Zum Beispiel lädt der folgende Befehl vom neuesten
-erfolgreich ausgewerteten Commit des @code{master}-Branches herunter:
-
-@example
-guix pull \\
-  -C https://ci.guix.gnu.org/eval/latest/channels.scm?spec=master
-@end example
-
-Als Alternative kann man auch eine @uref{https://swhid.org, SWHID} angeben, die
-auf eine Kanaldatei verweist:
-
-@example
-guix time-machine \\
-  -C swh:1:cnt:ae02d8ba3538a385ee799e61cdd0dfc5e14a8d1b \\
-  -- ...
-@end example
-
-Damit das möglich ist, werden Kanaldateien jetzt in einer isolierten Umgebung
-ausgewertet (einer @dfn{Sandbox}), wodurch sie keinen beliebigen Code mehr
-ausführen können. Wenn Sie in bestehenden Dateien solche über den „Standard“
-hinausgehenden Funktionen benutzt haben, kann dazu jetzt verlangt werden, dass
-Sie @option{--unsafe-channel-evaluation} übergeben, um sie auszuwerten. Des
-Weiteren dürfen Kanäle aus heruntergeladenen Dateien nur als
-@dfn{vertrauenswürdig} markierte Kanäle verwenden, die Sie in
-@file{~/.config/guix/trusted-channels.scm} angeben.
-
-Siehe @samp{info \"(guix.de) Aufruf von guix pull\"} für mehr Informationen.")
-         (fr "Les commandes @command{guix pull} et @command{guix time-machine}
-peuvent dorénavant prendre une URL pour l'option @option{-C} (ou
-@option{--channels}).  Par exemple, la commande ci-dessous tire la dernière
-révision de la branch @code{master} à avoir été évaluée avec succès :
-
-@example
-guix pull \\
-  -C https://ci.guix.gnu.org/eval/latest/channels.scm?spec=master
-@end example
-
-On peut également spécifier un @uref{https://swhid.org, SWHID} qui pointe vers
-un fichier canaux :
-
-@example
-guix time-machine \\
-  -C swh:1:cnt:ae02d8ba3538a385ee799e61cdd0dfc5e14a8d1b \\
-  -- ...
-@end example
-
-Pour permettre cela, les fichiers canaux sont maintenant évalués dans un
-environnement isolé (un @dfn{bac à sable}), ce qui les empêche d'évaluer du
-code arbitraire ; lorsqu'on a des fichiers canaux qui dépendent de
-fonctionnalités « non standard », il peut dorénavant être nécessaire de passer
-l'option @option{--unsafe-channel-evaluation} pour les évaluer.  De plus,
-lorsqu'un fichier canaux est téléchargé, seuls les @dfn{canaux de confiance}
-sont admis---on peut les énumérer dans
-@file{~/.config/guix/trusted-channels.scm}.
-
-Voir @samp{info \"(guix.fr) Invoquer guix pull\"} pour plus
-d'informations.")
-         (pt "Os comandos @command{guix pull} e @command{guix time-machine} já
-podem receber uma URL como opção para @option{-C} (or @option{--channels}).
-Por exemplo, o comando abaixo busca do commit mais recente evaluado com
-sucesso do ramo @code{master}:
-
-@example
-guix pull \\
-  -C https://ci.guix.gnu.org/eval/latest/channels.scm?spec=master
-@end example
-
-Alternativamente, pode-se também especificar uma @uref{https://swhid.org,
-SWHID} que aponta para um arquivo de canal:
-
-@example
-guix time-machine \\
-  -C swh:1:cnt:ae02d8ba3538a385ee799e61cdd0dfc5e14a8d1b \\
-  -- ...
-@end example
-
-Para tornar isso possível, arquivos de canal agora são evaluados em um
-ambiente isolado (uma caixinha de areia, vulgo @dfn{sandbox}), o que os impede
-de evaluar código arbitrário; se você tem arquivos de canal que dependem de
-recursos \"não padrão\", pode ser necessário que você passe a opção
-@option{--unsafe-channel-evaluation} para evaluá-los.  Além disso, quando se
-buscam canais de um arquivo baixado, somente @dfn{canais confiáveis} são
-permitidos---é possível especificá-los em
-@file{~/.config/guix/trusted-channels.scm}.
-
-Veja @samp{info \"(guix.pt_BR)Invocando guix pull\"} para mais informação.")))
-
  (entry (commit "a7c8e68dc51144a6d3981b770aca9c4897fc7c0c")
         (title
          (en "Records can refer to inherited values of thunked fields")

etc/teams.scm

@@ -514,7 +514,6 @@ of Rebar and Mix build systems and Hex.pm importer."
                       "gnu/packages/autogen.scm"
                       "gnu/packages/autotools.scm"
                       "gnu/packages/bison.scm"
-                      "gnu/packages/compiler-tools.scm"
                       "gnu/packages/m4.scm"
                       "gnu/packages/oyacc.scm"
                       "gnu/packages/re2c.scm")))
@@ -662,12 +661,6 @@ challenges"))
                       "gnu/system/examples/lightweight-desktop.tmpl"
                       "gnu/system/examples/desktop.tmpl")))
 
-(define-team dotnet
-  (team 'dotnet
-        #:name ".NET"
-        #:description ".NET programming environment."
-        #:scope (list "gnu/packages/dotnet.scm")))
-
 (define-team electronics
   (team 'electronics
         #:name "Electronics team"
@@ -984,8 +977,7 @@ perl-build-system as well as the rakudo-build-system."
         #:description
         "Python, Python packages, the \"pypi\" importer, and the python-build-system."
         #:scope
-        (list (make-regexp* "^gnu/packages/aux-files/python/.*\\.py$")
-              "gnu/packages/django.scm"
+        (list "gnu/packages/django.scm"
               "gnu/packages/jupyter.scm"
               (make-regexp* "^gnu/packages/python(-.+|)\\.scm$")
               "gnu/packages/sphinx.scm"
@@ -1249,11 +1241,6 @@ the \"texlive\" importer."
                       "guix/build-system/zig.scm")))
 
 
-(define-member (person "Anderson Torres"
-                       "anderson.torres.8519@gmail.com"
-                       "AndersonTorres")
-  community translations)
-
 (define-member (person "Eric Bavier"
                        "bavier@posteo.net"
                        "bavier")
@@ -1557,7 +1544,7 @@ the \"texlive\" importer."
 (define-member (person "Danny Milosavljevic"
                        "dannym@friendly-machines.com"
                        "daym")
-  bootstrap dotnet hpc python rust science)
+  bootstrap hpc python rust science)
 
 (define-member (person "Andy Tai"
                        "atai@atai.org"
@@ -1679,21 +1666,6 @@ the \"texlive\" importer."
                        "gemmaro")
   ruby)
 
-(define-member (person "bdunahu"
-                       "bdunahu@operationnull.com"
-                       "bdunahu")
-  games)
-
-(define-member (person "Nomike"
-                       "nomike@nomike.com"
-                       "nomike")
-  dotnet)
-
-(define-member (person "Fabio Natali"
-                       "me@fabionatali.com"
-                       "fnat")
-  emacs)
-
 
 (define (find-team name)
   (or (hash-ref %teams (string->symbol name))

gnu/bootloader/grub.scm

@@ -446,11 +446,9 @@ when booting a root file system on a Btrfs subvolume."
                (modules (menu-entry-multiboot-modules entry)))
           #~(format port "
 menuentry ~s {
-  ~a
   multiboot ~a root=~a~a~a
 }~%"
                     #$label
-                    #$(grub-root-search device kernel)
                     #$kernel
                     #$(device-name->hurd-device-name device-name #:disk disk)
                     (string-join (list #$@arguments) " " 'prefix)

gnu/build/hurd-boot.scm

@@ -74,37 +74,16 @@ Return the value associated with OPTION, or #f on failure."
                 (loop (absolute target) (+ depth 1))
                 file))))))
 
-(define* (make-hurd-device-nodes #:key (root "/") (hurd "/hurd"))
+(define* (make-hurd-device-nodes #:optional (root "/"))
   "Make some of the nodes needed on GNU/Hurd."
   (define (scope dir)
-    (in-vicinity root dir))
-
-  (define scope-set-translator
-    (match-lambda
-      ((file-name command)
-       (scope-set-translator (list file-name command #o600)))
-      ((file-name command mode)
-       (let ((mount-point (scope file-name)))
-         (set-translator mount-point command mode)))))
+    (string-append root (if (string-suffix? "/" root) "" "/") dir))
 
   (mkdir-p (scope "dev"))
-  ;; XXX: We must have `/dev/console` otherwise `console-run` tries to
-  ;; create it while the file-system is still read-only.
-  (for-each (lambda (file)
-              (call-with-output-file (scope file)
-                (lambda (port)
-                  (display file port)   ;avoid hard-linking
-                  (chmod port #o666))))
-            '("dev/console"
-              ;; XXX What about vcs?
-              ;; Don't create /dev/null etc just yet; the store
-              ;; messes-up the permission bits.
-              ;; "dev/null"
-              ;; "dev/zero"
-              ;; "dev/full"
-              ;; "dev/random"
-              ;; "dev/urandom"
-              ))
+  ;; Don't create /dev/null etc just yet; the store
+  ;; messes-up the permission bits.
+  ;; Don't create /dev/console, /dev/vcs, etc.: they are created by
+  ;; console-run on first boot.
 
   (mkdir-p (scope "servers"))
   (for-each (lambda (file)
@@ -122,47 +101,22 @@ Return the value associated with OPTION, or #f on failure."
               "suspend"))
 
   (mkdir-p (scope "servers/socket"))
-  (mkdir-p (scope "servers/bus/pci"))
 
-  ;; Set the 'gnu.translator' extended attribute for passive translator
-  ;; settings for pipes (servers/socet/1) and mount information (proc/mounts).
-  ;; Pipes are needed for guile-3.0.11 to startup, this enables moving
-  ;; "runsystem" to guile.
-  ;; XXX TODO: Set more passive xattr translators?
-  (define servers
-    `(
-      ;; ("servers/bus/pci"         ("/hurd/pci-arbiter"))
-      ;; ("servers/crash-dump-core" ("/hurd/crash" "--dump-core"))
-      ;; ("servers/crash-kill"      ("/hurd/crash" "--kill"))
-      ;; ("servers/crash-suspend"   ("/hurd/crash" "--suspend"))
-      ;; ("servers/password"        ("/hurd/password"))
-      ;; PIPE -- for running runsystem as Guile
-      ("servers/socket/1"        (,(in-vicinity hurd "pflocal")))
-      ;; /servers/socket/2 and /26 are created by 'static-networking-service'.
-      ;; XXX: Spawn pfinet without arguments on these nodes so that a DHCP
-      ;; client has someone to talk to?
-      ("proc"                    (,(in-vicinity hurd "procfs") "--stat-mode=444"))))
+  ;; Don't create /servers/socket/1 & co: runsystem does that on first boot.
 
-  (for-each scope-set-translator servers)
-
-  (define devices
-    '())
-  (for-each scope-set-translator devices))
+  ;; TODO: Set the 'gnu.translator' extended attribute for passive translator
+  ;; settings?
+  (mkdir-p (scope "servers/bus/pci")))
 
 (define (passive-translator-xattr? file-name)
   "Return true if FILE-NAME has an extended @code{gnu.translator} attribute
-set.
-
-Note that reading \"gnu.*\" xattrs on Linux only work with ext4; for tmpfs,
-used during image creation, linux-7.0 with linux-shmem-hurd-xattr patch is
-needed."
-  (and (file-exists? file-name)
-       (catch 'system-error
-         (lambda _ (not (string-null? (getxattr file-name "gnu.translator"))))
-         (lambda args
-           (if (= ENODATA (system-error-errno args))
-               #f
-               (apply throw args))))))
+set."
+  (catch 'system-error
+    (lambda _ (not (string-null? (getxattr file-name "gnu.translator"))))
+    (lambda args
+      (if (= ENODATA (system-error-errno args))
+          #f
+          (apply throw args)))))
 
 (define (passive-translator-installed? file-name)
   "Return true if @file{showtrans} finds a translator installed on FILE-NAME."
@@ -182,11 +136,7 @@ needed."
       (passive-translator-installed? file-name)))
 
 (define* (set-translator file-name command #:optional (mode #o600))
-  "Setup translator COMMAND on FILE-NAME.
-
-Note that setting \"gnu.*\" xattrs on Linux only work with ext4; for tmpfs,
-used during image creation, linux-7.0 with linux-shmem-hurd-xattr patch is
-needed."
+  "Setup translator COMMAND on FILE-NAME."
   (unless (translated? file-name)
     (let ((dir (dirname file-name)))
       (unless (directory-exists? dir)
@@ -218,7 +168,7 @@ needed."
   "Make some of the device nodes needed on GNU/Hurd."
 
   (define (scope dir)
-    (in-vicinity root dir))
+    (string-append root (if (string-suffix? "/" root) "" "/") dir))
 
   (define scope-set-translator
     (match-lambda
@@ -230,19 +180,8 @@ needed."
 
   (define (mkdir* dir)
     (let ((dir (scope dir)))
-      (unless (file-exists? dir)
-        (mkdir-p dir))))
-
-  ;; (define random-seed "/var/lib/random-seed")
-
-  ;; ;; Create seed file to avoid
-  ;; ;; /gnu/store/...-hurd-x.y.z/hurd/random: Warning: Failed to read random seed file /var/lib/random-seed: No such file or directory
-  ;; (let ((file (scope random-seed)))
-  ;;   (mkdir-p (dirname file))
-  ;;   (call-with-output-file file
-  ;;     (lambda (port)
-  ;;       (display (iota 1000) port)
-  ;;       (chmod port #o600))))
+     (unless (file-exists? dir)
+       (mkdir-p dir))))
 
   (define servers
     '(("servers/bus/pci"         ("/hurd/pci-arbiter"))
@@ -259,14 +198,8 @@ needed."
   (define devices
     `(("dev/full"    ("/hurd/null"     "--full")            #o666)
       ("dev/null"    ("/hurd/null")                         #o666)
-      ;; The random translators, especially /dev/urandom, need to be non-passive
-      ;; When they exist in the file-system and reference /var/lib/random-seed
-      ;; while / is read-only. console-run will hang.
-      ;; ("dev/random"  ("/hurd/random"   "--seed-file" ,random-seed)
-      ;;                                                       #o644)
-      ;; ("dev/urandom"  ("/hurd/random"   "--seed-file" ,random-seed
-      ;;                 "--fast")
-      ;;  #o644)
+      ("dev/random"  ("/hurd/random"   "--seed-file" "/var/lib/random-seed")
+                                                            #o644)
       ("dev/zero"    ("/hurd/storeio"  "--store-type=zero") #o666)
 
       ("dev/console" ("/hurd/term"     "/dev/console" "device" "console"))
@@ -351,6 +284,7 @@ needed."
     (rename-file (scope "dev/console") (scope "dev/console-")))
   (for-each scope-set-translator devices)
 
+  (false-if-EEXIST (symlink "/dev/random" (scope "dev/urandom")))
   (false-if-EEXIST (symlink "/dev/fd/0" (scope "dev/stdin")))
   (false-if-EEXIST (symlink "/dev/fd/1" (scope "dev/stdout")))
   (false-if-EEXIST (symlink "/dev/fd/2" (scope "dev/stderr")))

gnu/build/image.scm

@@ -322,7 +322,7 @@ register-closure."
 
   ;; Populate /dev.
   (when make-device-nodes
-    (make-device-nodes #:root root))
+    (make-device-nodes root))
 
   (when register-closures?
     (unless copy-closures?

gnu/home/services/ssh.scm

@@ -70,11 +70,6 @@
             openssh-host-proxy-command
             openssh-host-host-key-algorithms
             openssh-host-accepted-key-types
-            openssh-host-control-master
-            openssh-host-control-file-name
-            openssh-host-control-persist
-            openssh-host-sent-environment-variables
-            openssh-host-environment-variables
             openssh-host-extra-content
             proxy-jump
             proxy-jump-host-name
@@ -89,9 +84,6 @@
 (define (serialize-field-name name)
   (match name
     ('accepted-key-types "PubkeyAcceptedKeyTypes")
-    ('sent-environment-variables "SendEnv")
-    ('environment-variables "SetEnv")
-    ('control-file-name "ControlPath")
     (_
      (let ((name (let ((str (symbol->string name)))
                    (if (string-suffix? "?" str)
@@ -138,14 +130,6 @@
 (define-maybe string)
 (define-maybe natural-number)
 
-(define (serialize-symbol field value)
-  (if (maybe-value-set? value)
-      (string-append "  " (serialize-field-name field) " "
-                     (symbol->string value) "\n")
-      ""))
-
-(define-maybe symbol)
-
 (define (serialize-raw-configuration-string field value)
   (string-append value "\n"))
 (define raw-configuration-string? string?)
@@ -158,33 +142,6 @@
 
 (define-maybe string-list)
 
-(define (env-list? lst)
-  (string-list? lst))
-
-(define (serialize-env-list field lst)
-  (string-append "  " (serialize-field-name field) " "
-                 (string-join lst " ") "\n"))
-
-(define-maybe env-list)
-
-(define (string-alist? lst)
-  (and (list? lst)
-       (every (lambda (x)
-                (and (pair? x)
-                     (string? (car x))
-                     (string? (cdr x))))
-              lst)))
-
-(define (serialize-string-alist field lst)
-  (string-append "  " (serialize-field-name field) " "
-                 (string-join
-                  (map (match-lambda
-                         ((key . value)
-                          (format #nil "~s" (string-append key "=" value))))
-                       lst) " ") "\n"))
-
-(define-maybe string-alist)
-
 (define-record-type <proxy-command>
   (proxy-command command)
   proxy-command?
@@ -318,31 +275,6 @@ through before connecting to the server.")
   (accepted-key-types
    maybe-string-list
    "The list of accepted user public key types.")
-  (control-master
-   maybe-symbol
-   "Enables the sharing of multiple sessions over a single network connection.
-Acceptable values are @code{'no}, @code{'yes}, @code{'auto}, @code{'ask}, and
-@code{'autoask}.")
-  (control-file-name
-   maybe-string
-   "The file name of the control socket used for connection sharing, or
-@code{\"none\"} to disable connection sharing.")
-  (control-persist
-   maybe-string
-   "When used in conjunction with @env{control-master}, specifies that the
-master connection should remain open in the background (waiting for future
-client connections) after the initial client connection has been closed.")
-  (sent-environment-variables
-   maybe-env-list
-   "Specifies which variables from the local environment should be sent to the
-server.  The server must also support it, and the server must be configured to
-accept those environment variables.")
-  (environment-variables
-   maybe-string-alist
-   "List of environment variables with corresponding values to send to the
-server, as an alist of strings of the form @code{'(\"@var{variable}\"
-. \"@var{value}\")}.  The server must also support it, and the server must be
-configured to accept those environment variables.")
   (extra-content
    (raw-configuration-string "")
    "Extra content appended as-is to this @code{Host} block in

gnu/local.mk

@@ -76,7 +76,6 @@
 # Copyright © 2025 Nigko Yerden <nigko.yerden@gmail.com>
 # Copyright © 2025 Cayetano Santos <csantosb@inventati.org>
 # Copyright © 2025 bdunahu <bdunahu@operationnull.com>
-# Copyright © 2026 Simen Endsjø <contact@simendsjo.me>
 #
 # This file is part of GNU Guix.
 #
@@ -209,7 +208,6 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/cobol.scm			\
   %D%/packages/code.scm				\
   %D%/packages/commencement.scm			\
-  %D%/packages/compiler-tools.scm		\
   %D%/packages/compression.scm			\
   %D%/packages/compton.scm 			\
   %D%/packages/computer-architecture.scm	\
@@ -236,7 +234,6 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/darwin.scm			\
   %D%/packages/data-language.scm		\
   %D%/packages/databases.scm			\
-  %D%/packages/datalog.scm			\
   %D%/packages/datamash.scm			\
   %D%/packages/datastructures.scm		\
   %D%/packages/dav.scm				\
@@ -344,7 +341,6 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/golang-check.scm		\
   %D%/packages/golang-compression.scm		\
   %D%/packages/golang-crypto.scm	      	\
-  %D%/packages/golang-graphics.scm	\
   %D%/packages/golang-maths.scm		\
   %D%/packages/golang-vcs.scm	        	\
   %D%/packages/golang-web.scm	        	\
@@ -733,6 +729,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/zig.scm				\
   %D%/packages/zig-xyz.scm			\
   %D%/packages/zile.scm				\
+  %D%/packages/zwave.scm			\
 						\
   %D%/services.scm				\
   %D%/services/admin.scm			\
@@ -759,7 +756,6 @@ GNU_SYSTEM_MODULES =				\
   %D%/services/docker.scm			\
   %D%/services/authentication.scm		\
   %D%/services/file-sharing.scm			\
-  %D%/services/firmware.scm			\
   %D%/services/games.scm			\
   %D%/services/ganeti.scm			\
   %D%/services/getmail.scm				\
@@ -1004,7 +1000,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/akonadi-not-relocatable.patch		\
   %D%/packages/patches/akonadi-timestamps.patch		\
   %D%/packages/patches/alure-dumb-2.patch			\
-  %D%/packages/patches/amd-smi-newer-libdrm.patch		\
   %D%/packages/patches/amd-smi-python.patch			\
   %D%/packages/patches/ibus-anthy-fix-tests.patch		\
   %D%/packages/patches/ibus-table-paths.patch			\
@@ -1022,7 +1017,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/ath9k-htc-firmware-gcc.patch		\
   %D%/packages/patches/ath9k-htc-firmware-gcc-compat.patch	\
   %D%/packages/patches/atlas-gfortran-compat.patch		\
-  %D%/packages/patches/aubio-waflib-python312-compat.patch	\
   %D%/packages/patches/audacity-ffmpeg-fallback.patch		\
   %D%/packages/patches/audiofile-fix-datatypes-in-tests.patch	\
   %D%/packages/patches/audiofile-fix-sign-conversion.patch	\
@@ -1105,6 +1099,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/cdparanoia-fpic.patch			\
   %D%/packages/patches/cdrkit-libre-cross-compile.patch	\
   %D%/packages/patches/cdrtools-3.01-mkisofs-isoinfo.patch 	\
+  %D%/packages/patches/ceph-fix-cmake.patch                     \
   %D%/packages/patches/cf-tool-add-languages.patch		\
   %D%/packages/patches/chmlib-inttypes.patch			\
   %D%/packages/patches/cl-ana-pr-49.patch			\
@@ -1137,8 +1132,11 @@ dist_patch_DATA =						\
   %D%/packages/patches/clog-fix-shared-build.patch		\
   %D%/packages/patches/clucene-gcc-14.patch			\
   %D%/packages/patches/clucene-pkgconfig.patch			\
+  %D%/packages/patches/coda-use-system-libs.patch		\
   %D%/packages/patches/codex-acp-0.11.1-disable-code-mode.patch \
   %D%/packages/patches/codex-acp-0.11.1-remove-patch-sections.patch \
+  %D%/packages/patches/codex-0.98.0-remove-patch-sections.patch    \
+  %D%/packages/patches/rust-codex-0.117.0-remove-patch-sections.patch    \
   %D%/packages/patches/cogl-fix-double-free.patch		\
   %D%/packages/patches/collada-dom-boost.patch			\
   %D%/packages/patches/collectd-5.11.0-noinstallvar.patch	\
@@ -1170,6 +1168,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/cryfs-boost-1.89-fix.patch		\
   %D%/packages/patches/csvkit-set-locale-for-tests.patch			\
   %D%/packages/patches/ctranslate2-local-build.patch		\
+  %D%/packages/patches/ctune-cmake-disable-git-clone.patch		\
   %D%/packages/patches/cube-nocheck.patch			\
   %D%/packages/patches/cups-relax-root-ownership-check.patch		\
   %D%/packages/patches/cura-engine-gcc-14.patch			\
@@ -1180,6 +1179,8 @@ dist_patch_DATA =						\
   %D%/packages/patches/curlftpfs-fix-memory-leak.patch		\
   %D%/packages/patches/curlftpfs-fix-no_verify_hostname.patch	\
   %D%/packages/patches/cursynth-wave-rand.patch			\
+  %D%/packages/patches/cvc5-reproducible-build.patch		\
+  %D%/packages/patches/cvc5-symfpu-compatibility.patch		\
   %D%/packages/patches/cvs-CVE-2017-12836.patch		\
   %D%/packages/patches/cyrus-sasl-fix-time-h.patch              \
   %D%/packages/patches/d-feet-drop-unused-meson-argument.patch	\
@@ -1189,7 +1190,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/date-output-pkg-config-files.patch	\
   %D%/packages/patches/dbacl-include-locale.h.patch		\
   %D%/packages/patches/dbacl-icheck-multiple-definitions.patch	\
-  %D%/packages/patches/dblatex-importlib.patch		\
   %D%/packages/patches/dblatex-inkscape-1.0.patch		\
   %D%/packages/patches/dbus-helper-search-path.patch		\
   %D%/packages/patches/ddd-build.patch				\
@@ -1300,7 +1300,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/fbgemm-use-system-libraries.patch	\
   %D%/packages/patches/fbreader-curl-7.62.patch		\
   %D%/packages/patches/fbreader-fix-icon.patch		\
-  %D%/packages/patches/fdroidcl-fix-tests.patch		\
   %D%/packages/patches/fenics-dolfin-algorithm.patch		\
   %D%/packages/patches/fenics-dolfin-demo-init.patch		\
   %D%/packages/patches/fenics-dolfin-boost.patch		\
@@ -1367,8 +1366,16 @@ dist_patch_DATA =						\
   %D%/packages/patches/ganeti-disable-version-symlinks.patch	\
   %D%/packages/patches/ganeti-haskell-pythondir.patch		\
   %D%/packages/patches/ganeti-lens-compat.patch			\
+  %D%/packages/patches/ganeti-openssh-test-fix.patch		\
+  %D%/packages/patches/ganeti-pyyaml-compat.patch		\
+  %D%/packages/patches/ganeti-procps-compat.patch		\
+  %D%/packages/patches/ganeti-reorder-arbitrary-definitions.patch	\
+  %D%/packages/patches/ganeti-relax-dependencies.patch		\
   %D%/packages/patches/ganeti-shepherd-master-failover.patch	\
   %D%/packages/patches/ganeti-shepherd-support.patch		\
+  %D%/packages/patches/ganeti-sphinx-import.patch		\
+  %D%/packages/patches/ganeti-template-haskell-2.17.patch	\
+  %D%/packages/patches/ganeti-template-haskell-2.18.patch	\
   %D%/packages/patches/gawk-shell.patch				\
   %D%/packages/patches/gcc-arm-bug-71399.patch			\
   %D%/packages/patches/gcc-arm-link-spec-fix.patch		\
@@ -1508,8 +1515,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/glibc-reinstate-prlimit64-fallback.patch	\
   %D%/packages/patches/glibc-supported-locales.patch     	\
   %D%/packages/patches/glibc-versioned-locpath.patch		\
-  %D%/packages/patches/glog-windows-h-nonwindows.patch		\
-  %D%/packages/patches/glycin-sandbox-Adapt-bwrap-invocation.patch	\
   %D%/packages/patches/gmime-disable-tests.patch		\
   %D%/packages/patches/gmp-arm-asm-nothumb.patch		\
   %D%/packages/patches/gmp-faulty-test.patch			\
@@ -1584,9 +1589,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/gtk3-respect-GUIX_GTK3_PATH.patch	\
   %D%/packages/patches/gtk3-respect-GUIX_GTK3_IM_MODULE_FILE.patch \
   %D%/packages/patches/gtk-doc-respect-xml-catalog.patch	\
-  %D%/packages/patches/gtk-doc-mkhtml-test-fix.patch	        \
-  %D%/packages/patches/gtk4-demo-reproducible.patch             \
-  %D%/packages/patches/gtk4-needs-udmabuf.patch                 \
+  %D%/packages/patches/gtk-doc-mkhtml-test-fix.patch	\
   %D%/packages/patches/gtk4-respect-GUIX_GTK4_PATH.patch    	\
   %D%/packages/patches/gtkglext-disable-disable-deprecated.patch \
   %D%/packages/patches/gtksourceview-2-add-default-directory.patch \
@@ -1664,7 +1667,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/isl-0.11.1-aarch64-support.patch		\
   %D%/packages/patches/ispell-for-linphone-cmake.patch		\
   %D%/packages/patches/jami-avutil-link.patch   		\
-  %D%/packages/patches/jami-libjami-cmake.patch			\
   %D%/packages/patches/jamvm-1.5.1-aarch64-support.patch	\
   %D%/packages/patches/jamvm-1.5.1-armv7-support.patch	\
   %D%/packages/patches/jamvm-2.0.0-aarch64-support.patch	\
@@ -1747,6 +1749,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/kio-search-smbd-on-PATH.patch		\
   %D%/packages/patches/kismet-unbundle-boost.patch		\
   %D%/packages/patches/kissfft-tflite-micro.patch               \
+  %D%/packages/patches/kitty-fix-wayland-protocols.patch	\
   %D%/packages/patches/kmod-module-directory.patch		\
   %D%/packages/patches/kmscon-8-runtime-keymap-switch.patch	\
   %D%/packages/patches/knot-remove-runtime-deps.patch		\
@@ -1861,7 +1864,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/linux-libre-arm64-mnt-reform-revert-vop2-display-modes.patch	\
   %D%/packages/patches/linux-pam-no-setfsuid.patch		\
   %D%/packages/patches/linux-pam-unix_chkpwd.patch		\
-  %D%/packages/patches/linux-shmem-hurd-xattr.patch		\
   %D%/packages/patches/lirc-localstatedir.patch			\
   %D%/packages/patches/lirc-reproducible-build.patch		\
   %D%/packages/patches/llvm-13-gcc-14.patch			\
@@ -1883,6 +1885,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/lua-5.x-search-path-helpers.patch	\
   %D%/packages/patches/lua-lgi-fix-pango.patch			\
   %D%/packages/patches/lua-lgi-fix-ref.patch			\
+  %D%/packages/patches/luanti-paths.patch			\
   %D%/packages/patches/lugaru-fix-sound.patch			\
   %D%/packages/patches/luit-posix.patch				\
   %D%/packages/patches/lxc-no-static-bin.patch	\
@@ -1941,6 +1944,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/modglue-fix-build.patch		\
   %D%/packages/patches/modem-manager-fix-test-wrapper.patch	\
   %D%/packages/patches/module-init-tools-moduledir.patch	\
+  %D%/packages/patches/monero-use-system-miniupnpc.patch			\
   %D%/packages/patches/mono-1.2.6-bootstrap.patch		\
   %D%/packages/patches/mono-1.9.1-add-MONO_CREATE_IMAGE_VERSION.patch		\
   %D%/packages/patches/mono-1.9.1-fixes.patch			\
@@ -1981,7 +1985,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/netbeans-25-nativeexecution-paths.patch \
   %D%/packages/patches/netbeans-25-terminal-no-login-shell.patch \
   %D%/packages/patches/netbeans-25-source-only-build.patch	\
-  %D%/packages/patches/netbeans-25-wayland-font-rendering.patch	\
   %D%/packages/patches/netpbm-CVE-2017-2586.patch		\
   %D%/packages/patches/netpbm-CVE-2017-2587.patch		\
   %D%/packages/patches/netsurf-message-timestamp.patch		\
@@ -2007,13 +2010,10 @@ dist_patch_DATA =						\
   %D%/packages/patches/nss-3.115-disable-broken-tests.patch     \
   %D%/packages/patches/nss-3.115-disable-pkix-ocsp-tests.patch  \
   %D%/packages/patches/ntp-fix-dereferencing-the-wrong-variable.patch   \
-  %D%/packages/patches/ntfs-3g-autoconf-sbin-helpers.patch   \
-  %D%/packages/patches/ntfs-3g-consistent-sbindir-usage.patch   \
   %D%/packages/patches/nvi-add-function-prototypes.patch	\
   %D%/packages/patches/nvi-assume-preserve-path.patch		\
   %D%/packages/patches/nvi-dbpagesize-binpower.patch		\
   %D%/packages/patches/nvi-db4.patch				\
-  %D%/packages/patches/obs-advanced-masks-nlohmann-json.patch	\
   %D%/packages/patches/obs-modules-location.patch		\
   %D%/packages/patches/ocaml-ctypes-test-oo.patch		\
   %D%/packages/patches/ocaml-multiple-definitions.patch		\
@@ -2076,6 +2076,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/openssl-3.0-c-rehash-in.patch		\
   %D%/packages/patches/openssl-hurd64.patch			\
   %D%/packages/patches/opentaxsolver-file-browser-fix.patch     \
+  %D%/packages/patches/open-zwave-hidapi.patch			\
   %D%/packages/patches/opusfile-CVE-2022-47021.patch		\
   %D%/packages/patches/orbit2-fix-array-allocation-32bit.patch \
   %D%/packages/patches/orca-fix-gst-init-check-call.patch \
@@ -2109,7 +2110,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-3.11-fix-tests.patch		\
   %D%/packages/patches/python-3.12-fix-tests.patch		\
   %D%/packages/patches/python-anyio-unuse-exceptiongroup-in-test.patch	\
-  %D%/packages/patches/python-beangulp-click-8.2-compat.patch	\
   %D%/packages/patches/python-bed-reader-use-store-samples.patch	\
   %D%/packages/patches/python-chai-drop-python2.patch		\
   %D%/packages/patches/python-clarabel-blas.patch		\
@@ -2132,20 +2132,16 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-pyreadstat-link-libiconv.patch	\
   %D%/packages/patches/python-sip-include-dirs.patch	\
   %D%/packages/patches/python-scikit-build-setuptools-compat.patch	\
-  %D%/packages/patches/python-scikit-image-fix-python-pillow.patch	\
   %D%/packages/patches/python-sgmllib3k-assertions.patch	\
   %D%/packages/patches/python-sphobjinv-defer-ssl-import.patch	\
   %D%/packages/patches/python-sphinx-prompt-docutils-0.19.patch	\
   %D%/packages/patches/python-sshtunnel-pep518.patch	\
   %D%/packages/patches/python-zeroc-ice-3.6.5-python-3.11-support.patch	\
-  %D%/packages/patches/python-zeroc-ice-3.6.5-python-3.12-support.patch	\
-  %D%/packages/patches/python-zipfile2-python-3.12-support.patch	\
   %D%/packages/patches/qcodeeditor-qt6.patch			\
   %D%/packages/patches/qtdeclarative-5-disable-qmlcache.patch	\
   %D%/packages/patches/qtdeclarative-disable-qmlcache.patch	\
   %D%/packages/patches/qtlocation-5.15.8-mapboxgl-gcc13.patch	\
   %D%/packages/patches/qtwebengine-revert-egl.patch		\
-  %D%/packages/patches/qtwebengine5-python312-six-compat.patch	\
   %D%/packages/patches/quodlibet-disable-bundled-packages.patch	\
   %D%/packages/patches/qxlsx-fix-include-directory.patch	\
   %D%/packages/patches/schiffbruch-fix-build-for-gcc-13.patch	\
@@ -2255,7 +2251,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-piexif-fix-tests-with-pillow-7.2.patch	\
   %D%/packages/patches/python-pillow-CVE-2022-45199.patch	\
   %D%/packages/patches/python-libxml2-utf8.patch		\
-  %D%/packages/patches/python-lsp-server-python-3.13-compatibility.patch	\
   %D%/packages/patches/python-memcached-syntax-warnings.patch	\
   %D%/packages/patches/python-mslice-matplotlib-3.6-compatibility.patch	\
   %D%/packages/patches/python-packaging-test-arch.patch		\
@@ -2271,7 +2266,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-pytorch-system-libraries.patch	\
   %D%/packages/patches/python-pytorch-without-kineto.patch	\
   %D%/packages/patches/python-robotframework-sshlibrary-rf5-compat.patch \
-  %D%/packages/patches/python-py-ubjson-recursion-test.patch	\
   %D%/packages/patches/python-vaex-core-fix-tsl-use.patch	\
   %D%/packages/patches/python-vega-datasets-remove-la-riots-code.patch	\
   %D%/packages/patches/python-versioneer-guix-support.patch	\
@@ -2293,6 +2287,8 @@ dist_patch_DATA =						\
   %D%/packages/patches/qtbase-5-use-TZDIR.patch			\
   %D%/packages/patches/qtscript-disable-tests.patch		\
   %D%/packages/patches/quagga-reproducible-build.patch          \
+  %D%/packages/patches/quickjs-ng-64-bits-precision-on-i686.patch	\
+  %D%/packages/patches/quickjs-ng-fix-atomics.pause-on-32-bit.patch	\
   %D%/packages/patches/quilt-grep-compat.patch 			\
   %D%/packages/patches/qmk-firmware-fix-hacker-dvorak.patch 	\
   %D%/packages/patches/qtwayland-update-wayland-xml.patch	\
@@ -2416,8 +2412,13 @@ dist_patch_DATA =						\
   %D%/packages/patches/rust-1.78-unwinding-fix.patch		\
   %D%/packages/patches/rust-1.81-fix-riscv64-bootstrap.patch	\
   %D%/packages/patches/rust-candle-0.9.1-add-candle-onnx-to-workspace.patch	\
+  %D%/packages/patches/rust-codex-0.98.0-core-remove-self-dep.patch	\
   %D%/packages/patches/rust-codex-0.98.0-test-shebangs.patch	\
+  %D%/packages/patches/rust-codex-0.98.0-test-timeout.patch	\
+  %D%/packages/patches/rust-codex-0.98.0-windows-sandbox-protocol-version.patch	\
   %D%/packages/patches/rust-codex-0.117.0-core-remove-self-dep.patch	\
+  %D%/packages/patches/rust-codex-0.120.0-core-remove-self-dep.patch	\
+  %D%/packages/patches/rust-codex-0.120.0-connectors-cache-test-race.patch	\
   %D%/packages/patches/rust-codex-0.120.0-remove-libwebrtc.patch	\
   %D%/packages/patches/rust-codex-0.120.0-test-timeout.patch	\
   %D%/packages/patches/rust-codex-0.124.0-code-mode-stub-toolname.patch	\
@@ -2432,6 +2433,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/sajson-build-with-gcc10.patch		\
   %D%/packages/patches/sane-look-for-plugins-in-SANE_BACKEND_LIB_PATH.patch	\
   %D%/packages/patches/sbc-fix-build-non-x86.patch		\
+  %D%/packages/patches/sbcl-fix-arm64-shared-lib.patch		\
   %D%/packages/patches/sbcl-aserve-add-HTML-5-elements.patch	\
   %D%/packages/patches/sbcl-aserve-fix-rfe12668.patch	\
   %D%/packages/patches/sbcl-burgled-batteries3-fix-signals.patch	\
@@ -2457,6 +2459,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/seq24-rename-mutex.patch			\
   %D%/packages/patches/libsequoia-fix-ffi-Makefile.patch	\
   %D%/packages/patches/libsequoia-remove-store.patch		\
+  %D%/packages/patches/shakespeare-spl-fix-grammar.patch		\
   %D%/packages/patches/shared-mime-info-xdgmime-path.patch	\
   %D%/packages/patches/sharutils-CVE-2018-1000097.patch		\
   %D%/packages/patches/showtime-python-3.11-compat.patch        \
@@ -2526,6 +2529,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/texmacs-wayland-hidpi.patch	\
   %D%/packages/patches/tflite-micro_disable_download.patch 	\
   %D%/packages/patches/thefuck-test-environ.patch		\
+  %D%/packages/patches/thefuck-remove-broken-tests.patch	\
   %D%/packages/patches/tidy-CVE-2015-5522+5523.patch		\
   %D%/packages/patches/timewarrior-time-sensitive-tests.patch	\
   %D%/packages/patches/tinydir-fix-cbehave-test.patch		\
@@ -2541,7 +2545,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/transcode-ffmpeg.patch	\
   %D%/packages/patches/trytond-add-guix_trytond_path.patch	\
   %D%/packages/patches/ttf2eot-cstddef.patch			\
-  %D%/packages/patches/tuir-python-3.12-support.patch	\
   %D%/packages/patches/tuxpaint-stamps-path.patch		\
   %D%/packages/patches/tvm_fix_cpptest_build.patch              \
   %D%/packages/patches/twinkle-bcg729.patch			\
@@ -2619,7 +2622,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/webrtc-audio-processing-big-endian.patch	\
   %D%/packages/patches/webrtc-audio-processing-byte-order-pointer-size.patch \
   %D%/packages/patches/webrtc-audio-processing-x86-no-sse.patch	\
-  %D%/packages/patches/websocketpp-boost-compat.patch		\
   %D%/packages/patches/websocketpp-fix-for-cmake-3.15.patch	\
   %D%/packages/patches/wmctrl-64-fix.patch			\
   %D%/packages/patches/wmfire-dont-inline-draw-fire.patch	\

gnu/machine/hetzner.scm

@@ -2,7 +2,6 @@
 ;;; Copyright © 2024 Roman Scherer <roman@burningswell.com>
 ;;; Copyright © 2025 Owen T. Heisler <writer@owenh.net>
 ;;; Copyright © 2025 Remco van 't Veer <remco@remworks.net>
-;;; Copyright © 2026 Maxim Cournoyer <maxim@guixotic.coop>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -37,7 +36,6 @@
   #:use-module (gnu system)
   #:use-module (guix base32)
   #:use-module (guix colors)
-  #:use-module (guix deprecation)
   #:use-module (guix derivations)
   #:use-module (guix diagnostics)
   #:use-module (guix gexp)
@@ -57,7 +55,6 @@
   #:use-module (ice-9 string-fun)
   #:use-module (ice-9 textual-ports)
   #:use-module (json)
-  #:use-module ((rnrs base) #:select (assert))
   #:use-module (srfi srfi-1)
   #:use-module (srfi srfi-2)
   #:use-module (srfi srfi-34)
@@ -69,10 +66,8 @@
   #:use-module (ssh session)
   #:use-module (ssh sftp)
   #:use-module (ssh shell)
-  #:export (%hetzner-os-arm             ;deprecated
-            %hetzner-os-x86             ;deprecated
-            make-hetzner-os
-
+  #:export (%hetzner-os-arm
+            %hetzner-os-x86
             deploy-hetzner
             hetzner-configuration
             hetzner-configuration-allow-downgrades?
@@ -87,7 +82,6 @@
             hetzner-configuration-server-type
             hetzner-configuration-ssh-key
             hetzner-configuration-ssh-public-key
-            hetzner-configuration-user
             hetzner-configuration?
             hetzner-environment-type))
 
@@ -104,7 +98,7 @@
 
 ;; Operating system for arm servers using UEFI boot mode.
 
-(define %hetzner-os-arm/efi
+(define %hetzner-os-arm
   (operating-system
     (host-name "guix-arm")
     (bootloader
@@ -134,9 +128,9 @@
 
 ;; Operating system for x86 servers using BIOS boot mode.
 
-(define %hetzner-os-x86/bios
+(define %hetzner-os-x86
   (operating-system
-    (inherit %hetzner-os-arm/efi)
+    (inherit %hetzner-os-arm)
     (host-name "guix-x86")
     (bootloader
      (bootloader-configuration
@@ -152,51 +146,6 @@
              (type "ext4"))
            %base-file-systems))))
 
-(define %hetzner-os-x86/efi
-  (operating-system
-    (inherit %hetzner-os-arm/efi)
-    (host-name "guix-x86")
-    (initrd-modules
-     (cons "virtio_scsi" %base-initrd-modules))))
-
-(define (server-type-name->arch type-name)
-  "Return a symbol corresponding to the server type architecture, e.g.
-@code{'x86} or @code{'arm}."
-  (cond
-    ((string-prefix-ci? "cax" type-name)
-     'arm)
-    (else
-     'x86)))
-
-(define (server-type-name->bootloader type-name)
-  "Return a symbol corresponding to the bootloader type, e.g.
-@code{'efi} or @code{'bios}."
-  (if (eq? 'arm (server-type-name->arch type-name))
-      'efi
-      (cond
-       ((string-prefix-ci? "cx" type-name)
-        'bios)                          ;old, cost-optimized x86 servers
-       (else
-        'efi))))           ;newer, regular performance/general purpose servers
-
-(define* (make-hetzner-os server-type-name)
-  "Return an operating server customized for SERVER-TYPE-NAME, a string like
-\"cx23\" or \"cax11\", denoting the Hetzner virtual server type."
-  (match (server-type-name->arch server-type-name)
-    ('arm %hetzner-os-arm/efi)
-    ('x86
-     (match (server-type-name->bootloader server-type-name)
-       ('bios %hetzner-os-x86/bios)
-       ('efi %hetzner-os-x86/efi)))))
-
-(define-deprecated %hetzner-os-x86
-  make-hetzner-os
-  %hetzner-os-x86/bios)
-
-(define-deprecated %hetzner-os-arm
-  make-hetzner-os
-  %hetzner-os-arm/efi)
-
 (define (operating-system-authorize os)
   "Authorize the OS with the public signing key of the current machine."
   (if (file-exists? %public-key-file)
@@ -242,11 +191,6 @@ Have you run 'guix archive --generate-key'?")
 ;;; Hetzner configuration.
 ;;;
 
-;;; This parameter overrides the value returned by
-;;; `hetzner-configuration-ssh-key'.
-(define %hetzner-ssh-key-file
-  (make-parameter #f))
-
 (define-record-type* <hetzner-configuration> hetzner-configuration
   make-hetzner-configuration hetzner-configuration? this-hetzner-configuration
   (allow-downgrades? hetzner-configuration-allow-downgrades? ; boolean
@@ -258,7 +202,7 @@ Have you run 'guix archive --generate-key'?")
   (build-locally? hetzner-configuration-build-locally? ; boolean
                   (default #t))
   (delete? hetzner-configuration-delete? ; boolean
-           (default #t))
+           (default #f))
   (labels hetzner-configuration-labels ; list of strings
           (default '()))
   (location hetzner-configuration-location ; #f | string
@@ -269,39 +213,26 @@ Have you run 'guix archive --generate-key'?")
         (default #t))
   (ipv6 hetzner-configuration-ipv6      ; boolean | string
         (default #t))
-  (ssh-public-key hetzner-configuration-ssh-public-key* ; #f | public-key | string
+  (ssh-public-key hetzner-configuration-ssh-public-key ; public-key | string
                   (thunked)
-                  (default (and=> (hetzner-configuration-ssh-key
-                                   this-hetzner-configuration)
-                                  public-key-from-file))
-                  (sanitize (lambda (value)
-                              (if (string? value)
-                                  (public-key-from-file value)
-                                  value))))
-  (ssh-key hetzner-configuration-ssh-key* ; #f | string
-           (default #f))
-  (user hetzner-configuration-user      ;string
-        (default "root")))
+                  (default (public-key-from-file (hetzner-configuration-ssh-key this-hetzner-configuration)))
+                  (sanitize
+                   (lambda (value)
+                     (if (string? value) (public-key-from-file value) value))))
+  (ssh-key hetzner-configuration-ssh-key
+           (default #f))) ; #f | string
 
-(define (hetzner-configuration-ssh-key config)
-  (or (%hetzner-ssh-key-file)
-      (hetzner-configuration-ssh-key* config)))
-
-(define (hetzner-configuration-ssh-public-key config)
-  (or (and=> (%hetzner-ssh-key-file) public-key-from-file)
-      (hetzner-configuration-ssh-public-key* config)))
-
-(define (public-key->fingerprint public-key)
-  "Return the SSH public key fingerprint of PUBLIC-KEY, a Guile-SSH public key
-object, in the expected format for the Hetzner API."
-  (let ((hash (get-public-key-hash public-key 'md5)))
+(define (hetzner-configuration-ssh-key-fingerprint config)
+  "Return the SSH public key fingerprint of CONFIG as a string."
+  (and-let* ((pubkey (hetzner-configuration-ssh-public-key config))
+             (hash (get-public-key-hash pubkey 'md5)))
     (bytevector->hex-string hash)))
 
-(define (public-key->string-with-type public-key)
-  "Return the SSH public key string of PUBLIC-KEY, a Guile-SSH public key
-object, in the expected format for the Hetzner API."
-  (format #f "ssh-~a ~a" (get-key-type public-key)
-          (public-key->string public-key)))
+(define (hetzner-configuration-ssh-key-public config)
+  "Return the SSH public key of CONFIG as a string."
+  (let ((public-key (hetzner-configuration-ssh-public-key config)))
+    (format #f "ssh-~a ~a" (get-key-type public-key)
+            (public-key->string public-key))))
 
 
 ;;;
@@ -314,26 +245,21 @@ object, in the expected format for the Hetzner API."
          ;; Get the operating system WITHOUT the provenance service to avoid a
          ;; duplicate symlink conflict in the store.
          (os ((@@ (gnu machine) %machine-operating-system) target)))
-    (match-record config <hetzner-configuration>
-                  ( authorize? allow-downgrades? build-locally? user)
-      (machine
-        (inherit target)
-        (operating-system
-          (if authorize?
-              (operating-system-authorize os)
-              os))
-        (environment managed-host-environment-type)
-        (configuration
-         (machine-ssh-configuration
-           (allow-downgrades? allow-downgrades?)
-           (authorize? authorize?)
-           (build-locally? build-locally?)
-           (host-name (hetzner-server-public-ipv4 server))
-           ;; XXX: match-record doesn't make use of custom accessors to obtain
-           ;; the value, so we can't bind SSH-KEY with it.
-           (identity (hetzner-configuration-ssh-key config))
-           (system (hetzner-server-system server))
-           (user user)))))))
+    (machine
+     (inherit target)
+     (operating-system
+       (if (hetzner-configuration-authorize? config)
+           (operating-system-authorize os)
+           os))
+     (environment managed-host-environment-type)
+     (configuration
+      (machine-ssh-configuration
+       (allow-downgrades? (hetzner-configuration-allow-downgrades? config))
+       (authorize? (hetzner-configuration-authorize? config))
+       (build-locally? (hetzner-configuration-build-locally? config))
+       (host-name (hetzner-server-public-ipv4 server))
+       (identity (hetzner-configuration-ssh-key config))
+       (system (hetzner-server-system server)))))))
 
 (define (hetzner-machine-location machine)
   "Find the location of MACHINE on the Hetzner API."
@@ -437,43 +363,45 @@ Available locations:~%~%~a~%~%For more details, see: ~a")
   "Return the form to bootstrap an operating system on SERVER."
   (let* ((os (machine-operating-system machine))
          (system (hetzner-server-system server))
-         (type-name (hetzner-server-type-name (hetzner-server-type server)))
          (arm? (equal? "arm" (hetzner-server-architecture server)))
          (x86? (equal? "x86" (hetzner-server-architecture server)))
-         (efi? (equal? 'efi (server-type-name->bootloader type-name)))
          (root-fs-type (operating-system-root-file-system-type os)))
     `(operating-system
        (host-name ,(operating-system-host-name os))
        (timezone "Etc/UTC")
        (bootloader (bootloader-configuration
-                     (bootloader ,(if efi?
-                                      'grub-efi-bootloader
-                                      'grub-bootloader))
-                     (targets ,(if efi?
-                                   '(list "/boot/efi")
-                                   '(list "/dev/sda")))
-                     (terminal-outputs '(console))))
+                    (bootloader ,(cond (arm? 'grub-efi-bootloader)
+                                       (x86? 'grub-bootloader)))
+                    (targets ,(cond (arm? '(list "/boot/efi"))
+                                    (x86? '(list "/dev/sda"))))
+                    (terminal-outputs '(console))))
        (initrd-modules (append
                         ,(cond (arm? '(list "sd_mod" "virtio_scsi"))
                                (x86? '(list "virtio_scsi")))
                         %base-initrd-modules))
-       (file-systems (cons* (file-system
-                              (mount-point "/")
-                              (device "/dev/sda1")
-                              (type ,root-fs-type))
-                            ,@(if efi?
-                                  '((file-system
-                                      (mount-point "/boot/efi")
-                                      (device "/dev/sda15")
-                                      (type "vfat")))
-                                  '())
-                            %base-file-systems))
+       (file-systems ,(cond
+                       (arm? `(cons* (file-system
+                                       (mount-point "/")
+                                       (device "/dev/sda1")
+                                       (type ,root-fs-type))
+                                     (file-system
+                                       (mount-point "/boot/efi")
+                                       (device "/dev/sda15")
+                                       (type "vfat"))
+                                     %base-file-systems))
+                       (x86? `(cons* (file-system
+                                       (mount-point "/")
+                                       (device "/dev/sda1")
+                                       (type ,root-fs-type))
+                                     %base-file-systems))))
        (services
-        (cons* (service dhcpcd-service-type)
+        ;; guix 1.4.0 does not have dhcpcd-service-type,
+        ;; so we use dhcp-client-service-type here.
+        (cons* (service dhcp-client-service-type)
                (service openssh-service-type
                         (openssh-configuration
-                          (openssh openssh-sans-x)
-                          (permit-root-login 'prohibit-password)))
+                         (openssh openssh-sans-x)
+                         (permit-root-login 'prohibit-password)))
                %base-services)))))
 
 (define (rexec-verbose session cmd)
@@ -495,9 +423,8 @@ values: list of output lines returned by CMD and its exit code."
 
 (define (hetzner-machine-ssh-key machine)
   "Find the SSH key for MACHINE on the Hetzner API."
-  (and-let* ((config (machine-configuration machine))
-             (public-key (hetzner-configuration-ssh-public-key config))
-             (expected (public-key->fingerprint public-key)))
+  (let* ((config (machine-configuration machine))
+         (expected (hetzner-configuration-ssh-key-fingerprint config)))
     (find (lambda (ssh-key)
             (equal? expected (hetzner-ssh-key-fingerprint ssh-key)))
           (hetzner-api-ssh-keys
@@ -510,12 +437,10 @@ values: list of output lines returned by CMD and its exit code."
     (format #t "creating ssh key for '~a'...\n" name)
     (let* ((config (machine-configuration machine))
            (api (hetzner-configuration-api config))
-           (pubkey (hetzner-configuration-ssh-public-key config))
-           (_ (assert pubkey))
            (ssh-key (hetzner-api-ssh-key-create
-                     api
-                     (public-key->fingerprint pubkey)
-                     (public-key->string-with-type pubkey)
+                     (hetzner-configuration-api config)
+                     (hetzner-configuration-ssh-key-fingerprint config)
+                     (hetzner-configuration-ssh-key-public config)
                      #:labels (hetzner-configuration-labels config))))
       (format #t "successfully created ssh key for '~a'\n" name)
       ssh-key)))
@@ -541,16 +466,6 @@ values: list of output lines returned by CMD and its exit code."
     (formatted-message (G_ "primary ip '~a' does not exist.")
                        name))))
 
-(define temporary-ssh-key-file
-  (let ((ssh-key-file (port-filename (mkstemp "/tmp/hetzner-key-XXXXXX")))
-        (ssh-key #f))
-    (lambda ()
-      "Return a dynamically created, temporary private SSH key."
-      (unless ssh-key
-        (set! ssh-key (make-keypair 'ed25519))
-        (private-key-to-file ssh-key ssh-key-file))
-      ssh-key-file)))
-
 (define (hetzner-machine-create-server machine)
   "Create the Hetzner server for MACHINE."
   (let* ((config (machine-configuration machine))
@@ -558,14 +473,13 @@ values: list of output lines returned by CMD and its exit code."
          (server-type (hetzner-configuration-server-type config)))
     (format #t "creating '~a' server for '~a'...\n" server-type name)
     (let* ((ssh-key (hetzner-machine-ssh-key machine))
-           (_ (assert ssh-key))         ;required during provisioning
            (ipv4 (hetzner-configuration-ipv4 config))
            (ipv6 (hetzner-configuration-ipv6 config))
            (api (hetzner-configuration-api config))
            (server (hetzner-api-server-create
                     api
                     (machine-display-name machine)
-                    #:ssh-keys (list ssh-key)
+                    (list ssh-key)
                     #:ipv4 (if (string? ipv4)
                                (hetzner-primary-ip-id (hetzner-resolve-ip api ipv4))
                                ipv4)
@@ -613,15 +527,13 @@ values: list of output lines returned by CMD and its exit code."
     (write-known-host! ssh-session)))
 
 (define (hetzner-machine-enable-rescue-system machine server)
-  "Enable the rescue system on the Hetzner SERVER for MACHINE, provisioning it
-with the configured SSH key, or a dynamically created temporary one."
+  "Enable the rescue system on the Hetzner SERVER for MACHINE."
   (let* ((name (machine-display-name machine))
          (config (machine-configuration machine))
          (api (hetzner-configuration-api config))
-         (ssh-keys (and=> (hetzner-machine-ssh-key machine) list)))
+         (ssh-keys (list (hetzner-machine-ssh-key machine))))
     (format #t "enabling rescue system on '~a'...\n" name)
-    (let ((action (hetzner-api-server-enable-rescue-system
-                   api server #:ssh-keys ssh-keys)))
+    (let ((action (hetzner-api-server-enable-rescue-system api server ssh-keys)))
       (format #t "successfully enabled rescue system on '~a'\n" name)
       action)))
 
@@ -657,7 +569,6 @@ with the configured SSH key, or a dynamically created temporary one."
 (set! hetzner-machine-ssh-run-script hetzner-machine-ssh-run-script)
 
 (define (hetzner-machine-rescue-install-os machine ssh-session server)
-  "Init a minimal Guix System to bootstrap from."
   (let ((name (machine-display-name machine))
         (os (hetzner-machine-bootstrap-os-form machine server)))
     (format #t "installing guix operating system on '~a'...\n" name)
@@ -676,9 +587,9 @@ chmod 600 /mnt/root/.ssh/authorized_keys
 
 # Small instance don't have much disk space.  Bind mount the store of the
 # rescue system to the tmp directory of the new Guix system.
-mkdir -p /mnt/tmp/gnu
-mkdir -p /gnu
-mount --bind /mnt/tmp/gnu /gnu
+mkdir -p /mnt/tmp/gnu/store
+mkdir -p /gnu/store
+mount --bind /mnt/tmp/gnu/store /gnu/store
 
 wget -O /tmp/guix-install.sh https://guix.gnu.org/guix-install.sh
 chmod +x /tmp/guix-install.sh
@@ -754,8 +665,7 @@ apt-get install cloud-initramfs-growroot uidmap --assume-yes"))
       action)))
 
 (define (hetzner-machine-provision machine)
-  "Provision a Guix System bootstrap server for MACHINE on the Hetzner Cloud
-service."
+  "Provision a server for MACHINE on the Hetzner Cloud service."
   (with-exception-handler
       (lambda (exception)
         (let ((config (machine-configuration machine))
@@ -770,10 +680,12 @@ service."
         (let ((ssh-session (hetzner-machine-wait-for-ssh machine server)))
           (hetzner-machine-rescue-install-packages machine ssh-session)
           (hetzner-machine-rescue-partition machine ssh-session)
-          (hetzner-machine-rescue-install-os machine ssh-session server))
-        (hetzner-machine-reboot machine server)
-        (hetzner-machine-authenticate-host machine server)
-        server))))
+          (hetzner-machine-rescue-install-os machine ssh-session server)
+          (hetzner-machine-reboot machine server)
+          (sleep 5)
+          (hetzner-machine-authenticate-host machine server)
+          server)))
+    #:unwind? #t))
 
 (define (machine-not-provisioned machine)
   (formatted-message
@@ -799,47 +711,16 @@ an environment type of 'hetzner-environment-type'."
 ;;; System deployment.
 ;;;
 
-(define (cleanup-temporary-ssh-key/maybe api ssh-key)
-  "Delete the temporary SSH private key file from the file system and the
-Hetzner API, if one was created used."
-  (when (%hetzner-ssh-key-file)
-    (format #t "cleaning up temporary ssh key~%")
-    (delete-file (%hetzner-ssh-key-file))
-    (%hetzner-ssh-key-file #f)
-    (hetzner-api-ssh-key-delete api ssh-key)))
-
 (define (deploy-hetzner machine)
   "Internal implementation of 'deploy-machine' for 'machine' instances with an
 environment type of 'hetzner-environment-type'."
   (hetzner-machine-validate machine)
+  (unless (hetzner-machine-ssh-key machine)
+    (hetzner-machine-ssh-key-create machine))
+  (let ((server (or (hetzner-machine-server machine)
+                    (hetzner-machine-provision machine))))
+    (deploy-machine (hetzner-machine-delegate machine server))))
 
-  (define server (hetzner-machine-server machine))
-  (define config (machine-configuration machine))
-  (define api (hetzner-configuration-api config))
-  (define ssh-key #f)                   ;hetzner API key
-
-  ;; Provisioning requires uploading an SSH key via the Hetzner API to
-  ;; authenticate non-interactively with the newly created server.
-  (unless server                        ;provisioning?
-    (unless (hetzner-configuration-ssh-public-key config)
-      (format #t "using a temporary ssh key for provisioning~%")
-      (%hetzner-ssh-key-file (temporary-ssh-key-file)))
-    (set! ssh-key (or (hetzner-machine-ssh-key machine)
-                      (hetzner-machine-ssh-key-create machine))))
-
-  ;; Cleaning-up here is a bit tricky, as `deploy-machine' returns a monadic
-  ;; value immediately, to be executed later; this means the clean-up must be
-  ;; delayed until monadic evaluation time.
-  (let* ((server (or server (hetzner-machine-provision machine)))
-         (delegate-machine (hetzner-machine-delegate machine server)))
-    ;; FIXME: The clean-up in the guard does not run even when
-    ;; `deploy-machine' fails.
-    (guard (c (#t (cleanup-temporary-ssh-key/maybe api ssh-key)
-                  (raise c)))
-      (mlet %store-monad
-          ((value (deploy-machine delegate-machine)))
-        (cleanup-temporary-ssh-key/maybe api ssh-key)
-        (return value)))))
 
 
 ;;;

gnu/machine/hetzner/http.scm

@@ -1,6 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2024 Roman Scherer <roman@burningswell.com>
-;;; Copyright © 2026 Maxim Cournoyer <maxim@guixotic.coop>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -20,7 +19,6 @@
 (define-module (gnu machine hetzner http)
   #:use-module (guix diagnostics)
   #:use-module (guix i18n)
-  #:use-module (guix memoization)
   #:use-module (guix records)
   #:use-module (ice-9 iconv)
   #:use-module (ice-9 match)
@@ -53,7 +51,6 @@
             hetzner-api-action-wait
             hetzner-api-actions
             hetzner-api-create-ssh-key
-            hetzner-api-images
             hetzner-api-locations
             hetzner-api-primary-ips
             hetzner-api-request-body
@@ -84,23 +81,6 @@
             hetzner-error-code
             hetzner-error-message
             hetzner-error?
-            hetzner-image?
-            hetzner-image-id
-            hetzner-image-type
-            hetzner-image-status
-            hetzner-image-name
-            hetzner-image-description
-            hetzner-image-disk-size
-            hetzner-image-created
-            hetzner-image-created-from
-            hetzner-image-bound-to
-            hetzner-image-os-flavor
-            hetzner-image-os-version
-            hetzner-image-rapid-deploy
-            hetzner-image-protection
-            hetzner-image-deprecated
-            hetzner-image-deleted
-            hetzner-image-architecture
             hetzner-ipv4-blocked?
             hetzner-ipv4-dns-ptr
             hetzner-ipv4-id
@@ -168,7 +148,6 @@
             hetzner-ssh-key?
             make-hetzner-action
             make-hetzner-error
-            make-hetzner-image
             make-hetzner-ipv4
             make-hetzner-ipv6
             make-hetzner-location
@@ -189,19 +168,7 @@
   (make-parameter (getenv "GUIX_HETZNER_API_TOKEN")))
 
 ;; Ideally this would be a Guix image. Maybe one day.
-(define %hetzner-default-server-image
-  (mlambda (api)
-    "Return the latest Debian image available.  This image gets used for the
-initial system provisioning phase, before Guix System takes over."
-    (let ((debian-images (filter (lambda (image)
-                                   (string=? "debian"
-                                             (hetzner-image-os-flavor image)))
-                                 (hetzner-api-images api))))
-      (hetzner-image-name
-       (last (sort debian-images
-                   (lambda (x y)
-                     (< (string->number (hetzner-image-os-version x))
-                        (string->number (hetzner-image-os-version y))))))))))
+(define %hetzner-default-server-image "debian-11")
 
 ;; Falkenstein, Germany
 (define %hetzner-default-server-location "fsn1")
@@ -323,43 +290,6 @@ initial system provisioning phase, before Guix System takes over."
   (server-type hetzner-server-type "server_type"
                json->hetzner-server-type)) ; <hetzner-server-type>
 
-(define-json-mapping <hetzner-image>
-  make-hetzner-image hetzner-image? json->hetzner-image
-  (id hetzner-image-id)                             ;integer
-  (type hetzner-image-type)                         ;string
-  (status hetzner-image-status)                     ;string
-  (name hetzner-image-name "name" (null-or identity)) ;string | null
-  (description hetzner-image-description)           ;string
-  (image-size hetzner-image-size "image_size"       ;number | null (GiB)
-              (null-or identity))
-  (disk-size hetzner-image-disk-size "disk_size")         ;number (GiB)
-  (created hetzner-image-created)                         ;string (date)
-  (created-from hetzner-image-created-from "created_from" ;object | null
-                (null-or json->hetzner-image-created-from))
-  (bound-to hetzner-image-bound-to "bound_to" (null-or identity)) ;integer | null
-  (os-flavor hetzner-image-os-flavor "os_flavor")               ;string
-  (os-version hetzner-image-os-version "os_version"             ;string | null
-              (null-or identity))
-  (rapid-deploy hetzner-image-rapid-deploy "rapid_deploy") ;boolean
-  (protection hetzner-image-protection "protection"        ;object
-              json->hetzner-image-protection)
-  (deprecated hetzner-image-deprecated)      ;string
-  (deleted hetzner-image-deleted "deleted" (null-or identity)) ;null | string
-  (architecture hetzner-image-architecture)) ;string
-
-(define (null-or parser)
-  (lambda (value)
-    (if (eq? 'null value)
-        *unspecified*
-	(parser value))))
-
-(define-json-type <hetzner-image-created-from>
-  (id)                                  ;integer
-  (name))                               ;string
-
-(define-json-type <hetzner-image-protection>
-  (delete))                             ;boolean
-
 (define-json-mapping <hetzner-server-type>
   make-hetzner-server-type hetzner-server-type? json->hetzner-server-type
   (architecture hetzner-server-type-architecture) ; string
@@ -668,11 +598,11 @@ initial system provisioning phase, before Guix System takes over."
   (apply hetzner-api-list api "/locations" "locations" json->hetzner-location options))
 
 (define* (hetzner-api-server-create
-          api name #:key
-          ssh-keys
+          api name ssh-keys
+          #:key
           (ipv4 #f)
           (ipv6 #f)
-          (image (%hetzner-default-server-image api))
+          (image %hetzner-default-server-image)
           (labels '())
           (location %hetzner-default-server-location)
           (server-type %hetzner-default-server-type)
@@ -690,11 +620,7 @@ initial system provisioning phase, before Guix System takes over."
                           ,@(if (integer? ipv6) `(("ipv6" . ,ipv6)) '())))
                         ("location" . ,location)
                         ("server_type" . ,server-type)
-                        ,@(if ssh-keys
-                              `(("ssh_keys" .
-                                 ,(apply vector (map hetzner-ssh-key-id
-                                                     ssh-keys))))
-                              '())
+                        ("ssh_keys" . ,(apply vector (map hetzner-ssh-key-id ssh-keys)))
                         ("start_after_create" . ,start-after-create?)))))
     (hetzner-api-action-wait api (hetzner-api-body-action body))
     (json->hetzner-server (assoc-ref body "server"))))
@@ -705,15 +631,12 @@ initial system provisioning phase, before Guix System takes over."
     (hetzner-api-action-wait api (hetzner-api-body-action body))))
 
 (define* (hetzner-api-server-enable-rescue-system
-          api server #:key ssh-keys (type "linux64"))
+          api server ssh-keys #:key (type "linux64"))
   "Enable the rescue system for SERVER with the Hetzner API."
-  (let* ((ssh-keys (and ssh-keys
-                        (apply vector (map hetzner-ssh-key-id ssh-keys))))
+  (let* ((ssh-keys (apply vector (map hetzner-ssh-key-id ssh-keys)))
          (body (hetzner-api-post
                 api (hetzner-server-path server "/actions/enable_rescue")
-                #:body `(,@(if ssh-keys
-                               `(("ssh_keys" . ,ssh-keys))
-                               '())
+                #:body `(("ssh_keys" . ,ssh-keys)
                          ("type" . ,type)))))
     (hetzner-api-action-wait api (hetzner-api-body-action body))))
 
@@ -764,8 +687,3 @@ initial system provisioning phase, before Guix System takes over."
   "Get server types from the Hetzner API."
   (apply hetzner-api-list api "/server_types" "server_types"
          json->hetzner-server-type options))
-
-(define* (hetzner-api-images api . options)
-  "Get image types from the Hetzner API."
-  (apply hetzner-api-list api "/images" "images"
-         json->hetzner-image options))

gnu/packages.scm

@@ -164,12 +164,6 @@ flags."
              %default-package-module-path
              channels-scm))))
 
-(define (strip-trailing-slash s)
-  ;; Strip the trailing slash of a string, if present.
-  (if (string-suffix? "/" s)
-      (string-drop-right s 1)
-      s))
-
 (define %patch-path
   ;; Define it after '%package-module-path' so that '%load-path' contains user
   ;; directories, allowing patches in $GUIX_PACKAGE_PATH to be found.
@@ -178,7 +172,7 @@ flags."
           (if (string=? directory %distro-root-directory)
               (string-append directory "/gnu/packages/patches")
               directory))
-        (map strip-trailing-slash %load-path))))
+        %load-path)))
 
 ;; This procedure is used by Emacs-Guix up to 0.5.1.1, so keep it for now.
 ;; See <https://github.com/alezost/guix.el/issues/30>.

gnu/packages/accessibility.scm

@@ -51,7 +51,6 @@
   #:use-module (gnu packages libusb)
   #:use-module (gnu packages java)
   #:use-module (gnu packages python)
-  #:use-module (gnu packages python-build)
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages tcl)
   #:use-module (gnu packages xml)
@@ -186,9 +185,7 @@ terminals.")
     (native-inputs
      (append
        (list clisp
-             ;; See: <https://bugzilla.redhat.com/show_bug.cgi?id=2231865>.
-             python-cython-0
-             python-setuptools  ;remove with next update
+             python-cython-0 ;; See https://bugzilla.redhat.com/show_bug.cgi?id=2231865
              doxygen
              gettext-minimal)
        ;; icedtea doesn't build reliably on all architectures.

gnu/packages/acl.scm

@@ -37,6 +37,7 @@
   #:use-module (gnu packages)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix utils))
 
 (define-public acl

gnu/packages/admin.scm

@@ -109,6 +109,7 @@
   #:use-module (guix build-system go)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system ruby)
@@ -743,7 +744,7 @@ manager.")
 (define-public swineherd
   (package
     (name "swineherd")
-    (version "0.0.5")
+    (version "0.0.4")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -752,7 +753,7 @@ manager.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1w3fvkdmqvbzqfx3xindm8qgam54wja46isgwasaiqmmhnla7p52"))))
+                "0iij1pl0y410k1dk1ifa56dxmjb1blv0y3k5rxy794gwg6w6c480"))))
     (build-system gnu-build-system)
     (arguments
      '(#:configure-flags '("--localstatedir=/var")
@@ -766,7 +767,7 @@ manager.")
            guile-netlink
            guile-3.0
            guix
-           shepherd-1.0))
+           shepherd-0.10))
     (home-page "https://github.com/BIMSBbioinfo/swineherd")
     (synopsis "System container manager")
     (description
@@ -1971,7 +1972,7 @@ maintenance releases.")
 (define-public dhcpcd
   (package
     (name "dhcpcd")
-    (version "10.3.2")
+    (version "10.3.0")
     (source
      (origin
        (method git-fetch)
@@ -1980,7 +1981,7 @@ maintenance releases.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1z5rpi0n2vwhkh3c4d0dxwp38fl18br58jpy7kzh97gzg3gpk5dl"))))
+        (base32 "058k8wbzbjb6mm6qklv40z1y4k6sdb4ysap1xk6pny1m1f9xkdax"))))
     (inputs (list bash-minimal coreutils-minimal eudev sed))
     (build-system gnu-build-system)
     (arguments
@@ -3405,7 +3406,7 @@ provides the following commands:
      ;; variable in the tests/import/cpan.scm test.
      (list (search-path-specification
             (variable "GUIX_PYTHONPATH")
-            (files (list "lib/python3.12/site-packages")))))
+            (files (list "lib/python3.11/site-packages")))))
     (home-page "https://www.ansible.com/")
     (synopsis "Radically simple IT automation")
     (description "Ansible aims to be a radically simple IT automation system.
@@ -3423,7 +3424,7 @@ modules and plugins that extend Ansible.")
 (define-public debops
   (package
     (name "debops")
-    (version "3.3.0")
+    (version "3.2.5")
     (source
      (origin
        (method git-fetch)
@@ -3432,7 +3433,7 @@ modules and plugins that extend Ansible.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0z6wck5kax5h2bjv1vw8pbd7fdcdhx87bj9fakh3h0rar9d2qksj"))
+        (base32 "15wfhha2b315i15l40j3sylyvs3mdrfw5awzq4cix51l5jppx8z5"))
        (patches
         (search-patches "debops-setup-py-avoid-git.patch"))))
     (build-system pyproject-build-system)
@@ -3454,8 +3455,8 @@ modules and plugins that extend Ansible.")
            python-future
            python-gitpython
            python-jinja2
-           python-pyxdg
            python-pyyaml
+           python-pyxdg
            python-toml))
     (arguments
      (list
@@ -3470,7 +3471,7 @@ modules and plugins that extend Ansible.")
                          `("PATH" ":" prefix
                            ,(map dirname
                                  (map (cut search-input-file inputs <>)
-                                      (list ;; "bin/ansible"    ;see above
+                                      (list "bin/ansible"
                                             "bin/gpg"
                                             "bin/git"
                                             "bin/git-crypt"
@@ -3926,18 +3927,6 @@ rules is done with the @code{auditctl} utility.")
                 (wrap-program (string-append ndiff "/bin/ndiff")
                   `("GUIX_PYTHONPATH" prefix
                     (,(python-path ndiff)))))))
-          (add-before 'check 'fix-tests-for-python-3.12
-            (lambda _
-              (substitute* "ndiff/ndifftest.py"
-                (("import imp")
-                 "import importlib.util")
-                (("ndiff = imp\\.load_source\\(\"ndiff\", \"ndiff\\.py\"\\)")
-                 (string-join
-                  '("spec = \
-importlib.util.spec_from_file_location(\"ndiff\", \"ndiff.py\")"
-                    "ndiff = importlib.util.module_from_spec(spec)"
-                    "spec.loader.exec_module(ndiff)")
-                  "\n")))))
           ;; These are the tests that do not require network access.
           (replace 'check
             (lambda* (#:key tests? #:allow-other-keys)
@@ -4067,59 +4056,51 @@ plug-in architecture to allow monitoring other system metrics.")
     (license license:gpl2+)))
 
 (define-public thefuck
-  ;; Latest release, 3.32, is not compatible with Python 3.12.
-  (let ((revision "0")
-        (commit "c7e7e1d884d3bb241ea6448f72a989434c2a35ec"))
-    (package
-      (name "thefuck")
-      (version (git-version "3.32" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-                (url "https://github.com/nvbn/thefuck")
-                (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "1l3i2cpdf3vznpbzqw7b18l23xikqs7andx6yzqvm5415snaqg06"))
-         (patches (search-patches "thefuck-test-environ.patch"))))
-      (build-system pyproject-build-system)
-      (arguments
-       (list
-        #:test-flags
-        #~(list
-           "--deselect=tests/test_utils.py::TestGetValidHistoryWithoutCurrent"
-           "--ignore=tests/functional/conftest.py")
-        #:phases
-        #~(modify-phases %standard-phases
-            (add-before 'check 'pre-check
-              (lambda _
-                ;; ModuleNotFoundError: No module named 'pytest_docker_pexpect'
-                (delete-file "tests/functional/conftest.py")
-                ;; Tests look for installed package
-                ;; Some tests need write access to $HOME.
-                (setenv "HOME" "/tmp")
-                ;; Even with that, this function tries to mkdir /.config.
-                (substitute* "tests/test_utils.py"
-                  (("settings\\.init\\(\\)") "")))))))
-      (native-inputs
-       (list go
-             python-mock
-             ;; Uses test markers that are incompatible with pytest 9.
-             python-pytest-8
-             python-pytest-mock
-             python-setuptools))
-      (inputs
-       (list python-colorama
-             python-decorator
-             python-psutil
-             python-pyte))
-      (home-page "https://github.com/nvbn/thefuck")
-      (synopsis "Correct mistyped console command")
-      (description
-       "The Fuck tries to match a rule for a previous, mistyped command, creates
+  (package
+    (name "thefuck")
+    (version "3.32")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/nvbn/thefuck")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "18ipa1bm6q1n5drbi8i65726hhqhl1g41390lfqrc11hkbvv443d"))
+       (patches (search-patches "thefuck-test-environ.patch"
+                                "thefuck-remove-broken-tests.patch"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'check 'pre-check
+            (lambda _
+              ;; Tests look for installed package
+              ;; Some tests need write access to $HOME.
+              (setenv "HOME" "/tmp")
+              ;; Even with that, this function tries to mkdir /.config.
+              (substitute* "tests/test_utils.py"
+                (("settings\\.init\\(\\)") "")))))))
+    (native-inputs
+     (list go
+           python-mock
+           python-pytest-8
+           python-pytest-mock
+           python-setuptools
+           python-wheel))
+    (inputs
+     (list python-colorama
+           python-decorator
+           python-psutil
+           python-pyte))
+    (home-page "https://github.com/nvbn/thefuck")
+    (synopsis "Correct mistyped console command")
+    (description
+     "The Fuck tries to match a rule for a previous, mistyped command, creates
 a new command using the matched rule, and runs it.")
-      (license license:x11))))
+    (license license:x11)))
 
 (define-public di
   (package
@@ -4730,7 +4711,7 @@ information tool.")
 (define-public fastfetch-minimal
   (package
     (name "fastfetch-minimal")
-    (version "2.63.1")
+    (version "2.60.0")
     (source
      (origin
        (method git-fetch)
@@ -4739,7 +4720,7 @@ information tool.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "13a5maf8jxyga5bga96s40binqp2i54pjlipsnqgfj85q01yzkg9"))
+        (base32 "089577qgxd63zqzd00fz381bfpmj6pwlmy2zfan9r6gbm1jvj4i8"))
        (modules '((guix build utils)))
        (snippet '(begin
                    (delete-file-recursively "src/3rdparty")

gnu/packages/aidc.scm

@@ -117,7 +117,7 @@ Features:
 (define-public python-zbarlight
   (package
     (name "python-zbarlight")
-    (version "4.0")
+    (version "3.0")
     (source
      (origin
        (method git-fetch)
@@ -126,7 +126,7 @@ Features:
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1q1nfc7g7bl9y63fwvnq1fcgqk79inc2hhw3ilvyw0nk0g74v8cm"))))
+        (base32 "1radfpfhfhkx3xnz01bqr5l9pl2zv70zis6l2kw1gwqbfw65r6w6"))))
     (build-system pyproject-build-system)
     (propagated-inputs (list python-pillow))
     (inputs (list zbar))

gnu/packages/algebra.scm

@@ -88,6 +88,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system pyproject)
+  #:use-module ((guix build-system python) #:select (pypi-uri))
   #:use-module (guix build-system r)
   #:use-module (guix download)
   #:use-module (guix gexp)

gnu/packages/android.scm

@@ -41,6 +41,7 @@
   #:use-module (guix build-system emacs)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system go)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system trivial)
@@ -1229,35 +1230,28 @@ main repository.")
 (define-public fdroidcl
   (package
     (name "fdroidcl")
-    (version "0.8.1")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/Hoverth/fdroidcl")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1bflahcsjarv4v6r61knl5gc5iydh1lwvqjgffhxr4pis4qfsqsa"))
-       ;; XXX: Reported upstream.
-       ;; See: <https://github.com/Hoverth/fdroidcl/pull/92>.
-       (patches (search-patches "fdroidcl-fix-tests.patch"))))
+    (version "0.7.0")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/mvdan/fdroidcl")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1s3fszlyyab9gbdrg52zcbafsb1mgb770skg7b3gj7f3pzfnra5n"))))
     (build-system go-build-system)
     (arguments
-     (list
-      #:install-source? #f
-      #:import-path "mvdan.cc/fdroidcl"))
-    (inputs
-     (list go-github-com-kr-pretty
-           go-github-com-pelletier-go-toml-v2
-           go-github-com-rogpeppe-go-internal
-           go-github-com-schollz-progressbar-v3))
-    (home-page "https://github.com/Hoverth/fdroidcl")
+     `(#:import-path "mvdan.cc/fdroidcl"
+       #:tests? #f                      ;requires internet access
+       #:install-source? #f))
+    (inputs (list go-github-com-kr-pretty go-github-com-schollz-progressbar-v3))
     (synopsis "F-Droid desktop client")
     (description
      "While the Android client integrates with the system with regular update
 checks and notifications, this is a simple command line client that talks to
 connected devices via ADB.")
+    (home-page "https://github.com/mvdan/fdroidcl")
     (license license:bsd-3)))
 
 (define-public emacs-fdroid

gnu/packages/apparmor.scm

@@ -180,7 +180,7 @@ supported by Canonical since 2009.")
        (list libapparmor))
       ;; Python module `readline' needed
       (native-inputs
-       (list bison flex gettext-minimal perl python python-setuptools which))
+       (list bison flex gettext-minimal perl python which))
       (license license:gpl2))))
 
 (define-public pam-apparmor

gnu/packages/astronomy.scm

@@ -37,6 +37,7 @@
 
 (define-module (gnu packages astronomy)
   #:use-module ((guix licenses) #:prefix license:)
+  #:use-module ((guix build-system python) #:select (pypi-uri)) ;to be removed soon
   #:use-module (guix build-system ant)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system copy)
@@ -1991,22 +1992,12 @@ model-fitting photometry or morphological analyses.")
        (sha256
         (base32 "156y3zp0nm77976rwsxjjdh7yvggas8s6m0nm523khvn4lq8f9n0"))))
     (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:test-flags
-      ;; Assertion errors:
-      ;;
-      ;; You are lazy loading attributes via 'bibtex', and so are making
-      ;; multiple calls to the API. This will impact your overall rate
-      ;; limits. bibtex should be queried with ads.ExportQuery(); You will hit
-      ;; API ratelimits very quickly otherwise.
-      #~(list (string-append "--deselect=ads/tests/test_search.py"
-                             "::TestArticle::test_get_field_bibtex"))))
     (native-inputs
      (list nss-certs-for-test
            python-httpretty
            python-pytest
-           python-setuptools))
+           python-setuptools
+           python-wheel))
     (propagated-inputs
      (list python-mock
            python-requests
@@ -2186,6 +2177,20 @@ interchange format for scientific data.  This package contains the Python
 implementation of the ASDF Standard.")
     (license license:bsd-3)))
 
+(define-public python-asdf-3
+  (package
+    (inherit python-asdf)
+    (version "3.5.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "asdf" version))
+       (sha256
+        (base32 "0scnw5y4x5k3vyfylq0w612b662xlccx3gsscaw082zlv2yxfyh4"))))
+    (propagated-inputs
+     (modify-inputs propagated-inputs
+       (prepend python-asdf-transform-schemas)))))
+
 (define-public python-asdf-astropy
   (package
     (name "python-asdf-astropy")
@@ -3862,6 +3867,10 @@ find,download, and read the data files.")
       #~(list "-m" "not remote_data")
       #:phases
       #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-pytest-config
+            (lambda _
+              (substitute* "pyproject.toml"
+                ((" --cov=cdflib --cov-report=xml") ""))))
           (add-before 'check 'set-HOME
             (lambda _
               (setenv "HOME" "/tmp"))))))
@@ -4663,6 +4672,7 @@ Cesium.")
     (native-inputs
      (list python-pydot
            python-pytest
+           python-pytest-cov
            python-pytest-asdf-plugin
            python-pytest-doctestplus
            python-pytest-filter-subpackage
@@ -5187,6 +5197,7 @@ files.")
     (build-system pyproject-build-system)
     (native-inputs
      (list python-pytest
+           python-pytest-cov
            python-setuptools
            python-setuptools-scm
            python-wheel))
@@ -5781,6 +5792,7 @@ across many files.")
      (list python-mock
            python-objgraph
            python-pytest
+           python-pytest-cov
            ;; python-pytest-faulthandler
            python-setuptools
            python-wheel
@@ -6627,6 +6639,19 @@ files.")
                  (string-append
                   "from astropy.units.core import Unit, UnitBase\n"
                   "from astropy.units.errors import UnitTypeError\n")))))
+          (add-after 'unpack 'relax-requirements
+            (lambda _
+              (substitute* "pyproject.toml"
+                ;; RuntimeError: Unable to detect version control
+                ;; system. Checked: Git. Not installed: Mercurial, Darcs,
+                ;; Subversion, Bazaar, Fossil, Pijul.  See
+                ;; <https://github.com/blacklanternsecurity/bbot/issues/1257>.
+                (("enable = true") "enable = false"))))
+          (add-before 'build 'set-version
+            (lambda _
+              ;; TODO: Include in pyproject-build-system.
+              (setenv "POETRY_DYNAMIC_VERSIONING_BYPASS"
+                      #$(version-major+minor+point version))))
           (add-before 'check 'prepare-test-environment
             (lambda _
               (setenv "HOME" "/tmp"))))))
@@ -6684,7 +6709,7 @@ astronomical tables
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; tests: 1508 passed, 43621 warnings
+      ;; tests: 1509 passed, 55331 warnings
       #:test-flags
       #~(list "--numprocesses" (number->string (min 8 (parallel-job-count)))
               ;; TypeError: SparseSolverBase.__init__() got an unexpected
@@ -6701,12 +6726,7 @@ astronomical tables
               (string-append "--deselect=test/test_Sampling/test_Likelihoods/"
                              "test_position_likelihood.py"
                              "::TestPositionLikelihood"
-                             "::test_multiplane_position_likelihood")
-              ;; XXX: AttributeError: 'FileFinder' object has no attribute
-              ;; 'find_module'.
-              ;; See: <https://github.com/lenstronomy/lenstronomy/issues/845>.
-              (string-append "--deselect=test/test_Util/test_package_util.py"
-                             "::test_short_and_laconic"))
+                             "::test_multiplane_position_likelihood"))
       #:phases
       #~(modify-phases %standard-phases
           (add-before 'check 'pre-check
@@ -11663,6 +11683,7 @@ for dealing with particle data and a few related utility functions.")
     (build-system pyproject-build-system)
     (propagated-inputs (list python-numpy python-scipy))
     (native-inputs (list python-pytest
+                         python-pytest-cov
                          python-pytest-doctestplus
                          python-setuptools-scm
                          python-wheel))

gnu/packages/audio.scm

@@ -51,7 +51,7 @@
 ;;; Copyright © 2024 Nikita Domnitskii <nikita@domnitskii.me>
 ;;; Copyright © 2024 Roman Scherer <roman@burningswell.com>
 ;;; Copyright © 2024 Sughosha <sughosha@disroot.org>
-;;; Copyright © 2025, 2026 Junker <dk@junkeria.club>
+;;; Copyright © 2025 Junker <dk@junkeria.club>
 ;;; Copyright © 2025 Sughosha <sughosha@disroot.org>
 ;;; Copyright © 2025 Andrew Wong <wongandj@icloud.com>
 ;;; Copyright © 2025 Kjartan Oli Agustsson <kjartanoli@outlook.com>
@@ -63,7 +63,6 @@
 ;;; Copyright © 2026 Noé Lopez <noelopez@free.fr>
 ;;; Copyright © 2026 Carlos Durán Domínguez <wurt@wurt.eu>
 ;;; Copyright © 2026 Daniel Martins <email@danielfm.me>
-;;; Copyright © 2026 Artyom V. Poptsov <poptsov.artyom@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -128,7 +127,6 @@
   #:use-module (gnu packages linphone)
   #:use-module (gnu packages linux)
   #:use-module (gnu packages llvm)
-  #:use-module (gnu packages logging)
   #:use-module (gnu packages machine-learning)
   #:use-module (gnu packages man)
   #:use-module (gnu packages maths)
@@ -146,7 +144,6 @@
   #:use-module (gnu packages pretty-print)
   #:use-module (gnu packages python)
   #:use-module (gnu packages python-build)
-  #:use-module (gnu packages python-check)
   #:use-module (gnu packages python-crypto)
   #:use-module (gnu packages python-science)
   #:use-module (gnu packages python-web)
@@ -182,6 +179,7 @@
   #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system trivial)
@@ -196,45 +194,6 @@
   #:use-module (srfi srfi-26)
   #:use-module (ice-9 match))
 
-(define-public adplug
-  (package
-    (name "adplug")
-    (version "2.4")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/adplug/adplug")
-                    (commit (string-append "adplug-" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "0l31ya42g3q7ry2m0y5djgjb9ax8ciy8jn86252vdjkjswwqgscd"))))
-    (build-system cmake-build-system)
-    (arguments
-     (list #:configure-flags
-           #~(list "-DBUILD_SHARED_LIBS=ON")
-           #:modules
-           '((guix build cmake-build-system)
-             (guix build utils)
-             (srfi srfi-26))                 ;for cute
-           #:phases
-           #~(modify-phases %standard-phases
-               (add-after 'install 'install-headers
-                 (lambda _
-                   (for-each (cute install-file <>
-                                  (string-append #$output "/include/adplug"))
-                             (find-files "../source/src" "\\.h$")))))))
-    (propagated-inputs
-     (list libbinio))
-    (home-page "https://adplug.github.io/")
-    (synopsis "AdLib sound player library")
-    (description
-     "AdPlug is a hardware independent AdLib sound player library, mainly
-written in C++.  AdPlug plays sound data, originally created for the AdLib
-(OPL2/3) audio board, on top of an OPL2/3 emulator or by using the real
-hardware.  No OPL2/3 chips are required for playback.")
-    (license license:lgpl2.1+)))
-
 (define-public opensles
   (package
     (name "opensles")
@@ -821,8 +780,7 @@ Filter) modules follow the convention of 1V / Octave.")
                    "https://aubio.org/pub/aubio-" version ".tar.bz2"))
              (sha256
               (base32
-               "1npks71ljc48w6858l9bq30kaf5nph8z0v61jkfb70xb9np850nl"))
-             (patches (search-patches "aubio-waflib-python312-compat.patch"))))
+               "1npks71ljc48w6858l9bq30kaf5nph8z0v61jkfb70xb9np850nl"))))
     (build-system waf-build-system)
     (arguments
      (list
@@ -3280,27 +3238,30 @@ synchronous execution of all clients, and low latency operation.")
   (package
     (inherit jack-1)
     (name "jack2")
-    ;; 1.9.22 does not compile with Python 3.12, use the latest commit instead.
-    (properties '((commit . "17959465a722225a36a8b612aed26764036f258e")
-                  (revision . "0")))
-    (version (git-version "1.9.22"
-                          (assoc-ref properties 'revision)
-                          (assoc-ref properties 'commit)))
+    (version "1.9.21")
     (source (origin
               (method git-fetch)
               (uri (git-reference
-                     (url "https://github.com/jackaudio/jack2")
-                     (commit (assoc-ref properties 'commit))))
+                    (url "https://github.com/jackaudio/jack2")
+                    (commit (string-append "v" version))))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "18dbjq9y8mcp27j9aaqdlg4976hrisr7b88lk84ck09gmzlwqalp"))))
+                "0sbrffmdbajvrk7iqvsvrnwnpvmicvbjyq3f52r6ashdsznsz03b"))))
     (build-system waf-build-system)
     (arguments
      `(#:tests? #f                      ; no check target
        #:configure-flags '("--dbus" "--alsa")
        #:phases
        (modify-phases %standard-phases
+         ;; Python 3.11 has removed the 'U' (universal newline) mode.  It has
+         ;; been the default since Python 3.3.
+         (add-after 'unpack 'python-compatibility
+           (lambda _
+             (substitute* '("waflib/Context.py"
+                            "waflib/ConfigSet.py")
+               (("m='rU'") "m='r'")
+               (("read\\('rU'") "read('r'"))))
          (add-before 'configure 'set-linkflags
            (lambda _
              ;; Ensure -lstdc++ is the tail of LDFLAGS or the simdtests.cpp
@@ -3326,7 +3287,7 @@ synchronous execution of all clients, and low latency operation.")
            expat
            libsamplerate
            opus
-           python-dbus
+           python-dbus-1.2
            readline))
     (native-inputs
      (list pkg-config))
@@ -3469,7 +3430,7 @@ from being able to mix multiple JACK audio streams.")
 (define-public pipemixer
   (package
     (name "pipemixer")
-    (version "0.5.0")
+    (version "0.4.1")
     (source
      (origin
       (method git-fetch)
@@ -3478,8 +3439,19 @@ from being able to mix multiple JACK audio streams.")
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
-       (base32 "104h2zdhqx5gdddnb7v7rhrflznh4v7d4g3s6vk2mxwf938zgm72"))))
+       (base32 "0fvnvr74q5khxlj5sylfnkblydmwgdbvj04mhdqw0zzmfqwignhd"))))
     (build-system meson-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-pw-device
+            (lambda _
+              (substitute* "src/pw/device.c"
+                ;; TODO: Report upstream:
+                ;; ../source/src/pw/device.c:328:80: error: expected
+                ;; ‘;’ before ‘{’ token
+                (("iter\\) \\{") "iter); {")))))))
     (native-inputs
      (list pkg-config))
     (inputs
@@ -3879,58 +3851,6 @@ provided by Pipewire.")
 cross-platform audio input/output stream library.")
     (license license:expat)))
 
-(define-public python-pyroomacoustics
-  (package
-    (name "python-pyroomacoustics")
-    (version "0.10.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/LCAV/pyroomacoustics")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0546506lg93nrybvilc4wgrgvn317w9zxv2jwikhpfy1i0qyrnkk"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:test-flags
-      #~(list
-         ;; Want to download data from the internet:
-         "--ignore"
-         "pyroomacoustics/directivities/tests/test_sofa_directivities.py"
-         "--ignore"
-         "pyroomacoustics/datasets/tests/test_download_uncompress.py"
-         ;; May fail because of slight numerical imprecision.
-         "--ignore"
-         "pyroomacoustics/experimental/tests/test_measure_rt60.py")
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'build 'set-extra-include-paths
-            (lambda* (#:key inputs #:allow-other-keys)
-              (setenv "CPLUS_INCLUDE_PATH"
-                      (string-append
-                       (search-input-directory inputs "include/eigen3")
-                       ":"
-                       (or (getenv "CPLUS_INCLUDE_PATH") ""))))))))
-    (propagated-inputs (list python-scipy))
-    (native-inputs (list eigen
-                         pybind11
-                         python-cython
-                         python-matplotlib
-                         python-numpy
-                         python-pytest
-                         python-setuptools
-                         python-sofa))
-    (inputs (list nanoflann))
-    (home-page "https://github.com/LCAV/pyroomacoustics")
-    (synopsis "Python library for room acoustics")
-    (description "@code{pyroomacoustics} is a framework for simulating the
-acustic behaviour of rooms, such as computing the impulse response using
-different simulation methods.")
-    (license license:expat)))
-
 (define-public python-pulsectl
   (package
     (name "python-pulsectl")
@@ -4035,40 +3955,6 @@ to send and receive OSC messages using a nice and simple Python API.  Also
 included are the command line utilities @code{send_osc} and @code{dump_osc}.")
     (license license:lgpl2.1+)))
 
-(define-public python-sofa
-  (package
-    (name "python-sofa")
-    (version "0.2.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/spatialaudio/python-sofa/")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0n6mdck2dawfm6napqhhxi8gjyvs6121pblcr7zjl37a8ldqvg29"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:tests? #f ;No tests
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'remove-wrong-dependency
-            (lambda _
-              (substitute* "setup.py"
-                (("'datetime'")
-                 "")))))))
-    (propagated-inputs (list python-netcdf4 python-numpy python-scipy))
-    (native-inputs (list python-setuptools))
-    (home-page "https://github.com/spatialaudio/python-sofa/")
-    (synopsis
-     "Python @acronym{Spatially Oriented Format for Acoustics, SOFA} API")
-    (description
-     "Python API for @acronym{Spatially Oriented Format for Acoustics, SOFA} files
-as specified in @url{https://www.sofaconventions.org, SOFA conventions}.")
-    (license license:expat)))
-
 (define-public python-soundfile
   (package
     (name "python-soundfile")
@@ -4204,7 +4090,9 @@ one-dimensional sample-rate conversion library.")
                  (string-append "'" #$(this-package-input "libsndfile")
                                 "/lib/libsndfile"))))))))
     (native-inputs
-     (list python-pytest python-setuptools))
+     (list python-pytest
+           python-pytest-cov
+           python-setuptools))
     (inputs
      (list libsndfile
            portaudio))
@@ -4577,33 +4465,6 @@ This includes device enumeration and initialization, file loading, and
 streaming.")
     (license license:expat)))
 
-(define-public wp-notifyd
-  (package
-    (name "wp-notifyd")
-    (version "1.1.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/LDAP/wp-notifyd")
-              (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1nkndz0li15maf0dc9x631p0dr8085wzz5358552wljv7chywrza"))))
-    (build-system meson-build-system)
-    (arguments
-     (list #:tests? #f)) ;there are no tests
-    (inputs (list libnotify
-                  wireplumber-minimal
-                  pipewire
-                  spdlog))
-    (native-inputs (list pkg-config))
-    (home-page "https://github.com/LDAP/wp-notifyd")
-    (synopsis "Notification daemon for Wireplumber")
-    (description "@command{wp-notifyd} is a lightweight notification daemon for
-@dfn{WirePlumber} (the session and policy manager for PipeWire).")
-    (license license:expat)))
-
 (define-public pa-notify
   (package
     (name "pa-notify")
@@ -5008,42 +4869,6 @@ using Guix System.")
     ;; GNU Library (not Lesser) General Public License.
     (license license:lgpl2.0+)))
 
-(define-public hiir
-  (let ((commit "4a9a1e67fa6f8ce7688e1c0c8a2b017cecd206a3")
-        (revision "0"))
-    (package
-      (name "hiir")
-      (version (git-version "0" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-               (url "https://github.com/LostRobotMusic/hiir")
-               (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "1wzlg0di768mzcik6fij4pd6dnpmbw8q236h478c057d10qfp44g"))))
-      (build-system copy-build-system)
-      (arguments
-       (list
-        #:install-plan
-        #~`(("." "/include/hiir"))))
-      (home-page "https://github.com/LostRobotMusic/hiir")
-      (synopsis "Header-only version of Laurent de Soras's HIIR 1.40 library")
-      (description
-       "This package provides a header-only version of the
-@uref{http://ldesoras.free.fr/prod.html#src_hiir, HIIR library by Laurent De
-Soras}, updated to version 1.40.  HIIR is a C++ library for changing the
-sampling rate of a signal by a factor two, in both directions (upsampling and
-downsampling), obtaining two signals with a π/2 phase difference (Hilbert
-transform).  It is made of a two-path polyphase IIR filter, implemented with
-FPU, 3DNow!, SSE, SSE2, AVX, AVX-512 and NEON instruction sets.
-
-This package contains the same as the original library, except with the
-contents of one source file moved into a header file (and set as inline) to
-make the library header-only, and with the test folder removed.")
-      (license license:wtfpl2))))
-
 (define-public redumper
   (package
     (name "redumper")
@@ -7204,6 +7029,32 @@ developing fully accurate DirectX Audio runtime libraries.")
            license:expat
            license:public-domain))))
 
+(define-public gnaural
+  (package
+    (name "gnaural")
+    (version "20110606")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "mirror://sourceforge/gnaural/Gnaural/gnaural_"
+                           version ".tar.xz"))
+       (sha256
+        (base32
+         "1gq519c0imsh57zklyi0f8h64l3ai48lh672c834470z8c6kvbfi"))))
+    (build-system gnu-build-system)
+    (inputs
+     (list alsa-lib gtk+-2 libsndfile portaudio))
+    (native-inputs
+     (list pkg-config))
+    (home-page "https://gnaural.sourceforge.net/")
+    (synopsis "Binaural beat synthesizer")
+    (description "Gnaural is a programmable auditory binaural beat synthesizer
+intended to be used for brainwave entrainment.  Gnaural supports creation of
+binaural beat tracks of different frequencies and exporting of tracks into
+different audio formats.  Gnaural can also be linked over the internet with
+other Gnaural instances, allowing synchronous sessions between many users.")
+    (license license:gpl2+)))
+
 (define-public darkice
   (package
     (name "darkice")
@@ -7414,7 +7265,6 @@ as is the case with audio plugins.")
                                        (find-files "bin")))))))))
     (inputs
      (list alsa-lib
-           bash-minimal
            ffmpeg
            fluidsynth
            file
@@ -7472,8 +7322,8 @@ default and preferred audio driver but also supports native drivers like ALSA.")
 
 ;;; This package variant tracks the latest in-development 2.6 release.
 (define-public carla-2.6
-  (let ((commit "294a80145e39c0755ab9073d90fd8b9524fbfc84")
-        (revision "1"))
+  (let ((commit "aa400535b31c67f4b6c1b28e6e20e4d4f82111a3")
+        (revision "0"))
     (package
       (inherit carla)
       (name "carla")
@@ -7487,12 +7337,7 @@ default and preferred audio driver but also supports native drivers like ALSA.")
            (commit commit)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "053yfwf9l9vqvq95c354by6nm8ym0wgkv3fr1434x5w9n1344z0z"))))
-      (inputs
-       (modify-inputs (package-inputs carla)
-         (replace "python-pyqt" python-pyqt-6)
-         (replace "qtbase" qtbase)
-         (replace "qtwayland" qtwayland))))))
+          (base32 "0cnj2sgr60f5h6wdfmihc214wf3n74686sipl3iyzmylqrcyhbjn")))))))
 
 ;; This source is a fork of vst3sdk with the documentation and VSTGUI
 ;; submodules removed and a dummy `meson.build` file that just lists all
@@ -7982,59 +7827,60 @@ Rate} 3600x2250 bit/s vocoder used in various radio systems.")
                   (delete-file-recursively "third_party")
                   (delete-file-recursively "modules")))))
     (build-system cmake-build-system)
-    (arguments
-     (list
-      #:configure-flags
-      #~(list "-DLINK_BUILD_QT_EXAMPLES=ON"
-              "-DLINK_BUILD_JACK=ON")
-      #:phases
-      #~(modify-phases %standard-phases
-          (replace 'check
-            (lambda* (#:key inputs tests? #:allow-other-keys)
-              (when tests?
-                (let* ((python (search-input-file inputs "/bin/python3"))
-                       (run-tests "../source/ci/run-tests.py"))
-                  (invoke python run-tests "--target" "LinkCoreTest")
-                  (invoke python run-tests "--target" "LinkDiscoveryTest")))))
-          (add-before 'install 'patch-cmake
-            (lambda* (#:key inputs #:allow-other-keys)
-              (let* ((source "../source/"))
-                (substitute* (string-append source
-                                            "cmake_include/AsioStandaloneConfig.cmake")
-                  (((string-append "\\$\\{CMAKE_CURRENT_LIST_DIR\\}/\\.\\./"
-                                   "modules/asio-standalone/asio/include"))
-                   (dirname (search-input-file inputs "include/asio.hpp"))))
-                (substitute* (string-append source "AbletonLinkConfig.cmake")
-                  (("\\$\\{CMAKE_CURRENT_LIST_DIR\\}/include")
-                   "${CMAKE_CURRENT_LIST_DIR}/../../../include")
-                  (("\\$\\{CMAKE_CURRENT_LIST_DIR\\}/include/ableton/Link\\.hpp")
-                   "${CMAKE_CURRENT_LIST_DIR}/../../../include/ableton/Link.hpp")))))
-          (replace 'install
-            (lambda _
-              (let* ((out #$output)
-                     (lib-cmake (string-append out "/lib/cmake/ableton-link"))
-                     (source "../source"))
-                (for-each delete-file
-                          '("bin/LinkDiscoveryTest" "bin/LinkCoreTest"))
-                (copy-recursively "bin" (string-append out "/bin"))
-                (copy-recursively (string-append source "/include/ableton")
-                                  (string-append out "/include/ableton"))
-                (install-file (string-append source "/AbletonLinkConfig.cmake")
-                              lib-cmake)
-                (install-file (string-append source
-                                             "/cmake_include/AsioStandaloneConfig.cmake")
-                              (string-append lib-cmake "/cmake_include"))))))))
     (native-inputs
      (list catch-framework
-           portaudio                    ;for portaudio examples
-           python                       ;for running tests
-           python-setuptools))          ;for running tests
+           python ;for running tests
+           portaudio)) ;for portaudio examples
     (inputs
      (list jack-1)) ;for JACK examples
     (propagated-inputs
      ;; This is because include/ableton/platforms/asio/AsioWrapper.hpp
      ;; contains '#include <asio.hpp>'.
      (list asio-1.28))
+    (arguments
+     `(#:configure-flags
+       '("-DLINK_BUILD_QT_EXAMPLES=ON"
+         "-DLINK_BUILD_JACK=ON")
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'check
+           (lambda* (#:key inputs tests? #:allow-other-keys)
+             (when tests?
+               (let* ((python (search-input-file inputs "/bin/python3"))
+                      (run-tests "../source/ci/run-tests.py"))
+                 (invoke python run-tests "--target" "LinkCoreTest")
+                 (invoke python run-tests "--target" "LinkDiscoveryTest")))))
+         (add-before 'install 'patch-cmake
+           (lambda* (#:key inputs #:allow-other-keys)
+             (let* ((source "../source/"))
+               (substitute* (string-append source
+                                           "cmake_include/AsioStandaloneConfig.cmake")
+                 (((string-append "\\$\\{CMAKE_CURRENT_LIST_DIR\\}/\\.\\./"
+                                  "modules/asio-standalone/asio/include"))
+                  (string-append (assoc-ref inputs "asio")
+                                 "/include")))
+               (substitute* (string-append source "AbletonLinkConfig.cmake")
+                 (("\\$\\{CMAKE_CURRENT_LIST_DIR\\}/include")
+                  "${CMAKE_CURRENT_LIST_DIR}/../../../include")
+                 (("\\$\\{CMAKE_CURRENT_LIST_DIR\\}/include/ableton/Link\\.hpp")
+                  "${CMAKE_CURRENT_LIST_DIR}/../../../include/ableton/Link.hpp")))))
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (bin (string-append out "/bin"))
+                    (lib-cmake (string-append out "/lib/cmake/ableton-link"))
+                    (source "../source"))
+               (for-each (lambda (test-file)
+                           (delete-file test-file))
+                         '("bin/LinkDiscoveryTest" "bin/LinkCoreTest"))
+               (copy-recursively "bin" bin)
+               (copy-recursively (string-append source "/include/ableton")
+                                 (string-append out "/include/ableton"))
+               (install-file (string-append source "/AbletonLinkConfig.cmake")
+                             lib-cmake)
+               (install-file (string-append source
+                                            "/cmake_include/AsioStandaloneConfig.cmake")
+                             (string-append lib-cmake "/cmake_include"))))))))
     (home-page "https://github.com/Ableton/link")
     (synopsis "Synchronize musical beat, tempo, and phase across multiple applications")
     (description
@@ -8132,16 +7978,7 @@ Icecast server.")
            (lambda _
              (substitute* "misc.c"
                (("#include <stdio.h>\n" all)
-                (string-append all "#include <string.h>\n")))
-             (substitute* "wavsubs.c"
-               (("#include \"wavsubs.h\"\n" all)
-                (string-append all "#include <stdlib.h>")))
-             (substitute* "wavfile.c"
-               (("#include \"wavsubs.h\"\n" all)
-                (string-append all "#include <stdlib.h>")))
-             (substitute* "generator.c"
-               (("#include \"wavsubs.h\"\n" all)
-                (string-append all "#include <stdlib.h>")))))
+                (string-append all "#include <string.h>\n")))))
          (delete 'configure)
          (replace 'install
            (lambda* (#:key make-flags outputs #:allow-other-keys)
@@ -8153,8 +7990,7 @@ Icecast server.")
     (inputs
      (list ncurses))
     (native-inputs
-     `(("gcc" ,gcc-9)
-       ("groff" ,groff-minimal)         ; for nroff
+     `(("groff" ,groff-minimal)         ; for nroff
        ("util-linux" ,util-linux)))     ; for col
     (home-page "https://github.com/bleskodev/siggen")
     (synopsis "Signal generation tools")
@@ -8230,7 +8066,7 @@ as sample rate, determining whether an audio file is silent, and much more.")
     (propagated-inputs
      (list python-numba python-numpy python-scipy python-six))
     (native-inputs
-     (list python-pytest python-setuptools python-wheel))
+     (list python-pytest python-pytest-cov python-setuptools python-wheel))
     (home-page "https://github.com/bmcfee/resampy")
     (synopsis "Efficient signal resampling")
     (description
@@ -8248,10 +8084,10 @@ Home Page}.")
      (origin
        (method git-fetch)
        (uri (git-reference
-              (url "https://github.com/librosa/librosa/")
-              (commit version)
-              ;; TODO: Package test data.
-              (recursive? #true)))
+             (url "https://github.com/librosa/librosa/")
+             (commit version)
+             ;; For test files.
+             (recursive? #true)))
        (file-name (git-file-name name version))
        (sha256
         (base32 "065x43hx670rjrclxi4hiqxscllb16v9s7myjvg7rd5pd3y0k7sg"))))
@@ -8259,13 +8095,15 @@ Home Page}.")
     (arguments
      (list
       #:test-flags
-      #~(list "-k" (string-append
-                    ;; Resampling tests require python-samplerate.
-                    "not resample"
-                    ;; These tests use Pooch and download data files.
-                    " and not example and not test_cite"
-                    ;; XXX assert 22050 == 31744
-                    " and not test_stream"))))
+      ;; Ignore --mpl flag.
+      '(list "-c" "/dev/null"
+             "-k" (string-append
+                   ;; Resampling tests require python-samplerate.
+                   "not resample"
+                   ;; These tests use Pooch and download data files.
+                   " and not example and not test_cite"
+                   ;; XXX assert 22050 == 31744
+                   " and not test_stream"))))
     (propagated-inputs
      (list python-audioread
            python-decorator
@@ -8284,9 +8122,10 @@ Home Page}.")
      (list python-matplotlib
            python-packaging
            python-pytest
-           python-pytest-mpl
+           python-pytest-cov
            python-resampy
-           python-setuptools))
+           python-setuptools
+           python-wheel))
     (home-page "https://librosa.org")
     (synopsis "Python module for audio and music processing")
     (description

gnu/packages/aux-files/linux-libre/6.12-riscv.conf

@@ -1989,7 +1989,7 @@ CONFIG_SCSI_LOWLEVEL=y
 # CONFIG_SCSI_DEBUG is not set
 # CONFIG_SCSI_PMCRAID is not set
 # CONFIG_SCSI_PM8001 is not set
-CONFIG_SCSI_VIRTIO=m
+# CONFIG_SCSI_VIRTIO is not set
 # CONFIG_SCSI_DH is not set
 # end of SCSI device support
 

gnu/packages/aux-files/python/pytest_guix.py

@@ -1,58 +0,0 @@
-# GNU Guix --- Functional package management for GNU
-# Copyright © 2025 Nicolas Graves <ngraves@ngraves.fr>
-#
-# This file is part of GNU Guix.
-#
-# GNU Guix is free software; you can redistribute it and/or modify it
-# under the terms of the GNU General Public License as published by
-# the Free Software Foundation; either version 3 of the License, or (at
-# your option) any later version.
-#
-# GNU Guix is distributed in the hope that it will be useful, but
-# WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
-
-import importlib.util
-import json
-
-
-def pytest_addoption(parser):
-    """Add stub options to be ignored by pytest.
-
-    More precisely, inject all options provided in .pytest_guix_options.json,
-    except options whose plugin is indeed installed.
-
-    For example, if the json file records --cov:
-      if the pytest_cov module is installed, its --cov will be used.
-      otherwise, --cov is ignored (read by this parser, but nothing is done
-      with it).
-
-    Flags can be given with additional keyword arguments in a json object.
-    If the json object is not given, fallback to the default
-    {"action": "append", "nargs": "?"}.  In practice, these arguments are only
-    mandatory for the store_true and store_const actions to avoid eating other
-    arguments.
-
-    This allows to remove development packages, which are not required at build
-    time while at the same time avoiding the need to adjust test options in
-    pyproject.toml or other configuration files.
-    """
-    with open(".pytest_guix_options.json", "r") as options_file:
-        plugin_options = json.load(options_file)
-        group = parser.getgroup(
-            "guix", "Options ignored by the Guix pyproject-build-system"
-        )
-
-        # Only add options for plugins that are not present.
-        for key, options in plugin_options.items():
-            if importlib.util.find_spec(f"pytest_{key}") is None:
-                # Plugin not found, add stub options
-                for option, kwargs in options.items():
-                    if kwargs:
-                        group.addoption(option, **kwargs)
-                    else:
-                        group.addoption(option, action="append", nargs="?")

gnu/packages/backup.scm

@@ -50,6 +50,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system go)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix download)
   #:use-module (guix gexp)
@@ -106,7 +107,6 @@
   #:use-module (gnu packages rsync)
   #:use-module (gnu packages ruby-xyz)
   #:use-module (gnu packages serialization)
-  #:use-module (gnu packages sphinx)
   #:use-module (gnu packages ssh)
   #:use-module (gnu packages time)
   #:use-module (gnu packages tls)
@@ -137,6 +137,7 @@
            python-paramiko
            python-pexpect
            python-pytest
+           python-pytest-runner
            python-setuptools-scm
            tzdata-for-tests
            python-mock))
@@ -631,26 +632,41 @@ rsnapshot uses hard links to deduplicate identical files.")
 (define-public borg
   (package
     (name "borg")
-    (version "1.4.4")
+    (version "1.4.3")
     (source
      (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/borgbackup/borg")
-              (commit version)))
-       (file-name (git-file-name name version))
+       (method url-fetch)
+       (uri (pypi-uri "borgbackup" version))
        (sha256
-        (base32 "0bk302lbjjz1y8dg78wqqys80bm7mzkj5yf6wgyqdwvbqpsnpim4"))))
+        (base32 "07s4jqcv03s98hi6lvqpvmnnhl532qnvv11mjy2xc08rbmsgmfvr"))
+       (snippet
+        #~(begin
+            ;; Delete files generated by Cython.  We used to have a regex that
+            ;; created the list of generated files but Borg has added new
+            ;; non-generated C files that cause the regex to generate the
+            ;; wrong list.
+            (for-each delete-file
+                      '("src/borg/algorithms/checksums.c"
+                        "src/borg/chunker.c"
+                        "src/borg/compress.c"
+                        "src/borg/crypto/low_level.c"
+                        "src/borg/hashindex.c"
+                        "src/borg/item.c"
+                        "src/borg/platform/darwin.c"
+                        "src/borg/platform/freebsd.c"
+                        "src/borg/platform/linux.c"
+                        "src/borg/platform/posix.c"
+                        "src/borg/platform/syncfilerange.c"
+                        "src/borg/platform/windows.c"))))))
     (build-system pyproject-build-system)
     (arguments
      (list
       #:modules '((srfi srfi-26)        ; for cut
                   (guix build utils)
                   (guix build pyproject-build-system))
-      ;; tests: 1318 passed, 293 skipped
       #:test-flags
       #~(list "--benchmark-skip"
-              "--numprocesses" (number->string (min 8 (parallel-job-count)))
+              "--numprocesses" (number->string (parallel-job-count))
               "--pyargs" "borg.testsuite"
               "-k" (string-join
                     ;; These tests need to write to '/var'.
@@ -671,15 +687,7 @@ rsnapshot uses hard links to deduplicate identical files.")
                           "test_mount_hardlinks "
                           "test_readonly_mount "
                           "test_fuse_versions_view "
-                          "test_migrate_lock_alive"
-                          ;; Test files are not in /gnu/store
-                          "test_convert_all[False]"
-                          "test_convert_all[True]"
-                          "test_convert_segments[False]"
-                          "test_convert_segments[True]"
-                          "test_detect_attic_repo"
-                          "test_key_export_qr"
-                          "test_keys")
+                          "test_migrate_lock_alive")
                     " and not "))
       #:phases
       #~(modify-phases %standard-phases
@@ -695,58 +703,46 @@ rsnapshot uses hard links to deduplicate identical files.")
                 (setenv "BORG_LIBLZ4_PREFIX" lz4)
                 (setenv "BORG_LIBXXHASH_PREFIX" xxhash)
                 (setenv "BORG_LIBZSTD_PREFIX" zstd))))
-          (add-before 'build 'fix-testsuite-setuid-mode
+          (add-after 'install 'install-doc
             (lambda _
-              (substitute* "src/borg/testsuite/archiver.py"
-                (("0o4755") "0o0755"))))
-          (add-after 'install 'build-and-install-docs
-            (lambda _
-              (let* ((doc (string-append #$output "/share/doc/borg-" #$version))
-                     (html (string-append doc "/html"))
-                     (txt (string-append doc "/txt"))
-                     (misc (string-append doc "/misc"))
-                     (man (string-append #$output "/share/man/man1")))
-                (with-directory-excursion "docs"
-                  (invoke "make" "text" "man" "singlehtml"))
+              (let ((man (string-append #$output "/share/man/man1"))
+                    (misc (string-append #$output "/share/doc/borg-"
+                                         #$(package-version this-package))))
                 (for-each (cut install-file <> misc)
                           '("docs/misc/create_chunker-params.txt"
                             "docs/misc/borg-data-flow.png"
                             "docs/misc/internals-picture.txt"
                             "docs/misc/prune-example.txt"))
-                (copy-recursively "docs/_build/man" man)
-                (copy-recursively "docs/_build/singlehtml" html)
-                (copy-recursively "docs/_build/text" txt))))
-          (add-after 'build-and-install-docs 'install-shell-completions
+                (copy-recursively "docs/man" man))))
+          (add-after 'install-doc 'install-shell-completions
             (lambda _
-              (let* ((etc (string-append #$output "/etc"))
-                     (share (string-append #$output "/share"))
-                     (bash (string-append etc "/bash_completion.d"))
-                     (zsh (string-append share "/zsh/site-functions"))
-                     (fish (string-append share "/fish/vendor_completions.d")))
+              (let ((etc (string-append #$output "/etc"))
+                    (share (string-append #$output "/share")))
                 (with-directory-excursion "scripts/shell_completions"
-                  (install-file "bash/borg" bash)
-                  (install-file "zsh/_borg" zsh)
-                  (install-file "fish/borg.fish" fish))))))))
+                  (install-file "bash/borg"
+                                (string-append etc "/bash_completion.d"))
+                  (install-file "zsh/_borg"
+                                (string-append share "/zsh/site-functions"))
+                  (install-file "fish/borg.fish"
+                                (string-append share "/fish/vendor_completions.d")))))))))
     (native-inputs
      (list python-cython
-           python-guzzle-sphinx-theme
-           python-pkgconfig
+           python-dateutil
            python-pytest
            python-pytest-benchmark
            python-pytest-xdist
            python-setuptools
            python-setuptools-scm
-           python-sphinx
-           python-sphinxcontrib-jquery))
+           python-wheel))
     (inputs
      (list acl
            lz4
            openssl
-           python-msgpack
+           ;; This is the latest version of msgpack accepted by 'setup.py'.
+           python-msgpack-for-borg
            ;; FUSE 3 isn't working well, so we stick with FUSE 2 for now:
            ;; <https://issues.guix.gnu.org/53407>
            python-llfuse
-           python-packaging
            xxhash
            `(,zstd "lib")))
     (synopsis "Deduplicated, encrypted, authenticated and compressed backups")
@@ -897,7 +893,7 @@ is like a time machine for your data.")
 (define-public restic
   (package
     (name "restic")
-    (version "0.18.1")
+    (version "0.17.3")
     (source
      (origin
        (method git-fetch)
@@ -906,7 +902,7 @@ is like a time machine for your data.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0gxhknn022bwg2s8hababqg3vjkzflq59vr67y7r1c8fjnlsgf4l"))))
+        (base32 "1wsgq7f0bfi0i5iiwcc3hlf2lhxcnz3zfs8p8bc6l913r9hvyg1x"))))
     (build-system go-build-system)
     (arguments
      (list
@@ -915,18 +911,15 @@ is like a time machine for your data.")
       #:import-path "github.com/restic/restic/cmd/restic"
       #:unpack-path "github.com/restic/restic"
       #:embed-files #~(list "children" "nodes" "text")
+      #:test-flags
+      ;; Python is required.
+      #~(list "-skip" "TestStdinFromCommand|TestStdinFromCommandNoOutput")
       #:test-subdirs #~(list "../../...")
       #:phases
       #~(modify-phases %standard-phases
-          (add-after 'unpack 'fix-python-path
-            (lambda* (#:key inputs unpack-path #:allow-other-keys)
-              (with-directory-excursion (string-append "src/" unpack-path)
-                (substitute* "cmd/restic/cmd_backup_integration_test.go"
-                  (("python")
-                   (search-input-file inputs "/bin/python3"))))))
           (add-after 'install 'install-docs
-            (lambda* (#:key unpack-path #:allow-other-keys)
-              (with-directory-excursion (string-append "src/" unpack-path)
+            (lambda* (#:key import-path #:allow-other-keys)
+              (with-directory-excursion (string-append "src/" import-path)
                 (let* ((man "/share/man")
                        (man-section (string-append man "/man")))
                   ;; Install all the man pages to "out".
@@ -949,12 +942,12 @@ is like a time machine for your data.")
            go-github-com-cenkalti-backoff-v4
            go-github-com-cespare-xxhash-v2
            go-github-com-elithrar-simple-scrypt
-           ;; go-github-com-go-ole-go-ole       ;Windows only
+           ;; go-github-com-go-ole-go-ole ;windows only
            go-github-com-google-go-cmp
            go-github-com-hashicorp-golang-lru-v2
            go-github-com-klauspost-compress
-           ;; go-github-com-microsoft-go-winio  ;Windows only
            go-github-com-minio-minio-go-v7
+           go-github-com-minio-sha256-simd
            go-github-com-ncw-swift-v2
            go-github-com-peterbourgon-unixtransport
            go-github-com-pkg-errors
@@ -974,7 +967,6 @@ is like a time machine for your data.")
            go-golang-org-x-text
            go-golang-org-x-time
            go-google-golang-org-api
-           python-minimal
 
            ;; XXX: These packages have to be bootstrapped to break cycle with
            ;; go-google-golang-org-grpc.
@@ -1268,9 +1260,10 @@ compression parameters used by Gzip.")
 (define-public borgmatic
   (package
     (name "borgmatic")
-    (version "2.1.5")
+    (version "2.1.2")
     (source
      (origin
+       ;; PyPI archive does not contain NEWS file needed for one test.
        (method git-fetch)
        (uri (git-reference
               (url "https://projects.torsion.org/borgmatic-collective/borgmatic")
@@ -1278,11 +1271,10 @@ compression parameters used by Gzip.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "17i15ysg0wbcnfvki8wz2z9gx3zx99czv3czjh83y2m1xppvqbl5"))))
+         "0vrpl21n6hf3pj0di4n7s36jq64sx24c93j48cmbdgczs8jiwi36"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; tests: 2609 passed
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'configure
@@ -1297,12 +1289,19 @@ compression parameters used by Gzip.")
                 (("(module.get_local_path.+ == )'borg'" all start)
                  (string-append start "'"
                                 (search-input-file inputs "bin/borg")
-                                "'"))))))))
+                                "'")))))
+          (add-before 'check 'set-path
+            (lambda _
+              ;; Tests require the installed executable.
+              (setenv "PATH"
+                      (string-append #$output "/bin" ":"
+                                     (getenv "PATH"))))))))
     (native-inputs
      (list python-flexmock
            python-pytest
-           python-pytest-timeout
-           python-setuptools))
+           python-pytest-cov
+           python-setuptools
+           python-wheel))
     (inputs
      (list borg
            python-apprise
@@ -1364,9 +1363,9 @@ borgmatic is powered by borg.")
             (assoc-ref qt:%standard-phases 'qt-wrap)))))
     (native-inputs
      (list python-platformdirs
-           python-pytest
            python-pytest-mock
            python-pytest-qt
+           python-pytest-runner
            python-setuptools
            python-setuptools-git))
     (inputs

gnu/packages/benchmark.scm

@@ -13,7 +13,7 @@
 ;;; Copyright © 2021 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2022 Tomasz Jeneralczyk <tj@schwi.pl>
 ;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
-;;; Copyright © 2025-2026 Artyom V. Poptsov <poptsov.artyom@gmail.com>
+;;; Copyright © 2025 Artyom V. Poptsov <poptsov.artyom@gmail.com>
 ;;; Copyright © 2026 Sughosha <sughosha@disroot.org>
 ;;; Copyright © 2023 Advanced Micro Devices, Inc.
 ;;;
@@ -44,6 +44,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system gnu)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system meson)
   #:use-module (gnu packages)
@@ -679,26 +680,20 @@ the user is too low.  To raise such limit on a Guix System, refer to
          "0ifnw8vnkcgrksx7g5d9ii4kjppqnk32lvrybdybmibyvag6zfdc"))))
     (build-system gnu-build-system)
     (arguments
-     (list #:tests? #f                      ; no tests
-           #:make-flags
-           #~(list "CFLAGS=-g -O2 -Wno-error=implicit-function-declaration"
-                   (string-append "CC=" #$(cc-for-target)))
-           #:phases
-           #~(modify-phases %standard-phases
-               (add-after 'unpack 'fix-broken-makefile
-                 (lambda _
-                   ;; Remove erroneous "-lm" target
-                   (substitute* "Makefile"
-                     (("hackbench.o -lm") "hackbench.o"))))
-               (delete 'configure)
-               (replace 'install
-                 (lambda _
-                   (install-file "interbench"
-                                 (string-append #$output "/bin"))
-                   (install-file "interbench.8"
-                                 (string-append #$output
-                                                "/share/man/man8")))))))
-    (native-inputs (list gcc-10))
+     `(#:tests? #f                      ; no tests
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'fix-broken-makefile
+           (lambda _
+             ;; Remove erroneous "-lm" target
+             (substitute* "Makefile"
+               (("hackbench.o -lm") "hackbench.o"))))
+         (delete 'configure)
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let ((out (assoc-ref outputs "out")))
+               (install-file "interbench" (string-append out "/bin"))
+               (install-file "interbench.8" (string-append out "/share/man/man8"))))))))
     (home-page "http://users.on.net/~ckolivas/interbench/")
     (synopsis "Interactivity benchmark")
     (description "interbench is designed to benchmark interactivity on Linux.

gnu/packages/bioconductor.scm

@@ -6272,17 +6272,6 @@ for clusters.")
                 "1bvj7n2qxfvy1fmjqmm1w65fcj7fy5h74i0jgl0a0940mlhd7s9v"))))
     (properties `((upstream-name . "CelliD")))
     (build-system r-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          ;; "The `slot` argument of `GetAssayData()` was deprecated in
-          ;; SeuratObject 5.0.0 and is now defunct.", i = "Please use
-          ;; the `layer` argument instead."
-          (add-after 'unpack 'fix-deprecated-argument
-            (lambda _
-              (substitute* '("R/mca.R" "tests/testthat/test_CelliD.R")
-                (("slot") "layer")))))))
     (propagated-inputs
      (list r-biocparallel
            r-data-table

gnu/packages/bioinformatics.scm

@@ -65,6 +65,7 @@
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system r)
   #:use-module (guix build-system ruby)
@@ -2289,10 +2290,10 @@ version = ~s
                   (delete-file-recursively
                    (string-append #$output "/.pytest_cache")))))))))
     (native-inputs (list python-pytest
+                         python-pytest-cov
                          python-pytest-datadir
                          python-pytest-doctestplus
                          python-recommonmark
-                         python-setuptools
                          python-sphinx))
     (inputs (cons python-wrapper (cargo-inputs 'python-bed-reader)))
     (propagated-inputs (list python-numpy python-pandas python-scipy))
@@ -3323,17 +3324,7 @@ trees, synthetic data generation, or just phylogenetic tree simulation.")
               (commit (assoc-ref properties 'commit))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1x0c1zhlfplhm4n07vibvh4jprjsdlypnlig87a8r07d26d4qphh"))
-       (patches
-        (list
-         (origin
-           (method url-fetch)
-           (uri
-            (string-append "https://github.com/cancerit/parabam/commit/"
-                           "477246d7a13b227841bf49521181235c76afe75f.patch"))
-           (file-name (string-append name "-" version "-pull-16.patch"))
-           (sha256
-            (base32 "0znmyvrmwbscqymhsx60pnp9jhzpz94diyv409jygjm58hj5454z")))))))
+        (base32 "1x0c1zhlfplhm4n07vibvh4jprjsdlypnlig87a8r07d26d4qphh"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -3358,29 +3349,25 @@ defined rule on an input file.")
 (define-public python-pdbfixer
   (package
     (name "python-pdbfixer")
-    (version "1.12")
+    (version "1.9")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/openmm/pdbfixer")
-             (commit (string-append "v" version))))
+             (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0jj724fkvk7bk47izk92ss8nz9ymfvj0f1fkypc0ig4xd5qzjqsz"))))
+        (base32 "1zjhb19q5dclkwvzh8n29p31n1vzkhlmmzwqllimi89jsis1cx35"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       #:test-flags
-      ;; These tests fail because they require internet access or test data.
       '(list "-k"
-             (string-join (list "not test_build_and_simulate"
-                                "test_charge_and_solvate"
-                                "test_cli"
-                                "test_leaving_atoms"
-                                "test_mutate"
-                                "test_nonstandard")
-                          " and not "))))
+             ;; These tests fail because they require internet access.
+             (string-append "not test_build_and_simulate.py"
+                            " and not test_cli.py"
+                            " and not test_mutate.py"))))
     (propagated-inputs (list openmm python-numpy))
     (native-inputs (list python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/openmm/pdbfixer")
@@ -3394,36 +3381,35 @@ encountered in PDB files prior to simulation tasks.")
 (define-public python-peaks2utr
   (package
     (name "python-peaks2utr")
-    (version "1.5.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/haessar/peaks2utr")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1b4qiccp5j394pzqd1d4ss3k90zv3kdr84lykl6p8izn3k85b2bl"))))
+    (version "1.4.1")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "peaks2utr" version))
+              (sha256
+               (base32
+                "104il0kk61q07b58g9xrss7xflwlbx4kzsmw9iih99lhfsii0wzg"))))
     (build-system pyproject-build-system)
     (arguments
      (list
+      #:test-flags
+      ;; These tests fail because file names are not URLs.
+      '(list "-k" (string-join
+                   (list "not test_forward_strand_annotations"
+                         "test_matching_chr"
+                         "test_reverse_strand_annotations")
+                   " and not "))
       #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'relax-requirements
-            (lambda _
-              (substitute* "setup.cfg"
-                (("==") ">=")
-                ;; See: <https://github.com/haessar/peaks2utr/issues/47>.
-                (("numpy >= 1.21.4, <= 1.26.4") "numpy >= 1.21.4")))))))
-    (native-inputs
-     (list python-pytest
-           python-setuptools))
+      '(modify-phases %standard-phases
+         (add-after 'unpack 'relax-requirements
+           (lambda _
+             (substitute* "setup.cfg"
+               (("==") ">=")))))))
     (propagated-inputs
      (list python-asgiref
            python-gffutils
            python-importlib-resources
-           macs-3
-           python-numpy
+           macs
+           python-numpy-1
            python-psutil
            python-pybedtools
            python-pysam
@@ -3431,6 +3417,7 @@ encountered in PDB files prior to simulation tasks.")
            python-tqdm
            python-typing-extensions
            python-zipp))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/haessar/peaks2utr")
     (synopsis "Python CLI for annotating three prime UTR")
     (description
@@ -3879,6 +3866,7 @@ raw/ed14e050b2b75e7f4ddb73d512fbe928bbdb2b85")
            python-scipy))
     (native-inputs
      (list python-pytest
+           python-pytest-cov
            python-pytest-datadir
            python-pytest-doctestplus
            python-setuptools
@@ -4051,16 +4039,7 @@ counts.")
                      "test_scatter_rotate_mp4"
                      "test_sparse_svd"
                      "test_to_array_or_spmatrix_list_of_strings"
-                     "test_unzip_no_destination"
-                     ;; AttributeError: module 'rpy2' has no attribute
-                     ;; '__version__'
-                     "test_verbose"
-                     "test_conversion_list"
-                     "test_conversion_dict"
-                     "test_conversion_array"
-                     "test_conversion_dataframe"
-                     "test_conversion_anndata_missing"
-                     "test_r_traceback)")
+                     "test_unzip_no_destination)")
                "|")
               "test")
       #:phases
@@ -4313,6 +4292,7 @@ e.g. microbiome samples, genomes, metagenomes.")
     (native-inputs
      (list python-cython
            python-pytest
+           python-pytest-cov
            python-setuptools
            python-wheel))
     (propagated-inputs
@@ -6988,6 +6968,7 @@ and v1.1 to v1.2.")
      (list python-mypy-extensions
            python-pytest
            python-pytest-mock
+           python-pytest-runner
            python-setuptools
            python-wheel))
     (propagated-inputs
@@ -7670,6 +7651,78 @@ reads at a typical sensitivity of 90-99% relative to BLAST depending on the
 data and settings.")
     (license license:gpl3+)))
 
+(define-public discrover
+  (package
+    (name "discrover")
+    (version "1.6.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/maaskola/discrover")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "173fwi2vb6a5kp406hm3jj6j7v4whww796f2qcygp4rpvamh307y"))))
+    (build-system cmake-build-system)
+    (arguments
+     `(#:tests? #f                      ; there are no tests
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'build 'set-force-source-date
+           ;; for reproducible dates, texlive needs this to respect
+           ;; SOURCE_DATE_EPOCH
+           (lambda _
+             (setenv "FORCE_SOURCE_DATE" "1")))
+         (add-before 'build 'use-writable-texmfvar
+           ;; Use writable TEXMFVAR to generate fonts.
+           (lambda _
+             (setenv "TEXMFVAR" "/tmp")))
+         (add-after 'unpack 'fix-latex-errors
+           (lambda _
+             (with-fluids ((%default-port-encoding #f))
+               (substitute* "doc/references.bib"
+                 (("\\{S\\}illanp[^,]+,")
+                  "{S}illanp{\\\"a}{\\\"a},")))
+             ;; XXX: I just can't get pdflatex to not complain about these
+             ;; characters.  They end up in the manual via the generated
+             ;; discrover-cli-help.txt.
+             (substitute* "src/hmm/cli.cpp"
+               (("µ") "mu")
+               (("η") "eta")
+               (("≤") "<="))
+             ;; This seems to be a syntax error.
+             (substitute* "doc/discrover-manual.tex"
+               (("theverbbox\\[t\\]") "theverbbox"))))
+         (add-after 'unpack 'add-missing-includes
+           (lambda _
+             (substitute* "src/executioninformation.hpp"
+               (("#define EXECUTIONINFORMATION_HPP" line)
+                (string-append line "\n#include <random>")))
+             (substitute* "src/plasma/fasta.hpp"
+               (("#define FASTA_HPP" line)
+                (string-append line "\n#include <random>"))))))))
+    (inputs
+     (list boost cairo rmath-standalone))
+    (native-inputs
+     (list (texlive-local-tree
+            (list texlive-doi
+                  texlive-etoolbox
+                  texlive-examplep
+                  texlive-forloop
+                  texlive-listofitems
+                  texlive-natbib
+                  texlive-pgf           ;tikz
+                  texlive-readarray
+                  texlive-verbatimbox))
+           imagemagick))
+    (home-page "https://dorina.mdc-berlin.de/public/rajewsky/discrover/")
+    (synopsis "Discover discriminative nucleotide sequence motifs")
+    (description "Discrover is a motif discovery method to find binding sites
+of nucleic acid binding proteins.")
+    (license license:gpl3+)))
+
 (define-public eddylab-squid
   (package
     (name "eddylab-squid")
@@ -7905,7 +7958,7 @@ software to answer ad hoc questions.")
            r-tidyr
            r-upsetr
            r-yaml
-           snakemake))
+           snakemake-7))
     (native-inputs (list python-cython python-pyfakefs python-pytest))
     (home-page "https://github.com/dieterich-lab/Baltica")
     (synopsis "Integrated splice junction usage analysis")
@@ -8795,8 +8848,7 @@ high-throughput sequencing (HTS) assays")
          ;; Needed by tests
          (add-after 'unpack 'set-HOME
            (lambda _ (setenv "HOME" "/tmp"))))))
-    (propagated-inputs (list mysql-connector-python
-                             python-appdirs
+    (propagated-inputs (list python-appdirs
                              python-biopython
                              python-click
                              python-colorama
@@ -8804,6 +8856,7 @@ high-throughput sequencing (HTS) assays")
                              python-filelock
                              python-loguru
                              python-mygene
+                             python-mysql-connector-python
                              python-norns
                              python-numpy
                              python-pandas
@@ -9524,16 +9577,16 @@ data.  It also provides the @command{bgzip}, @command{htsfile}, and
 (define-public idr
   (package
     (name "idr")
-    (version "2.0.4.2")
+    (version "2.0.3")
     (source (origin
               (method git-fetch)
               (uri (git-reference
-                    (url "https://github.com/kundajelab/idr")
+                    (url "https://github.com/nboley/idr")
                     (commit version)))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "01491ffhhj5plmpvvwmzp6c5arp5390h3jdpgsai92y6xbsgvxz8"))
+                "04j876h6z444v2q79drxx283d3k5snd72kj895wbalnl42206x9g"))
               ;; Delete generated C code.
               (snippet
                '(begin (delete-file "idr/inv_cdf.c") #t))))
@@ -9541,21 +9594,11 @@ data.  It also provides the @command{bgzip}, @command{htsfile}, and
     ;; There is only one test ("test_inv_cdf.py") and it tests features that
     ;; are no longer part of this package.  It also asserts False, which
     ;; causes the tests to always fail.
-    (arguments
-     (list
-      #:tests? #f
-      #:phases
-      '(modify-phases %standard-phases
-         (add-after 'unpack 'numpy-compatibility
-           (lambda _
-             (substitute* "idr/idr.py"
-               (("numpy.int") "int"))
-             (substitute* "idr/inv_cdf.pyx"
-               (("np.int_t") "np.int64_t")))))))
+    (arguments `(#:tests? #f))
     (propagated-inputs
-     (list python-scipy python-sympy python-numpy python-matplotlib))
+     (list python-scipy python-sympy python-numpy-1 python-matplotlib))
     (native-inputs
-     (list python-cython
+     (list python-cython-0
            python-setuptools))
     (home-page "https://github.com/nboley/idr")
     (synopsis "Tool to measure the irreproducible discovery rate (IDR)")
@@ -9769,39 +9812,29 @@ sequencing tag position and orientation.")
 (define-public macs-3
   (package
     (name "macs")
-    (version "3.0.4")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/macs3-project/MACS")
-              (commit (string-append "v" version))
-              (recursive? #true)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "16cv6bvvppi0z69r5l357ai8x4jg61rx8xrvcapk1wz6mh9naf5s"))))
+    (version "3.0.3")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/macs3-project/MACS")
+                    (commit (string-append "v" version))
+                    (recursive? #true)))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "08hi0a2a0md9gfg7jc75wxv69rggv2yqfd1hyrg4mi5bhi712m0v"))))
     (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:test-flags
-      ;; AssertionError: np.float32(1.0) != np.float64(-1.0)
-      ;; calculated step by step:
-      ;;  6.559423e-18
-      ;; expected:
-      ;;  -2.98155597e-18
-      #~(list (string-append "--deselect=test/test_SignalProcessing.py::"
-                             "Test_maxima::test_implement_smooth_here"))))
-    (native-inputs
-     (list python-cython
-           python-pytest
-           python-setuptools
-           zlib))
     (propagated-inputs
      (list python-cykhash
            python-hmmlearn
            python-numpy
            python-scikit-learn
            python-scipy))
+    (native-inputs
+     (list python-cython
+           python-pytest
+           python-setuptools
+           zlib))
     (home-page "https://github.com/macs3-project/MACS")
     (synopsis "Model based analysis for ChIP-Seq data")
     (description
@@ -12360,9 +12393,15 @@ Cuffdiff or Ballgown programs.")
               ;; This version file is expected to be created with git describe.
               (mkdir-p "taxtastic/data")
               (with-output-to-file "taxtastic/data/ver"
-                (lambda () (display #$version))))))))
+                (lambda () (display #$version)))))
+          (replace 'check
+            ;; Note, this fails to run with "-v" as it tries to write to a
+            ;; closed output stream.
+            (lambda* (#:key tests? test-flags #:allow-other-keys)
+              (when tests?
+                (apply invoke "python" "-m" "unittest" test-flags)))))))
     (native-inputs
-     (list python-pytest python-setuptools))
+     (list python-setuptools python-wheel))
     (propagated-inputs
      (list python-biopython
            python-decorator
@@ -14268,7 +14307,11 @@ quality control are provided.")
             (lambda _
               (substitute* "setup.cfg"
                 (("intervaltree~=3.0.2") "intervaltree")
-                (("termcolor~=1.1.0") "termcolor")))))))
+                (("termcolor~=1.1.0") "termcolor"))))
+          (add-after 'unpack 'fix-pytest-config
+            (lambda _
+              (substitute* "pyproject.toml"
+                ((" --cov=gdc_client --cov-report term") "")))))))
     (native-inputs
      (list python-flask
            python-httmock
@@ -14558,7 +14601,7 @@ data.  It also generates basic statistics for your sequences.")
 (define-public shorah
   (package
     (name "shorah")
-    (version "1.99.3")
+    (version "1.99.2")
     (source
      (origin
        (method url-fetch)
@@ -14567,7 +14610,7 @@ data.  It also generates basic statistics for your sequences.")
                            "/shorah-" version ".tar.xz"))
        (sha256
         (base32
-         "0zclbvdvbbfv3qpln3f47qa1yn77wf68z2b30vcxrzq3vsla4kgb"))))
+         "158dir9qcqspknlnyfr9zwk41x48nrh5wcg10k2grh9cidp9daiq"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases
@@ -14602,7 +14645,6 @@ data.  It also generates basic statistics for your sequences.")
            python
            python-biopython
            python-numpy
-           python-setuptools
            zlib))
     (native-inputs
      (list pkg-config))
@@ -16020,7 +16062,7 @@ dispersal.  Its output can be processed by treeannotator (from the
     (inputs
      (list boost-for-mysql
            cereal
-           cgal-5
+           cgal
            gsl
            hdf5
            fftw
@@ -17888,7 +17930,7 @@ expression report comparing samples in an easily configurable manner.")
 (define-public pigx-chipseq
   (package
     (name "pigx-chipseq")
-    (version "0.2.0")
+    (version "0.1.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/BIMSBbioinfo/pigx_chipseq/"
@@ -17896,7 +17938,7 @@ expression report comparing samples in an easily configurable manner.")
                                   "/pigx_chipseq-" version ".tar.gz"))
               (sha256
                (base32
-                "09m1bpjapfxwhzrnvfs2g2zv28k6af7yf7s5ji861nb9bwlkmyi7"))))
+                "008n6drj9q5av86xihxlj4py2c9p3c5z5ld89c3bksrp77zxiy67"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f ; parts of the tests rely on access to the network
@@ -17947,7 +17989,7 @@ expression report comparing samples in an easily configurable manner.")
            python-magic
            python-xlrd
            trim-galore
-           macs-3
+           macs
            multiqc
            perl
            pandoc
@@ -18072,8 +18114,6 @@ methylation and segmentation.")
              (setenv "NUMBA_CACHE_DIR" "/tmp")
              ;; Needed to capture environment
              (setenv "PYTHONPATH" (getenv "GUIX_PYTHONPATH")))))))
-    (native-inputs
-     (list python-setuptools))
     (inputs
      (list coreutils
            perl
@@ -19890,8 +19930,8 @@ set.")
     (name "instrain")
     ;; Git repository does not tag releases, use the latest commit from master
     ;; branch.
-    (properties '((commit . "f172367e599851a6cb90048ae890d1bb6569063f")
-                  (revision . "1")))
+    (properties '((commit . "6180be7b49a61b7e1ffe9f1489da5c6aa2ff9ac3")
+                  (revision . "0")))
     (version (git-version "1.10.0"
                           (assoc-ref properties 'revision)
                           (assoc-ref properties 'commit)))
@@ -19903,32 +19943,18 @@ set.")
               (commit (assoc-ref properties 'commit))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "12rrkcckna7k095clir9100cz6i5dn77anih6aq1blbsg4yhprnr"))))
+        (base32 "1njsxjf3248121yw3q1ig6asf6b3wa5fgjfyc6dkgk6nd4ih8wni"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; tests: 10 failed, 86 passed, 15 skipped, 220 warnings
-      #:test-flags
-      #~(list #$@(map (lambda (test)
-                        (string-append "--deselect=test/tests/" test))
-                      ;; Mixture of "FileNotFoundError" and "AssertionError"
-                      ;; errors.
-                      (list "test_genes.py::test_genes_0"
-                            "test_genes.py::test_genes_1"
-                            "test_genes.py::test_genes_2"
-                            "test_genes.py::test_genes_3"
-                            "test_parse_gene_annotations.py::test_PA_2"
-                            "test_polymorpher.py::test_polymorpher_unit_0"
-                            "test_polymorpher.py::test_polymorpher_unit_3"
-                            "test_quick_profile.py::test_quick_profile_0"
-                            "test_quick_profile.py::test_quick_profile_1"
-                            "test_quick_profile.py::test_quick_profile_2")))
+      ;; Tests assume that test files exist (they don't) and are located in
+      ;; the developer's home directory, see:
+      ;; <https://github.com/MrOlm/inStrain/issues/218>.
+      #:tests? #false
       #:phases
       #~(modify-phases %standard-phases
          (add-after 'unpack 'patch-relative-imports
            (lambda _
-             ;; See: <https://github.com/MrOlm/inStrain/issues/218>.
-             (mkdir "test/test_backend/")
              (substitute* (find-files "test/tests" "test_.*\\.py")
                (("from test_utils import BTO")
                 "from .test_utils import BTO")
@@ -19941,10 +19967,9 @@ set.")
          (add-after 'unpack 'relax-requirements
            (lambda _
              (substitute* "setup.py"
-               (("biopython<=1.74") "biopython")
                ((".*pytest.*") "")))))))
     (propagated-inputs
-     (list python-biopython
+     (list python-biopython-1.73
            python-h5py
            python-lmfit
            python-matplotlib
@@ -19956,9 +19981,7 @@ set.")
            python-seaborn
            python-tqdm))
     (native-inputs
-     (list python-boto3
-           python-pytest
-           python-setuptools))
+     (list python-setuptools))
     (home-page "https://github.com/MrOlm/inStrain")
     (synopsis "Calculation of strain-level metrics")
     (description
@@ -20189,32 +20212,33 @@ fasta subsequences.")
 (define-public python-cooler
   (package
     (name "python-cooler")
-    ;; 0.10.4 (2025-07-21), the latest changes provide support for Python
-    ;; 3.12+; move back to git tag when released.
-    (properties '((commit . "6c2d65b1420a636193b7f05100a96410ea252147")
-                  (revision . "0")))
-    (version (git-version "0.10.4"
-                          (assoc-ref properties 'revision)
-                          (assoc-ref properties 'commit)))
+    (version "0.10.4")
     (source
      (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/open2c/cooler")
-              (commit (assoc-ref properties 'commit))))
-       (file-name (git-file-name name version))
+       (method url-fetch)
+       (uri (pypi-uri "cooler" version))
        (sha256
-        (base32 "0xdb7lvyzj3wwv6jhkrxlj7gk830wkac4lwq5rjwk1r5qshjbn3n"))))
+        (base32
+         "1fh5wjffbl5j8fdkc3c3lybscwvhv4v6r5jiyqgxvkkhb5nn498w"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; tests: 141 passed, 4 skipped, 2 deselected, 270 warnings
+      ;; tests: 141 passed, 4 skipped, 2 deselected, 268 warnings
       #:test-flags
-      ;; This test depends on ipytree, which contains a lot of minified
-      ;; JavaScript.
-      #~(list "--deselect=tests/test_fileops.py::test_print_trees"
-              ;; Network access is required.
-              "--deselect=tests/test_create.py::test_roundtrip")))
+      '(list "-k"
+             (string-append
+              ;; These tests download files from the internet.
+              "not test_fetch_chromsizes"
+              " and not test_roundtrip"
+              ;; This test depends on ipytree, which contains a lot of
+              ;; minified JavaScript.
+              " and not test_print_trees"))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-pytest-config
+            (lambda _
+              (substitute* "pyproject.toml"
+                ((".*--cov.*") "")))))))
     (native-inputs
      (list python-hatchling
            python-pytest))
@@ -20616,8 +20640,8 @@ and intra-cell population structure.\" Baron et al. Cell Systems (2016)
 (define-public porechop
   ;; The recommended way to install is to clone the git repository
   ;; https://github.com/rrwick/Porechop#installation
-  (let ((commit "109e437280436d1ec27e5a5b7a34ffb752176390")
-        (revision "2"))
+  (let ((commit "289d5dca4a5fc327f97b3f8cecb68ecaf1014861")
+        (revision "1"))
     (package
       (name "porechop")
       (version (git-version "0.2.3" revision commit))
@@ -20625,28 +20649,13 @@ and intra-cell population structure.\" Baron et al. Cell Systems (2016)
        (origin
          (method git-fetch)
          (uri (git-reference
-                (url "https://github.com/rrwick/Porechop")
-                (commit commit)))
+               (url "https://github.com/rrwick/Porechop")
+               (commit commit)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "0m7bsgvknv0cbkrpc0qi7b39jaws38dcdih4hi2ppg6z7byxip0k"))))
+          (base32 "05ps43gig0d3ia9x5lj84lb00hbsl6ba9n7y7jz927npxbr2ym23"))))
       (build-system pyproject-build-system)
-      (arguments
-       (list
-        #:test-flags
-        ;; Tests fail with errors: "SyntaxWarning: invalid escape sequence"
-        ;; and "AssertionError: Lists differ".
-        #~(list "-k" (string-join
-                      (list "not test_albacore_directory_all"
-                            "test_albacore_directory_unclassified"
-                            "test_verbosity_0_output"
-                            "test_albacore_directory_3"
-                            "test_verbosity_1_output"
-                            "test_verbosity_2_output")
-                      " and not "))))
-      (native-inputs
-       (list python-pytest
-             python-setuptools))
+      (native-inputs (list python-setuptools python-wheel python-pytest))
       (home-page "https://github.com/rrwick/porechop")
       (synopsis
        "Finding, trimming or splitting adapters, in Oxford Nanopore reads")
@@ -21931,10 +21940,6 @@ pycisTarget and SCENIC.")
       #:test-backend #~'unittest
       #:phases
       #~(modify-phases %standard-phases
-          (add-after 'unpack 'python-3.12-compatibility
-            (lambda _
-              (substitute* (find-files "tests" "\\.py")
-                (("assertEquals") "assertEqual"))))
           (add-after 'unpack 'disable-failing-tests
             (lambda _
               (substitute* "tests/test_algo.py"
@@ -23148,7 +23153,7 @@ genomes known to contain a given k-mer.")
     (inputs
      (list htslib python-wrapper zlib))
     (native-inputs
-     (list autoconf automake python-setuptools which))
+     (list autoconf automake which))
     (home-page "https://csb5.github.io/lofreq/")
     (synopsis "Sensitive variant calling from sequencing data")
     (description "LoFreq is a fast and sensitive variant-caller for inferring

gnu/packages/bittorrent.scm

@@ -86,6 +86,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix download)
   #:use-module (guix gexp)
@@ -360,18 +361,18 @@ Transmission BitTorrent daemon.")
     (name "aria2")
     (version "1.37.0")
     (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/aria2/aria2")
-                     (commit (string-append "release-" version))))
+              (method url-fetch)
+              (uri (string-append "https://github.com/aria2/aria2/releases/"
+                                  "download/release-" version
+                                  "/aria2-" version ".tar.xz"))
               (sha256
                (base32
-                "1yr9yxr7z3bdg51afpzj0i63xl2rdk1prl20qws21y6r1x58vf65"))
-              (file-name (git-file-name name version))
+                "0sxng4pynhj2qinranpv6wyzys3d42kz1gg2nrn63sw5f2nj1930"))
               (patches (search-patches "aria2-unbundle-wslay.patch"))
               (snippet
                #~(begin (use-modules (guix build utils))
-                        (delete-file-recursively "deps")))))
+                        (delete-file-recursively "deps")
+                        (delete-file "configure")))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -381,13 +382,10 @@ Transmission BitTorrent daemon.")
                               #$output "/etc/bash_completion.d/"))
        #:phases
        #~(modify-phases %standard-phases
-           (add-after 'unpack 'update-gettext-version
+           (add-after 'unpack 'patch-configure
              (lambda _
                (substitute* "configure.ac"
-                 (("AM_GNU_GETTEXT_VERSION\\(.*\\)")
-                  (format #f "AM_GNU_GETTEXT_VERSION([~a])"
-                          #$(package-version (this-package-native-input
-                                              "gettext-minimal")))))))
+                 (("0[.]18") "0.19.6"))))
            (add-after 'unpack 'delete-socket-tests
              (lambda _
                (substitute* "test/LpdMessageDispatcherTest.cc"
@@ -419,6 +417,8 @@ Transmission BitTorrent daemon.")
       "Aria2 is a lightweight, multi-protocol & multi-source command-line
 download utility.  It supports HTTP/HTTPS, FTP, SFTP, BitTorrent and Metalink.
 Aria2 can be manipulated via built-in JSON-RPC and XML-RPC interfaces.")
+    (properties
+     '((release-monitoring-url . "https://github.com/aria2/aria2/releases")))
     (license license:gpl2+)))
 
 (define-public uget
@@ -533,9 +533,8 @@ and will take advantage of multiple processor cores where possible.")
     (inputs (list boost-1.83 openssl))
     (native-inputs
      (list libfaketime
-           pkg-config
-           python-setuptools
-           python-wrapper))
+           python-wrapper
+           pkg-config))
     (home-page "https://www.libtorrent.org/")
     (synopsis "Feature-complete BitTorrent implementation")
     (description

gnu/packages/books.scm

@@ -334,7 +334,7 @@ parallel study, and original language study.")
 (define-public book-emacs-lisp-elements
   (package
     (name "book-emacs-lisp-elements")
-    (version "2.0.4")
+    (version "2.0.1")
     (source
      (origin
        (method git-fetch)
@@ -343,7 +343,7 @@ parallel study, and original language study.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "06mhrb16h93n3s3srcfgmzsyh2lxx4ffj1di6qvczfg4039pi3c8"))))
+        (base32 "0774zycgx3zspn6f8pszap1751xgrlv2h3x66kksnj589nfnwzil"))))
     (build-system emacs-build-system)
     (arguments
      (list

gnu/packages/boost.scm

@@ -83,6 +83,9 @@
     (build-system gnu-build-system)
     (arguments
      (list
+      #:imported-modules %pyproject-build-system-modules
+      #:modules `(((guix build pyproject-build-system) #:select (python-version))
+                  ,@%default-gnu-modules)
       #:tests? #f
       #:configure-flags
       #~(let ((icu (dirname (dirname (search-input-file
@@ -91,26 +94,17 @@
            ;; Auto-detection looks for ICU only in traditional
            ;; install locations.
            (string-append "--with-icu=" icu)
-           ;; Ditto for Python.  The Gexp can't be evaluated if python is not
-           ;; in the inputs (e.g. boost-for-mysql), so delay its evaluation
-           ;; after checking for python, rather than concurrently.
-           #$@(force
-               (if (or (%current-target-system)
-                       (not (this-package-input "python-minimal-wrapper")))
-                   (delay
-                     #~())
-                   (delay
-                     #~((let ((python (dirname (dirname (search-input-file
-                                                         %build-inputs
-                                                         "bin/python")))))
-                          (string-append "--with-python-root=" python)
-                          (string-append "--with-python=" python
-                                         "/bin/python")
-                          (string-append "--with-python-version="
-                                         #$(version-major+minor
-                                            (package-version
-                                             (this-package-input
-                                              "python-minimal-wrapper")))))))))
+           ;; Ditto for Python.
+           #$@(if (%current-target-system)
+                  #~()
+                  #~((let ((python (dirname (dirname (search-input-file
+                                                      %build-inputs
+                                                      "bin/python")))))
+                       (string-append "--with-python-root=" python)
+                       (string-append "--with-python=" python
+                                      "/bin/python")
+                       (string-append "--with-python-version="
+                                      (python-version python)))))
            "--with-toolset=gcc"))
       #:make-flags
       #~(list "threading=multi" "link=shared"
@@ -206,39 +200,29 @@
           (replace 'install
             (lambda* (#:key make-flags #:allow-other-keys)
               (apply invoke "./b2" "install" make-flags)))
-          #$@(force  ; See above for why the force is necessary.
-              (if (or (%current-target-system)
-                      (not (this-package-input "python-minimal-wrapper")))
-                  (delay
-                    #~())
-                  (delay
-                    #~((add-after 'install 'provide-libboost_python
-                         (lambda* (#:key make-flags inputs outputs
-                                   #:allow-other-keys)
-                           (let* ((static? (member "link=static" make-flags))
-                                  (ext (if static? ".a" ".so"))
-                                  (python (dirname
-                                           (dirname (search-input-file
-                                                     inputs "bin/python"))))
-                                  (python-version
-                                   #$(version-major+minor
-                                      (package-version
-                                       (this-package-input
-                                        "python-minimal-wrapper"))))
-                                  (NN (string-join (string-split
-                                                    python-version #\.)
-                                                   ""))
-                                  (libboost_pythonNN
-                                   (string-append "libboost_python" NN ext))
-                                  (major (string-take python-version 1)))
-                             (with-directory-excursion
-                                 (string-append #$output "/lib")
-                               (symlink libboost_pythonNN
-                                        (string-append "libboost_python" ext))
-                               ;; Some packages only look for the major version.
-                               (symlink libboost_pythonNN
-                                        (string-append "libboost_python"
-                                                       major ext)))))))))))))
+          #$@(if (%current-target-system)
+                 #~()
+                 #~((add-after 'install 'provide-libboost_python
+                      (lambda* (#:key make-flags inputs outputs #:allow-other-keys)
+                        (let* ((static? (member "link=static" make-flags))
+                               (libext (if static? ".a" ".so"))
+                               (python (dirname (dirname (search-input-file
+                                                          inputs "bin/python"))))
+                               (python-version (python-version python))
+                               (libboost_pythonNN
+                                (string-append "libboost_python"
+                                               (string-join (string-split
+                                                             python-version #\.)
+                                                            "")
+                                               libext)))
+                          (with-directory-excursion (string-append #$output "/lib")
+                            (symlink libboost_pythonNN
+                                     (string-append "libboost_python" libext))
+                            ;; Some packages only look for the major version.
+                            (symlink libboost_pythonNN
+                                     (string-append "libboost_python"
+                                                    (string-take python-version 1)
+                                                    libext)))))))))))
     (inputs
      (append
       (list icu4c zlib)

gnu/packages/bootloaders.scm

@@ -267,8 +267,8 @@
              ;; rebooting.
              (if (member (or (%current-target-system)
                              (%current-system))
-                           (package-supported-systems fuse))
-                 (list fuse)
+                           (package-supported-systems fuse-2))
+                 (list fuse-2)
                  '())))
     (native-inputs
      (append (list pkg-config

gnu/packages/browser-extensions.scm

@@ -69,55 +69,6 @@ match website theme.")
 (define-public adaptive-tab-bar-colour/icecat
   (make-icecat-extension adaptive-tab-bar-colour))
 
-(define canvasblocker
-  (package
-    (name "canvasblocker")
-    (version "1.12")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/kkapsner/CanvasBlocker")
-             (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0xxs6s7nrl4y4qiw2cpkqh170mbv78n0ixd874a72jjvczw2vpg7"))
-       (modules '((guix build utils) (ice-9 match) (ice-9 ftw)))
-       (snippet
-        #~(begin
-            (for-each delete-file
-                      '("canvasblocker.xpi" "package-lock.json"))
-            ;; Delete all hidden files/directories except .tools.
-            (for-each
-             (match-lambda
-               ((or "." ".tools" ".."
-                    (? (lambda (name)
-                         (not (string-prefix? "." name)))))
-                #t)
-               ((? file-is-directory? dir)
-                (delete-file-recursively dir))
-               (file
-                (delete-file file)))
-             (scandir "."))))))
-    (build-system copy-build-system)
-    (properties '((addon-id . "CanvasBlocker@kkapsner.de")))
-    (arguments
-     (list
-      #:install-plan  ;deduced from .tools/build.js
-      #~'(("." #$(assq-ref properties 'addon-id)
-           #:exclude ("crowdin.yml" "package.json" "releaseNotes.txt")
-           #:exclude-regexp ("test/.*" "versions/.*" ".tools/*")))))
-    (home-page "https://github.com/kkapsner/CanvasBlocker")
-    (synopsis "Firefox extension to protect from being fingerprinted")
-    (description "This extension allows users to prevent websites from using
-some Javascript APIs to fingerprint them.  Users can choose to block the APIs
-entirely on some or all websites (which may break some websites) or just block
-or fake its fingerprinting-friendly readout API.")
-    (license license:mpl2.0)))
-
-(define-public canvasblocker/icecat
-  (make-icecat-extension canvasblocker))
-
 (define play-to-kodi
   (package
     (name "play-to-kodi")
@@ -312,7 +263,7 @@ fill and submit login forms if a matching password entry is found.")
 (define keepassxc-browser
   (package
     (name "keepassxc-browser")
-    (version "1.9.10")
+    (version "1.9.9.6")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -322,7 +273,7 @@ fill and submit login forms if a matching password entry is found.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "18kgmdvsq1kv9px8a1m7i10r4m0iik72qlnw9k2ijxmn1xikfyfb"))
+                "1chw1y1332zn69s7kf5mkljc1bp2xfvl3zzvafnalv3zj2jsa5cs"))
 	      ;;  Default 'manifest.json' targets chromium based browsers and
 	      ;;  depends on background.service_worker support.
 	      ;;  See: <https://bugzilla.mozilla.org/show_bug.cgi?id=1573659>
@@ -377,7 +328,7 @@ with the @uref{https://keepassxc.org, KeePassXC} password manager.")
 (define noscript
   (package
     (name "noscript")
-    (version "13.6.19.1984")
+    (version "13.6.18.1984")
     (source (origin
               (method url-fetch/zipbomb)
               (uri (string-append
@@ -385,7 +336,7 @@ with the @uref{https://keepassxc.org, KeePassXC} password manager.")
                     version ".xpi"))
               (sha256
                (base32
-                "1lb3855w34avs7idvycv8cfpjnpic2mnsh9yqkidrdw7msr0na74"))))
+                "0assv8v89hhg302q81vvv7ln3q8k9m6rzjkbprv2j05ghb23kkvm"))))
     (build-system copy-build-system)
     (properties '((addon-id . "{73a6fe31-595d-460b-a920-fcc0f8843232}")))
     (arguments

gnu/packages/build-tools.scm

@@ -94,6 +94,7 @@
   #:use-module (guix build-system hare)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system trivial)
   #:use-module (guix deprecation)
   #:use-module (guix download)
@@ -274,14 +275,14 @@ generate such a compilation database.")
 (define-public bmake
   (package
     (name "bmake")
-    (version "20260508")
+    (version "20260406")
     (source
      (origin
        (method url-fetch)
        (uri (string-append
              "http://www.crufty.net/ftp/pub/sjg/bmake-" version ".tar.gz"))
        (sha256
-        (base32 "0b58j7l53jbqaxcfggimdbylf71hbyfm44m6s4646ry7mf8fl7kv"))
+        (base32 "09nzd9v12n2pwxmf67056kzjnvxcpk5q2x1fs5qkrsk1ssh5yvpd"))
        (patches (search-patches "bmake-run-check-separately.patch"))))
     (build-system gnu-build-system)
     (inputs
@@ -431,8 +432,9 @@ files and generates build instructions for the Ninja build system.")
     (arguments
      (list
       #:tests? #f                       ;disabled to avoid extra dependencies
-      ;; Custom build steps to prevent using pyproject-build-system which
-      ;; allows to edit the latter without a C++ world rebuild.
+      ;; Essentially a lighter copy of the former python-build-system.
+      ;; Using it rather than pyproject-build-system allows to edit the latter
+      ;; without a C++ world rebuild.
       #:phases
       #~(modify-phases %standard-phases
           (delete 'bootstrap)
@@ -1450,36 +1452,3 @@ It is an alternative to e.g. @command{make(1)} and @command{redo(1)}.  Features:
 @end itemize
 ")
     (license license:wtfpl2)))
-
-(define-public xmake
-  (package
-   (name "xmake")
-   (version "3.0.8")
-   (source (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/xmake-io/xmake.git")
-             (commit (string-append "v" version))
-             ;; Requires some dependencies from "xmake-core-*" repos
-             (recursive? #t)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1pdjz52w9lzfbcpx9wmzy0bsjg7i19xz43f63czk7jz9v0xba6gi"))))
-   (build-system gnu-build-system)
-   (arguments
-    (list
-     ;; No check rule in make
-     ;; TODO: find how to run Lua tests in "test" directory
-     #:tests? #f))
-   (home-page "https://xmake.io/")
-   (synopsis "Cross-platform build utility based on Lua")
-   (description "@command{xmake} is a cross-platform build utility based on Lua.
-Features:
-@itemize
-@item Built-in caching and parallel compilation,
-@item Concise Lua syntax,
-@item Custom rules, plugins and modules,
-@item Support for C++20 modules and compile_commands.json,
-@item Support for languages outside C/C++ (e.g. Go, Rust, Zig).
-@end itemize")
-   (license license:asl2.0)))

gnu/packages/c.scm

@@ -47,7 +47,6 @@
   #:use-module (guix gexp)
   #:use-module (guix utils)
   #:use-module (guix packages)
-  #:use-module (guix deprecation)
   #:use-module (guix download)
   #:use-module (guix git-download)
   #:use-module (guix build-system cmake)
@@ -55,6 +54,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix store)
   #:use-module (gnu packages)
   #:use-module (gnu packages bash)
@@ -62,7 +62,6 @@
   #:use-module (gnu packages bootstrap)
   #:use-module (gnu packages bison)
   #:use-module (gnu packages check)
-  #:use-module (gnu packages compiler-tools)
   #:use-module (gnu packages flex)
   #:use-module (gnu packages gawk)
   #:use-module (gnu packages gcc)
@@ -82,7 +81,6 @@
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages gettext)
   #:use-module (gnu packages pkg-config)
-  #:use-module (gnu packages sqlite)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages web)
   #:use-module (gnu packages xml))
@@ -1095,8 +1093,32 @@ portability.")
     (license (list license:bsd-2        ;all files except...
                    license:bsd-3))))    ;...the unidef.1 manual page
 
-(define-deprecated/public-alias byacc
-  (@ (gnu packages compiler-tools) byacc))
+(define-public byacc
+  (package
+    (name "byacc")
+    (version "20240109")
+    (source (origin
+             (method url-fetch)
+             (uri (string-append
+                   "https://invisible-mirror.net/archives/byacc/byacc-"
+                   version ".tgz"))
+             (sha256
+              (base32
+               "0il4w1vwbglayakywyghiqhcjpg1yvv5ww2p8ylz32bi05wpg2gj"))
+             (snippet
+              #~(begin (delete-file "btyaccpar.c")
+                       (delete-file "yaccpar.c")))))
+    (native-inputs
+     (list gawk))
+    (build-system gnu-build-system)
+    (home-page "https://invisible-island.net/byacc/byacc.html")
+    (synopsis "Berkeley Yacc LALR parser generator")
+    (description
+     "Berkeley Yacc is an LALR(1) parser generator.  Yacc reads the grammar
+specification from a file and generates an LALR(1) parser for it.  The parsers
+consist of a set of LALR(1) parsing tables and a driver routine written in the
+C programming language.")
+    (license license:public-domain)))
 
 (define-public argparse
   (package
@@ -1305,6 +1327,25 @@ for the @acronym{AWS,Amazon Web Services} SDK.")
     (home-page "https://github.com/awslabs/aws-c-sdkutils")
     (license license:asl2.0)))
 
+(define-public pcl
+  (package
+    (name "pcl")
+    (version "1.12")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+              "http://www.xmailserver.org/pcl-" version ".tar.gz"))
+       (sha256
+        (base32
+         "06ly65rq4iyj2p4704i215c8y4rgspwl8sxfaifmf4ahfr30bcz7"))))
+    (build-system gnu-build-system)
+    (home-page "http://www.xmailserver.org/libpcl.html")
+    (synopsis "Portable Coroutine Library")
+    (description "The @acronym{PCL, Portable Coroutine Library} implements the
+low level functionality for coroutines.")
+    (license license:gpl2+)))
+
 (define-public aws-c-http
   (package
     (name "aws-c-http")
@@ -1478,48 +1519,6 @@ Telemetry Transport (MQTT) publish-subscribe messaging protocol.")
     (home-page "https://microsoft.github.io/mimalloc/")
     (license license:expat)))
 
-(define-public mps
-  (package
-    (name "mps")
-    (version "1.118.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/Ravenbrook/mps")
-             (commit (string-append "release-" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "078iv3fsz0dnfwb7g63apkvcksczbqfxrxm73k80jwnwca6pgafy"))))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'patch-cflags
-            ;; The recursive make call in the test suite doesn't pass CFLAGS
-            ;; down properly so we need to do it ourselves
-            (lambda _
-              (substitute* "Makefile.in"
-                (("CFLAGS=\"(.*)\"" _ flags)
-                 (string-append "CFLAGS=\"" flags " $(CFLAGS)\""))))))
-      #:parallel-build? #f ;Parallel build fails
-      #:test-target "test"
-      #:make-flags
-      #~(list "CFLAGS=-Wno-error=dangling-pointer -Wno-maybe-uninitialized"
-              ;; These flags are needed for the recursive make calls in testing
-              (string-append "CC=" #$(cc-for-target)) "-j" "1")))
-    (inputs (list sqlite))
-    (home-page "http://www.ravenbrook.com/project/mps")
-    (synopsis "Memory pool system")
-    (description
-     "This package provides a cross-platform memory management system.  It
-permits the flexible combination of memory management techniques, supporting
-manual and automatic memory management, in-line allocation, finalization,
-weakness, and multiple concurrent co-operating incremental generational
-garbage collections.  It also includes a library of memory pool classes
-implementing specialized memory management policies.")
-    (license license:bsd-2)))
 ;;; The package is named orangeduck-mpc to differentiate it from GNU mpc.
 (define-public orangeduck-mpc
   ;; The last release lacks an 'install' target.

gnu/packages/calendar.scm

@@ -45,6 +45,7 @@
   #:use-module (guix build-system go)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system pyproject)
+  #:use-module ((guix build-system python) #:select (pypi-uri))
   #:use-module (gnu packages admin)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)

gnu/packages/cdrom.scm

@@ -337,7 +337,7 @@ reconstruction capability.")
 (define-public cdrdao
   (package
     (name "cdrdao")
-    (version "1.2.6")
+    (version "1.2.5")
     (source
      (origin
        (method git-fetch)
@@ -347,18 +347,30 @@ reconstruction capability.")
               (string-append "rel_" (string-replace-substring version "." "_")))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0hb8dfb88zk01yk5nfl8m5hsg4x2scb2899pxb717zywznr8jijw"))))
-    (build-system glib-or-gtk-build-system)
+        (base32 "1hh1lm4wr1vhsq2brczn94h88h3bppvjidj9cfqkl20jhaj38968"))))
+    (build-system gnu-build-system)
     (arguments
-     (list
-      #:configure-flags
-      #~(list
-         ;; Use the native SCSI interface.
-         "--without-scglib")))
+     '(#:configure-flags
+       (list
+        ;; GCDMaster depends on obsolete libgnomeuimm, see
+        ;; <https://github.com/cdrdao/cdrdao/issues/3>.
+        "--without-gcdmaster"
+        ;; Use the native SCSI interface.
+        "--without-scglib")
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'bootstrap 'fix-configure.ac
+           (lambda _
+             ;; Remove references to missing macros.
+             (substitute* "configure.ac"
+              (("^AM_GCONF_SOURCE_2.*") "")
+              ;; This was introduced in autoconf-2.70, but is described
+              ;; as usually not needed in the autoconf documentation.
+              (("^AC_CHECK_INCLUDES_DEFAULT") "")))))))
     (native-inputs
-     (list autoconf-2.72 automake `(,glib "bin") pkg-config))
+     (list autoconf automake pkg-config))
     (inputs
-     (list ao gtkmm-3 lame libmad libsigc++-2 libvorbis))
+     (list ao lame libmad libvorbis))
     (home-page "https://cdrdao.sourceforge.net")
     (synopsis "Read and write CDs in disk-at-once mode")
     (description "cdrdao records audio or data CDs in disk-at-once (DAO) mode,

gnu/packages/check.scm

@@ -131,6 +131,7 @@
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system trivial)
   #:use-module (ice-9 match)
   #:use-module (srfi srfi-1))
@@ -1881,6 +1882,7 @@ http server.")
     (arguments (list #:tests? #false)) ;no tests included
     (native-inputs
      (list python-pytest
+           python-pytest-cov
            python-setuptools
            python-wheel
            python-xmlschema))
@@ -1913,6 +1915,42 @@ XML output")
 decorators from external files.")
     (license license:expat)))
 
+(define-public python-pytest-random-order
+  (package
+    (name "python-pytest-random-order")
+    (version "1.1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "pytest-random-order" version))
+       (sha256
+        (base32 "104hww3b86jchk41kjhyycr541pd2dfgqkww6lx5y70z9z9xfwj4"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      ;; AttributeError: module 'py' has no attribute 'code'.
+      #~(list "-k" (string-append "not test_it_works_with_actual_tests"
+                                  " and not test_failed_first"
+                                  " and not test_doctests"))))
+    (native-inputs
+     (list python-pytest-xdist
+           python-setuptools
+           python-py
+           python-wheel))
+    (propagated-inputs
+     (list python-pytest))
+    (home-page "https://github.com/jbasko/pytest-random-order")
+    (synopsis "Pytest plugin to randomize the order of tests")
+    (description "@code{pytest-random-order} is a Pytest plugin that
+randomizes the order of tests.  This can be useful to detect a test that
+passes just because it happens to run after an unrelated test that leaves the
+system in a favourable state.  The plugin allows user to control the level of
+randomness they want to introduce and to disable reordering on subsets of
+tests.  Tests can be rerun in a specific order by passing a seed value
+reported in a previous test run.")
+    (license license:expat)))
+
 (define-public python-pytest-runner
   (package
     (name "python-pytest-runner")
@@ -2695,11 +2733,7 @@ failures and errors instantly.")
                      "test_is_not_identity"
                      "test_resolves_builtin_types[object]"
                      "test_resolves_forwardrefs_to_builtin_types[object]"
-                     "test_timezone_lookup[tzinfo]"
-                     ;; hypothesis.errors.FailedHealthCheck: Input generation is slow
-                     #$@(if (target-riscv64?)
-                            '("test_can_run_with_no_db")
-                            '()))
+                     "test_timezone_lookup[tzinfo]")
                " and not "))
       #:phases
       #~(modify-phases %standard-phases
@@ -2922,8 +2956,12 @@ mypy plugins.")
                            "and not upstream_url"))))
     (native-inputs
      (list python-pytest
+           python-pytest-black
            python-pytest-checkdocs
+           python-pytest-cov
            python-pytest-enabler
+           python-pytest-flake8
+           python-pytest-mypy
            python-setuptools
            python-wheel))
     (propagated-inputs
@@ -3030,28 +3068,21 @@ possible to write plugins to add your own checks.")
 (define-public behave
   (package
     (name "behave")
-    ;; 1.3.3 (2025-09-04), the latest changes provide support for Python
-    ;; 3.12+; move back to git tag when released.
-    (properties '((commit . "43d0a93240c0b25b0cbf59bdc196b74fb8a2353e")
-                  (revision . "0")))
-    (version (git-version "1.3.3"
-                          (assoc-ref properties 'revision)
-                          (assoc-ref properties 'commit)))
+    (version "1.3.3")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
               (url "https://github.com/behave/behave")
-              (commit (assoc-ref properties 'commit))))
+              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "05671jf7scpgqr8chzgs9bxidvf12nlkqqiqxa5qwmykqfvc8nk4"))))
+        (base32 "1fxj51kailsdakqi7qbw700k258n7r3lv75mgxs45ld5xh2jfyxh"))))
     (build-system pyproject-build-system)
-    ;; tests: 1638 passed, 3 skipped, 2 xfailed
     (native-inputs
-     (list python-chardet
-           python-freezegun
-           python-charset-normalizer
+     (list python-assertpy
+           python-chardet
+           python-mock
            python-path
            python-pyhamcrest
            python-pytest

gnu/packages/chemistry.scm

@@ -28,6 +28,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix download)
   #:use-module (guix gexp)
   #:use-module (guix git-download)

gnu/packages/chromium.scm

@@ -79,9 +79,12 @@
   '("base/third_party/cityhash" ;Expat
     "base/third_party/double_conversion" ;BSD-3
     "base/third_party/icu" ;Unicode, X11-style
+    "base/third_party/nspr" ;MPL-2.0
     "base/third_party/superfasthash" ;BSD-3
     "base/third_party/symbolize" ;BSD-3
     "base/third_party/xdg_user_dirs" ;Expat
+    "buildtools/third_party/libc++" ;BSD
+    "buildtools/third_party/libc++abi" ;BSD
     "net/third_party/mozilla_security_manager" ;MPL-1.1/GPL2+/LGPL2.1+
     "net/third_party/quiche" ;BSD-3
     "net/third_party/uri_template" ;ASL2.0
@@ -219,6 +222,7 @@
     "third_party/libaom/source/libaom/third_party/fastfeat" ;BSD-3
     "third_party/libaom/source/libaom/third_party/vector" ;Expat
     "third_party/libaom/source/libaom/third_party/x86inc" ;ISC
+    "third_party/libc++" ;Expat
     "third_party/libdrm" ; Expat
     "third_party/libgav1" ;ASL2.0
     "third_party/libjingle_xmpp" ;BSD-3
@@ -244,6 +248,8 @@
     "third_party/libzip" ;BSD-3
     "third_party/lit" ;BSD-3
     "third_party/lit/v3_0" ;BSD-3
+    "third_party/llvm-libc" ;ASL2.0
+    "third_party/llvm-libc/src/shared" ;ASL2.0
     "third_party/lottie" ;Expat
     "third_party/lss" ;BSD-3
     "third_party/lzma_sdk" ;public domain
@@ -895,9 +901,8 @@
                                        "libvk_swiftshader.so"
                                        "vk_swiftshader_icd.json"
 
-                                       ;; Chromium ships its own libGL and
-                                       ;; vulkan implementation called ANGLE.
-                                       "libvulkan.so.1"
+                                       ;; Chromium ships its own libGL
+                                       ;; implementation called ANGLE.
                                        "libEGL.so" "libGLESv2.so"))
                      (locales        (string-append lib "/locales"))
                      (resources      (string-append lib "/resources"))
@@ -916,7 +921,7 @@
                   (("@@MENUNAME") "Chromium")
                   (("@@PACKAGE") "chromium")
                   (("/usr/bin/@@usr_bin_symlink_name") exe)
-                  (("@@uri_scheme") "x-scheme-handler/chromium;")
+                  (("@@uri_scheme") "x-scheme-handler/chromium")
                   (("@@extra_desktop_entries") ""))
 
                 (mkdir-p man)

gnu/packages/cinnamon.scm

@@ -30,6 +30,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (gnu packages)
   #:use-module (gnu packages admin)
   #:use-module (gnu packages autotools)

gnu/packages/clojure.scm

@@ -377,14 +377,14 @@ designs.")
 (define-public clojure-tools
   (package
     (name "clojure-tools")
-    (version "1.12.4.1618")
+    (version "1.12.4.1582")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://download.clojure.org/install/clojure-tools-"
                            version
                            ".tar.gz"))
-       (sha256 (base32 "08fy3k248sbsrbgl0lq3q4d23vp4chdawy230ardx61sssk9sxhk"))
+       (sha256 (base32 "08gzfblnz0zhnk6pwr9vcm6y168psgrwmqww3wqk1v7j5gr68n7x"))
        ;; Remove AOT compiled JAR.  The other JAR only contains uncompiled
        ;; Clojure source code.
        (snippet
@@ -512,7 +512,7 @@ defining and using monads and useful monadic functions.")
 (define-public clojure-core-async
   (package
     (name "clojure-core-async")
-    (version "1.9.865")
+    (version "1.8.741")
     (home-page "https://github.com/clojure/core.async")
     (source (origin
               (method git-fetch)
@@ -522,7 +522,7 @@ defining and using monads and useful monadic functions.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "15pc2m58fscix85gsiwl9dlvw2x6alvc4qni46rry2sr00nfzd3r"))))
+                "1m6lir2xr119yxz483cz0rfw4k3a40qmmsiwl2y7kyxy65vab60z"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure")
@@ -546,7 +546,7 @@ work on Communicating Sequential Processes (CSP).")
 (define-public clojure-core-cache
   (package
     (name "clojure-core-cache")
-    (version "1.2.263")
+    (version "1.2.249")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -555,7 +555,7 @@ work on Communicating Sequential Processes (CSP).")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "19q81aki8wb120v6jfylwqgf965mwkhrpcsrs5zazjfjv8vq6glx"))))
+                "0hdwv5dsx49i12riz3frzshwkgw26ah43667lzga2n6zgpmrh8ii"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure")
@@ -598,7 +598,7 @@ It supports Clojure 1.5.1 and later as well as ClojureScript.")
 (define-public clojure-core-memoize
   (package
     (name "clojure-core-memoize")
-    (version "1.2.281")
+    (version "1.2.273")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -607,7 +607,7 @@ It supports Clojure 1.5.1 and later as well as ClojureScript.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0bnlqs7m69svhfadwy46wgc88j9ma9fhdk4586b4xxppamj6c5j4"))))
+                "009fj19y464an66pryygmqbnx2dqk5wkp40rbkbgkir0ax0k6j3y"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure")
@@ -734,7 +734,7 @@ maps also support conj/peek/pop operations.")
 (define-public clojure-data-xml
   (package
     (name "clojure-data-xml")
-    (version "0.2.0-alpha11")
+    (version "0.2.0-alpha10")
     (home-page "https://github.com/clojure/data.xml")
     (source (origin
               (method git-fetch)
@@ -744,7 +744,7 @@ maps also support conj/peek/pop operations.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0k7hq3s4zbk0ryhgycivl1dk22fzh60522a57az8ykmixhqjxwhg"))))
+                "0mnhgrh20p2wwmq8a4631dkpxbgbijwi6sfhw5v784hzkjkfgkh6"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure")
@@ -862,7 +862,7 @@ tree.
 (define-public clojure-tools-analyzer
   (package
     (name "clojure-tools-analyzer")
-    (version "1.2.2")
+    (version "1.2.1")
     (home-page "https://github.com/clojure/tools.analyzer")
     (source (origin
               (method git-fetch)
@@ -872,7 +872,7 @@ tree.
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "07cxphrmd6a3clnalrdqxlyin8l0lw0xhjy2rh9gaizxfv5c23jp"))))
+                "0apa3gc45rmdj19plbvglpj6i9dadkgvvidj5mcnkzi9y3h0nr27"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure")
@@ -938,7 +938,7 @@ tools.analyzer, providing additional JVM-specific passes.")
 (define-public clojure-tools-cli
   (package
     (name "clojure-tools-cli")
-    (version "1.4.256")
+    (version "1.3.250")
     (home-page "https://github.com/clojure/tools.cli")
     (source (origin
               (method git-fetch)
@@ -947,7 +947,7 @@ tools.analyzer, providing additional JVM-specific passes.")
                     (commit (string-append "v" version))))
               (file-name (git-file-name name version))
               (sha256
-               (base32 "1kr1cpypzgzh8pkih5qamsaq8c96jfpcvmn9f330sic2shb53m55"))))
+               (base32 "1nyw33w83gd7xlbpma03p4jwcdcp38h8y99x2rqw4zcnw19gsz4p"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure/")
@@ -959,25 +959,29 @@ tools.analyzer, providing additional JVM-specific passes.")
 work with command-line arguments.")
     (license license:epl1.0)))
 
-(define-public clojure-tools-deps-edn
+(define-public clojure-tools-deps
   (package
-    (name "clojure-tools-deps-edn")
-    (version "0.9.22")
-    (home-page "https://github.com/clojure/tools.deps.edn")
+    (name "clojure-tools-deps")
+    (version "0.28.1578")
+    (home-page "https://github.com/clojure/tools.deps")
     (source (origin
               (method git-fetch)
               (uri (git-reference
-                     (url home-page)
-                     (commit (string-append "v" version))))
+                    (url home-page)
+                    (commit (string-append "v" version))))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "082p6zpbb8vvdc9ncc0d66h3g7sax4pp0h4fymwiv0lakzyq3g9g"))))
+                "1w3f8cl81q4kln6iz74fnfzms4c4x279ivh1962pcg22q8l1w8d5"))))
     (build-system clojure-build-system)
     (arguments
      `(#:source-dirs '("src/main/clojure" "src/main/resources")
+       #:java-source-dirs '("src/main/java")
        #:test-dirs '("src/test/clojure")
        #:doc-dirs '()
+       ;; FIXME: Could not initialize class
+       ;; org.eclipse.aether.transport.http.SslSocketFactory
+       #:tests? #f
        #:phases
        (modify-phases %standard-phases
          (add-before 'build 'reference-clojure-jar-input
@@ -988,42 +992,12 @@ work with command-line arguments.")
                 (string-append "org.clojure/clojure {:local/root \""
                                (assoc-ref inputs "clojure")
                                "/share/java/clojure.jar\"}"))))))))
-    (synopsis "Reader for @file{deps.edn}")
-    (description "This package provides support for reading and manipulating
-@file{deps.edn} files and data structures.  It can be used in scenarios where
-the @code{tools.deps} library is not needed for dep expansion.")
-    (license license:epl1.0)))
-
-(define-public clojure-tools-deps
-  (package
-    (name "clojure-tools-deps")
-    (version "0.29.1598")
-    (home-page "https://github.com/clojure/tools.deps")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url home-page)
-                    (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1qds0ri6y8s7419x3pzl9yhhr19qli3l52yg9a78w47h0w6dd1kv"))))
-    (build-system clojure-build-system)
-    (arguments
-     `(#:source-dirs '("src/main/clojure" "src/main/resources")
-       #:java-source-dirs '("src/main/java")
-       #:test-dirs '("src/test/clojure")
-       #:doc-dirs '()
-       ;; FIXME: Could not initialize class
-       ;; org.eclipse.aether.transport.http.SslSocketFactory
-       #:tests? #f))
     (propagated-inputs (list maven-3.8-core
                              maven-resolver-1.6-connector-basic
                              maven-resolver-1.6-transport-http
                              maven-resolver-1.6-transport-file
                              clojure-tools-gitlibs
                              clojure-tools-cli
-                             clojure-tools-deps-edn
                              clojure-data-xml
                              cognitect-aws-api))
     (synopsis "Clojure library supporting clojure-tools")
@@ -1201,7 +1175,7 @@ asynchronous support.")
 (define-public cognitect-aws-api
   (package
     (name "cognitect-aws-api")
-    (version "0.8.824")
+    (version "0.8.800")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1210,7 +1184,7 @@ asynchronous support.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0ivlcmsr7rvr7741k9wzniv2zxijida0b588nqngm5vrgna816yl"))
+                "17sxj3mvq4iasr0kchbx2anmrh25v8bvmpam4si704vksmnm28p3"))
               (modules '((guix build utils)))
               (snippet
                '(begin

gnu/packages/cmake.scm

@@ -47,6 +47,7 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system emacs)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module ((guix search-paths) #:select ($SSL_CERT_DIR $SSL_CERT_FILE))
   #:use-module (gnu packages)
   #:use-module (gnu packages backup)

gnu/packages/code.scm

@@ -1,8 +1,8 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2012-2013, 2015, 2018, 2020, 2021, 2023, 2025 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2013, 2015, 2018, 2020, 2021, 2023 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2013, 2015 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2015, 2018 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2016, 2017, 2018, 2019-2024 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2017, 2019-2024 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2017, 2018 Clément Lassieur <clement@lassieur.org>
 ;;; Copyright © 2017 Andy Wingo <wingo@igalia.com>
@@ -49,6 +49,7 @@
   #:use-module (guix git-download)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system cmake)
+  #:use-module ((guix build-system python) #:select (pypi-uri))
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system trivial)
   #:use-module (guix build-system go)
@@ -865,46 +866,6 @@ Objective@tie{}C, D, Java, Pawn, and Vala).  Features:
 the C, C++, C++/CLI, Objective‑C, C#, and Java programming languages.")
     (license license:lgpl3+)))
 
-(define-public idutils
-  (package
-    (name "idutils")
-    (version "4.6")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "mirror://gnu/idutils/idutils-" version ".tar.xz"))
-       (sha256
-        (base32 "1hmai3422iaqnp34kkzxdnywl7n7pvlxp11vrw66ybxn9wxg90c1"))
-       (modules '((guix build utils)))
-       (snippet
-        '(begin
-           (substitute* (find-files "lib" "\\.c$")
-             (("#if defined _IO_ftrylockfile")
-              "#if defined _IO_EOF_SEEN"))
-           (substitute* "lib/stdio-impl.h"
-             (("^/\\* BSD stdio derived implementations")
-              (string-append
-               "#if !defined _IO_IN_BACKUP && defined _IO_EOF_SEEN" "\n"
-               "# define _IO_IN_BACKUP 0x100\n" "#endif\n\n"
-               "/* BSD stdio derived implementations")))
-
-           ;; 'gets' is deprecated in glibc 2.33 and its declaration is
-           ;; no longer visible by default from <stdio.h>.
-           (substitute* "lib/stdio.in.h"
-             (("_GL_WARN_ON_USE \\(gets.*")
-              ""))))))
-    (build-system gnu-build-system)
-    (native-inputs (list emacs-minimal))
-    (home-page "https://www.gnu.org/software/idutils/")
-    (synopsis "Identifier database utilities")
-    (description
-     "The GNU idutils package includes tools to create an index of textual
-tokens used in a list of file names and then to query that index.  Thus, it
-allows the user to, for example, find all the uses of a particular function
-in a large programming project.  In addition to handling textual tokens, it
-can also handle numeric constants and the contents of character strings.")
-    (license license:gpl3+)))
-
 (define-public indent
   ;; XXX: Not released anymore, but some patches fix CVEs.
   (let ((commit "1737c929cbe2ec8a181107df9742894a44c57f71")

gnu/packages/compiler-tools.scm

@@ -1,114 +0,0 @@
-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2021 Foo Chuan Wei <chuanwei.foo@hotmail.com>
-;;; Copyright © 2022 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2022 Tobias Geerinckx-Rice <me@tobias.gr>
-;;; Copyright © 2024-2025 Efraim Flashner <efraim@flashner.co.il>
-;;; Copyright © 2025 Anderson Torres <anderson.torres.8519@gmail.com>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
-
-(define-module (gnu packages compiler-tools)
-  #:use-module (gnu packages autotools)
-  #:use-module (gnu packages gawk)
-  #:use-module (guix build-system gnu)
-  #:use-module (guix build-system trivial)
-  #:use-module (guix download)
-  #:use-module (guix gexp)
-  #:use-module (guix git-download)
-  #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix packages))
-
-(define-public byacc
-  (package
-    (name "byacc")
-    (version "20240109")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append
-             "https://invisible-mirror.net/archives/byacc/byacc-"
-             version ".tgz"))
-       (sha256
-        (base32
-         "0il4w1vwbglayakywyghiqhcjpg1yvv5ww2p8ylz32bi05wpg2gj"))
-       (snippet
-        #~(begin
-            ;; Remove machine-generated files
-            (for-each delete-file
-                      (list "configure"
-                            "btyaccpar.c"
-                            "yaccpar.c"))))))
-    (build-system gnu-build-system)
-    (native-inputs
-     (list autoconf
-           automake
-           gawk))
-    (home-page "https://invisible-island.net/byacc/byacc.html")
-    (synopsis "Berkeley Yacc LALR parser generator")
-    (description
-     "Berkeley Yacc is an LALR(1) parser generator.  Yacc reads the grammar
-specification from a file and generates an LALR(1) parser for it.  The parsers
-consist of a set of LALR(1) parsing tables and a driver routine written in the
-C programming language.")
-    (license license:public-domain)))
-
-(define-public oyacc
-  (package
-    (name "oyacc")
-    (version "6.6")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/ibara/yacc")
-              (commit (string-append name "-" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1a2nyg2nnh1las40klnp037sapaaph86kjx258cpqcwnk4cv3rnx"))))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:test-target "test"
-      #:make-flags
-      #~(list (string-append "BINDIR=" #$output "/bin")
-              (string-append "MANDIR=" #$output "/share/man/man1"))))
-    (home-page "https://github.com/ibara/yacc")
-    (synopsis "Portable YACC from OpenBSD")
-    (description
-     "@command{oyacc} is a portable version of the OpenBSD's
-@acronym{yacc, Yet Another Compiler Compiler} program, with no dependencies
-besides libc.")
-    (license license:bsd-2)))
-
-(define-public oyacc-as-yacc-wrapper
-  (package/inherit oyacc
-    (name "oyacc-as-yacc-wrapper")
-    (build-system trivial-build-system)
-    (arguments
-     (list
-      #:builder
-      (with-imported-modules '((guix build utils))
-        #~(begin
-            (use-modules (guix build utils))
-            (let ((bindir (string-append #$output "/bin"))
-                  (oyacc (string-append #$(this-package-input "oyacc")
-                                        "/bin/oyacc")))
-              (mkdir-p bindir)
-              (symlink oyacc (string-append bindir "/yacc")))))))
-    (inputs (list oyacc))
-    (description
-     "This package provides the @command{yacc} command, implemented as a
-symbolic link to the @command{oyacc} command from the same-named package.")))

gnu/packages/containers.scm

@@ -50,7 +50,6 @@
   #:use-module (gnu packages bash)
   #:use-module (gnu packages check)
   #:use-module (gnu packages compression)
-  #:use-module (gnu packages docker)
   #:use-module (gnu packages glib)
   #:use-module (gnu packages gcc)
   #:use-module (gnu packages gettext)
@@ -71,7 +70,6 @@
   #:use-module (gnu packages networking)
   #:use-module (gnu packages package-management)
   #:use-module (gnu packages pkg-config)
-  #:use-module (gnu packages prometheus)
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages python-build)
   #:use-module (gnu packages python-check)
@@ -123,365 +121,6 @@
      "This package provides a Go library to read and manipulate checkpoint
 archives as created by Podman, CRI-O and containerd.")
     (license license:asl2.0)))
-
-(define-public go-github-com-containerd-containerd-v2
-  (package
-    (name "go-github-com-containerd-containerd-v2")
-    (version "2.2.3")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/containerd/containerd")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0wxy5np689571s6lw77mx63nw75fx85w5svi0jplksmqzmjqp8wd"))
-       (snippet
-        #~(begin (use-modules (guix build utils))
-         (delete-file-recursively "vendor")
-            ;; Submodules with their own go.mod files and packaged separately:
-            ;;
-            ;; - github.com/containerd/containerd/api
-            (delete-file-recursively "api")))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:skip-build? #t
-      #:import-path "github.com/containerd/containerd/v2"
-      #:test-subdirs
-      #~(list "cmd/protoc-gen-go-fieldpath/..."
-              "core/containers/..."
-              "core/content/..."
-              "core/diff"
-              "core/diff/apply"
-              "core/events/..."
-              "core/images/..."
-              "core/introspection/..."
-              "core/leases/..."
-              "core/metrics/..."
-              "core/remotes/..."
-              "core/sandbox/..."
-              "core/streaming/..."
-              "core/transfer"
-              "core/transfer/archive/..."
-              "core/transfer/image/..."
-              "core/transfer/local/..."
-              "core/transfer/plugins/..."
-              "core/transfer/streaming/..."
-              "core/unpack/..."
-              "internal/cleanup/..."
-              "internal/erofsutils/..."
-              "internal/eventq/..."
-              "internal/failpoint/..."
-              "internal/fsverity/..."
-              "internal/kmutex/..."
-              "internal/lazyregexp/..."
-              "internal/pprof/..."
-              "internal/randutil/..."
-              "internal/registrar/..."
-              "internal/tomlext/..."
-              "internal/truncindex/..."
-              "internal/userns/..."
-              "internal/wintls/..."
-              "pkg/apparmor/..."
-              "pkg/archive/..."
-              "pkg/atomicfile/..."
-              "pkg/blockio/..."
-              "pkg/cap/..."
-              "pkg/cio..."
-              "pkg/deprecation/..."
-              "pkg/dialer/..."
-              "pkg/display/..."
-              "pkg/epoch/..."
-              "pkg/fifosync/..."
-              "pkg/filters/..."
-              "pkg/gc/..."
-              "pkg/httpdbg/..."
-
-              ;; TODO: Check why these submodule fail to build.
-              ;; "client/..."
-              ;; "cmd/containerd-shim-runc-v2/..."
-              ;; "cmd/containerd-stress/..."
-              ;; "cmd/containerd/..."
-              ;; "cmd/ctr/..."
-              ;; "cmd/gen-manpages/..."
-              ;; "contrib/..."
-              ;; "core/diff/proxy"
-              ;; "core/metadata/..."
-              ;; "core/mount/..."
-              ;; "core/runtime/..."
-              ;; "core/snapshots/..."
-              ;; "core/transfer/proxy/..."
-              ;; "core/transfer/registry/..."
-              ;; "integration/..."
-              ;; "internal/cri/..."
-              ;; "internal/nri/..."
-              ;; "pkg/cdi/..."
-              #;"plugins/...")
-      #:test-flags
-      #~(list "-skip" (string-join
-                      ;; panic: cannot statfs cgroup root [recovered]
-                      (list "TestValidateConfig"
-                            ;; io_test.go:40: failed to start binary process:
-                            ;; fork/exec /bin/echo: no such file or directory
-                            "TestNewBinaryIO"
-                            ;; expected success: got executable file not found in $PATH
-                            "TestExecutorWithArgs"
-                            "TestSetEnv"
-                            "TestStdIOPipes"
-                            ;; panic: cannot statfs cgroup root
-                            "TestContainerCapabilities"
-                            "TestContainerSpecTty"
-                            "TestContainerSpecReadonlyRootfs"
-                            "TestContainerSpecWithExtraMounts"
-                            "TestContainerAndSandboxPrivileged"
-                            "TestPrivilegedBindMount"
-                            "TestCgroupNamespace"
-                            "TestPidNamespace/node_namespace_mode"
-                            ;; failed to apply b: invalid argument
-                            "TestDiffTar/IgnoreSockets"
-                            "TestBinDirVerifyImage/max_verifiers_=_-1,_with_timeout"
-                            "TestContainerSpecDefaultPath"
-                            ;; Error: Not equal:
-                            ;;        expected: 1000
-                            ;;        actual  : 123
-                            "TestSetPositiveOomScoreAdjustment")
-                       "|"))))
-    (native-inputs
-     (list go-github-com-stretchr-testify))
-    (propagated-inputs
-     (list go-dario-cat-mergo
-           go-github-com-adalogics-go-fuzz-headers
-           go-github-com-checkpoint-restore-checkpointctl
-           go-github-com-checkpoint-restore-go-criu-v7
-           go-github-com-containerd-btrfs-v2
-           go-github-com-containerd-cgroups-v3
-           go-github-com-containerd-console
-           go-github-com-containerd-containerd-api
-           go-github-com-containerd-continuity
-           go-github-com-containerd-errdefs
-           go-github-com-containerd-errdefs-pkg
-           go-github-com-containerd-fifo
-           go-github-com-containerd-go-cni
-           go-github-com-containerd-go-runc
-           go-github-com-containerd-imgcrypt-v2
-           go-github-com-containerd-log
-           go-github-com-containerd-nri
-           go-github-com-containerd-otelttrpc
-           go-github-com-containerd-platforms
-           go-github-com-containerd-plugin
-           go-github-com-containerd-ttrpc
-           go-github-com-containerd-typeurl-v2
-           go-github-com-containerd-zfs-v2
-           go-github-com-containernetworking-cni
-           go-github-com-containernetworking-plugins
-           go-github-com-coreos-go-systemd-v22
-           go-github-com-davecgh-go-spew
-           go-github-com-distribution-reference
-           go-github-com-docker-go-events
-           go-github-com-docker-go-metrics
-           go-github-com-docker-go-units
-           go-github-com-emicklei-go-restful-v3
-           go-github-com-fsnotify-fsnotify
-           go-github-com-google-certtostore
-           go-github-com-google-go-cmp
-           go-github-com-google-uuid
-           go-github-com-grpc-ecosystem-go-grpc-middleware-providers-prometheus
-           go-github-com-intel-goresctrl
-           go-github-com-klauspost-compress
-           go-github-com-mdlayher-vsock
-           ;;go-github-com-microsoft-go-winio ;Windows only
-           ;;go-github-com-microsoft-hcsshim ;Windows only
-           go-github-com-moby-locker
-           go-github-com-moby-sys-mountinfo
-           go-github-com-moby-sys-sequential
-           go-github-com-moby-sys-signal
-           go-github-com-moby-sys-symlink
-           go-github-com-moby-sys-user
-           go-github-com-moby-sys-userns
-           go-github-com-opencontainers-go-digest
-           go-github-com-opencontainers-image-spec
-           go-github-com-opencontainers-runtime-spec
-           go-github-com-opencontainers-runtime-tools
-           go-github-com-opencontainers-selinux
-           go-github-com-pelletier-go-toml-v2
-           go-github-com-prometheus-client-golang
-           go-github-com-sirupsen-logrus
-           go-github-com-tchap-go-patricia-v2
-           go-github-com-urfave-cli-v2
-           go-github-com-vishvananda-netlink
-           go-github-com-vishvananda-netns
-           go-go-etcd-io-bbolt
-           go-go-opentelemetry-io-contrib-instrumentation-google-golang-org-grpc-otelgrpc
-           go-go-opentelemetry-io-contrib-instrumentation-net-http-otelhttp
-           go-go-opentelemetry-io-otel
-           go-go-opentelemetry-io-otel-exporters-otlp-otlptrace
-           go-go-opentelemetry-io-otel-exporters-otlp-otlptrace-otlptracegrpc
-           go-go-opentelemetry-io-otel-exporters-otlp-otlptrace-otlptracehttp
-           go-go-opentelemetry-io-otel-sdk
-           go-go-opentelemetry-io-otel-trace
-           go-go-uber-org-goleak
-           go-golang-org-x-mod
-           go-golang-org-x-sync
-           go-golang-org-x-sys
-           go-golang-org-x-time
-           go-google-golang-org-genproto-googleapis-rpc
-           go-google-golang-org-grpc
-           go-google-golang-org-protobuf
-           go-gopkg-in-inf-v0
-           go-k8s-io-apimachinery
-           go-k8s-io-client-go
-           go-k8s-io-cri-api
-           go-k8s-io-klog-v2
-           go-tags-cncf-io-container-device-interface))
-    (home-page "https://containerd.io/")
-    (synopsis "Container runtime support daemon")
-    (description
-     "Containerd is a container runtime with an emphasis on simplicity,
-robustness, and portability.  It is available as a daemon, which can manage
-the complete container lifecycle of its host system: image transfer and
-storage, container execution and supervision, low-level storage and network
-attachments, etc.")
-    (license license:asl2.0)))
-
-(define-public go-github-com-containers-gvisor-tap-vsock
-  (package
-    (name "go-github-com-containers-gvisor-tap-vsock")
-    (version "0.8.8")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/containers/gvisor-tap-vsock")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1xz710dmy58gngd0qizjw8g9nkraksqald8vzhwc5h36dqkc8nrf"))
-       (modules '((guix build utils)))
-       (snippet
-        #~(begin
-            (delete-file-recursively "vendor")
-            ;; Submodules with their own go.mod files and packaged separately:
-            ;;
-            ;; - github.com/containers/gvisor-tap-vsock/tools
-            (delete-file-recursively "tools")))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:skip-build? #t
-      #:import-path "github.com/containers/gvisor-tap-vsock"
-      #:unpack-path "github.com/containers/gvisor-tap-vsock"
-      #:build-flags
-      #~(list (string-append "-ldflags="
-                             "-X github.com/containers/gvisor-tap-vsock"
-                             "/pkg/types.gitVersion=" #$version))
-      #:test-flags
-      #~(list "-skip"
-              (string-join
-               ;; Received unexpected error:
-               ;; listen unix /tmp/guix-.../test.sock: bind: invalid argument
-               (list "TestNotificationSender_Success"
-                     ;; Requires network
-                     "TestSuite"
-                     "TestDNS")
-               "|"))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'prune-tests
-            (lambda* (#:key unpack-path #:allow-other-keys)
-              (with-directory-excursion (string-append "src/" unpack-path)
-                ;; Requires working DNS.
-                (substitute* "pkg/services/dns/dns_test.go"
-                  (("Should pass DNS requests to default system DNS.*" all)
-                   (string-append all "\n" "ginkgo.Skip(\"No network.\");"))
-                  (("\"redhat.com\",")
-                   "\"localhost\",")
-                  (("\"52.200.142.250\"")
-                   "\"127.0.0.1\""))))))))
-    (native-inputs
-     (list go-github-com-stretchr-testify
-           go-github-com-foxcpp-go-mockdns))
-    (propagated-inputs
-     (list go-github-com-apparentlymart-go-cidr
-           go-github-com-containers-winquit
-           go-github-com-coreos-stream-metadata-go
-           go-github-com-dustin-go-humanize
-           go-github-com-google-gopacket
-           go-github-com-inetaf-tcpproxy
-           go-github-com-insomniacslk-dhcp
-           ;; go-github-com-linuxkit-virtsock  ;Windows only
-           go-github-com-mdlayher-vsock
-           ;; go-github-com-microsoft-go-winio ;Windows only
-           go-github-com-miekg-dns
-           go-github-com-onsi-ginkgo
-           go-github-com-onsi-gomega
-           go-github-com-opencontainers-go-digest
-           go-github-com-sirupsen-logrus
-           go-github-com-songgao-packets
-           go-github-com-songgao-water
-           go-github-com-vishvananda-netlink
-           go-golang-org-x-crypto
-           go-golang-org-x-mod
-           go-golang-org-x-sync
-           go-golang-org-x-sys
-           go-gopkg-in-yaml-v3
-           go-gvisor-dev-gvisor))
-    (home-page "https://github.com/containers/gvisor-tap-vsock")
-    (synopsis "Network stack for virtualization based on gVisor")
-    (description "This package provides a replacement for @code{libslirp} and
-@code{VPNKit}, written in pure Go.  It is based on the network stack of gVisor
-and brings a configurable DNS server and dynamic port forwarding.
-
-It can be used with QEMU, Hyperkit, Hyper-V and User-Mode Linux.
-
-The binary is called @command{gvproxy}.")
-    (license license:asl2.0)))
-
-(define-public go-github-com-rootless-containers-rootlesskit-v3
-  (package
-    (name "go-github-com-rootless-containers-rootlesskit-v3")
-    (version "3.0.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/rootless-containers/rootlesskit")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0giw1whjpm64h8f1iamgym246rr3wl01w7zgw4lygrj7dqk3clmb"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:skip-build? #t
-      #:import-path "github.com/rootless-containers/rootlesskit/v3"))
-    (propagated-inputs
-     (list go-github-com-containernetworking-plugins
-           go-github-com-containers-gvisor-tap-vsock
-           go-github-com-gofrs-flock
-           go-github-com-google-uuid
-           go-github-com-gorilla-mux
-           go-github-com-insomniacslk-dhcp
-           go-github-com-masterminds-semver-v3
-           go-github-com-moby-sys-mountinfo
-           go-github-com-moby-vpnkit
-           go-github-com-sirupsen-logrus
-           go-github-com-songgao-water
-           go-github-com-urfave-cli-v2
-           go-golang-org-x-sync
-           go-golang-org-x-sys
-           go-gotest-tools-v3))
-    (home-page "https://github.com/rootless-containers/rootlesskit")
-    (synopsis "Linux-native fakeroot using user namespaces in Golang")
-    (description
-     "@code{RootlessKit} is a Linux-native implementation of \"fake root\" using
-@url{http://man7.org/linux/man-pages/man7/user_namespaces.7.html,(code
-user_namespaces(7))}.  It is used to run containers engines as an
-unprivileged user, known as \"Rootless mode\".")
-    (license license:asl2.0)))
-
-
 
 ;;;
 ;;; Executables:
@@ -511,7 +150,7 @@ as created by Podman, CRI-O and containerd.")))
 (define-public crun
   (package
     (name "crun")
-    (version "1.27.1")
+    (version "1.26")
     (source
      (origin
        (method url-fetch)
@@ -521,7 +160,7 @@ as created by Podman, CRI-O and containerd.")))
              "/crun-" version ".tar.gz"))
        (sha256
         (base32
-         "1w782s95f3xvw3fb66l2ciqkqsg4bk7n9ph31jmvn669ap272ymy"))))
+         "1hdwk5dpsz9danxiyfli07b7sqid6hr34qmhs5qjl2dcc00is89j"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -906,7 +545,7 @@ Layer-4 sockets.")
 (define-public cni-plugins
   (package
     (name "cni-plugins")
-    (version "1.9.1")
+    (version "1.9.0")
     (source
      (origin
        (method git-fetch)
@@ -915,7 +554,7 @@ Layer-4 sockets.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "12z6w2jk6xgfiwdxys7skpkxldz1cgaa7scgfcr90lsghay59s6w"))
+        (base32 "0l3jgbizq0yaxld07hsdbh6ix2w6i789101ddk0ldnsmr93jg6ni"))
        (snippet
         #~(begin (use-modules (guix build utils))
                  (delete-file-recursively "vendor")))))
@@ -956,33 +595,92 @@ configure network interfaces in Linux containers.")
     (license license:asl2.0)))
 
 (define-public gvisor-tap-vsock
-  (package/inherit go-github-com-containers-gvisor-tap-vsock
+  (package
     (name "gvisor-tap-vsock")
+    (version "0.8.8")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/containers/gvisor-tap-vsock")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1xz710dmy58gngd0qizjw8g9nkraksqald8vzhwc5h36dqkc8nrf"))
+       (modules '((guix build utils)))
+       (snippet
+        #~(begin
+            (delete-file-recursively "vendor")
+            ;; Submodules with their own go.mod files and packaged separately:
+            ;;
+            ;; - github.com/containers/gvisor-tap-vsock/tools
+            (delete-file-recursively "tools")))))
+    (build-system go-build-system)
     (arguments
-     (substitute-keyword-arguments arguments
-       ((#:install-source? _ #t) #f)
-       ((#:skip-build? _ #t) #f)
-       ((#:tests? _ #t) #f)
-       ((#:phases _ '%standard-phases)
-        #~(modify-phases %standard-phases
-            ;; Build binary outputs are taken from project's Makefile.
-            (replace 'build
-              (lambda arguments
-                (for-each
-                 (lambda (cmd)
-                   (apply (assoc-ref %standard-phases 'build)
-                          `(,@arguments #:import-path ,cmd)))
-                 (list "github.com/containers/gvisor-tap-vsock/cmd/gvproxy"
-                       "github.com/containers/gvisor-tap-vsock/cmd/qemu-wrapper"
-                       "github.com/containers/gvisor-tap-vsock/cmd/vm"))))
-            (add-after 'install 'fix-bin-name
-              (lambda _
-                (rename-file (string-append #$output "/bin/vm")
-                             (string-append #$output "/bin/gvforwarder"))))))))
+     (list
+      #:install-source? #f
+      #:import-path "github.com/containers/gvisor-tap-vsock/cmd/gvproxy"
+      #:unpack-path "github.com/containers/gvisor-tap-vsock"
+      #:build-flags
+      #~(list (string-append "-ldflags="
+                             "-X github.com/containers/gvisor-tap-vsock"
+                             "/pkg/types.gitVersion=" #$version))
+      #:test-flags
+      ;; serve UDP error: *net.OpError read udp 127.0.0.1:5354: use of closed
+      ;; network connection
+      #~(list "-skip" "TestSuite")
+      #:test-subdirs
+      #~(list "../../...")       ;test the whole library
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'prune-tests
+            (lambda* (#:key unpack-path #:allow-other-keys)
+              (with-directory-excursion (string-append "src/" unpack-path)
+                ;; Requires working DNS.
+                (substitute* "pkg/services/dns/dns_test.go"
+                  (("Should pass DNS requests to default system DNS.*" all)
+                   (string-append all "\n" "ginkgo.Skip(\"No network.\");"))
+                  (("\"redhat.com\",")
+                   "\"localhost\",")
+                  (("\"52.200.142.250\"")
+                   "\"127.0.0.1\""))))))))
     (native-inputs
-     (package-propagated-inputs go-github-com-containers-gvisor-tap-vsock))
-    (propagated-inputs '())
-    (inputs '())))
+     (list go-github-com-apparentlymart-go-cidr
+           go-github-com-containers-winquit
+           go-github-com-coreos-stream-metadata-go
+           go-github-com-dustin-go-humanize
+           go-github-com-foxcpp-go-mockdns
+           go-github-com-google-gopacket
+           go-github-com-inetaf-tcpproxy
+           go-github-com-insomniacslk-dhcp
+           ;; go-github-com-linuxkit-virtsock  ;Windows only
+           go-github-com-mdlayher-vsock
+           ;; go-github-com-microsoft-go-winio ;Windows only
+           go-github-com-miekg-dns
+           go-github-com-onsi-ginkgo
+           go-github-com-onsi-gomega
+           go-github-com-opencontainers-go-digest
+           go-github-com-sirupsen-logrus
+           go-github-com-songgao-packets
+           go-github-com-songgao-water
+           go-github-com-stretchr-testify
+           go-github-com-vishvananda-netlink
+           go-golang-org-x-crypto
+           go-golang-org-x-mod
+           go-golang-org-x-sync
+           go-golang-org-x-sys
+           go-gopkg-in-yaml-v3
+           go-gvisor-dev-gvisor))
+    (home-page "https://github.com/containers/gvisor-tap-vsock")
+    (synopsis "Network stack for virtualization based on gVisor")
+    (description "This package provides a replacement for @code{libslirp} and
+@code{VPNKit}, written in pure Go.  It is based on the network stack of gVisor
+and brings a configurable DNS server and dynamic port forwarding.
+
+It can be used with QEMU, Hyperkit, Hyper-V and User-Mode Linux.
+
+The binary is called @command{gvproxy}.")
+    (license license:asl2.0)))
 
 (define-public catatonit
   (package
@@ -1187,7 +885,7 @@ being rootless and not requiring any daemon to be running.")
 (define-public buildah
   (package
     (name "buildah")
-    (version "1.43.1")
+    (version "1.43.0")
     (source
      (origin
        (method git-fetch)
@@ -1195,7 +893,7 @@ being rootless and not requiring any daemon to be running.")
              (url "https://github.com/containers/buildah")
              (commit (string-append "v" version))))
        (sha256
-        (base32 "00x4ja5n49jmkmiv54mmkihks9pnjnna7s7py57in6pc9g85xj2y"))
+        (base32 "0pwdd0mxhxy530c2sbsz0rnnb1jyl41rvnqn9ywfgb6lz5f4ja2a"))
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (arguments

gnu/packages/cpp.scm

@@ -28,7 +28,7 @@
 ;;; Copyright © 2022-2024 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2022 muradm <mail@muradm.net>
 ;;; Copyright © 2022 Attila Lendvai <attila@lendvai.name>
-;;; Copyright © 2022, 2026 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2022 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2022-2025 David Elsing <david.elsing@posteo.net>
 ;;; Copyright © 2022-2024 Zheng Junjie <873216071@qq.com>
 ;;; Copyright © 2022-2024, 2026 Maxim Cournoyer <maxim@guixotic.coop>
@@ -79,6 +79,7 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system scons)
   #:use-module (guix modules)
@@ -133,7 +134,6 @@
   #:use-module (gnu packages sdl)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages tex)
-  #:use-module (gnu packages texinfo)
   #:use-module (gnu packages web)
   #:use-module (gnu packages webkit)
   #:use-module (gnu packages xdisorg)
@@ -936,85 +936,6 @@ inspired by the @url{https://github.com/gruns/icecream, Python library} of the
 same name.")
     (license license:expat)))
 
-(define-public tinyformat
-  (package
-    (name "tinyformat")
-    (version "2.3.0")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/c42f/tinyformat")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "0j8bxrg7i4rn98iqpfh03krshgcbwh8hq8nm0p3sfdqpira3vi3y"))))
-    (build-system cmake-build-system)
-    (arguments
-     (list #:phases
-           #~(modify-phases %standard-phases
-               (replace 'install
-                 (lambda _
-                   (install-file "../source/tinyformat.h"
-                                 (string-append #$output "/include")))))))
-    (home-page "https://github.com/c42f/tinyformat")
-    (synopsis "Minimal, type-safe printf replacement library for C++")
-    (description "@code{tinyformat} is a type-safe @code{printf} replacement
-library in a single C++ header file.  Design goals include:
-
-@itemize
-@item Type-safety and extensibility for user defined types
-@item C99 @code{printf} compatibility, to the extent possible using
-@code{std::ostream}
-@item POSIX extension for positional arguments
-@item Simplicity and minimalism; a single header file to include and
-distribute with your projects
-@item Augment rather than replace the standard stream formatting mechanism
-@item C++98 support, with optional C++11 niceties
-@end itemize")
-    (license license:boost1.0)))
-
-(define-public span
-  (let ((commit "836dc6a0efd9849cb194e88e4aa2387436bb079b")
-        (revision "0"))
-    (package
-      (name "span")
-      (version (git-version "0.1.0" revision commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                       (url "https://github.com/tcbrindle/span")
-                       (commit commit)))
-                (file-name (git-file-name name version))
-                (sha256
-                 (base32
-                  "1v3x1mj4if8jrr7cmrcbhv8n8ygla0liqb0dic6g6ji7px2pr6jf"))
-                (snippet
-                 #~(delete-file "test/catch.hpp"))))
-      (build-system cmake-build-system)
-      (arguments
-       (list #:phases
-             #~(modify-phases %standard-phases
-                 (add-after 'unpack 'patch-catch2
-                   (lambda _
-                     ;; Use catch2 from Guix.
-                     (substitute* (find-files "test" "\\.cpp$")
-                       (("#include \"catch.hpp\"")
-                        "#include <catch2/catch.hpp>"))))
-                 (replace 'install
-                   (lambda _
-                     (install-file "../source/include/tcb/span.hpp"
-                                   (string-append #$output "/include")))))))
-      (native-inputs
-       (list catch2))
-      (home-page "https://github.com/tcbrindle/span")
-      (synopsis "C++20's @code{std::span} shim for older compilers")
-      (description "This package provides a single-header implementation of
-C++20's @code{std::span}, conforming to the C++20 committee draft.  It is
-compatible with C++11, but will use newer language features if they are
-available.")
-      (license license:boost1.0))))
-
 (define-public google-highway
   (package
     (name "google-highway")
@@ -1751,38 +1672,6 @@ maintained anymore.")
 concurrent queue for C++11.")
     (license license:bsd-2)))
 
-(define-public ringbuffer
-  (package
-    (name "ringbuffer")
-    (version "0.9.0")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/JohannesLorenz/ringbuffer")
-                    (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1c57hj6zyvcjpcbwrq8c1hj5brk1bnh69ayd88ny1p0gx031sjpk"))))
-    (build-system cmake-build-system)
-    (arguments
-     (list #:configure-flags
-           #~(list "-DCMAKE_CXX_FLAGS=-Wno-error=array-bounds"
-                   (string-append "-DINSTALL_LIB_DIR=" #$output "/lib"))
-           #:phases
-           #~(modify-phases %standard-phases
-               (add-after 'install 'install-export-header
-                 (lambda _
-                   (install-file "src/lib/ringbuffer_export.h"
-                                 (string-append #$output
-                                                "/include/ringbuffer")))))))
-    (home-page "https://github.com/JohannesLorenz/ringbuffer")
-    (synopsis "Lock-free multi-reader ringbuffer")
-    (description
-     "@code{ringbuffer} is a library containing a ringbuffer.  It is lock-free
-(using atomics only), and allows multiple readers, but only one writer.")
-    (license license:gpl3+)))
-
 (define-public spscqueue
   (package
     (name "spscqueue")
@@ -2016,7 +1905,8 @@ using the string similarity calculations from FuzzyWuzzy.")
           (add-after 'unpack 'fix-pytest-config
             (lambda _
               (substitute* "pyproject.toml"
-                (("\"pytest-cov\", ") "")))))))
+                ((" \"pytest-cov\", ") "")
+                ((" --cov-fail-under=90 --cov=cpplint") "")))))))
     (native-inputs
      (list python-pytest
            python-pytest-timeout
@@ -3778,39 +3668,6 @@ computing Fast Fourier transformations.  It supports multidimensional arrays,
 different floating point sizes and complex transformations.")
       (license license:bsd-3))))
 
-(define-public libbinio
-  ;; The latest tagged version does not support CMake build.  This commit has
-  ;; builds with CMake and has updated CMake version support.
-  (let ((commit "e88dad086265e179ab6aef7f479e19f3917c7a98")
-        (revision "0"))
-    (package
-      (name "libbinio")
-      (version (git-version "1.5" revision commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                      (url "https://github.com/adplug/libbinio")
-                      (commit commit)))
-                (file-name (git-file-name name version))
-                (sha256
-                 (base32
-                  "0rb33jl6gpxb88zymzl996m43b7r6wyw4lq0ib3626kna3baqnha"))))
-      (native-inputs
-       (list autoconf automake libtool texinfo))
-      (build-system cmake-build-system)
-      (arguments
-       (list #:tests? #f ;no tests
-             #:configure-flags
-             #~(list "-DBUILD_SHARED_LIBS=ON")))
-      (home-page "http://adplug.github.io/libbinio/")
-      (synopsis "Binary I/O stream class library")
-      (description
-       "This binary I/O stream class library presents a platform-independent
-way to access binary data streams in C++.  The library is hardware independent
-in the form that it transparently converts between the different forms of
-machine-internal binary data representation.")
-      (license license:lgpl2.1+))))
-
 (define-public priocpp
   ;; Latest release is from 2022-08-14.
   (let ((commit "ea15402adcd0d9191dc29ca6f7e4dd0bff67b9b5")
@@ -4637,47 +4494,6 @@ meta data function.")
     ;; or the CECILL-C license:
     (license (list license:lgpl3 license:cecill-c))))
 
-(define-public tcbrindle-span
-  (let ((commit "836dc6a0efd9849cb194e88e4aa2387436bb079b")
-        (revision "0"))
-    (package
-      (name "tcbrindle-span")
-      (version (git-version "0" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-               (url "https://github.com/tcbrindle/span")
-               (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "1v3x1mj4if8jrr7cmrcbhv8n8ygla0liqb0dic6g6ji7px2pr6jf"))
-         (modules '((guix build utils)))
-         ;; Unbundle catch.
-         (snippet
-          '(with-directory-excursion "test"
-             (delete-file "catch.hpp")
-             (substitute* (find-files "." "\\.cpp$")
-               (("\"catch\\.hpp\"") "<catch.hpp>"))))))
-      (build-system cmake-build-system)
-      (native-inputs (list catch-framework))
-      (arguments
-       (list
-        #:phases
-        #~(modify-phases %standard-phases
-            (replace 'install
-              (lambda _
-                (mkdir-p (string-append #$output))
-                (copy-recursively "../source/include"
-                                  (string-append #$output "/include")))))))
-      (home-page "https://github.com/tcbrindle/span")
-      (synopsis "Implementation of C++20's @code{std::span} for older compilers")
-      (description
-       "This package provides a single-header implementation of C++20's
-@code{std::span}, conforming to the C++20 committee draft.  It is compatible
-with C++11, but will use newer language features if they are available.")
-    (license license:boost1.0))))
-
 (define-public tsl-hopscotch-map
   (package
     (name "tsl-hopscotch-map")

gnu/packages/cran.scm

@@ -9232,7 +9232,7 @@ similar rank-based tests for equal probability distributions due to Neuhauser
                (("^PKG_LIBS=.*")
                 (string-append "PKG_LIBS="
                                (assoc-ref inputs "libnode")
-                               "/lib/libnode.so.127\n")))
+                               "/lib/libnode.so.137\n")))
              (setenv "INCLUDE_DIR"
                      (string-append
                       (assoc-ref inputs "libnode")

gnu/packages/crypto.scm

@@ -105,6 +105,7 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system perl)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix utils)
   #:use-module (srfi srfi-1)

gnu/packages/cups.scm

@@ -62,6 +62,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix download)
   #:use-module (guix git-download)

gnu/packages/cybersecurity.scm

@@ -31,6 +31,7 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (gnu packages databases)
   #:use-module (gnu packages check)
   #:use-module (gnu packages cpp)
@@ -111,7 +112,7 @@ Refresh}in-DRAM mitigations effectively and as such can trigger bit flips.")
 (define-public gallia
   (package
     (name "gallia")
-    (version "2.1.1")
+    (version "2.0.2")
     (source
      (origin
        (method git-fetch)
@@ -120,7 +121,7 @@ Refresh}in-DRAM mitigations effectively and as such can trigger bit flips.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "04xzh5fi18wrkjs7sqwlv344jf54njvnly042rhxq3x5jrvpvkdw"))))
+        (base32 "1yvjpwpqq6r6glfm4qzb8j91d2gsfy4lvygd9z9pg2j6jvcq6f6s"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -132,16 +133,25 @@ Refresh}in-DRAM mitigations effectively and as such can trigger bit flips.")
       #:test-flags #~(list "tests/pytest")))
     (native-inputs
      (list python-poetry-core
+           python-pygit2
            python-pytest
            python-pytest-asyncio))
     (inputs
-     (list python-aiosqlite
+     (list python-aiofiles
+           python-aiosqlite
            python-argcomplete
            python-boltons
+           python-can
+           python-construct
+           python-exitcode
+           python-httpx
+           python-more-itertools
+           python-msgspec
            python-platformdirs
+           python-psutil
            python-pydantic
+           python-pygit2
            python-tabulate
-           python-wcwidth
            python-zstandard))
     (home-page "https://github.com/Fraunhofer-AISEC/gallia")
     (synopsis "Extendable Pentesting Framework")

gnu/packages/databases.scm

@@ -205,6 +205,7 @@
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system ruby)
   #:use-module (guix build-system cmake)
@@ -1060,31 +1061,6 @@ auto-completion and syntax highlighting.")
 \"special\", or \"backslash commands\") on PostgreSQL.")
     (license license:bsd-3)))
 
-(define-public python-sqlite-anyio
-  (package
-    (name "python-sqlite-anyio")
-    (version "0.2.8")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/davidbrochart/sqlite-anyio")
-             (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "075fnrrwzn9xc2clkcsyfycjc870khcwnpdg4g726qwl44pfzy2a"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:build-backend "poetry.core.masonry.api")) ;XXX: python-uv-build is required
-    (propagated-inputs (list python-anyio python-typing-extensions))
-    (native-inputs (list python-poetry-core python-pytest))
-    (home-page "https://github.com/davidbrochart/sqlite-anyio")
-    (synopsis "Asynchronous client for SQLite using AnyIO")
-    (description "This package provides an asynchronous client for SQLite
-using @code{AnyIO}.")
-    (license license:expat)))
-
 (define-public python-sqlitedict
   (package
     (name "python-sqlitedict")
@@ -1190,70 +1166,73 @@ auto-completion and syntax highlighting.")
     (name "mysql")
     (version "5.7.33")
     (source (origin
-              (method url-fetch)
-              (uri (list (string-append
+             (method url-fetch)
+             (uri (list (string-append
                           "https://dev.mysql.com/get/Downloads/MySQL-"
                           (version-major+minor version) "/"
                           name "-" version ".tar.gz")
-                         (string-append
+                        (string-append
                           "https://downloads.mysql.com/archives/get/file/"
                           name "-" version ".tar.gz")))
-              (sha256
-               (base32
-                "1bb343mf7n0qg2qz497gxjsqprygrjz1q1pbz76hgqxnsy08sfxd"))))
+             (sha256
+              (base32
+               "1bb343mf7n0qg2qz497gxjsqprygrjz1q1pbz76hgqxnsy08sfxd"))))
     (build-system cmake-build-system)
     (arguments
-     (list
-      #:configure-flags
-      #~(list "-DBUILD_CONFIG=mysql_release"
-              "-DWITH_SSL=system"
-              "-DWITH_ZLIB=system"
-              "-DDEFAULT_CHARSET=utf8"
-              "-DDEFAULT_COLLATION=utf8_general_ci"
-              "-DMYSQL_DATADIR=/var/lib/mysql"
-              "-DMYSQL_UNIX_ADDR=/run/mysqld/mysqld.sock"
-              "-DINSTALL_INFODIR=share/mysql/docs"
-              "-DINSTALL_MANDIR=share/man"
-              "-DINSTALL_PLUGINDIR=lib/mysql/plugin"
-              "-DINSTALL_SCRIPTDIR=bin"
-              "-DINSTALL_INCLUDEDIR=include/mysql"
-              "-DINSTALL_DOCREADMEDIR=share/mysql/docs"
-              "-DINSTALL_SUPPORTFILESDIR=share/mysql"
-              "-DINSTALL_MYSQLSHAREDIR=share/mysql"
-              "-DINSTALL_DOCDIR=share/mysql/docs"
-              "-DINSTALL_SHAREDIR=share/mysql"
-              ;; Get rid of test data.
-              "-DINSTALL_MYSQLTESTDIR="
-              "-DINSTALL_SQLBENCHDIR=")
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'install 'remove-extra-binaries
-            (lambda _
-              ;; Remove the 3 *_embedded files, which weigh in at
-              ;; 14 MiB each.
-              (for-each delete-file
-                        (find-files (string-append #$output "/bin")
-                                    "_embedded$"))))
-          (add-after 'install 'wrap-mysql_helpers
-            (lambda* (#:key inputs outputs #:allow-other-keys)
-              (let ((bin (string-append #$output "/bin"))
-                    (gawk (search-input-file inputs "bin/gawk"))
-                    (coreutils (search-input-file inputs "bin/ls"))
-                    (grep (search-input-file inputs "bin/grep"))
-                    (ps (search-input-file inputs "bin/ps"))
-                    (sed (search-input-file inputs "bin/sed")))
-                (wrap-program (search-input-file outputs "bin/mysql_config")
-                  `("PATH" suffix
-                    ,(list (dirname gawk)
-                           (dirname coreutils)
-                           (dirname sed))))
-                (wrap-program (search-input-file outputs "bin/mysqld_safe")
-                  `("PATH" suffix
-                    ,(list (dirname gawk)
-                           (dirname coreutils)
-                           (dirname grep)
-                           (dirname ps)
-                           (dirname sed))))))))))
+     `(#:configure-flags
+       '("-DBUILD_CONFIG=mysql_release"
+         "-DWITH_SSL=system"
+         "-DWITH_ZLIB=system"
+         "-DDEFAULT_CHARSET=utf8"
+         "-DDEFAULT_COLLATION=utf8_general_ci"
+         "-DMYSQL_DATADIR=/var/lib/mysql"
+         "-DMYSQL_UNIX_ADDR=/run/mysqld/mysqld.sock"
+         "-DINSTALL_INFODIR=share/mysql/docs"
+         "-DINSTALL_MANDIR=share/man"
+         "-DINSTALL_PLUGINDIR=lib/mysql/plugin"
+         "-DINSTALL_SCRIPTDIR=bin"
+         "-DINSTALL_INCLUDEDIR=include/mysql"
+         "-DINSTALL_DOCREADMEDIR=share/mysql/docs"
+         "-DINSTALL_SUPPORTFILESDIR=share/mysql"
+         "-DINSTALL_MYSQLSHAREDIR=share/mysql"
+         "-DINSTALL_DOCDIR=share/mysql/docs"
+         "-DINSTALL_SHAREDIR=share/mysql"
+         ;; Get rid of test data.
+         "-DINSTALL_MYSQLTESTDIR="
+         "-DINSTALL_SQLBENCHDIR=")
+       #:phases (modify-phases %standard-phases
+                  (add-after
+                   'install 'remove-extra-binaries
+                   (lambda* (#:key outputs #:allow-other-keys)
+                     (let ((out (assoc-ref outputs "out")))
+                       ;; Remove the 3 *_embedded files, which weigh in at
+                       ;; 14 MiB each.
+                       (for-each delete-file
+                                 (find-files (string-append out "/bin")
+                                             "_embedded$"))
+                       #t)))
+                  (add-after
+                   'install 'wrap-mysql_helpers
+                   (lambda* (#:key inputs outputs #:allow-other-keys)
+                     (let* ((out (assoc-ref outputs "out"))
+                            (bin (string-append out "/bin"))
+                            (awk (assoc-ref inputs "gawk"))
+                            (coreutils (assoc-ref inputs "coreutils"))
+                            (grep (assoc-ref inputs "grep"))
+                            (ps (assoc-ref inputs "procps"))
+                            (sed (assoc-ref inputs "sed")))
+                       (wrap-program (string-append bin "/mysql_config")
+                         `("PATH" ":" suffix
+                           (,(string-append awk "/bin")
+                            ,(string-append coreutils "/bin")
+                            ,(string-append sed "/bin"))))
+                       (wrap-program (string-append bin "/mysqld_safe")
+                         `("PATH" ":" suffix
+                           (,(string-append awk "/bin")
+                            ,(string-append coreutils "/bin")
+                            ,(string-append grep "/bin")
+                            ,(string-append ps "/bin")
+                            ,(string-append sed "/bin"))))))))))
     (native-inputs
      (list bison perl pkg-config))
     (inputs
@@ -1267,7 +1246,7 @@ auto-completion and syntax highlighting.")
            ncurses
            openssl-1.1
            procps
-           rpcsvc-proto                 ; rpcgen
+           rpcsvc-proto ; rpcgen
            sed
            zlib))
     (home-page "https://www.mysql.com/")
@@ -1278,98 +1257,6 @@ management system that supports the standardized Structured Query
 Language.")
     (license license:gpl2)))
 
-(define-public mysql-connector-python
-  (package
-    (name "mysql-connector-python")
-    (version "8.3.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/mysql/mysql-connector-python")
-              (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "18jvpnnwmfrn961rvqmsygp7dw3spf3swhxhal4hhj5hqddckj5f"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      ;; tests: 1371 passed
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'compatibility
-            (lambda _
-              (substitute* "src/mysql_capi.c"
-                (("res = mysql_options\\(&self->session, MYSQL_OPT_LOAD_DATA_LOCAL_DIR.*")
-                 "res = 0;")
-                (("mysql_options\\(&self->session, MYSQL_OPT_LOAD_DATA_LOCAL_DIR.*")
-                 "")
-                (("mysql_options\\(&self->session, MYSQL_OPT_TLS_CIPHERSUITES.*")
-                 "")
-                ;; The C API does not have mysql_bind_param, so we produce an
-                ;; error here.
-                (("status = mysql_bind_param.*") "status = 1;")
-                (("#include \"mysql_capi_conversion\\.h\"" all)
-                 (string-append all "\n" "#include <stdbool.h>")))))
-          (add-after 'unpack 'chdir
-            (lambda _
-              (chdir "mysql-connector-python")))
-          (add-before 'build 'prepare-build
-            (lambda _
-              (setenv "MYSQL_CAPI" #$(this-package-input "mysql"))))
-          (replace 'check
-            (lambda* (#:key tests? #:allow-other-keys)
-              (when tests?
-                ;; Some of these tests might be failing due to the build
-                ;; container's restrictions, others are due to the version
-                ;; mismatch.
-                (substitute* "tests/cext/test_cext_api.py"
-                  (("def test_change_user") "def _do_not_test_change_user")
-                  (("def test_get_character_set_info")
-                   "def _do_not_test_get_character_set_info"))
-                (substitute* "tests/test_bugs.py"
-                  (("def test_change_user") "def _do_not_test_change_user")
-                  (("def test_lost_connection") "def _do_not_test_lost_connection")
-                  (("def test_kill_query") "def _do_not_test_kill_query")
-                  ;; These all fail because of expired certificates.
-                  (("def test_cext_verify_server_certificate")
-                   "def _do_not_test_cext_verify_server_certificate")
-                  (("def test_pure_verify_server_certificate")
-                   "def _do_not_test_pure_verify_server_certificate")
-                  (("def test_verify_server_name_cext_cnx")
-                   "def _do_not_test_verify_server_name_cext_cnx")
-                  (("def test_verify_server_name_pure_cnx")
-                   "def _do_not_test_verify_server_name_pure_cnx"))
-                (substitute* '("tests/test_connection.py"
-                               "tests/test_aio_connection.py")
-                  (("def test_allow_local_infile_in_path")
-                   "def _do_not_test_allow_local_infile_in_path")
-                  ;; This fails because of expired certificates.
-                  (("def test_connect_with_unix_socket")
-                   "def _do_not_test_connect_with_unix_socket"))
-                (substitute* "tests/test_constants.py"
-                  (("def test_deprecated")
-                   "def _do_not_test_deprecated"))
-                (mkdir-p "/tmp/datadir")
-                (invoke "python3" "unittests.py"
-                        "--verbosity=3"
-                        (string-append "--with-mysql=" #$(this-package-input "mysql"))
-                        "--keep"
-                        "--mysql-topdir=/tmp/datadir"
-                        "--unix-socket=/tmp/datadir")))))))
-    (propagated-inputs (list python-protobuf))
-    (inputs (list mysql protobuf-3.20 openssl-1.1 zlib))
-    (native-inputs (list python-setuptools))
-    (home-page "https://dev.mysql.com/doc/connector-python/en/index.html")
-    (synopsis "MySQL driver written in Python")
-    (description "MySQL Connector/Python enables Python programs to access
-MySQL databases, using an API that is compliant with the Python Database API
-Specification v2.0 (PEP 249).")
-    (license license:gpl2)))
-
-(define-deprecated-package python-mysql-connector-python
-  mysql-connector-python)
-
 (define-public mariadb
   (package
     (name "mariadb")
@@ -4829,24 +4716,33 @@ PickleShare.")
 (define-public python-apsw
   (package
     (name "python-apsw")
-    (version "3.50.4.0")
+    (version "3.46.0.0")
+    ;; The compressed release has fetching functionality disabled.
     (source
      (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/rogerbinns/apsw")
-              (commit version)))
-       (file-name (git-file-name name version))
+       (method url-fetch)
+       (uri (string-append
+             "https://github.com/rogerbinns/apsw/releases/download/"
+             version "/apsw-" version ".zip"))
        (sha256
-        (base32 "0r9awjgpl9cmqz5xd4zbqrpiv0rv5c36a18jkqnsfky6n6sgr424"))))
+        (base32
+         "10yfbasi4mq63g0svyl1h49ylwn9znjylq78id16dzxzk9q9ipdx"))))
     (build-system pyproject-build-system)
-    (arguments
-     (list #:test-backend #~'custom
-           #:test-flags #~(list "-m" "apsw.tests")))
     (native-inputs
-     (list python-setuptools))
-    (inputs
-     (list sqlite-next))         ;SQLite 3.45.1 required.
+     (list unzip python-setuptools python-wheel))
+    (inputs (list sqlite-next))         ;SQLite 3.45.1 required.
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'build 'build-extensions
+            (lambda _
+              (invoke "python" "setup.py" "build" "--enable-all-extensions"
+                      "--enable=load_extension")))
+          (add-after 'build 'build-test-helper
+            (lambda _
+              (invoke "gcc" "-fPIC" "-shared" "-o" "./testextension.sqlext"
+                      "-I." "-Isqlite3" "src/testextension.c"))))))
     (home-page "https://github.com/rogerbinns/apsw/")
     (synopsis "Another Python SQLite Wrapper")
     (description
@@ -5823,6 +5719,7 @@ __version_tuple__ = version_tuple = (~a)~%" version version-tuple))))))
            pkg-config
            python-cython
            python-pytest
+           python-pytest-runner
            python-setuptools-scm
            python-setuptools))
     (outputs '("out"))
@@ -6419,7 +6316,7 @@ mechanism of @code{dogpile}.")
 (define-public datasette
   (package
     (name "datasette")
-    (version "1.0a26")
+    (version "1.0a19")
     (source
      (origin
        (method git-fetch)
@@ -6428,20 +6325,23 @@ mechanism of @code{dogpile}.")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1ra0yfrz9w3jx7ix3dmcsg0g8hjxkz37586g7ijmqshxpzczxfm7"))))
+        (base32 "0wb73iksrc5vg2lnq3q4vr7yhlzxwr711jfmjdndd0s77996zsfh"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; tests: 1720 passed, 9 skipped, 8 xfailed, 13 xpassed, 3 warnings, 120
-      ;; subtests passed
       #:test-flags
-      #~(list "--numprocesses" (number->string (min 8 (parallel-job-count)))
-              "--ignore=tests/test_black.py")
+      ;; See https://github.com/simonw/datasette/issues/2048
+      #~(list "-k" (string-append
+                    ;; These contain two unexpected extra items.
+                    "not test_searchable"
+                    " and not test_searchmode")
+              "--ignore=tests/test_black.py"
+              "-n" (number->string (parallel-job-count)))
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'relax-requirements
             (lambda _
-              (substitute* "pyproject.toml"
+              (substitute* "setup.py"
                 (("\"pip\",") "")))))))
     (propagated-inputs
      (list python-aiofiles
@@ -6456,6 +6356,7 @@ mechanism of @code{dogpile}.")
            python-janus
            python-jinja2
            python-mergedeep
+           python-pint
            python-pluggy
            python-pyyaml
            python-sqlite-utils
@@ -6464,9 +6365,9 @@ mechanism of @code{dogpile}.")
      (list nss-certs-for-test
            python-beautifulsoup4
            python-cogapp
-           python-multipart-form-data-conformance
            python-pytest
-           python-pytest-asyncio
+           python-pytest-asyncio-0.26
+           python-pytest-runner
            python-pytest-timeout
            python-pytest-xdist
            python-setuptools

gnu/packages/datalog.scm

@@ -1,113 +0,0 @@
-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2026 Arun Isaac <arunisaac@systemreboot.net>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
-
-(define-module (gnu packages datalog)
-  #:use-module (gnu packages bison)
-  #:use-module (gnu packages compression)
-  #:use-module (gnu packages cpp)
-  #:use-module (gnu packages flex)
-  #:use-module (gnu packages libffi)
-  #:use-module (gnu packages ncurses)
-  #:use-module (gnu packages python)
-  #:use-module (gnu packages sqlite)
-  #:use-module (guix build-system cmake)
-  #:use-module (guix gexp)
-  #:use-module (guix git-download)
-  #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix packages))
-
-(define-public souffle
-  (package
-    (name "souffle")
-    (version "2.5")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/souffle-lang/souffle")
-                     (commit version)))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1lrw69g02b17vxxz4g7cj8hbmc39wlzl80vl5fwy40a6b9pxwrsj"))
-              (snippet
-               #~(begin
-                   ;; Delete bundled dependencies. souffle also uses a forked
-                   ;; and modified version of json11. We cannot unbundle
-                   ;; that.
-                   (for-each delete-file
-                             (list "licenses/TCBRINDLE SPAN.txt"
-                                   "licenses/TINYFORMAT.txt"
-                                   "src/include/souffle/utility/span.h"
-                                   "src/include/souffle/utility/tinyformat.h"))))))
-    (build-system cmake-build-system)
-    (arguments
-     (list #:configure-flags #~(list "-DSOUFFLE_GIT=OFF"
-                                     (string-append "-DPACKAGE_VERSION="
-                                                    #$version))
-           ;; We disable these tests since they fail with gcc 14. This issue
-           ;; has been reported upstream:
-           ;; https://github.com/souffle-lang/souffle/issues/2576
-           #:test-exclude (string-join
-                           (list "syntactic/cpp_keywords_run_souffle"
-                                 "syntactic/cpp_keywords_c_run_souffle"
-                                 "syntactic/cpp_keywords_compare_std_outputs"
-                                 "syntactic/cpp_keywords_compare_csv"
-                                 "syntactic/cpp_keywords_c_compare_std_outputs"
-                                 "syntactic/cpp_keywords_c_compare_csv")
-                           "|")
-           #:phases
-           #~(modify-phases %standard-phases
-               (add-after 'unpack 'replace-bundled-libraries
-                 (lambda _
-                   ;; Patch souffle to use tinyformat from Guix.
-                   (substitute* (find-files "src" "\\.(cpp|h)$")
-                     (("#include \"souffle/utility/tinyformat.h\"")
-                      "#include <tinyformat.h>"))
-                   ;; Replace span.h with a header that uses span from Guix
-                   ;; and provides the same namespace.
-                   (call-with-output-file "src/include/souffle/utility/span.h"
-                     (lambda (port)
-                       (display "#pragma once
-#include <span.hpp>
-namespace souffle {
-  using tcb::span;
-}
-"
-                                port))))))))
-    (inputs
-     (list libffi
-           ncurses
-           python
-           span
-           sqlite
-           zlib))
-    (native-inputs
-     (list bison
-           flex
-           tinyformat))
-    (home-page "https://souffle-lang.github.io/")
-    (synopsis "Datalog variant")
-    (description "Soufflé is a variant of Datalog for tool designers crafting
-analyses in Horn clauses.  Soufflé synthesizes a native parallel C++ program
-from a logic specification.  The Soufflé language is similar to Datalog (but
-has terms known as records), and is frequently used as a domain-specific
-language for analysis problems.")
-    (license (list license:upl          ; main license
-                   ;; src/include/souffle/profile/htmlJsChartistPlugin.h
-                   ;; src/include/souffle/utility/json11.h
-                   license:expat))))

gnu/packages/dav.scm

@@ -27,6 +27,7 @@
 (define-module (gnu packages dav)
   #:use-module (guix build-system cargo)
   #:use-module (guix build-system gnu)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix download)
   #:use-module (guix gexp)
@@ -142,6 +143,9 @@ CardDAV server with a local folder or file.")
     (build-system pyproject-build-system)
     (native-inputs
      (list python-pytest
+           python-pytest-cov
+           python-pytest-flake8
+           python-pytest-isort
            python-setuptools
            python-waitress
            python-wheel))
@@ -240,6 +244,7 @@ efficient syncing
      (list python-aioresponses
            python-pytest
            python-pytest-asyncio
+           python-pytest-cov
            python-pytest-httpserver
            python-setuptools
            python-setuptools-scm

gnu/packages/debug.scm

@@ -263,7 +263,7 @@ simple way to add custom protocol messages.")
 (define-public c-vise
   (package
     (name "c-vise")
-    (version "2.8.0")
+    (version "2.4.0")
     (source
      (origin
        (method git-fetch)
@@ -271,53 +271,37 @@ simple way to add custom protocol messages.")
              (url "https://github.com/marxin/cvise")
              (commit (string-append "v" version))))
        (sha256
-        (base32 "1ynhm1d56r25apgvv0wqbdrhjbwigkwrgw92g2czz4nfx77rjxz2"))
+        (base32 "1i2z5q2pcwh1gpdqc24x1a2q5vzwhblzzq021nzwf304di7m18vl"))
        (file-name (git-file-name name version))))
     (build-system cmake-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'fix-linkage
-            (lambda _
-              (substitute* "clang_delta/CMakeLists.txt"
-                (("\\$\\{LLVM_LINK_LLVM_DYLIB\\}")
-                 "True")
-                (("  LLVM")
-                 "  LLVMSupport"))))
-          (add-before 'build 'hardcode-paths
-            (lambda _
-              (substitute* "cvise.py"
-                (("/bin/bash")
-                 (which "bash"))
-                (("(.*)# Special case for clang-format" all blank)
-                 (format #f "~a# Special case for unifdef
-~aprograms['unifdef'] = ~s
-~a"
-                         blank blank (which "unifdef") all)))))
-          (add-after 'install 'wrap
-            (lambda _
-              (let ((python-path (getenv "GUIX_PYTHONPATH")))
-                (wrap-program (string-append #$output "/bin/cvise")
-                  `("PYTHONPATH" ":" prefix
-                    (,(string-join
-                       (filter (lambda (cand)
-                                 (not (string-contains cand "pytest")))
-                               (string-split python-path #\:))
-                       ":"))))))))))
     (native-inputs
-     (list flex
-           python-pytest
-           python-pytest-flake8))
+     (list flex python-pytest python-pytest-flake8))
     (inputs
-     (list bash-minimal
-           clang
-           llvm
-           unifdef
-           python
-           python-pebble
-           python-psutil
-           python-chardet))
+     (list bash-minimal clang llvm unifdef
+           python python-pebble python-psutil python-chardet))
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'fix-linkage
+           (lambda _
+            (substitute* "clang_delta/CMakeLists.txt"
+              (("\\$\\{LLVM_LINK_LLVM_DYLIB\\}") "True")
+              (("  LLVM") "  LLVMSupport"))))
+         (add-before 'build 'hardcode-paths
+           (lambda _
+            (substitute* "cvise.py"
+              (("/bin/bash") (which "bash"))
+              (("(.*)# Special case for clang-format" & >)
+               (string-append > "# Special case for unifdef\n"
+                              > "programs['unifdef'] = '" (which "unifdef") "'\n"
+                              &)))))
+         (add-after 'install 'wrap
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let ((out (assoc-ref outputs "out"))
+                   (python-path (getenv "GUIX_PYTHONPATH")))
+               (wrap-program (string-append out "/bin/cvise")
+                 `("PYTHONPATH" ":" prefix (,python-path)))
+               #t))))))
     (home-page "https://github.com/marxin/cvise")
     (synopsis "Reducer for interesting code")
     (description
@@ -994,27 +978,26 @@ engineering.")
 (define-public seer-gdb
   (package
     (name "seer-gdb")
-    (version "2.7")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/epasveer/seer")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1szfqybqr5z982vian4f0hpsagiqapzys3axwibyjyg5whjswva1"))))
+    (version "1.16")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                     (url "https://github.com/epasveer/seer.git")
+                     (commit (string-append "v" version))))
+              (file-name (string-append name "-" version "-checkout"))
+              (sha256
+               (base32
+                "0jdvyg2jab1pvf36pvkyrfsg2wyy8zp1qx0v2ksclgrnr1hja6k6"))))
     (build-system qt-build-system)
     (arguments
-     (list
-      #:tests? #f                       ;tests are strangely manual
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'chdir
-            (lambda _
-              (chdir "src"))))))
+     `(#:tests? #f ; Those are strangely manual
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'chdir
+           (lambda _
+             (chdir "src"))))))
     (inputs
-     (list gdb qtbase qtcharts qtsvg qtwayland))
+     (list qtbase-5 qtcharts-5 qtwayland-5))
     (synopsis "GUI frontend for GDB")
     (description "This package provides a frontend to GDB, the GNU debugger.")
     (home-page "https://github.com/epasveer/seer")
@@ -1054,7 +1037,7 @@ to aid in debugging.")
 (define-public delve
   (package
     (name "delve")
-    (version "1.26.3")
+    (version "1.25.2")
     (source
      (origin
        (method git-fetch)
@@ -1064,7 +1047,7 @@ to aid in debugging.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "0mf363l7md4193cgrpb6hkhmsgnlnrx44q1bzw3zq0bmjrcg3fj7"))
+         "1b6vp6m4vjx4wfs1djhpizvz40s563jwld9lgjq82svaiilrmlqa"))
        (snippet
         #~(begin (use-modules (guix build utils))
                  (delete-file-recursively "vendor")))))
@@ -1082,7 +1065,7 @@ to aid in debugging.")
      (list go-github-com-cilium-ebpf
            go-github-com-cosiner-argv
            go-github-com-creack-pty
-           go-github-com-derekparker-trie-v3
+           go-github-com-derekparker-trie
            go-github-com-go-delve-liner
            go-github-com-google-go-dap
            go-github-com-hashicorp-golang-lru
@@ -1230,7 +1213,7 @@ and input distributions can also be expressed in Fandango.")
                           ;; Shorten paths to sockets in tests.
                           (lambda _ (setenv "TMPDIR" "/tmp"))))
            #:test-target "test"))
-    (native-inputs (list python python-setuptools)) ; for tests
+    (native-inputs (list python))      ; for tests
     (synopsis "Fault injector in userspace")
     (description "Fiu provides CLI utilities and a C library
 to mark points of failure inside your code

gnu/packages/dictionaries.scm

@@ -41,6 +41,7 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system trivial)
   #:use-module (gnu packages)
@@ -48,7 +49,6 @@
   #:use-module (gnu packages base)
   #:use-module (gnu packages bash)
   #:use-module (gnu packages bison)
-  #:use-module (gnu packages build-tools)
   #:use-module (gnu packages check)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages cpp)
@@ -122,83 +122,58 @@ Carnegie Mellon University.")
               "https://github.com/cmusphinx/cmudict/blob/master/LICENSE"))))
 
 (define-public dico
-  (let ((commit "05da4bc9e613834fdb065e38c7181044d8889575")
-        (revision "0"))
-    (package
-      (name "dico")
-      (version (git-version "2.12" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-                (url "https://git.gnu.org.ua/dico.git")
-                (commit commit)
-                (recursive? #t)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "1fmr01gpvvb1p6p9ylr67nqx8ymmmkqjhsi9y5zvp2nc32cgxvah"))))
-      (build-system gnu-build-system)
-      (arguments
-       (list
-        #:configure-flags #~(list "--disable-static")
-        #:phases
-        #~(modify-phases %standard-phases
-            (replace 'bootstrap
-              (lambda* (#:key inputs #:allow-other-keys)
-                (substitute* "grecs/bootstrap"
-                  (("/bin/sh")
-                   (which "bash"))
-                  ((" GRECS_GIT_ID=.*")
-                   " GRECS_GIT_ID=v1.0-25-g51b12be\n"))
-                (invoke "perl" "./bootstrap" "--force" "--skip-po")))
-            (add-before 'build 'post-configure
-              (lambda* (#:key inputs #:allow-other-keys)
-                ;; For some reason, this file is missing.
-                (install-file "gnulib/lib/getopt.c"
-                              "xdico/gnu")
-                ;; This code invokes "/bin/sh -c 'm4 -s ...'".
-                (substitute* "grecs/src/grecs-lex.l"
-                  (("\"/bin/sh")
-                   (string-append "\""
-                                  (search-input-file inputs "/bin/sh"))))))
-
-            (add-before 'check 'silence-guile
-              (lambda _
-                ;; Guile is too talkative, which disturbs the test
-                ;; infrastructure.  Gag it.
-                (setenv "GUILE_AUTO_COMPILE" "0")
-                (setenv "GUILE_WARN_DEPRECATED" "no"))))))
-      (native-inputs
-       (list autoconf-2.71
-             automake
-             bison
-             flex
-             gettext-minimal
-             groff
-             libtool
-             perl
-             texinfo))
-      (inputs
-       (list m4                           ;used at run time
-             bash-minimal                 ;likewise
-             pcre
-             python-wrapper
-             guile-3.0
-             gsasl
-             readline
-             zlib
-             wordnet
-             libxcrypt                    ;for 'crypt'
-             libltdl))
-      (home-page "https://www.gnu.org.ua/software/dico/")
-      (synopsis "Implementation of DICT server (RFC 2229)")
-      (description
-       "GNU Dico implements a flexible dictionary server and client according
-to RFC 2229 (DICT Server).  It is able to access any database available,
+  (package
+    (name "dico")
+    (version "2.12")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://gnu/dico/dico-"
+                                  version ".tar.xz"))
+              (sha256
+               (base32
+                "1xvahrav8aml90qcj4cj3a33y0n7nm1k0ywgks1zy2q91v2qk2vj"))))
+    (build-system gnu-build-system)
+    (arguments
+     (list
+      #:configure-flags #~(list "--disable-static")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'build 'set-shell-file-name
+            (lambda* (#:key inputs #:allow-other-keys)
+              ;; This code invokes "/bin/sh -c 'm4 -s ...'".
+              (substitute* "grecs/src/grecs-lex.c"
+                (("\"/bin/sh\"")
+                 (string-append "\""
+                                (search-input-file inputs "/bin/sh")
+                                "\"")))))
+          (add-before 'check 'silence-guile
+            (lambda _
+              ;; Guile is too talkative, which disturbs the test
+              ;; infrastructure.  Gag it.
+              (setenv "GUILE_AUTO_COMPILE" "0")
+              (setenv "GUILE_WARN_DEPRECATED" "no"))))))
+    (native-inputs (list groff))
+    (inputs
+     (list m4                           ;used at run time
+           bash-minimal                 ;likewise
+           pcre
+           python-wrapper
+           guile-3.0
+           gsasl
+           readline
+           zlib
+           wordnet
+           libxcrypt                    ;for 'crypt'
+           libltdl))
+    (home-page "https://www.gnu.org.ua/software/dico/")
+    (synopsis "Implementation of DICT server (RFC 2229)")
+    (description
+     "GNU Dico implements a flexible dictionary server and client according to
+RFC 2229 (DICT Server).  It is able to access any database available,
 regardless of format, thanks to its modular structure.  New modules may be
 written in C, Guile or Python.  Dico also includes a command-line client,
 which may be used to query remote dictionary databases.")
-      (license license:gpl3+))))
+    (license license:gpl3+)))
 
 (define-public libmaa
   (package

gnu/packages/diffoscope.scm

@@ -67,6 +67,7 @@
   #:use-module (gnu packages vim)
   #:use-module (gnu packages web)
   #:use-module (gnu packages xml)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix gexp)
   #:use-module (guix git-download)
@@ -289,6 +290,14 @@ install.")
               (for-each (lambda (file)
                           (chmod file #o755))
                         (find-files #$output "autopkgtest-virt-.*"))))
+          ;; Adjust use of importlib.resources to use python 3.10 compatible
+          ;; syntax, which requires an argument.
+          ;; Drop when switching to python 3.12+.
+          (add-after 'unpack 'adjust-importlib-resources-for-old-python
+            (lambda _
+              (substitute* "reprotest/__init__.py"
+                (("importlib.resources.files\\(\\)")
+                  "importlib.resources.files(package='reprotest')"))))
           (add-after 'unpack 'skip-most-tests
             ;; These tests require functionality not available in the guix
             ;; build environment

gnu/packages/digest.scm

@@ -27,6 +27,7 @@
   #:use-module (guix git-download)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system trivial)
   #:use-module (guix utils)
   #:use-module (gnu packages check)

gnu/packages/disk.scm

@@ -59,6 +59,7 @@
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system scons)
   #:use-module (guix build-system trivial)
@@ -265,14 +266,14 @@ tmpfs/ramfs filesystems.")
 (define-public parted
   (package
     (name "parted")
-    (version "3.7")
+    (version "3.6")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnu/parted/parted-"
                                   version ".tar.xz"))
               (sha256
                (base32
-                "0yzga4cjq3yplqs47dl9714vwc3v3v8nxrj80rdc5wx4c5syb380"))))
+                "04p6b4rygrfd1jrskwrx3bn2icajg1mvbfhyc0c9l3ya7kixnhrv"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -295,7 +296,6 @@ tmpfs/ramfs filesystems.")
        (,util-linux "lib")))
     (native-inputs
      (list gettext-minimal
-           pkg-config
 
            ;; For the tests.
            e2fsprogs
@@ -310,6 +310,18 @@ tmpfs/ramfs filesystems.")
 tables.  It includes a library and command-line utility.")
     (license license:gpl3+)))
 
+(define-public parted-3.4
+  (package
+    (inherit parted)
+    (version "3.4")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://gnu/parted/parted-"
+                                  version ".tar.xz"))
+              (sha256
+               (base32
+                "0hjkv84x1bs2qqyx1fnzjqyyqrhv7kpdbq9bgydmi99d8wi80ag1"))))))
+
 (define-public fdisk
   (package
     (name "fdisk")
@@ -1225,25 +1237,16 @@ and its highly optimized now for efficient performance.")
   (package
     (name "volume-key")
     (version "0.3.12")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://pagure.io/volume_key")
-              (commit (string-append "volume_key-" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0zadzbh26ckk263w02d02r2x3mry2kxbybkhwwaxwpv6jsrm7xr6"))))
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://releases.pagure.org/volume_key/volume_key-"
+                                  version ".tar.xz"))
+              (sha256
+               (base32
+                "16rhfz6sjwxlmss1plb2wv2i3jq6wza02rmz1d2jrlnsq67p98vc"))))
     (build-system gnu-build-system)
     (native-inputs
-     (list autoconf
-           automake
-           gettext-minimal
-           libtool
-           pkg-config
-           python       ; used to generate the Python bindings
-           python-setuptools
-           swig))
+     (list pkg-config swig-4.0 python-3))           ; used to generate the Python bindings
     (inputs
      (append
       (cons cryptsetup-minimal (libcryptsetup-propagated-inputs))
@@ -1253,21 +1256,15 @@ and its highly optimized now for efficient performance.")
             glib
             gpgme)))
     (arguments
-     (list
-      #:tests? #f ; not sure how tests are supposed to pass, even when run manually
-      #:configure-flags
-      #~(list "--without-python"
-              (string-append "--with-gpgme-prefix="
-                             #$(this-package-input "gpgme")))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'configure 'set-python-paths
-            (lambda* (#:key inputs #:allow-other-keys)
-              (let ((python #$(this-package-native-input "python")))
-                (setenv "PYTHON3"
-                        (string-append python "/bin/python3"))
-                (setenv "PYTHON3_CONFIG"
-                        (string-append python "/bin/python3-config"))))))))
+     `(#:tests? #f ; not sure how tests are supposed to pass, even when run manually
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'patch-python.h-path
+           (lambda* (#:key inputs #:allow-other-keys)
+             (let ((python (assoc-ref inputs "python")))
+               (substitute* "Makefile.in"
+                 (("/usr/include/python") (string-append python "/include/python")))
+               #t))))))
     (home-page "https://pagure.io/volume_key")
     (synopsis "Manipulate storage volume encryption keys")
     (description

gnu/packages/distributed.scm

@@ -46,7 +46,6 @@
   #:use-module (gnu packages perl)
   #:use-module (gnu packages sqlite)
   #:use-module (gnu packages python)
-  #:use-module (gnu packages python-build)
   #:use-module (gnu packages python-xyz))
 
 (define-public boinc-client
@@ -109,11 +108,7 @@ resources).  It supports virtualized, parallel, and GPU-based applications.")
                                      "--with-gtk"
                                      "--with-auth")))
     (native-inputs
-     (list autoconf
-           automake
-           pkg-config
-           python-setuptools
-           which))
+     (list pkg-config autoconf automake which))
     (inputs
      (list avahi
            gtk+

gnu/packages/django.scm

@@ -37,6 +37,7 @@
   #:use-module (guix git-download)
   #:use-module (guix gexp)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix deprecation)
   #:use-module (guix search-paths)
   #:use-module (guix utils)
@@ -312,7 +313,7 @@ to the @dfn{don't repeat yourself} (DRY) principle.")
         (base32 "1a5vd07wrnfbclvf6pz9p8ag9kdd1453lsl9q0bkyc45hq2xqd2a"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-django python-pytest python-setuptools))
+     (list python-django python-pytest python-pytest-cov python-setuptools))
     (home-page "https://github.com/epicserve/django-cache-url")
     (synopsis "Configure Django cache settings from URLs")
     (description
@@ -403,6 +404,7 @@ and adapters that are useful for non-trivial configuration scenarios.")
            python-factory-boy
            python-pygments
            python-pytest
+           python-pytest-cov ; runs by default
            python-pytest-django
            python-setuptools
            python-shortuuid
@@ -1311,6 +1313,7 @@ server headers required for Cross-Origin Resource Sharing (CORS).")
            python-mock
            python-msgpack
            python-pytest
+           python-pytest-cov
            python-pytest-django
            python-pytest-mock
            python-setuptools
@@ -2167,6 +2170,7 @@ templates and not in python-level form definitions.")
     (build-system pyproject-build-system)
     (native-inputs
      (list python-pytest
+           python-pytest-cov ; runs by default
            python-pytest-django
            python-setuptools
            python-wheel))

gnu/packages/djvu.scm

@@ -29,6 +29,7 @@
   #:use-module (guix git-download)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)
   #:use-module (gnu packages bash)

gnu/packages/dlang.scm

@@ -52,7 +52,6 @@
   #:use-module (gnu packages perl)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages python)
-  #:use-module (gnu packages python-build)
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages textutils)
   #:use-module (gnu packages xorg)
@@ -117,7 +116,6 @@
        ("ldc" ,gdmd)
        ("ninja" ,ninja)
        ("python-wrapper" ,python-wrapper)
-       ("python-setuptools" ,python-setuptools)
        ("tzdata" ,tzdata-for-tests)
        ("unzip" ,unzip)))
     (home-page "http://wiki.dlang.org/LDC")

gnu/packages/dns.scm

@@ -24,7 +24,7 @@
 ;;; Copyright © 2023 Hilton Chain <hako@ultrarare.space>
 ;;; Copyright © 2023 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2024 John Kehayias <john.kehayias@protonmail.com>
-;;; Copyright © 2024-2026 Ashish SHUKLA <ashish.is@lostca.se>
+;;; Copyright © 2024, 2025 Ashish SHUKLA <ashish.is@lostca.se>
 ;;; Copyright © 2025 Artyom V. Poptsov <poptsov.artyom@gmail.com>
 ;;; Copyright © 2026 Anderson Torres <anderson.torres.8519@gmail.com>
 ;;;
@@ -841,14 +841,14 @@ to result in system-wide compromise.")
 (define-public unbound
   (package
     (name "unbound")
-    (version "1.25.1")
+    (version "1.24.2")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://www.unbound.net/downloads/unbound-"
                            version ".tar.gz"))
        (sha256
-        (base32 "0vsqmgnq7ibi0b3akzy45nqf0wazmb0bmpk2fp8wyn89gckvds0g"))))
+        (base32 "1nwwwmwazwx40nm88lhh7k1basml2ai6j9q30gnclvca00zbbrs4"))))
     (build-system gnu-build-system)
     (outputs '("out" "python"))
     (native-inputs
@@ -1425,7 +1425,7 @@ and TCP-capable recursive DNS server for finding domains on the internet.")
 (define-public openresolv
   (package
     (name "openresolv")
-    (version "3.17.4")
+    (version "3.13.2")
     (source
      (origin
        (method git-fetch)
@@ -1435,7 +1435,7 @@ and TCP-capable recursive DNS server for finding domains on the internet.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "1lawj50qhr2yj7fy3p8x4m3kqz4lbvghnjc4jlqnxp484hg83ki3"))
+         "03m8n0j0kxxm5kpl66gz4lxr1qqgrp8zlkaq9j8fz27fih0g75xf"))
        (patches
         (search-patches "openresolv-restartcmd-guix.patch"))))
     (build-system gnu-build-system)

gnu/packages/docbook.scm

@@ -53,6 +53,7 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (srfi srfi-26))
 
 ;; The fetch-plan, install-plan and phases for docbook-xml tend to vary
@@ -665,8 +666,7 @@ the in DocBook SGML DTDs.")
                (base32
                 "0yd09nypswy3q4scri1dg7dr99d7gd6r2dwx0xm81l9f4y32gs0n"))
               (patches
-               (search-patches "dblatex-importlib.patch"
-                               "dblatex-inkscape-1.0.patch"))))
+               (search-patches "dblatex-inkscape-1.0.patch"))))
     (outputs '("out" "doc"))
     (build-system pyproject-build-system)
     (arguments

gnu/packages/docker.scm

@@ -39,12 +39,12 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system go)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix utils)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)
   #:use-module (gnu packages check)
-  #:use-module (gnu packages containers)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages glib)
   #:use-module (gnu packages golang)
@@ -198,50 +198,6 @@ enforce convention and best practices for metrics collection in Docker
 projects.")
     (license (list license:asl2.0 license:cc-by-sa4.0))))
 
-(define-public go-github-com-moby-policy-helpers
-  (package
-    (name "go-github-com-moby-policy-helpers")
-    (version "0.0.0-20260507153417-a39d60132186")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/moby/policy-helpers")
-              (commit (go-version->git-ref version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "12fa602jianip7dg98f2i9i686s2a9bsclw8sqxw1ac1v19qlqr8"))
-       (modules '((guix build utils)))
-       (snippet '(delete-file-recursively "vendor"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:go go-1.25
-      #:embed-files #~(list ".*\\.json")
-      #:import-path "github.com/moby/policy-helpers"))
-    (native-inputs
-     (list go-github-com-stretchr-testify))
-    (propagated-inputs
-     (list go-github-com-containerd-containerd-v2
-           go-github-com-containerd-errdefs
-           go-github-com-containerd-platforms
-           go-github-com-distribution-reference
-           go-github-com-gofrs-flock
-           go-github-com-in-toto-in-toto-golang
-           go-github-com-opencontainers-go-digest
-           go-github-com-opencontainers-image-spec
-           go-github-com-pkg-errors
-           go-github-com-sigstore-protobuf-specs
-           go-github-com-sigstore-sigstore
-           go-github-com-sigstore-sigstore-go
-           go-github-com-theupdateframework-go-tuf-v2
-           go-golang-org-x-sync))
-    (home-page "https://github.com/moby/policy-helpers")
-    (synopsis "Policy helpers for Docker")
-    (description "This package provides a policy helpers for Moby (Docker)
-and BuildKit.  It is a work in progress.")
-    (license license:asl2.0)))
-
 (define-public python-docker
   (package
     (name "python-docker")
@@ -372,26 +328,6 @@ application’s services.  Then, using a single command, the containers are
 created and all the services are started as specified in the configuration.")
     (license license:asl2.0)))
 
-(define-public docker-policy-helper
-  (package/inherit go-github-com-moby-policy-helpers
-    (name "docker-policy-helper")
-    (arguments
-     (substitute-keyword-arguments arguments
-       ((#:import-path _) "github.com/moby/policy-helpers/cmd/policy-helper")
-       ((#:install-source? _ #t) #f)
-       ((#:skip-build? _ #t) #f)
-       ((#:tests? _ #t) #f)
-       ((#:unpack-path _ "") "github.com/moby/policy-helpers")
-       ((#:phases phases '%standard-phases)
-        #~(modify-phases #$phases
-            (add-after 'install 'fix-bin-name
-              (lambda _
-                (rename-file (string-append #$output "/bin/policy-helper")
-                             (string-append #$output "/bin/docker-policy-helper"))))))))
-    (native-inputs (package-propagated-inputs go-github-com-moby-policy-helpers))
-    (propagated-inputs '())
-    (inputs '())))
-
 (define-public python-docker-pycreds
   (package
     (name "python-docker-pycreds")

gnu/packages/documentation.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014, 2018, 2026 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2014, 2018 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2014, 2016 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
@@ -41,6 +41,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system copy)
   #:use-module (guix build-system perl)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (guix deprecation)
@@ -191,20 +192,21 @@ markup) can be customized and extended by the user.")
 
 (define-deprecated asciidoc-py3 asciidoc)
 
-(define-public doxygen-1.16
+(define-public doxygen
   (package
     (name "doxygen")
-    (version "1.16.1")
+    (version "1.14.0")
     (home-page "https://www.doxygen.nl/")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (list (string-append home-page "files/doxygen-" version
-                                 ".src.tar.gz")
-                  (string-append "mirror://sourceforge/doxygen/rel-" version
-                                 "/doxygen-" version ".src.tar.gz")))
-       (sha256
-        (base32 "1a33w82ln692qsf3ls0j31f6khljjs1cy3bwd70pra2fa4xy6710"))))
+    (source (origin
+              (method url-fetch)
+              (uri (list (string-append home-page "files/doxygen-"
+                                        version ".src.tar.gz")
+                         (string-append "mirror://sourceforge/doxygen/rel-"
+                                        version "/doxygen-" version
+                                        ".src.tar.gz")))
+              (sha256
+               (base32
+                "0pbbdvc1zxps6mi58bry16rcrdw6b9gvf9nhv0kp60qkmc8nslyl"))))
     (build-system cmake-build-system)
     (native-inputs
      (list bison
@@ -248,25 +250,6 @@ IDL (Corba, Microsoft, and UNO/OpenOffice flavors), Fortran, VHDL, Tcl,
 and to some extent D.")
     (license license:gpl3+)))
 
-(define-public doxygen-1.14
-  (package
-    (inherit doxygen-1.16)
-    (name "doxygen")
-    (version "1.14.0")
-    (home-page "https://www.doxygen.nl/")
-    (source (origin
-              (method url-fetch)
-              (uri (list (string-append home-page "files/doxygen-"
-                                        version ".src.tar.gz")
-                         (string-append "mirror://sourceforge/doxygen/rel-"
-                                        version "/doxygen-" version
-                                        ".src.tar.gz")))
-              (sha256
-               (base32
-                "0pbbdvc1zxps6mi58bry16rcrdw6b9gvf9nhv0kp60qkmc8nslyl"))))))
-
-(define-public doxygen doxygen-1.14)
-
 (define-public halibut
   (package
     (name "halibut")
@@ -489,8 +472,9 @@ inspired by Dash.")
     (build-system gnu-build-system)
     (arguments
      (list
-      ;; Custom build steps to prevent using pyproject-build-system which
-      ;; allows to edit the latter without a texlive + haskell world rebuild.
+      ;; Essentially a lighter copy of the former python-build-system.
+      ;; Using it rather than pyproject-build-system allows to edit the latter
+      ;; without a texlive + haskell world rebuild.
       #:phases
       #~(modify-phases %standard-phases
           (delete 'bootstrap)

gnu/packages/dotnet.scm

@@ -62,6 +62,7 @@
   #:use-module (guix utils)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
+  #:use-module (guix build-system python)
   #:use-module (ice-9 match))
 
 (define-public treecc

gnu/packages/duckdb.scm

@@ -25,6 +25,7 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system pyproject)
+  #:use-module ((guix build-system python) #:select (pypi-uri))
   #:use-module (guix build-system r)
   #:use-module (guix download)
   #:use-module (guix gexp)

gnu/packages/ebook.scm

@@ -40,6 +40,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (gnu packages)
   #:use-module (gnu packages autotools)
@@ -206,7 +207,7 @@ with Microsoft Compiled HTML (CHM) files.")
            python-css-parser
            python-cssselect
            python-dateutil
-           python-dnspython
+           python-dnspython-1.16
            python-feedparser
            python-fonttools
            python-html2text
@@ -282,9 +283,7 @@ tags = [\"WS_X11\"]")
                  (string-append "[tool.sip.project]
 sip-include-dirs = [\""
                    #$(this-package-input "python-pyqt")
-                   "/lib/python"
-                   #$(version-major+minor (package-version python))
-                   "/site-packages/PyQt6/bindings\"]")))
+                   "/lib/python3.11/site-packages/PyQt6/bindings\"]")))
               (substitute* "src/calibre/ebooks/pdf/pdftohtml.py"
                 (("PDFTOHTML = 'pdftohtml'")
                  (string-append "PDFTOHTML = \""
@@ -416,43 +415,6 @@ e-books for convenient reading.")
 accessing and converting various ebook file formats.")
     (license license:expat)))
 
-(define-public epub-thumbnailer
-  ;; See: <https://github.com/marianosimone/epub-thumbnailer/issues/46>.
-  (let ((commit "de4b5bf0fcd1817d560f180231f7bd22d330f1be")
-        (revision "0"))
-    (package
-      (name "epub-thumbnailer")
-      (version (git-version "0.0.0" revision commit))
-      (home-page "https://github.com/marianosimone/epub-thumbnailer")
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-                (url home-page)
-                (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "1bkknrcds67qkgci6kdkv51fz8hzmqg8z1vkkni4jl4vgix7cjxg"))))
-      (build-system pyproject-build-system)
-      (arguments
-       (list
-        #:tests? #f     ;no tests provided
-        #:phases
-        #~(modify-phases %standard-phases
-            (add-after 'strip 'rename-program
-              (lambda _
-                (with-directory-excursion #$output
-                  (rename-file "bin/epub-thumbnailer.py"
-                               "bin/epub-thumbnailer")))))))
-      (propagated-inputs (list python-pillow))
-      (native-inputs (list python-setuptools))
-      (synopsis
-       "Extract the cover of an epub book and create a thumbnail for it")
-      (description
-       "@code{epub-thumbnailer} is a simple script that tries to find a cover
-into an epub file and creates a thumbnail for it.")
-      (license license:gpl3))))
-
 (define-public inkbox
   (package
     (name "inkbox")

gnu/packages/education.scm

@@ -91,6 +91,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system go)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system trivial)
   #:use-module (srfi srfi-1))

gnu/packages/efi.scm

@@ -204,3 +204,48 @@ and EFI variable management.")
     ;; Library routines (in lib/) are under LGPL 2.1.
     ;; Compiling/linking/using OpenSSL is permitted.
     (license (list license:gpl2 license:lgpl2.1))))
+
+(define-public efilinux
+  (package
+    (name "efilinux")
+    (version "1.1")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/mfleming/efilinux")
+                    (commit (string-append "efilinux-" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "0b4nxzr3wl5v4b52r79iw1arfgasz26xb38r2blw9v2qz2s1q9w2"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:make-flags
+       (list "CC=gcc"
+             ,@(match (%current-system)
+                 ("aarch64-linux"
+                  '("ARCH=aarch64"))
+                 ("armhf-linux"
+                  '("ARCH=arm"))
+                 (_ '()))
+             (string-append "INCDIR=" (assoc-ref %build-inputs "gnu-efi")
+                            "/include")
+             (string-append "LIBDIR=" (assoc-ref %build-inputs "gnu-efi")
+                            "/lib"))
+       #:tests? #f ; No tests exist.
+       #:phases
+       (modify-phases %standard-phases
+         (delete 'configure)
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (install-file "efilinux.efi"
+                           (string-append (assoc-ref outputs "out")
+                                          "/libexec"))
+             #t)))))
+    (inputs
+     (list gnu-efi))
+    (synopsis "Minimal Linux loader for UEFI")
+    (description "This package provides a minimal Linux loader as an UEFI
+program.")
+    (home-page "https://github.com/mfleming/efilinux")
+    (license license:bsd-2)))

gnu/packages/electronics.scm

@@ -64,6 +64,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix deprecation)
   #:use-module (guix download)
@@ -104,13 +105,11 @@
   #:use-module (gnu packages gnome)
   #:use-module (gnu packages gperf)
   #:use-module (gnu packages graph)
-  #:use-module (gnu packages graphics)
   #:use-module (gnu packages graphviz)
   #:use-module (gnu packages groff)
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages guile)
   #:use-module (gnu packages image)
-  #:use-module (gnu packages image-processing)
   #:use-module (gnu packages java)
   #:use-module (gnu packages libedit)
   #:use-module (gnu packages libffi)
@@ -195,10 +194,6 @@
             (add-after 'unpack 'generate-gdk-pixbuf-loaders-cache-file
               (assoc-ref glib-or-gtk:%standard-phases
                          'generate-gdk-pixbuf-loaders-cache-file))
-            (add-after 'unpack 'fix-python-incompatibilities
-              (lambda _
-                (substitute* (find-files "." "\\.py$")
-                  (("assertEquals") "assertEqual"))))
             (add-before 'build 'set-home-env
               (lambda _
                 (setenv "HOME" "/tmp")))
@@ -245,8 +240,8 @@ are also taken from the original.")
       (license license:gpl3+))))
 
 (define-public abc
-  (let ((commit "7bf1177d3900212df9e5c32ffc3ff2f59bc9b02b")
-        (revision "11"))
+  (let ((commit "80c8a9a1928ef8148a6b504e9590ec07c55c8bcf")
+        (revision "10"))
     (package
       (name "abc")
       (version (git-version "0.0" revision commit))
@@ -258,7 +253,7 @@ are also taken from the original.")
                 (file-name (git-file-name name version))
                 (sha256
                  (base32
-                  "1zyip7x3av03mp766m60md2a8g8xp4divpgxj6n4760i753i9b85"))))
+                  "1fbnwsd841z86vfv45443qfpx0l199vf08sgms8wyz19jw7m5ds6"))))
       (build-system gnu-build-system)
       (inputs
        (list readline))
@@ -283,7 +278,7 @@ formal verification.")
   (package
     (inherit abc)
     (name "abc-yosyshq")
-    (version "0.65")
+    (version "0.64")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -292,53 +287,12 @@ formal verification.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "11viizz5kxh93a56fqxq0ma4945whzlfagw5bb61aw2jlyqym9ka"))))
+                "1jk74yq7dnrnai8r9hqc10jcjmgj50jxj6hsflmvc61acm1r3f8r"))))
     (home-page "https://github.com/YosysHQ/abc/")
     (description "ABC is a program for sequential logic synthesis and
 formal verification.  This is the Yosyshq fork of ABC.")
     (license (license:non-copyleft "file:///copyright.txt"))))
 
-(define-public appcsxcad
-  (package
-    (name "appcsxcad")
-    (version "0.2.3")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/thliebig/AppCSXCAD")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "145awcsg4vl2xmrh5yf9fcasmghrai3x6ivgdxmrm1w3v9gyaccf"))))
-    (build-system qt-build-system)
-    (arguments
-     (list
-      #:qtbase qtbase ;for Qt 6
-      #:tests? #f)) ;No tests.
-    (inputs (list boost
-                  cgal
-                  csxcad
-                  eigen
-                  expat
-                  freetype
-                  gmp
-                  hdf5
-                  libjpeg-turbo
-                  libpng
-                  libtiff
-                  lz4
-                  openmpi
-                  qcsxcad
-                  tinyxml
-                  vtk))
-    (home-page "https://github.com/thliebig/AppCSXCAD")
-    (synopsis "Minimal GUI application for the @code{qcsxcad} library")
-    (description
-     "A minimal application for the @code{qcsxcad} library which is used to
-    describe geometrical objects and their physical and non-physical properties.")
-    (license license:gpl3)))
-
 (define-public apycula
   (package
     (name "apycula")
@@ -450,7 +404,7 @@ standard-cells.  It is compatible with @code{ngspice} and @code{Xyce}.")
 (define-public ciel
   (package
     (name "ciel")
-    (version "2.4.1")
+    (version "2.4.0")
     (source
      (origin
        (method git-fetch)
@@ -459,7 +413,7 @@ standard-cells.  It is compatible with @code{ngspice} and @code{Xyce}.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "08r30ighn86995dcf7278k9nrci8wbp6kglgk011y6g80z9m2zm7"))))
+        (base32 "0cj4cpmpqi7aqj9jkpp87qs9bjcg3j97adv1s91pnfrkplff8rh1"))))
     (arguments
      (list
       #:tests? #f ;no tests
@@ -489,62 +443,6 @@ standard-cells.  It is compatible with @code{ngspice} and @code{Xyce}.")
 chip design and @acronym{EDA, Electronic Design Automation}.")
     (license license:asl2.0)))
 
-(define-public csxcad
-  (package
-    (name "csxcad")
-    (version "0.6.3")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/thliebig/CSXCAD")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1c383zsv4fp40kmpawamfi9zg3b8x3d4m091ldwk15mii3467hp3"))))
-    (build-system cmake-build-system)
-    (arguments
-     (list
-      #:tests? #f ; No tests.
-      #:configure-flags
-      #~(list
-         (string-append "-DFPARSER_ROOT_DIR=" #$(this-package-input "fparser")))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'fix-cmake-and-sources
-            (lambda _
-              (substitute* "CMakeLists.txt"
-                (("  system\n")
-                 "")
-                (("find_package\\(HDF5 1.8 COMPONENTS C HL REQUIRED\\)")
-                 "find_package(HDF5 REQUIRED COMPONENTS C HL)"))
-              ;; Fix missing `std::`.
-              ;; This is fixed in upstream already but not tagged.
-              (substitute* "src/CSPropDiscMaterial.cpp"
-                (("\tcout ")
-                 "\tstd::cout ")))))))
-    (inputs (list boost
-                  cgal
-                  eigen
-                  fparser
-                  hdf5
-                  gmp
-                  libjpeg-turbo
-                  libpng
-                  libtiff
-                  lz4
-                  mpfr
-                  openmpi
-                  tinyxml
-                  vtk
-                  zlib))
-    (home-page "https://github.com/thliebig/CSXCAD")
-    (synopsis "3D geometry library for C++")
-    (description
-     "@code{csxcad} is a C++ library to describe geometrical objects
-and their physical or non-physical properties for electromagnetics simulations.")
-    (license license:lgpl3+)))
-
 (define-public comedilib
   (package
     (name "comedilib")
@@ -569,7 +467,7 @@ individual low-level driver modules.")
 (define-public eqy
   (package
     (name "eqy")
-    (version "0.65")
+    (version "0.64")
     (source
      (origin
        (method git-fetch)
@@ -582,10 +480,8 @@ individual low-level driver modules.")
     (build-system gnu-build-system)
     (arguments
      (list
-      #:imported-modules %pyproject-build-system-modules
-      #:modules '((guix build gnu-build-system)
-                  ((guix build pyproject-build-system) #:prefix py:)
-                  (guix build utils))
+      #:imported-modules (append %default-gnu-imported-modules
+                                 %python-build-system-modules)
       #:make-flags
       #~(list (string-append "PREFIX=" #$output))
       #:phases
@@ -612,7 +508,7 @@ individual low-level driver modules.")
                 (invoke "make" "-C" "examples/spm")
                 (invoke "make" "-C" "examples/simple"))))
           (add-after 'install 'python:wrap
-            (assoc-ref py:%standard-phases 'wrap)))))
+            (@@ (guix build python-build-system) wrap)))))
     (native-inputs
      (list clang python-minimal-wrapper python-sphinx texinfo yosys))
     (inputs
@@ -1021,7 +917,7 @@ files.")
 (define-public klayout
   (package
     (name "klayout")
-    (version "0.30.8")
+    (version "0.30.7")
     (source
      (origin (method git-fetch)
              (uri (git-reference
@@ -1030,7 +926,7 @@ files.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-               "0aw0y5k27pslql9pir6nplapj6ml6fkhzd815s13rlnw3bm0fcs6"))))
+               "0xyrn9vhx871vm141hgsb9qrdim51vfk2mw8hcqyam1ixkbz5jjv"))))
     (build-system copy-build-system)
     (arguments
      (list
@@ -1173,7 +1069,7 @@ characterization result in a liberty library file.")
 (define-public kicad
   (package
     (name "kicad")
-    (version "10.0.3")
+    (version "10.0.1")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1181,7 +1077,7 @@ characterization result in a liberty library file.")
                     (commit version)))
               (sha256
                (base32
-                "0ldaj072x16452xw2wszbk20g932rz36zappjrxc4m6ygx298aa3"))
+                "1mnlv8fyz03pfg8pkqwdl5gjz6vsk98c6414lf3wkvrkb85ljaav"))
               (file-name (git-file-name name version))))
     (build-system cmake-build-system)
     (arguments
@@ -1306,7 +1202,7 @@ package.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1532y6whn1bcwjb417qlga1hibgpfqs594l9zs4c8f5ymaqb8s1b"))))
+                "1c0vn13rp0z12rlqhl321pk2gj9577dyky6xj3i6hb040i3v7zrr"))))
     (build-system cmake-build-system)
     (arguments
      `(#:configure-flags (list "-DBUILD_FORMATS=html"
@@ -1338,7 +1234,7 @@ package.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "05h8dbygch2kp4s5ikspxngwv999j7jwsiwm4pzwwcrir7dqzdfl"))))
+                "0iz4lb33wdsw4f82a0ln8ycgaf39gjws03mvl2j1q9npwj6xl1cm"))))
     (build-system cmake-build-system)
     (native-inputs (list python-wrapper))
     (arguments
@@ -1368,7 +1264,7 @@ libraries.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0wdzsn7z11wc5yskk576a4a6qfagsvw0y6r034inxrnfc32aiah9"))))
+                "0jqgyi1yb2zc6w56ba7xama0wnhrqwbbnf2fqvr47xihvdcvs87v"))))
     (synopsis "Official KiCad footprint libraries")
     (description "This package contains the official KiCad footprint libraries.")))
 
@@ -1385,7 +1281,7 @@ libraries.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "01nbjcs3890hyfmafc623ldmfi9n8sjr5m0wripz5fq5fjdnzqxl"))))
+                "0jr70ry6inzc2fy3s300z0zlmihbq95ba1zckyd1wwbpplaj1gbl"))))
     (synopsis "Official KiCad 3D model libraries")
     (description "This package contains the official KiCad 3D model libraries.")))
 
@@ -1407,60 +1303,6 @@ libraries.")
     (description "This package contains the official KiCad project and
 worksheet templates.")))
 
-(define-public kicad-cern-libraries
-  ;; Upstream does not tag releases.
-  (let ((commit "980670fefdf71965aae6c56194d7f2a68c3e6a68")
-        (revision "0"))
-    (package
-      (name "kicad-cern-libraries")
-      (version (git-version "0" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-                (url "https://gitlab.com/ohwr/cern-kicad-libs.git")
-                (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "0lr1p28gknbgsr86hbzh87plagcyc040v6141xmha280n78h2l62"))))
-      (build-system copy-build-system)
-      (arguments
-       (list
-        #:install-plan
-        #~'(("SchLib" "share/kicad/cern/")
-            ("PcbLib" "share/kicad/cern/")
-            ("CERN.sqlite" "share/kicad/cern/")
-            ("CERN_Linux.kicad_dbl" "share/kicad/cern/")
-            ("fp-lib-table" "share/kicad/cern/")
-            ("sym-lib-table" "share/kicad/cern/")
-            ("README.md" "share/doc/kicad-cern-libraries/")
-            ("LICENSE" "share/doc/kicad-cern-libraries/")
-            ("LICENSES" "share/doc/kicad-cern-libraries/")
-            ("CHECKSUMS" "share/doc/kicad-cern-libraries/")
-            ("pcblib_conversion_log.txt" "share/doc/kicad-cern-libraries/")
-            ("schlib_conversion_log.txt" "share/doc/kicad-cern-libraries/"))
-        #:phases
-        #~(modify-phases %standard-phases
-            (add-after 'unpack 'adapt-library-tables
-              (lambda _
-                (substitute* "sym-lib-table"
-                  (("\\$\\{KICAD9_SYMBOL_DIR\\}")
-                   "${KICAD10_SYMBOL_DIR}")))))))
-      (propagated-inputs (list sqliteodbc))
-      (native-search-paths
-       (list (search-path-specification
-              (variable "CERN_LIB_DIR")
-              (files '("share/kicad/cern"))
-              (separator #f))))
-      (home-page "https://gitlab.com/ohwr/cern-kicad-libs")
-      (synopsis "CERN component libraries for KiCad")
-      (description
-       "This package provides CERN's KiCad component libraries, including
-schematic symbols, footprints, a SQLite-backed database library, and KiCad
-library tables.  The libraries are generated from CERN's Altium Designer
-libraries.")
-      (license license:ohl2-p))))
-
 (define-public lepton-eda
   (package
     (name "lepton-eda")
@@ -1662,7 +1504,7 @@ an embedded event driven algorithm.")
 (define-public librelane
   (package
     (name "librelane")
-    (version "3.0.3")
+    (version "3.0.2")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1671,16 +1513,12 @@ an embedded event driven algorithm.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0g4b5kby7zp8v59xzxmfxh3a2yqvmmsb1wsmasl3cz1aibk343a8"))))
+                "1v43adkw5c624nd06g11cb609v8pj3prfyyawbq3i4k1w1law597"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       #:phases
       #~(modify-phases %standard-phases
-          (add-after 'unpack 'relax-requirements
-            (lambda _
-              (substitute* "pyproject.toml"
-                (("click>=8,<8.3") "click>=8"))))
           (add-after 'compress-documentation 'wrap-program
             (lambda _
               (wrap-program (string-append #$output "/bin/librelane")
@@ -1932,31 +1770,6 @@ management with library, schematic and board editors.")
       (license (list license:expat      ;libfst and fastlz-derived sources
                      license:bsd-2))))) ;for lz4-derived sources
 
-(define-public python-csxcad
-  (package
-    (inherit csxcad)
-    (name "python-csxcad")
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      ;; Tests are broken in v0.6.3.
-      ;; Check on update.
-      #:tests? #f
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'build 'prepare-build
-            (lambda _
-              (chdir "./python")
-              (setenv "CSXCAD_INSTALL_PATH"
-                      #$(this-package-input "csxcad")))))))
-    (native-inputs (list python-minimal python-cython python-numpy
-                         python-setuptools))
-    (inputs (list csxcad fparser hdf5 python-numpy tinyxml))
-    (synopsis "Python bindings for @code{csxcad}")
-    (description "Library for describing geometrical objects and their
-physical and non-physical properties.")
-    (license license:lgpl3+)))
-
 (define-public python-lln-libparse
   (package
     (name "python-lln-libparse")
@@ -2207,7 +2020,7 @@ which allows one to install the M8 firmware on any Teensy.")
 (define-public magic
   (package
     (name "magic")
-    (version "8.3.644")
+    (version "8.3.633")
     (source
      (origin
        (method git-fetch)
@@ -2216,7 +2029,7 @@ which allows one to install the M8 firmware on any Teensy.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0qp1alm4pczfm77r8lxwgzrwh02ihvfmk9sbwjlfbrixg1dn85xb"))))
+        (base32 "1rwrhb0q99rpv4lbiw1sqykwzf9gj1my2wkh6mp8g36rab2vhii3"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -2246,7 +2059,7 @@ versus schematic} tests and can assist with automatic routing.")
 (define-public mcy
   (package
     (name "mcy")
-    (version "0.65")
+    (version "0.64")
     (source
      (origin
        (method git-fetch)
@@ -2261,10 +2074,7 @@ versus schematic} tests and can assist with automatic routing.")
      (list
       #:tests? #f                       ;there are no tests
       #:imported-modules (append %qt-build-system-modules
-                                 %pyproject-build-system-modules)
-      #:modules '((guix build qt-build-system)
-                  ((guix build pyproject-build-system) #:prefix py:)
-                  (guix build utils))
+                                 %python-build-system-modules)
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'build-info-documentation
@@ -2293,7 +2103,7 @@ versus schematic} tests and can assist with automatic routing.")
               (install-it "mcy")
               (install-it "mcy-dash")))
           (add-after 'make-install 'python:wrap
-            (assoc-ref py:%standard-phases 'wrap)))))
+            (@@ (guix build python-build-system) wrap)))))
     (native-inputs
      (list pkg-config
            python-sphinx
@@ -2312,7 +2122,7 @@ coverage.")
 (define-public netgen
   (package
     (name "netgen")
-    (version "1.5.319")
+    (version "1.5.318")
     (source
      (origin
        (method git-fetch)
@@ -2321,7 +2131,7 @@ coverage.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "16xd2xcsny1bb6yk4lz34jfpwfb5xi2i9izxjymmalnzhg32i9cz"))))
+        (base32 "19rd8y2pspycr2296nhm60fhsgnzlyzb09wx2kgqzg6s7h6cmrr5"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -2669,66 +2479,6 @@ such as:
 @end itemize")
     (license license:expat)))
 
-(define-public openems
-  (package
-    (name "openems")
-    (version "0.0.36")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/thliebig/openEMS")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1vxlknnji7kha0kabpjqh48i4r0rqlla9gcxhn69d0gcw76albmw"))))
-    (build-system cmake-build-system)
-    (arguments
-     (list
-      #:configure-flags
-      #~(list (string-append "-DCSXCAD_ROOT_DIR="
-                             #$(this-package-input "csxcad"))
-              (string-append "-DFPARSER_ROOT_DIR="
-                             #$(this-package-input "fparser")))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'fix-cmake
-            (lambda _
-              (substitute* "CMakeLists.txt"
-                (("  system\n") "")
-                (("find_package\\(HDF5 1.8 COMPONENTS C HL REQUIRED\\)")
-                 "find_package(HDF5 1.8 REQUIRED)"))))
-          (delete 'check)
-          (add-after 'install 'check
-            (lambda* (#:key tests? source inputs #:allow-other-keys)
-              (when tests?
-                (let* ((testsuite (string-append source "/TESTSUITE"))
-                       (testsuite-tmp "/tmp/openEMS-TESTSUITE"))
-                  ;; Testsuite directory needs to be writable.
-                  (copy-recursively testsuite testsuite-tmp)
-                  (invoke "octave" "--no-gui" "--eval"
-                          (string-append
-                            "addpath('" #$output "/share/openEMS/matlab');"
-                            "addpath('"
-                            (search-input-directory inputs "share/CSXCAD/matlab")
-                            "');"
-                            ;; Work around bug in test script.
-                            "addpath('" testsuite-tmp "/helperscripts');"
-                            "run('" testsuite-tmp "/run_testsuite.m');")))))))))
-    (native-inputs (list cmake-minimal octave pkg-config))
-    (inputs (list boost
-                  csxcad
-                  fparser
-                  hdf5
-                  openmpi
-                  tinyxml
-                  vtk))
-    (home-page "https://www.openems.de")
-    (synopsis "Electromagnetic field solver")
-    (description "@code{OpenEMS} is an electromagnetic field solver using
-the @acronym{FDTD, Finite-Difference Time-Domain} method.")
-    (license license:gpl3+)))
-
 (define-public pcb-rnd
   (package
     (name "pcb-rnd")
@@ -3260,6 +3010,7 @@ Numpy arrays for convenience.")
               (setenv "PDM_BUILD_SCM_VERSION" #$version))))))
     (native-inputs
      (list python-pdm-backend
+           python-pytest-cov
            python-setuptools
            python-setuptools-scm
            sby
@@ -3438,12 +3189,8 @@ SystemVerilog, and SystemC, with conversion between languages and to JSON.")
                                           inputs "include/antlr4-runtime"))
                      (antlr4cpp-lib (search-input-file
                                       inputs "lib/libantlr4-runtime.so"))
-                     (python-include
-                      (search-input-directory
-                       inputs
-                       (string-append
-                        "include/python"
-                        #$(version-major+minor (package-version python))))))
+                     (python-include (search-input-directory
+                                       inputs "include/python3.11")))
                 ;; Patch CMake to use our paths directly.
                 (substitute* "src/CMake_antlr4.txt"
                   (("set\\(ANTLR_CLASSPATH \"\"\\)")
@@ -3535,44 +3282,6 @@ integrated circuit Hardware Description Language} and SystemVerilog
 parser library for Python.")
     (license license:expat)))
 
-(define-public python-openems
-  (package
-    (inherit openems)
-    (name "python-openems")
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:tests? #f ; No tests.  Check again on package upgrade.
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'fix-sources
-            ;; Check if this is still needed on upgrade.
-            (lambda _
-              (substitute* "python/openEMS/_nf2ff.pxd"
-                (("cimport cython.numeric")
-                 "import cython
-from cython cimport numeric"))))
-          (add-before 'build 'prepare-build
-            (lambda* _
-              (chdir "./python")
-              (setenv "CSXCAD_INSTALL_PATH"
-                      #$(this-package-input "csxcad"))
-              (setenv "OPENEMS_INSTALL_PATH"
-                      #$(this-package-input "openems")))))))
-    (native-inputs (list python-cython python-setuptools))
-    (inputs (list csxcad
-                  fparser
-                  openems
-                  python-csxcad
-                  python-hdf5storage
-                  python-numpy
-                  tinyxml))
-    (home-page "https://www.openems.de")
-    (synopsis "Python API for the electromagnetic field solver @code{OpenEMS}")
-    (description "@code{OpenEMS} is an electromagnetic field solver using
-the @acronym{FDTD, Finite-Difference Time-Domain} method.")
-    (license license:gpl3+)))
-
 (define-public python-pyucis
   (package
     (name "python-pyucis")
@@ -3608,16 +3317,15 @@ Standard} data mode.")
     (version "0.4.1")
     (source
      (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/SanDisk-Open-Source/pyvcd")
-             (commit version)))
-       (file-name (git-file-name name version))
+       (method url-fetch)
+       (uri (pypi-uri "pyvcd" version))
        (sha256
-        (base32 "1a1fsgxmpy6gbrs7lp3a56b7d4g6srlp42y5azb1ywjx3w8fiwc6"))))
+        (base32 "15nnydvr1a4ykh8cagi484sfgvdg0dnjxaw6c0ivhjbrbblpaqnw"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-pytest python-setuptools python-setuptools-scm))
+     (list python-pytest-cov
+           python-setuptools
+           python-setuptools-scm))
     (home-page "http://pyvcd.readthedocs.io/")
     (synopsis "Library to manipulate digital wave files")
     (description
@@ -3805,7 +3513,7 @@ set.")
 (define-public fusesoc
   (package
     (name "fusesoc")
-    (version "2.4.6")
+    (version "2.4.5")
     (source
      (origin
        (method git-fetch)
@@ -3814,7 +3522,7 @@ set.")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "11bmvk10mszv65ws84jmm220ivwn55v8664kkdm9d4m99pryi2kp"))))
+        (base32 "1sw0zl6hjlzp1a0agdl9yp901pih70ppzzss18l8f3jxs6q7jm1n"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -3894,7 +3602,10 @@ Automation}.")
                          #$output "/share/info/hdlmake-figures")))))
       #:test-flags #~(list "test_all.py")))
     (native-inputs
-     (list python-pytest python-setuptools python-sphinx texinfo))
+     (list python-pytest-cov
+           python-setuptools
+           python-sphinx
+           texinfo))
     (propagated-inputs (list python-networkx))
     (home-page "https://ohwr.gitlab.io/project/hdl-make/")
     (synopsis "Generate multi-purpose makefiles for HDL projects")
@@ -4057,9 +3768,18 @@ design.")
       ;; Tests are expensive and may introduce race condition on systems with
       ;; high (more than 16) threads count; limit parallel jobs to 8x.
       #~(list
-         "--numprocesses" (number->string (min 8 (parallel-job-count))))))
+         "--numprocesses" (number->string (min 8 (parallel-job-count))))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'pathch-pytest-options
+            (lambda _
+              (substitute* "pyproject.toml"
+                ((".*--cov=.*") "")
+                ((".*--self-contained-html.*") "")
+                ((".*-n.*auto.*") "")))))))
     (native-inputs
-     (list python-pytest
+     (list python-pytest-cov
+           python-pytest-html
            python-pytest-xdist
            python-setuptools))
     (propagated-inputs
@@ -4071,36 +3791,6 @@ design.")
 to enforce it.")
     (license license:gpl3+)))
 
-(define-public python-pyxhdl
-  (package
-    (name "python-pyxhdl")
-    (version "0.53")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/davidel/pyxhdl")
-              (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "16dqqhbg5q6fxlhnfcjimxv1zgziw5g46askjhfg8g2hn7i3vfal"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:test-backend #~'custom
-      #:test-flags #~(list "tests/test_runner.py")))
-    (native-inputs
-     (list python-setuptools))
-    (propagated-inputs
-     (list python-numpy python-misc-utils))
-    (home-page "https://github.com/davidel/pyxhdl")
-    (synopsis
-     "Python frontend for @acronym{HDL, Hardware Description Languages}")
-    (description
-     "PyXHDL replaces HDL code by Python, generating VHDL (>= 2008) and
-Verilog (SystemVerilog >= 2012) code to be used for synthesis and simulation.")
-    (license license:asl2.0)))
-
 (define-public python-vunit
   (package
     (name "python-vunit")
@@ -4189,71 +3879,6 @@ automated testing of HDL code.")
     ;; subdirectories are under ASL.
     (license (list license:mpl2.0 license:asl2.0))))
 
-(define-public qcsxcad
-  (package
-    (name "qcsxcad")
-    (version "0.6.3")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/thliebig/QCSXCAD")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0ag1shyhsmfsvqm35fi2kfnbcngmln8rjsv88f97gyx9wiqc808y"))))
-    (build-system qt-build-system)
-    (arguments
-     (list
-      #:tests? #f ;No tests.
-      #:qtbase qtbase ;For Qt 6
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'fix-sources
-            ;; Fix missing `std::`-prefix and missing include.
-            ;; This is fixed in upstream but not tagged with a version.
-            (lambda _
-              (substitute* "vtkInteractorStyleRubberBand2DPlane.cpp"
-                (("#include \"vtkCamera.h\"")
-                 "#include <iostream>\n#include \"vtkCamera.h\"")
-                (("\tcerr ")
-                 "\tstd::cerr "))
-              (substitute* "VTKPrimitives.cpp"
-                (("#include \"VTKPrimitives.h\"")
-                 "#include <iostream>\n#include \"VTKPrimitives.h\"")
-                (("\tcerr ")
-                 "\tstd::cerr ")
-                (("\tcout ")
-                 "\tstd::cout "))
-              (substitute* "QVTKStructure.cpp"
-                (("#include \"QVTKStructure.h\"")
-                 "#include <iostream>\n#include \"QVTKStructure.h\"")
-                (("\tcerr ")
-                 "\tstd::cerr ")
-                (("\tcout ")
-                 "\tstd::cout ")))))))
-    (inputs (list boost
-                  cgal
-                  csxcad
-                  eigen
-                  freetype
-                  gmp
-                  libjpeg-turbo
-                  libpng
-                  libtiff
-                  lz4
-                  openmpi
-                  qt5compat
-                  tinyxml
-                  vtk))
-    (home-page "https://github.com/thliebig/QCSXCAD")
-    (synopsis "GUI library for @code{csxcad}")
-    (description
-     "GUI library for @code{csxcad} --- a library for describing geometrical
-    objects and their properties.  This library is used in @code{appcsxcad}
-    which provides a standalone graphical frontend to @{csxcad}.")
-    (license license:lgpl3+)))
-
 (define-public qrouter
   (package
     (name "qrouter")
@@ -4608,7 +4233,7 @@ them usable as simple logic analyzer and/or oscilloscope hardware.")
 (define-public sby
   (package
     (name "sby")
-    (version "0.65")
+    (version "0.64")
     (source
      (origin
        (method git-fetch)
@@ -4617,16 +4242,17 @@ them usable as simple logic analyzer and/or oscilloscope hardware.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "19cvbvg6jjh7lj1sd7jz7yd5wrlswg6dmyajc7kxgl7dd97ivpwy"))))
+        (base32 "0jksspdgq2grk4a80i5yfc9bazfij37wpmrlkvygpz9ys5ny1432"))))
     (build-system gnu-build-system)
     (arguments
      (list
       #:parallel-tests? #f
       #:test-target "test"
-      #:imported-modules %pyproject-build-system-modules
       #:modules `((guix build gnu-build-system)
-                  ((guix build pyproject-build-system) #:prefix python:)
+                  ((guix build python-build-system) #:prefix python:)
                   (guix build utils))
+      #:imported-modules `(,@%default-gnu-imported-modules
+                           (guix build python-build-system))
       #:make-flags #~(list (string-append "PREFIX=" #$output))
       #:phases
       #~(modify-phases %standard-phases
@@ -5039,7 +4665,7 @@ parallel computing platforms.  It also supports serial execution.")
 (define-public yosys
   (package
     (name "yosys")
-    (version "0.65")
+    (version "0.64")
     (source
      (origin
        (method git-fetch)
@@ -5047,16 +4673,15 @@ parallel computing platforms.  It also supports serial execution.")
               (url "https://github.com/YosysHQ/yosys")
               (commit (string-append "v" version))))
        (sha256
-        (base32 "04sks9hj8h9vy6zii29zjgq38h2h4nz8a7xxiq33p1aivwq7bz8q"))
+        (base32 "13gw5msk1kv05jkb330nybvx2s0ixm6l6mdpyapnqmv3lkhby1mj"))
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (outputs '("out" "doc"))
     (arguments
      (list
-      #:test-target "all"
+      #:test-target "vanilla-test"  ;TODO: restore to "test" with next release
       #:make-flags
       #~(list (string-append "PREFIX=" #$output)
-              "ENABLE_FUNCTIONAL_TESTS=1"
               "ENABLE_EDITLINE=1"
               "ENABLE_LIBYOSYS=1"
               "ENABLE_PYOSYS=1"
@@ -5071,11 +4696,6 @@ parallel computing platforms.  It also supports serial execution.")
                       #$(this-package-input "abc-yosyshq")))
       #:phases
       #~(modify-phases %standard-phases
-          ;; TODO: Remove when fixed.
-          (add-after 'unpack 'remove-aiger
-            (lambda _
-              (substitute* "tests/Makefile"
-                ((".*aiger.*") ""))))
           (add-before 'configure 'fix-paths
             (lambda* (#:key inputs #:allow-other-keys)
               (substitute* "backends/smt2/smtio.py"
@@ -5166,12 +4786,12 @@ parallel computing platforms.  It also supports serial execution.")
               (git-reference
                 (url "https://github.com/povik/yosys-slang")
                 ;; No tags, nor releases.
-                (commit "cf20b1ba0d2c9df0508f927930a87565e7e0d220")
+                (commit "4e53d772996184b07e9bfe784060f96e6cb0a267")
                 (recursive? #t)))  ;requires slang and fmt
              (file-name "yosys-slang")
              (sha256
               (base32
-               "1rl9i19a90yis33g549ida7lygfh1qka5k96zdrvk0shn2jnm8g4")))))
+               "1jjr1b6xd1sr9fkyfyl4y2wkzl51m7g10bw97mnw81v2mzssrs2q")))))
     ;; Optional dependencies increase considerably package closure.
     ;; - gtkwave: required only for vcd2fst binary, used by ‘sim’ command.
     ;; - graphviz, xdot: used by ‘show’ command to display schematics.
@@ -5202,7 +4822,7 @@ for various application domains, including FPGAs and ASICs.")
               license:expat
               ;; yosys-slang/third_party/fmt
               license:bsd-2 license:bsd-3 license:psfl
-              ;; yosys, yosys-slang
+              ;; yosys
               license:isc))))
 
 (define-deprecated-package yosys-clang yosys)

gnu/packages/emacs.scm

@@ -702,8 +702,8 @@ editor (with wide ints)" )
         #~(cons "--with-wide-int" #$flags))))))
 
 (define-public emacs-next-minimal
-  (let ((commit "d969185878bf50faedbafbd609c361875b891b53")
-        (revision "3"))
+  (let ((commit "509228fc6c026921c67459f21164e0325efc583b")
+        (revision "2"))
   (package
     (inherit emacs-minimal)
     (name "emacs-next-minimal")
@@ -717,7 +717,7 @@ editor (with wide ints)" )
              (commit commit)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1pmx71b6pazjpyfs1d2ngby1idsviwbap3xbr5b7dgf0rngim32s"))
+        (base32 "04aalyrx5jysk5fhlka98fhfx23sy99zp8j16i0ils20sflyig6n"))
        (patches
         (search-patches "emacs-next-disable-jit-compilation.patch"
                         "emacs-next-exec-path.patch"

gnu/packages/embedded.scm

@@ -45,6 +45,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system trivial)
   #:use-module ((guix build utils) #:select (alist-replace delete-file-recursively))
   #:use-module (gnu packages)
@@ -1919,7 +1920,7 @@ and Zilog Z80 families, plus many of their variants.")
 (define-public python-psptool
   (package
     (name "python-psptool")
-    (version "3.6")
+    (version "3.1")
     (source
      (origin
        (method git-fetch)
@@ -1928,40 +1929,36 @@ and Zilog Z80 families, plus many of their variants.")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1s53bqimh1ih0xqmyppm2ikphi8r9492k67kn4pz3jngh2gp1wnf"))))
+        (base32 "1fbx3b42cr7dv07p2b9qgzrgs19i066ysfasgvlfjscg2v68j8d0"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:test-backend #~'unittest))
     (native-inputs
-     (list python-hatch-vcs
-           python-hatchling
-           python-psptrace-bootstrap
+     (list python-psptrace-bootstrap
            python-setuptools))
     (propagated-inputs
      (list python-cryptography
            python-prettytable))
     (home-page "https://github.com/PSPReverse/psptool")
     (synopsis "Tool for dealing with AMD binary blobs")
-    (description "PSPTool is a tool for dealing with AMD binary blobs.")
+    (description "PSPTool is a tool for dealing with AMD binary blobs")
     (license license:gpl3+)))
 
 (define-public python-psptrace
   (package
     (name "python-psptrace")
-    (version "0.11")
+    (version "0.7")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "psptrace" version))
        (sha256
-        (base32 "0lzv0dy2m5g6q4rpjd4wpw0p7n8v8crkx7akbp53lpy1c6y40iw8"))))
+        (base32 "1mrympnpkkns2dxq34h9x9qn667ihdvbbf0wpmbp3jli0n7bj7ih"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:tests? #f)) ;no tests in PyPI or Git
     (native-inputs
-     (list python-hatch-vcs
-           python-hatchling
-           python-setuptools))
+     (list python-setuptools))
     (propagated-inputs
      (list python-prettytable
            python-psptool))
@@ -2036,7 +2033,13 @@ whereas kdmx creates pseudo-ttys.")
       ;; tests: 631 passed, 27 skipped, 1 warning
       #:test-flags
       ;; E   ModuleNotFoundError: No module named 'mbed_tools_ci_scripts'
-      #~(list "--ignore=tests/ci_scripts/test_sync_board_db.py")))
+      #~(list "--ignore=tests/ci_scripts/test_sync_board_db.py")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-pytest-config
+            (lambda _
+              (substitute* "pytest.ini"
+                (("addopts = .*") "")))))))
     (native-inputs
      (list python-factory-boy
            python-pytest

gnu/packages/emulators.scm

@@ -140,6 +140,7 @@
   #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system trivial))
@@ -147,7 +148,7 @@
 (define-public ares
   (package
     (name "ares")
-    (version "147")
+    (version "145")
     (source
      (origin
        (method git-fetch)
@@ -156,28 +157,23 @@
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1b4xixngp8md2ishf3cyfwpzjcsvjb5zp678can5dcmv9z1dlsis"))
-       (modules '((guix build utils)))
-       (snippet
-        ;; Delete non-free blobs: Supersoft Diagnostics II.
-        #~(delete-file-recursively "tests/i8080/tests"))))
+        (base32 "074kkgrbiga7grkwhnhw51ih7krxgf91m9zrrwjkj4q1hdjhlz5a"))))
     (build-system cmake-build-system)
     (arguments
-     (list
-      #:tests? #f                       ; non-free blobs
-      #:configure-flags
-      #~(list "-DARES_BUILD_LOCAL=FALSE"
-              "-DARES_BUILD_OFFICIAL=TRUE"
-              "-DARES_BUNDLE_SHADERS=FALSE"
-              "-DARES_SKIP_DEPS=TRUE"
-              (string-append "-DARES_VERSION_OVERRIDE=" #$version))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'avoid-libglvnd
-            (lambda _
-              ;; TODO: Our mesa doesn't have libglvnd support.
-              (substitute* "ruby/cmake/os-linux.cmake"
-                (("OpenGL::GLX") "OpenGL::GL")))))))
+     (list #:tests? #f                  ; No tests
+           #:configure-flags
+           #~(list "-DARES_BUILD_LOCAL=FALSE"
+                   "-DARES_BUILD_OFFICIAL=TRUE"
+                   "-DARES_BUNDLE_SHADERS=FALSE"
+                   "-DARES_SKIP_DEPS=TRUE"
+                   (string-append "-DARES_VERSION_OVERRIDE=" #$version))
+           #:phases
+           #~(modify-phases %standard-phases
+               (add-after 'unpack 'avoid-libglvnd
+                 (lambda _
+                   ;; XXX: Our mesa doesn't have libglvnd support.
+                   (substitute* "ruby/cmake/os-linux.cmake"
+                     (("OpenGL::GLX") "OpenGL::GL")))))))
     (native-inputs
      (list pkg-config))
     (inputs

gnu/packages/enchant.scm

@@ -41,6 +41,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix licenses)
   #:use-module (srfi srfi-1))
 

gnu/packages/engineering.scm

@@ -33,7 +33,7 @@
 ;;; Copyright © 2022 Peter Polidoro <peter@polidoro.io>
 ;;; Copyright © 2022 Malte Frank Gerdes <malte.f.gerdes@gmail.com>
 ;;; Copyright © 2022 Greg Hogan <code@greghogan.com>
-;;; Copyright © 2022, 2024-2026 Artyom V. Poptsov <poptsov.artyom@gmail.com>
+;;; Copyright © 2022, 2024, 2025 Artyom V. Poptsov <poptsov.artyom@gmail.com>
 ;;; Copyright © 2022, 2025 Maxim Cournoyer <maxim@guixotic.coop>
 ;;; Copyright © 2022, 2023, 2025 Felix Gruber <felgru@posteo.net>
 ;;; Copyright © 2023 Theofilos Pechlivanis <theofilos.pechlivanis@gmail.com>
@@ -46,7 +46,7 @@
 ;;; Copyright © 2025 Matthew Elwin <elwin@northwestern.edu>
 ;;; Copyright © 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2025 Remco van 't Veer <remco@remworks.net>
-;;; Copyright © 2025-2026 bdunahu <bdunahu@operationnull.com>
+;;; Copyright © 2025 bdunahu <bdunahu@operationnull.com>
 ;;; Copyright © 2026 Cayetano Santos <csantosb@inventati.org>
 ;;; Copyright © 2026 Daniel Khodabakhsh <d@niel.khodabakh.sh>
 ;;; Copyright © 2026 Spencer King <spencer.king@wustl.edu>
@@ -77,6 +77,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix download)
   #:use-module (guix gexp)
@@ -437,8 +438,9 @@ optimizer; and it can produce photorealistic and design review images.")
                 "0x37vfp6k0d2z3gnig0hbicvi0jp8v267xjnn3z8jdllpiaa6p3k"))
               (snippet
                ;; Remove a non-free file.
-               #~(begin
-                   (delete-file "doc/psfig.sty")))
+               '(begin
+                  (delete-file "doc/psfig.sty")
+                  #t))
               (patches (search-patches "fastcap-mulSetup.patch"
                                        "fastcap-mulGlobal.patch"))))
     (build-system gnu-build-system)
@@ -448,93 +450,79 @@ optimizer; and it can produce photorealistic and design review images.")
      ;; LaTeX Warning: Citation `nabors91' on page 2 undefined on input line
      ;; 3.
      `(("texlive" ,(texlive-local-tree))
-       ("ghostscript" ,ghostscript)
-       ("libfaketime" ,libfaketime)))
+       ("ghostscript" ,ghostscript)))
     (arguments
-     (list
-      #:make-flags #~(list "CC=gcc" "RM=rm" "SHELL=sh"
-                           (string-append
-                            "CFLAGS="
-                            "-Wno-error=implicit-int"
-                            " -Wno-error=return-mismatch"
-                            " -Wno-error=implicit-function-declaration")
-                           "all")
+     `(#:make-flags '("CC=gcc" "RM=rm" "SHELL=sh" "all")
        #:parallel-build? #f
        #:tests? #f ;; no tests-suite
-       #:modules `((srfi srfi-1)
-                   ,@%default-gnu-modules)
+       #:modules ((srfi srfi-1)
+                  ,@%default-gnu-modules)
        #:phases
-       #~(modify-phases %standard-phases
-           (add-after 'build 'make-doc
-             (lambda _
-               (invoke "faketime"
-                       "1970-01-01 00:00:00"
-                       "make" "CC=gcc" "RM=rm" "SHELL=sh" "manual")))
-           (add-before 'make-doc 'fix-doc
-             (lambda _
-               (substitute* "doc/Makefile" (("/bin/rm") (which "rm")))
-               (substitute* (find-files "doc" "\\.tex")
-                 (("\\\\special\\{psfile=([^,]*),.*scale=([#0-9.]*).*\\}"
-                   all file scale)
-                  (string-append "\\includegraphics[scale=" scale "]{"
-                                 file "}"))
-                 (("\\\\psfig\\{figure=([^,]*),.*width=([#0-9.]*in).*\\}"
-                   all file width)
-                  (string-append "\\includegraphics[width=" width "]{"
-                                 file "}"))
-                 (("\\\\psfig\\{figure=([^,]*),.*height=([#0-9.]*in).*\\}"
-                   all file height)
-                  (string-append "\\includegraphics[height=" height "]{"
-                                 file "}"))
-                 (("\\\\psfig\\{figure=([^,]*)\\}" all file)
-                  (string-append "\\includegraphics{" file "}")))
-               (substitute* '("doc/mtt.tex" "doc/tcad.tex" "doc/ug.tex")
-                 (("^\\\\documentstyle\\[(.*)\\]\\{(.*)\\}"
-                   all options class)
-                  (string-append "\\documentclass[" options "]{"
-                                 class "}\n"
-                                 "\\usepackage{graphicx}\n"
-                                 "\\usepackage{robinspace}"))
-                 (("\\\\setlength\\{\\\\footheight\\}\\{.*\\}" all)
-                  (string-append "%" all))
-                 (("\\\\setstretch\\{.*\\}" all)
-                  (string-append "%" all)))))
-           (delete 'configure)
-           (add-before 'install 'clean-bin
-             (lambda _
-               (delete-file (string-append (getcwd) "/bin/README"))))
-           (add-before 'install 'make-pdf
-             (lambda _
-               (setenv "TEXMFVAR" "/tmp")     ;For texlive font cache
-               (with-directory-excursion "doc"
-                 (for-each (lambda (file)
-                             (invoke "faketime"
-                                     "-f"
-                                     "1970-01-01 00:00:00"
-                                     "dvips" file "-o"))
-                           (find-files "." "\\.dvi"))
-                 (for-each (lambda (file)
-                             (invoke "faketime"
-                                     "-f"
-                                     "1970-01-01 00:00:00"
-                                     "ps2pdf" file))
-                           '("mtt.ps" "ug.ps" "tcad.ps"))
-                 (invoke "make" "clean"))))
-           (replace 'install
-             (lambda _
-               (let* ((data (string-append #$output "/share"))
-                      (bin (string-append #$output "/bin"))
-                      (doc (string-append data "/doc/" #$name "-" #$version))
-                      (examples (string-append doc "/examples")))
-                 (with-directory-excursion "bin"
-                   (for-each (lambda (f)
-                               (install-file f bin))
-                             (find-files "." ".*")))
-                 (with-directory-excursion "doc"
-                   (for-each (lambda (f)
-                               (install-file f doc))
-                             (find-files "." ".pdf")))
-                 (copy-recursively "examples" examples)))))))
+       (modify-phases %standard-phases
+         (add-after 'build 'make-doc
+           (lambda _
+             (invoke "make" "CC=gcc" "RM=rm" "SHELL=sh" "manual")))
+         (add-before 'make-doc 'fix-doc
+           (lambda _
+             (substitute* "doc/Makefile" (("/bin/rm") (which "rm")))
+             (substitute* (find-files "doc" "\\.tex")
+               (("\\\\special\\{psfile=([^,]*),.*scale=([#0-9.]*).*\\}"
+                 all file scale)
+                (string-append "\\includegraphics[scale=" scale "]{"
+                               file "}"))
+               (("\\\\psfig\\{figure=([^,]*),.*width=([#0-9.]*in).*\\}"
+                 all file width)
+                (string-append "\\includegraphics[width=" width "]{"
+                               file "}"))
+               (("\\\\psfig\\{figure=([^,]*),.*height=([#0-9.]*in).*\\}"
+                 all file height)
+                (string-append "\\includegraphics[height=" height "]{"
+                               file "}"))
+               (("\\\\psfig\\{figure=([^,]*)\\}" all file)
+                (string-append "\\includegraphics{" file "}")))
+             (substitute* '("doc/mtt.tex" "doc/tcad.tex" "doc/ug.tex")
+               (("^\\\\documentstyle\\[(.*)\\]\\{(.*)\\}"
+                 all options class)
+                (string-append "\\documentclass[" options "]{"
+                               class "}\n"
+                               "\\usepackage{graphicx}\n"
+                               "\\usepackage{robinspace}"))
+               (("\\\\setlength\\{\\\\footheight\\}\\{.*\\}" all)
+                (string-append "%" all))
+               (("\\\\setstretch\\{.*\\}" all)
+                (string-append "%" all)))
+             #t))
+         (delete 'configure)
+         (add-before 'install 'clean-bin
+           (lambda _
+             (delete-file (string-append (getcwd) "/bin/README"))
+             #t))
+         (add-before 'install 'make-pdf
+           (lambda _
+             (setenv "TEXMFVAR" "/tmp")     ;For texlive font cache
+             (with-directory-excursion "doc"
+               (and
+                (for-each (lambda (file)
+                            (invoke "dvips" file "-o"))
+                          (find-files "." "\\.dvi"))
+                (for-each (lambda (file)
+                            (invoke "ps2pdf" file))
+                          '("mtt.ps" "ug.ps" "tcad.ps"))
+                (invoke "make" "clean")))))
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (data (string-append out "/share"))
+                    (bin (string-append out "/bin"))
+                    (doc (string-append data "/doc/" ,name "-" ,version))
+                    (examples (string-append doc "/examples")))
+               (with-directory-excursion "bin"
+                 (for-each (lambda (f)
+                             (install-file f bin))
+                           (find-files "." ".*")))
+               (copy-recursively "doc" doc)
+               (copy-recursively "examples" examples)
+               #t))))))
     (home-page "https://www.rle.mit.edu/cpg/research_codes.htm")
     (synopsis "Multipole-accelerated capacitance extraction program")
     (description
@@ -913,65 +901,64 @@ user-level language.")
 
 ;; TODO: Keep in sync with radare2.
 (define-public iaito
-  (package
-    (name "iaito")
-    (version "6.1.4")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/radareorg/iaito")
-                     (commit version)))
-              (sha256
-               (base32
-                "16sp73k6ighjwp80nvf55lwzv0fb8p4ki76mnsc8xhl3vq7pka0w"))
-              (file-name (git-file-name name version))))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:tests? #f ;no tests
-      #:modules '((guix build gnu-build-system) (guix build qt-utils)
-                  (guix build utils))
-      #:imported-modules `((guix build qt-utils)
-                           ,@%default-gnu-imported-modules)
-      #:phases
-      #~(modify-phases %standard-phases
-          ;; The build system assumes the sdb lib is installed alongside
-          ;; radare2. We already patch the radare2 package to use a
-          ;; system-installed sdb rather than install its own, so we must
-          ;; propagate those changes here.
-          (add-before 'configure 'add-sdb-libs
-            (lambda _
-              (substitute* '("./src/lib_radare2.pri")
-                (("pkg-config --libs r_core" all)
-                 (string-append all " sdb")))))
-          (add-after 'install 'wrap-qt
-            (lambda* (#:key inputs outputs #:allow-other-keys)
-              (wrap-all-qt-programs #:outputs outputs
-                                    #:inputs inputs
-                                    #:qtbase (assoc-ref inputs "qtbase")))))))
-    (inputs
-     (list capstone
-           libuv
-           libzip
-           lz4
-           openssl
-           qtbase
-           qtsvg
-           qtwayland
-           radare2
-           sdb))
-    (native-inputs
-     (list pkg-config python-minimal-wrapper))
-    (native-search-paths (list (search-path-specification
-                                 (variable "R2_LIBR_PLUGINS")
-                                 (files (list "lib/radare2"))
-                                 (separator #f)))) ;single value
-    (home-page "https://github.com/radareorg/iaito")
-    (synopsis "Official radare2 GUI")
-    (description "Iaito is the official graphical interface for radare2, a
+  ;; Commit "Release 6.1.2"
+  (let ((commit "790878048ecb62f4d2f1b5f848948059dd5bb8fe")
+        (revision "1"))
+    (package
+      (name "iaito")
+      (version (git-version "6.1.2" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                       (url "https://github.com/radareorg/iaito")
+                       (commit commit)))
+                (sha256
+                 (base32
+                  "00nqn3mx2fj5higz4niwl0nx04vnjwzccw6zjx3rhwf6fj5yfamm"))
+                (file-name (git-file-name name version))))
+      (build-system gnu-build-system)
+      (arguments
+       (list
+        #:tests? #f ;no tests
+        #:modules '((guix build gnu-build-system) (guix build qt-utils)
+                    (guix build utils))
+        #:imported-modules `((guix build qt-utils)
+                             ,@%default-gnu-imported-modules)
+        #:phases
+        #~(modify-phases %standard-phases
+            ;; The build system assumes the sdb lib is installed alongside
+            ;; radare2. We already patch the radare2 package to use a
+            ;; system-installed sdb rather than install its own, so we must
+            ;; propagate those changes here.
+            (add-before 'configure 'add-sdb-libs
+              (lambda _
+                (substitute* '("./src/lib_radare2.pri")
+                  (("pkg-config --libs r_core" all)
+                   (string-append all " sdb")))))
+            (add-after 'install 'wrap-qt
+              (lambda* (#:key inputs outputs #:allow-other-keys)
+                (wrap-all-qt-programs #:outputs outputs
+                                      #:inputs inputs
+                                      #:qtbase (assoc-ref inputs "qtbase")))))))
+      (inputs
+       (list capstone
+             libuv
+             libzip
+             lz4
+             openssl
+             qtbase
+             qtsvg
+             qtwayland
+             radare2
+             sdb))
+      (native-inputs
+       (list pkg-config python-minimal-wrapper))
+      (home-page "https://github.com/radareorg/iaito")
+      (synopsis "Official radare2 GUI")
+      (description "Iaito is the official graphical interface for radare2, a
 libre reverse engineering framework.  Iaito focuses on simplicity, parity with
 commands, features, and keybindings.")
-    (license license:gpl3+)))
+      (license license:gpl3+))))
 
 (define-public inspekt3d
   (let ((commit "703f52ccbfedad2bf5240bf8183d1b573c9d54ef")
@@ -1055,6 +1042,32 @@ in the context of per-cpu data.  The library offers ABI headers to interface
 with the kernel and various utilities such as per-cpu counters.")
       (license (list license:lgpl2.1 license:expat)))))
 
+(define-public linsmith
+  (package
+    (name "linsmith")
+    (version "0.99.33")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "mirror://sourceforge/linsmith/linsmith/linsmith-"
+                    version "/linsmith-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1629p29casy9pgy8hzva1bmgrvh923qk01ls3anik6zqn6swkjfn"))))
+    (build-system gnu-build-system)
+    (arguments
+     '(#:configure-flags '("CFLAGS=-fcommon")))
+    (native-inputs
+     (list pkg-config))
+    (inputs
+     (list gtk+-2 libgnomeui))
+    (home-page "https://jcoppens.com/soft/linsmith/index.en.php")
+    (synopsis "Smith Charting program")
+    (description "LinSmith is a Smith Charting program, mainly designed for
+educational use.  As such, there is an emphasis on capabilities that improve
+the 'showing the effect of'-style of operation.")
+    (license license:gpl2+)))
+
 (define-public valeronoi
   (package
     (name "valeronoi")
@@ -1227,7 +1240,7 @@ specified in rfc2217 and a (Linux specific) CAN mode.")
 (define-public minicom
   (package
     (name "minicom")
-    (version "2.11.1")
+    (version "2.10")
     (source
      (origin
        (method git-fetch)
@@ -1235,7 +1248,7 @@ specified in rfc2217 and a (Linux specific) CAN mode.")
              (url "https://salsa.debian.org/minicom-team/minicom.git")
              (commit version)))
        (sha256
-        (base32 "15k20qbxrjdxadwzkp31hjy7apdasrsgs532kwmlkpzs92ff4ghs"))
+        (base32 "0sxbyf1li3lsrvkjpn04xz6ywa42ggfc1fhdrmsibfkhqja9abn0"))
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (arguments
@@ -1360,33 +1373,24 @@ determines the frequencies, decay constants, amplitudes, and phases of those sin
 (define-public guile-libctl
   (package
     (name "guile-libctl")
-    (version "4.6.0")
+    (version "4.2.0")
     (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/NanoComp/libctl")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
+              (method url-fetch)
+              (uri
+               (string-append
+                "https://github.com/NanoComp/libctl/releases/download/v"
+                version "/libctl-" version ".tar.gz"))
               (sha256
                (base32
-                "1lsch1qc5w9yyprrvawfwbnz7na4qah0p752kxxv144xp8yq98x7"))))
+                "0x8r56lpfq83kfbq28vr25icl19xpfd6fjrxzcpdmv30l9pash83"))))
     (build-system gnu-build-system)
     (arguments
-     (list #:configure-flags
-           #~(list "--enable-shared")
-           #:phases
-           #~(modify-phases %standard-phases
-               ;; Avoid bin/sh shebang in configure.
-               (add-before 'bootstrap 'no-/bin/sh
-                 (lambda _ (delete-file "autogen.sh"))))))
+      `(#:configure-flags '("--enable-shared")))
     (native-inputs
-     (list autoconf
-           automake
-           libtool
-           gfortran))
+     `(("fortran" ,gfortran)))
     (inputs
-     (list guile-3.0))
-    (home-page "https://libctl.readthedocs.io/en/latest/")
+     (list guile-2.2))
+    (home-page "http://ab-initio.mit.edu/wiki/index.php/Libctl")
     (synopsis "Flexible control files implementation for scientific simulations")
     (description
      "Libctl is a Guile-based library implementing flexible control files
@@ -1396,7 +1400,7 @@ for scientific simulations.")
 (define-public mpb
   (package
     (name "mpb")
-    (version "1.12.0")
+    (version "1.8.0")
     (source (origin
               (method url-fetch)
               (uri
@@ -1405,41 +1409,50 @@ for scientific simulations.")
                 version "/mpb-" version ".tar.gz"))
               (sha256
                (base32
-                "197dm8z5hfikivb73rhywyq976rn1k621bf1admgc5xjaii20awd"))))
+                "1jgrb7dd6qs6j6y1gnxmdgrh79l2bvqa6nk60a4pw1annsks4brd"))))
     (build-system gnu-build-system)
     (arguments
-     (list
-      #:configure-flags
-      #~(list
-         (string-append "--with-libctl="
-                        #$(this-package-input "guile-libctl") "/share/libctl")
-         "--enable-shared")))
+     `(#:configure-flags
+       (list (string-append "--with-libctl="
+                            (assoc-ref %build-inputs "libctl")
+                            "/share/libctl")
+             "--enable-shared")
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'relax-gcc-14-strictness
+           (lambda _
+             (setenv "CFLAGS"
+                     (string-join
+                      (list "-Wno-error=incompatible-pointer-types"
+                            "-Wno-error=implicit-function-declaration"
+                            "-Wno-error=int-conversion")
+                      " ")))))))
     (native-inputs
-     (list gfortran
-           pkg-config
-           swig-4.4))
+     `(("fortran" ,gfortran)
+       ("pkg-config" ,pkg-config)
+       ("swig" ,swig-4.0)))
     (inputs
-     (list fftw
-           gsl
-           guile-3.0
-           guile-libctl
-           hdf5
-           openblas
-           readline
-           zlib))
-    (home-page "https://mpb.readthedocs.io/en/latest/")
+     `(("fftw" ,fftw)
+       ("gsl" ,gsl)
+       ("guile" ,guile-2.2)
+       ("hdf5" ,hdf5)
+       ("openblas" ,openblas)
+       ("libctl" ,guile-libctl)
+       ("readline" ,readline)
+       ("zlib" ,zlib)))
+    (home-page "http://ab-initio.mit.edu/wiki/index.php/MIT_Photonic_Bands")
     (synopsis "Computes band structures and electromagnetic modes of dielectric
 structures")
     (description
-     "MIT Photonic-Bands (MPB) computes definite-frequency eigenstates
-(harmonic modes) of Maxwell's equations in periodic dielectric structures for
-arbitrary wavevectors, using fully-vectorial and three-dimensional methods.")
+     "MIT Photonic-Bands (MPB) computes definite-frequency eigenstates (harmonic modes)
+of Maxwell's equations in periodic dielectric structures for arbitrary wavevectors, using
+fully-vectorial and three-dimensional methods.")
     (license license:gpl2+)))
 
 (define-public meep
   (package
     (name "meep")
-    (version "1.33.0")
+    (version "1.30.1")
     (source (origin
               (method url-fetch)
               (uri
@@ -1448,7 +1461,7 @@ arbitrary wavevectors, using fully-vectorial and three-dimensional methods.")
                 version "/meep-" version ".tar.gz"))
               (sha256
                (base32
-                "1azhgz6s95siqmnxb3if6waxbvia3bij5jmxgxjz4sgn2ahw1axx"))))
+                "1h80d7i7v06fxfdsa496b542dvr105c4v1n7pk8m3jssvbxvv2a0"))))
     (build-system gnu-build-system)
     (arguments
      (list #:configure-flags
@@ -1458,11 +1471,11 @@ arbitrary wavevectors, using fully-vectorial and three-dimensional methods.")
     (native-inputs
      (list gfortran
            pkg-config
-           swig-4.4))
+           swig-4.0))
     (inputs
      (list fftw
            gsl
-           guile-3.0
+           guile-2.2
            guile-libctl
            harminv
            hdf5
@@ -1672,7 +1685,7 @@ multiple services and devices with hundreds of supported integrations.")
 (define-public python-esptool
   (package
     (name "python-esptool")
-    (version "5.2.0")
+    (version "5.0.2")
     (source
      (origin
        (method git-fetch)
@@ -1681,7 +1694,7 @@ multiple services and devices with hundreds of supported integrations.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0rgwa7mimznwkn8ql17yxwxsfp0is3i75y7bf62mgsxjyx7zawcd"))))
+        (base32 "1wl75j6ncm5lahy9pzc38qivhaf9p42a2bijishdkwkw388fs6x1"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -1717,7 +1730,7 @@ bootloader in Espressif ESP8266 & ESP32 series chips.")
 (define-public radare2
   (package
     (name "radare2")
-    (version "6.1.4")                   ;keep in sync with iaito
+    (version "6.1.2")                   ;keep in sync with iaito
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1725,7 +1738,7 @@ bootloader in Espressif ESP8266 & ESP32 series chips.")
                     (commit version)))
               (sha256
                (base32
-                "0gq90rwwmkfc7v1rhyr3lw859rsm1ryhzrwidhhh6pbp6jv03k6w"))
+                "1d4sslhjxm00fchqcszfa59wf51v632jvf7aj4af0vdhl9f9n8k2"))
               (file-name (git-file-name name version))
               (patches
                (search-patches "radare2-fix-meson-build-to-use-sys-sdb.patch"
@@ -1781,10 +1794,6 @@ bootloader in Espressif ESP8266 & ESP32 series chips.")
     (propagated-inputs
      ;; In the Libs: section of r_hash.pc.
      (list xxhash))
-    (native-search-paths (list (search-path-specification
-                                 (variable "R2_LIBR_PLUGINS")
-                                 (files (list "lib/radare2"))
-                                 (separator #f)))) ;single value
     (home-page "https://radare.org/")
     (synopsis "Reverse engineering framework")
     (description
@@ -1802,183 +1811,24 @@ like relocation symbols.  It is able to deal with malformed binaries, making
 it suitable for security research and analysis.")
     (license license:lgpl3)))
 
-(define-public r2ghidra
-  (package
-    (name "r2ghidra")
-    (version "6.1.4")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/radareorg/r2ghidra")
-              (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "04x7vmg67zz0llkz3r3nmcky5z8c4ha31z8jzkm19dnyslw2qlxr"))
-       (modules '((guix build utils)))
-       (snippet
-        ;; Delete bundled libs and remove their references.
-        #~(begin (delete-file-recursively "subprojects")
-                 (substitute* "ghidra/deps.mk"
-                   (("ZLIB_LDFLAGS=.*") "")
-                   (("ZLIB_CFLAGS=.*") ""))
-                 (substitute* "src/Makefile"
-                   (("(all:) subprojects-zlib" _ f) f)
-                   (("PUGIXML_OBJS=.*") "")
-                   (("PUGIXML_SRCS=.*") "")
-                   (("PUGIXML_CFLAGS=.*") ""))))))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:make-flags
-      #~(let* ((zlib #$(this-package-input "zlib"))
-               (pugixml #$(this-package-input "pugixml-next")))
-          (list (string-append "CC=" #$(cc-for-target))
-                (format #f "ZLIB_LDFLAGS=-L~a/lib/ -lz" zlib)
-                (format #f "LDFLAGS=-L~a/lib/ -lpugixml" pugixml)
-                (format #f "ZLIB_CFLAGS=-I~a/include/" zlib)
-                (format #f "PUGIXML_CFLAGS=-I~a/include/" pugixml)
-                ;; Ensure this matches R2_LIBR_PLUGINS as exported
-                ;; by radare2 & iaito.
-                (format #f "PLUGDIR=~a/lib/radare2" #$output)))
-      #:tests? #f    ;no 'check' rule, test dir may require 3rd-party binaries
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'skip-git-and-copy-ghidra
-            (lambda _
-              ;; GIT is assumed to point to the git binary, but it is
-              ;; only checked to be a file; this short-circuits the check.
-              (setenv "GIT" "configure")
-              (copy-recursively
-               (search-input-directory %build-inputs "share/ghidra-native")
-               "subprojects/ghidra-native")))
-          (add-before 'build 'set-system-sleighhome
-            ;; Helper files which try to install in radare2's path
-            ;; in the store, irrespective of PLUGDIR.  As long as
-            ;; r2ghidra knows where to find them, we can place them
-            ;; anywhere.
-            (lambda _
-              (let ((sleighhome
-                     (in-vicinity #$output "lib/radare2/sleighhome")))
-                ;; Hardcoded path to check.
-                (substitute* "src/SleighAsm.cpp"
-                  (("(path = strdup \\()[^\\)]*" _ f)
-                   (string-append f "\"" sleighhome "\"")))
-                ;; Install location.
-                (substitute* "ghidra/Makefile"
-                  (("(sleigh-install D=\")\\$\\(DD\\)" _ f)
-                   (string-append f sleighhome)))))))))
-    (inputs
-     (list capstone
-           libuv
-           libzip
-           lz4
-           openssl
-           pugixml-next
-           radare2
-           sdb
-           zlib))
-    (native-inputs
-     (list ghidra-native
-           pkg-config
-           python-minimal))
-    (home-page "https://www.radare.org/")
-    (synopsis "Native Ghidra Decompiler for radare2")
-    (description
-     "r2ghidra is a radare2 plugin which integrates the
- @url{https://www.nsa.gov/ghidra,Ghidra} decompiler.")
-    ;; Specified lgpl3 'only' in README.
-    (license license:lgpl3)))
-
-(define-public ghidra-native
-  ;; Latest commit; last release (8/2025) incompatible with current r2ghidra.
-  (let ((commit "df065bad0f9e7cea233479048681f811c4f640a2")
-        (revision "1"))
-    (package
-      (name "ghidra-native")
-      (version (git-version "0.6.2" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-                (url "https://github.com/radareorg/ghidra-native")
-                (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "14bzrl856x3bsqjpks85rzxcxncfmnjwc5knv2h4lybfz4bxcn39"))))
-      (build-system gnu-build-system)
-      (arguments
-       (list
-        #:tests? #f                     ;no tests
-        #:make-flags #~(list "patch")
-        #:phases
-        #~(modify-phases %standard-phases
-            (delete 'configure)
-            (replace 'install           ;no install target
-              (lambda _
-                (let ((ghidra-native-patched
-                       (in-vicinity #$output "/share/ghidra-native/src")))
-                  (copy-recursively "src" ghidra-native-patched)))))))
-      (home-page "https://www.radare.org/")
-      (synopsis "Native parts of ghidra")
-      (description
-       "This package contains the native parts of ghidra, to be used from
-r2ghidra.")
-      (properties '((hidden? . #t)))    ;only provides source files
-      (license license:asl2.0))))
-
 (define-public rayforge
   (package
     (name "rayforge")
-    (version "1.7.7")   ;newer version requires python-raygeo (Rust)
+    (version "1.0.2")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
-              (url "https://github.com/barebaric/rayforge")
-              (commit version)))
+             (url "https://github.com/barebaric/rayforge")
+             (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1w44qw51nynf1rk61y0d0wj6xl66ciswpcsp38dnwrpfwsqgafxw"))))
+        (base32 "1c6dl0x3pafmh4p533jbk2cj73q90vz1797jya3hzzxdv0h383yc"))))
     (build-system pyproject-build-system)
-    (arguments
-     (list
-      ;; tests: 1626 passed
-      #:test-flags
-      ;; XXX: Tests fail to pick exact version of cairo: E gi.RepositoryError:
-      ;; Typelib file for namespace 'cairo', version '1.0' not found
-      #~(list "--ignore=tests/core/geo/test_font_config.py"
-              "--ignore=tests/core/geo/test_geo_text.py"
-              "--ignore=tests/core/geo/test_geometry.py"
-              "--ignore=tests/core/geo/test_text.py"
-              "--ignore=tests/core/geo/test_transform.py"
-              ;; XXX: Projects ships a huge test suite which the majority
-              ;; fail, run bare minimal core tests.
-              "tests/core")
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'relax-requirements
-            (lambda _
-              ;; All of the dependencies are pined to exact version.
-              (substitute* "requirements.txt"
-                (("[=~]=.*") "\n")
-                ;; XXX: Guix's opencv package does not provide Python's
-                ;; version metadata.
-                (("opencv_python") ""))))
-          (add-before  'sanity-check 'set-home
-            (lambda _
-              (setenv "HOME" "/tmp")))
-          (add-before 'check 'remove-local-source
-            (lambda _
-              (delete-file-recursively "rayforge")))
-          (add-after 'wrap 'wrap-rayforge
-            (lambda _
-              (wrap-program (string-append #$output "/bin/rayforge")
-                `("GI_TYPELIB_PATH" ":" prefix
-                  (,(getenv "GI_TYPELIB_PATH")))))))))
     (native-inputs (list python-gitpython
                          python-pytest
                          python-pytest-asyncio
+                         python-pytest-cov
                          python-pytest-mock
                          python-setuptools))
     (inputs (list bash-minimal
@@ -1988,27 +1838,54 @@ r2ghidra.")
                   python-asyncudp
                   python-blinker
                   python-ezdxf
-                  python-gitpython
                   python-numpy
                   python-platformdirs
-                  python-pluggy
                   python-pycairo
                   python-pyclipper
                   python-pygobject
-                  python-pymupdf
                   python-pyopengl
                   python-pyopengl-accelerate
                   python-pypdf
-                  python-pyserial
+                  python-pyserial-asyncio
                   python-pyvips
                   python-pyyaml
                   python-scipy
                   python-semver
                   python-svgelements
-                  python-trimesh
                   python-websockets
                   vtracer))
-    (home-page "https://rayforge.org/")
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'write-version-file
+            (lambda _
+              (call-with-output-file "rayforge/version.txt"
+                (lambda (port)
+                  (display #$version port)))
+              (let ((port (open-file "MANIFEST.in" "a")))
+                (display "include rayforge/version.txt\n" port)
+                (close-port port))))
+          (add-after 'unpack 'fix-tests
+            (lambda _
+              (mkdir "tmp-home")
+              (setenv "HOME"
+                      (string-append (getcwd) "/tmp-home"))
+              ;; Fix abstract class test for older Python error message format
+              (substitute* "tests/pipeline/stage/test_base_stage.py"
+                (("without an implementation for abstract method 'reconcile'")
+                 "abstract method '?reconcile'?"))
+              ;; Fix arc fitting test: add looser tolerance for floating point comparison
+              (substitute* "tests/core/geo/test_fitting.py"
+                (("(assert np\\.allclose\\(.*, \\(-10\\.0, 0\\.0\\))" match)
+                 (string-append match ", atol=1e-3")))))
+          (delete 'sanity-check) ; Tests against python package version of rayforge
+          (add-after 'wrap 'wrap-rayforge
+            (lambda _
+              (wrap-program (string-append #$output "/bin/rayforge")
+                `("GI_TYPELIB_PATH" ":" prefix
+                  (,(getenv "GI_TYPELIB_PATH")))))))))
+    (home-page "https://github.com/barebaric/rayforge")
     (synopsis "Desktop application for laser cutting and engraving")
     (description
      "Rayforge is a cross-platform 2D CAD and G-code control software designed
@@ -2134,7 +2011,7 @@ high-performance parallel differential evolution (DE) optimization algorithm.")
 (define-public gpx
   (package
     (name "gpx")
-    (version "2.6.8")
+    (version "2.5.2")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -2143,7 +2020,7 @@ high-performance parallel differential evolution (DE) optimization algorithm.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1izs8s5npkbfrsyk17429hyl1vyrbj9dp6vmdlbb2vh6mfgl54h8"))))
+                "1yab269x8qyf7rd04vaxyqyjv4pzz9lp4sc4dwh927k23avr3rw5"))))
     (build-system gnu-build-system)
     (home-page "https://github.com/markwal/GPX")
     (synopsis "Converting gcode to x3g files for 3D printing")
@@ -2258,7 +2135,7 @@ specification can be downloaded at @url{http://3mf.io/specification/}.")
 (define-public manifold
   (package
     (name "manifold")
-    (version "3.4.1")
+    (version "3.3.2")
     (source
      (origin
        (method git-fetch)
@@ -2267,7 +2144,7 @@ specification can be downloaded at @url{http://3mf.io/specification/}.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0x65708r6xln8sd53abbn1qnhz3wxnicn2837ida73ihargk5js1"))))
+        (base32 "0bq1gzvhyp0b9v0q6magwf0yi9lzqgh3fj9104wqfvpl2skgzkg7"))))
     (build-system cmake-build-system)
     (inputs (list onetbb clipper2 assimp python-nanobind googletest))
     (arguments
@@ -2490,6 +2367,7 @@ Newton-Raphson power flow solvers in the C++ library lightsim2grid, and the
                          python-networkx
                          python-openpyxl
                          python-pytest
+                         python-pytest-cov ; --cov runs by default on skrf
                          python-pytest-mock
                          python-pyvisa
                          python-setuptools
@@ -2764,7 +2642,7 @@ but also adds new features and improves existing ones.")
 (define-public emacs-scad-mode
   (package
     (name "emacs-scad-mode")
-    (version "99.0")
+    (version "98.0")
     (source
      (origin
        (method git-fetch)
@@ -2772,10 +2650,9 @@ but also adds new features and improves existing ones.")
              (url "https://github.com/openscad/emacs-scad-mode")
              (commit version)))
        (sha256
-        (base32 "0mqfvff8f7lqjviwz30j7vkb098xd0k8bdzznb77aw4q7gdsf8nm"))
+        (base32 "19mn6z98c8s7mspa7j8xw7za33gmpsy4iw2r9xiggdv7yh6mh8h8"))
        (file-name (git-file-name name version))))
     (build-system emacs-build-system)
-    (arguments (list #:tests? #f))    ; no tests
     (propagated-inputs (list emacs-compat))
     (synopsis "Emacs mode to edit OpenSCAD files")
     (description
@@ -3024,22 +2901,20 @@ interpolation toolkit.")
 (define-public python-motulator
   (package
     (name "python-motulator")
-    (version "0.6.2")
+    (version "0.5.0")
     (source
      (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/Aalto-Electric-Drives/motulator/")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
+       (method url-fetch)
+       (uri (pypi-uri "motulator" version))
        (sha256
-        (base32 "1di2r1i19jl751v0hj426zkwk48w5yf8zpw2bl6qzk0vq4z2vpbw"))))
+        (base32 "1kh13zfa4w73q04pny2w2zgym47fp8xy7glwfx82fdx4fihk7dv7"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:tests? #f)) ; there are no tests
-    (propagated-inputs
-     (list python-numpy python-matplotlib python-scipy python-tqdm))
-    (native-inputs (list python-hatchling))
+    (propagated-inputs (list python-matplotlib python-numpy python-scipy))
+    (native-inputs (list python-hatchling
+                         python-ipykernel
+                         python-toml))
     (home-page "https://aalto-electric-drives.github.io/motulator/")
     (synopsis "Motor Drive Simulator in Python")
     (description "This package includes simulation models for an induction
@@ -3052,7 +2927,7 @@ Runge-Kutta method of order 5(4) from @code{scipy.integrate.solve_ivp.}")
 (define-public cgns
   (package
     (name "cgns")
-    (version "4.5.2")
+    (version "4.3.0")
     (source
      (origin
        (method git-fetch)
@@ -3061,7 +2936,7 @@ Runge-Kutta method of order 5(4) from @code{scipy.integrate.solve_ivp.}")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0r8y6lddp7q9nb6804c6bbr4y0pv7ssdzi9m5ddx50ksvfv382fw"))))
+        (base32 "0jig1y7lv9qk1ri2gqws7ffpajmhxnank7gbyna9hfaghsxdlnvd"))))
     (build-system cmake-build-system)
     (arguments
      (list #:configure-flags
@@ -4094,7 +3969,7 @@ G-codes to binary and vice versa.")
      (list bash-minimal
            boost-1.83
            cereal
-           cgal-5
+           cgal
            curl
            dbus
            eigen
@@ -4183,6 +4058,10 @@ BOM creation and has a lot of extra features.")
        (sha256
         (base32 "19fi0y0lk45cyampczgh3kz2swai4zcgzkffp0xf5h55rxxrdpvk"))))
     (build-system cmake-build-system)
+    (inputs
+     (list protobuf
+           python
+           python-sip-4))
     (arguments
      `(#:tests? #f
        #:configure-flags '("-DBUILD_EXAMPLES=OFF")
@@ -4203,11 +4082,6 @@ BOM creation and has a lot of extra features.")
                                  (package-version python))
                                "/site-packages"
                                " Python3_SITEARCH"))))))))
-    (inputs
-     (list protobuf
-           python
-           python-sip-4))
-    (native-inputs (list python-setuptools))
     (home-page "https://github.com/Ultimaker/libArcus")
     (synopsis "Communication library for Ultimaker software components")
     (description "This library contains C++ code and Python3 bindings for
@@ -4426,6 +4300,15 @@ problem.  It was inspired from the SVGNest Javascript library.")
        (sha256
         (base32 "0jhqfylg6vzlbz9rqs981bg6y8s18iklw1p8hmax72xq2c7561s1"))))
     (build-system cmake-build-system)
+    (native-inputs
+     (list pkg-config))
+    (inputs
+     (list boost
+           clipper
+           libnest2d-for-cura
+           nlopt
+           python
+           python-sip-4))
     (arguments
      `(#:tests? #f
        #:phases
@@ -4445,16 +4328,6 @@ problem.  It was inspired from the SVGNest Javascript library.")
                   (string-append path " Python3_SITEARCH"))
                  (("\\$\\{_process_output\\} Python3_SITELIB")
                   (string-append path " Python3_SITELIB")))))))))
-    (native-inputs
-     (list pkg-config
-           python-setuptools))
-    (inputs
-     (list boost
-           clipper
-           libnest2d-for-cura
-           nlopt
-           python
-           python-sip-4))
     (home-page "https://github.com/Ultimaker/pynest2d")
     (synopsis "Python bindings for libnest2d")
     (description
@@ -4499,6 +4372,8 @@ belongs to the Cura project from Ultimaker.")
        (sha256
         (base32 "1cq85x0xizsjwf9nl7v7x4i9vl335mgv2lda3q2c9fcwrndsc3wk"))))
     (build-system cmake-build-system)
+    (inputs
+     (list python python-sip-4))
     (arguments
      `(#:tests? #f ; No test suite.
        #:phases
@@ -4515,8 +4390,6 @@ belongs to the Cura project from Ultimaker.")
                   (string-append path " Python3_SITEARCH"))
                  (("\\$\\{_process_output\\} Python3_SITELIB")
                   (string-append path " Python3_SITELIB")))))))))
-    (inputs (list python python-sip-4))
-    (native-inputs (list python-setuptools))
     (home-page "https://github.com/Ultimaker/libSavitar")
     (synopsis "C++ implementation of 3mf loading with SIP python bindings")
     (description "LibSavitar is a C++ implementation of 3mf loading with SIP
@@ -4959,9 +4832,7 @@ and mogan.")
                (("'\" [+] python_path [+]")
                 (string-append "'\" + std::string(\""
                                (assoc-ref outputs "out")
-                               "/lib/python"
-                               #$(version-major+minor (package-version python))
-                               "/site-packages"
+                               "/lib/python3.11/site-packages"
                                "\") +")))))
           (add-before 'check 'prepare-checks
             (lambda _

gnu/packages/enlightenment.scm

@@ -30,6 +30,7 @@
   #:use-module (guix gexp)
   #:use-module (guix utils)
   #:use-module (guix build-system meson)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (gnu packages)
   #:use-module (gnu packages algebra)

gnu/packages/esolangs.scm

@@ -136,3 +136,41 @@ whenever possible to the extent that the above points are not compromised.
 affect your score when code golfing.")
     (properties `((lint-hidden-cpe-vendors "premio" "jenkins")))
     (license license:expat)))
+
+(define-public shakespeare-spl
+  (package
+    (name "shakespeare-spl")
+    (version "1.2.1")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://sourceforge/shakespearelang/spl-"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "1lxpfhv01kcwy4l4xgx7j765g8g0v74jns0cr908nfw55h5fy1hj"))
+              (patches
+               (search-patches
+                "shakespeare-spl-fix-grammar.patch"))))
+    (build-system copy-build-system)
+    (arguments
+     `(#:imported-modules (,@%default-gnu-imported-modules
+                           (guix build copy-build-system))
+       #:modules ((guix build copy-build-system)
+                  ((guix build gnu-build-system) #:prefix gnu:)
+                  (guix build utils))
+       #:install-plan '(("spl/bin" "bin")
+                        ("spl/lib" "lib")
+                        ("spl/include" "include"))
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'install 'build
+           (assoc-ref gnu:%standard-phases 'build)))))
+    (native-inputs
+     (list bison flex))
+    (home-page "http://shakespearelang.sourceforge.net/")
+    (synopsis "Write programs like Shakespearean plays")
+    (description "Shakespeare is a programming language with the design goal
+of making programs read like plays.  The characters in the play are variables.
+If you want to assign a character, let's say Juliet, a positive value, you put
+her and another character on the stage and let that character praise Juliet.")
+    (license license:gpl2+)))

gnu/packages/fabric-management.scm

@@ -2,7 +2,7 @@
 ;;; Copyright © 2017 Dave Love <fx@gnu.org>
 ;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2019 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2019, 2023, 2026 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2019, 2023 Ludovic Courtès <ludo@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -226,19 +226,15 @@ testing InfiniBand networks.")
 
                            (string-append "--with-rdmacm="
                                           #$(this-package-input "rdma-core"))
-
-                           #$@(if (this-package-input "rocr-runtime")
-                                  #~((string-append "--with-rocm="
-                                                    #$(this-package-input
-                                                       "rocr-runtime")))
-                                  #~()))
+                           (string-append "--with-rocm="
+                                          #$(this-package-input "rocr-runtime")))
 
       ;; Be verbose so that compiler flags are displayed.
       #:make-flags #~'("V=1")))
     (native-inputs
      (list autoconf automake libtool pkg-config))
     (inputs
-     (list numactl rdma-core))
+     (list numactl rdma-core rocr-runtime))
     (synopsis "Optimized communication layer for message passing in HPC")
     (description
      "Unified Communication X (UCX) provides an optimized communication layer
@@ -254,13 +250,3 @@ memory mechanisms for efficient intra-node communication.")
     ;; and x86_64 as supported.
     (supported-systems '("x86_64-linux" "aarch64-linux" "powerpc64le-linux"
                          "riscv64-linux"))))
-
-;; Note: ROCm support is kept separate to avoid a significant increase in
-;; closure size: <https://codeberg.org/guix/guix/issues/7225>.
-(define-public ucx-rocm
-  (package/inherit ucx
-    (name "ucx-rocm")
-    (inputs (modify-inputs inputs
-              (append rocr-runtime)))
-    (synopsis "Optimized communication layer for message passing in HPC (with
-ROCm support)")))

gnu/packages/fediverse.scm

@@ -29,6 +29,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix utils)
   #:use-module (gnu packages)
@@ -244,6 +245,7 @@ seamlessly with your desktop environment.")
     (native-inputs
      (list nss-certs-for-test
            python-pytest
+           python-pytest-cov
            python-pytest-mock
            python-pytest-recording
            python-pytest-retry

gnu/packages/file-systems.scm

@@ -15,13 +15,11 @@
 ;;; Copyright © 2024 Ahmad Draidi <a.r.draidi@redscript.org>
 ;;; Copyright © 2024 Zheng Junjie <873216071@qq.com>
 ;;; Copyright © 2025 Julian Flake <flake@uni-koblenz.de>
-;;; Copyright © 2025-2026 Ashish SHUKLA <ashish.is@lostca.se>
+;;; Copyright © 2025 Ashish SHUKLA <ashish.is@lostca.se>
 ;;; Copyright © 2020-2025 Maxim Cournoyer <maxim@guixotic.coop>
 ;;; Copyright © 2025 45mg <45mg.writes@gmail.com>
 ;;; Copyright © 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2026 Giacomo Leidi <therewasa@fishinthecalculator.me>
-;;; Copyright © 2026 Daniel Littlewood <dan@danielittlewood.xyz>
-;;; Copyright © 2026 Artyom V. Poptsov <poptsov.artyom@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -52,6 +50,7 @@
   #:use-module (guix build-system go)
   #:use-module (guix build-system linux-module)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system trivial)
   #:use-module (guix utils)
@@ -1139,23 +1138,28 @@ transaction log.
     (source #f)
     (build-system trivial-build-system)
     (arguments
-     (list
-      #:modules '((guix build utils))
-      #:builder
-      #~(begin
-          (use-modules (guix build utils))
-          (let* ((sbin (string-append #$output "/sbin"))
-                 (fsck (string-append sbin "/jfs_fsck")))
-            (install-file (search-input-file %build-inputs "sbin/jfs_fsck")
-                          sbin)
-            (remove-store-references fsck)
-            (chmod fsck #o555)))))
+     `(#:modules ((guix build utils))
+       #:builder
+       (begin
+         (use-modules (guix build utils)
+                      (ice-9 ftw)
+                      (srfi srfi-26))
+         (let* ((jfsutils (assoc-ref %build-inputs "jfsutils"))
+                (fsck     "jfs_fsck")
+                (out      (assoc-ref %outputs "out"))
+                (sbin     (string-append out "/sbin")))
+           (mkdir-p sbin)
+           (with-directory-excursion sbin
+             (install-file (string-append jfsutils "/sbin/" fsck)
+                           ".")
+             (remove-store-references fsck)
+             (chmod fsck #o555))
+           #t))))
     (inputs
-     (list jfsutils/static))
+     `(("jfsutils" ,jfsutils/static)))
     (home-page (package-home-page jfsutils))
     (synopsis "Statically-linked jfs_fsck command from jfsutils")
-    (description
-     "This package provides statically-linked jfs_fsck command taken
+    (description "This package provides statically-linked jfs_fsck command taken
 from the jfsutils package.  It is meant to be used in initrds.")
     (license (package-license jfsutils))))
 
@@ -1507,10 +1511,160 @@ can create and compare snapshots, revert differences between them, and
 supports automatic snapshots timelines.")
     (license license:gpl2)))
 
+(define-public xfstests
+  ;; The last release (1.1.0) is from 2011.
+  (let ((revision "3")
+        (commit "8de535c53887bb49adae74a1b2e83e77d7e8457d"))
+    (package
+      (name "xfstests")
+      (version (git-version "1.1.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "git://git.kernel.org/pub/scm/fs/xfs/xfstests-dev.git")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1sbkryl04xflrk6jb4fsl3h2whilj5m3vpdkpwwb26idp7ckjjv6"))))
+      (build-system gnu-build-system)
+      (arguments
+       (list
+        #:phases
+        #~(modify-phases %standard-phases
+            (add-after 'unpack 'patch-tool-locations
+              (lambda* (#:key inputs #:allow-other-keys)
+                (substitute* "common/config"
+                  ;; Make absolute file names relative.
+                  (("(MKFS_PROG=\").*(\")" _ pre post)
+                   (string-append pre "mkfs" post)))
+                (for-each (lambda (file)
+                            (substitute* file
+                              (("( -s|#.|[= ])(/bin/sh|/bin/bash)" _ pre match)
+                               (string-append pre
+                                              (search-input-file inputs match)))
+                              (("/bin/(rm|true)" match)
+                               (search-input-file inputs match))
+                              (("/usr(/bin/time)" _ match)
+                               (search-input-file inputs match))))
+                          (append (find-files "common" ".*")
+                                  (find-files "tests" ".*")
+                                  (find-files "tools" ".*")
+                                  (find-files "src" "\\.(c|sh)$")))))
+            (replace 'bootstrap
+              (lambda* (#:key make-flags #:allow-other-keys)
+                (substitute* "Makefile"
+                  ;; Avoid a mysterious (to me) ‘permission denied’ error.
+                  (("cp ") "cp -f "))
+                (substitute* "m4/package_utilies.m4"
+                  ;; Fix the bogus hard-coded paths for every single binary.
+                  (("(AC_PATH_PROG\\(.*, ).*(\\))" _ pre post)
+                   (string-append pre (getenv "PATH") post)))
+                (apply invoke "make" "configure" make-flags)))
+            (add-after 'install 'wrap-xfstests/check
+              ;; Keep wrapping distinct from 'create-helper-script below: users
+              ;; must be able to invoke xfstests/check directly if they prefer.
+              (lambda* (#:key inputs #:allow-other-keys)
+                (wrap-program (string-append #$output "/xfstests/check")
+                  ;; Prefix the user's PATH with the minimum required tools.
+                  ;; The suite has many other optional dependencies and will
+                  ;; automatically select tests based on the original PATH.
+                  `("PATH" ":" prefix
+                    ,(map (lambda (file)
+                            (dirname (search-input-file inputs file)))
+                          (list "bin/setfacl"         ; acl
+                                "bin/attr"            ; attr
+                                "bin/bc"              ; bc
+                                "bin/df"              ; coreutils
+                                "bin/hostname"        ; inetutils
+                                "bin/perl"            ; perl
+                                "sbin/mkfs.xfs")))))) ; xfsprogs
+            (add-after 'install 'create-helper
+              ;; Upstream installs only a ‘check’ script that's not in $PATH and
+              ;; would try to write to the store without explaining how to change
+              ;; that.  Install a simple helper script to make it discoverable.
+              (lambda* (#:key inputs #:allow-other-keys)
+                (let* ((check  (string-append #$output "/xfstests/check"))
+                       (bin    (string-append #$output "/bin"))
+                       (helper (string-append bin "/xfstests-check")))
+                  (mkdir-p bin)
+                  (with-output-to-file helper
+                    (lambda _
+                      (format #t "#!~a --no-auto-compile\n!#\n"
+                              (search-input-file inputs "/bin/guile"))
+                      (write
+                       `(begin
+                          (define (try proc dir)
+                            "Try to PROC DIR.  Return DIR on success, else #f."
+                            (with-exception-handler (const #f)
+                              (lambda _ (proc dir) dir)
+                              #:unwind? #t))
+
+                          (define args
+                            (cdr (command-line)))
+
+                          (when (or (member "--help" args)
+                                    (member "-h" args))
+                            (format #t "Usage: ~a [OPTION]...
+This Guix helper sets up a new writable RESULT_BASE if it's unset, then executes
+xfstest's \"~a\" command (with any OPTIONs) as documented below.\n\n"
+                                    ,(basename helper)
+                                    ,(basename check)))
+
+                          (let* ((gotenv-base (getenv "RESULT_BASE"))
+                                 (base (or gotenv-base
+                                           (let loop ((count 0))
+                                             (or (try mkdir
+                                                      (format #f "xfstests.~a"
+                                                              count))
+                                                 (loop (+ 1 count))))))
+                                 (result-base (if (string-prefix? "/" base)
+                                                  base
+                                                  (string-append (getcwd) "/"
+                                                                 base))))
+                            (setenv "RESULT_BASE" result-base)
+                            ;; CHECK must run in its own directory or will fail.
+                            (chdir ,(dirname check))
+                            (let ((status
+                                   (status:exit-val (apply system* ,check args))))
+                              (unless gotenv-base
+                                (try rmdir result-base))
+                              status))))))
+                  (chmod helper #o755)))))))
+      (native-inputs
+       (list autoconf automake libtool))
+      (inputs
+       (list acl
+             attr
+             bash-minimal
+             bc
+             guile-3.0                  ; for our xfstests-check helper script
+             inetutils
+             `(,util-linux "lib")
+             perl
+             time
+             xfsprogs))
+      (home-page "https://git.kernel.org/pub/scm/fs/xfs/xfstests-dev.git")
+      (synopsis "File system @acronym{QA, Quality Assurance} test suite")
+      (description
+       "The @acronym{FSQA, File System Quality Assurance} regression test suite,
+more commonly known as xfstests, comprises over 1,500 tests that exercise
+(@dfn{torture}) both the user- and kernel-space parts of many different file
+systems.
+
+As the package's name subtly implies, it was originally developed to test the
+XFS file system.  Today, xfstests is the primary test suite for all major file
+systems supported by the kernel Linux including XFS, ext4, and Btrfs, but also
+virtual and network file systems such as NFS, 9P, and the overlay file system.
+
+The packaged @command{check} script is not in @env{PATH} but can be invoked
+with the included @command{xfstests-check} helper.")
+      (license license:gpl2))))
+
 (define-public zfs
   (package
     (name "zfs")
-    (version "2.4.2")
+    (version "2.4.1")
     (outputs '("out" "module" "src"))
     (source
      (origin
@@ -1519,7 +1673,7 @@ supports automatic snapshots timelines.")
                            "/download/zfs-" version
                            "/zfs-" version ".tar.gz"))
        (sha256
-        (base32 "13y7pqdkpplai7vkb06xv1c7pw5fl70clhg2qnjbx5gjd870s9ky"))))
+        (base32 "140k7hf83s509zq3igdh7dm7vw3hd99wgf4fax7ia8q01xvnjyy1"))))
     (build-system linux-module-build-system)
     (arguments
      (list
@@ -1548,7 +1702,7 @@ supports automatic snapshots timelines.")
                                      (search-input-directory
                                       inputs
                                       "lib/modules/build")))))
-          (add-after 'bootstrap 'patch-source
+          (add-after 'unpack 'patch-source
             (lambda* (#:key inputs #:allow-other-keys)
               ;; New feature "compatibility=" in 2.1.0.
               ;; This feature looks up in two locations:
@@ -1610,15 +1764,11 @@ supports automatic snapshots timelines.")
                 (("\\$\\(sysconfdir)") (string-append #$output "/etc")))
               (substitute* "udev/vdev_id"
                 (("PATH=/bin:/sbin:/usr/bin:/usr/sbin")
-                 (format #f "PATH=~a"
-                         (list->search-path-as-string
-                          (map (lambda (name)
-                                 (dirname (search-input-file inputs name)))
-                               '("bin/chmod"
-                                 "bin/grep"
-                                 "bin/sed"
-                                 "bin/gawk"))
-                          ":"))))
+                 (string-append "PATH="
+                                (dirname (which "chmod")) ":"
+                                (dirname (which "grep")) ":"
+                                (dirname (which "sed")) ":"
+                                (dirname (which "gawk")))))
               (substitute* '("Makefile.am" "Makefile.in")
                 (("\\$\\(prefix)/src") (string-append #$output:src "/src")))
               (substitute* (find-files "udev/rules.d/" ".rules.in$")
@@ -1653,11 +1803,8 @@ supports automatic snapshots timelines.")
                (string-append #$output
                               "/share/bash-completion/completions")))))))
     (native-inputs
-     (list attr autoconf automake libtool kmod pkg-config))
-    (inputs (list coreutils-minimal
-                  eudev
-                  gawk
-                  grep
+     (list attr kmod pkg-config))
+    (inputs (list eudev
                   kmod
                   libaio
                   libtirpc
@@ -1665,7 +1812,6 @@ supports automatic snapshots timelines.")
                   openssl
                   python
                   python-cffi
-                  sed
                   util-linux
                   `(,util-linux "lib")
                   zlib))
@@ -1919,10 +2065,6 @@ local file system using FUSE.")
        (sha256
         (base32 "09409sjncz7n9m2ia5nfzy10q7c23dvpgjdkc3j9bjs4f5hvc9aq"))))
     (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:test-backend #~'custom
-      #:test-flags #~(list "bitmasklist_test.py")))
     (native-inputs
      (list python-setuptools
            python-setuptools-scm))

gnu/packages/finance.scm

@@ -42,7 +42,6 @@
 ;;; Copyright © 2025-2026 Hennadii Stepanov <hebasto@gmail.com>
 ;;; Copyright © 2025 James Smith <jsubuntuxp@disroot.org>
 ;;; Copyright © 2026 Robin Templeton <robin@guixotic.coop>
-;;; Copyright © 2026 Artyom V. Poptsov <poptsov.artyom@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -71,6 +70,7 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system emacs)
   #:use-module (guix build-system haskell)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system go)
@@ -235,15 +235,14 @@ line client and a client based on Qt.")
                 "04kh88xklyq5w2x0zykfas6ssxajp1z33c2899fq342jnfr510b6"))))
     (arguments
      (substitute-keyword-arguments arguments
-       ((#:configure-flags original-flags '())
-        #~(cons "-DWITH_QT_VERSION=6"
-                #$original-flags))))
+       ((#:qtbase original-flags #f)
+        qtbase-5)))
     (native-inputs
      (modify-inputs native-inputs
        (delete qttools)
        (append imagemagick
                librsvg
-               qttools)))
+               qttools-5)))
     (home-page "https://bitcoinknots.org")
     (synopsis "Enhanced Bitcoin node/wallet based on Bitcoin Core")
     (description "Bitcoin Knots connects to the Bitcoin peer-to-peer network
@@ -650,6 +649,49 @@ It's not clear at the moment whether one day it will be possible to
 do so.")
     (license license:agpl3+)))
 
+(define-public libbwt-jni
+  (package
+    (name "libbwt-jni")
+    (version "0.2.4")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                     (url "https://github.com/bwt-dev/libbwt-jni")
+                     (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1xbb8ad6rlpg972rnf7fipgzz6ry7yzbnxacgisqpkcjnw768zy5"))
+              (snippet
+               '(begin
+                  (use-modules (guix build utils))
+                  (delete-file-recursively "bwt")
+                  (substitute* "Cargo.toml"
+                    (("path = \"./bwt\"")
+                     "version = \"0.2.4\""))))))
+    (build-system cargo-build-system)
+    (arguments
+     (list
+      #:install-source? #f
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'install 'install-lib
+            (lambda _
+              (install-file "target/release/libbwt_jni.so"
+                            (string-append #$output "/lib")))))))
+    (inputs (cons (package-source bwt)
+                  (cargo-inputs 'libbwt-jni)))
+    (home-page "https://github.com/bwt-dev/libbwt-jni")
+    (synopsis "Java Native Interface bindings for Bitcoin Wallet Tracker")
+    (description "Libbwt-jni is Java Native Interface bindings for Bitcoin
+Wallet Tracker, a lightweight personal indexer for Bitcoin wallets.
+Libbwt-jni allows you to programmatically manage bwt's Electrum RPC and HTTP
+API servers.  It can be used as a compatibility layer for easily upgrading
+Electrum-backed wallets to support a Bitcoin Core full node backend (by
+running the Electrum server in the wallet), or for shipping software that
+integrates bwt's HTTP API as an all-in-one package.")
+    (license license:expat)))
+
 (define-public python-electrum-ecc
   (package
     (name "python-electrum-ecc")
@@ -865,7 +907,7 @@ blockchain.")
   ;; the system's dynamically linked library.
   (package
     (name "monero")
-    (version "0.18.5.0")
+    (version "0.18.4.6")
     (source
      (origin
        (method git-fetch)
@@ -874,15 +916,16 @@ blockchain.")
              (commit (string-append "v" version))
              (recursive? #t)))
        (file-name (git-file-name name version))
+       (patches (search-patches "monero-use-system-miniupnpc.patch"))
        (modules '((guix build utils)))
        (snippet
         '(begin
            ;; Delete bundled dependencies.
            (for-each
             delete-file-recursively
-            '("external/rapidjson"))))
+            '("external/miniupnp" "external/rapidjson"))))
        (sha256
-        (base32 "0i0x4aacw2id877hdarp4vjc0cgs0yijsgrx85890xdypik2m8zq"))))
+        (base32 "0s03rwa1pfxxrj03f170sr6yd5v2wpqdfzam7gas1s71gg6v6ap6"))))
     (build-system cmake-build-system)
     (native-inputs
      (list doxygen
@@ -899,6 +942,7 @@ blockchain.")
            libsodium
            libunwind
            libusb
+           miniupnpc-2.1
            openssl
            protobuf
            rapidjson
@@ -968,7 +1012,7 @@ the Monero command line client and daemon.")
 (define-public monero-gui
   (package
     (name "monero-gui")
-    (version "0.18.5.0")
+    (version "0.18.4.7")
     (source
      (origin
        (method git-fetch)
@@ -984,7 +1028,7 @@ the Monero command line client and daemon.")
            ;; See the 'extract-monero-sources' phase.
            (delete-file-recursively "monero")))
        (sha256
-        (base32 "17r588gwdy5q0r9zy6382c64aglhym0l3a4pd8rr1v3li5v78fcb"))))
+        (base32 "1nbv07jjwznz2x0ch1467vhnd0b4j3y01gv78dzbm7pilbb9wh72"))))
     (build-system qt-build-system)
     (native-inputs
      `(,@(package-native-inputs monero)
@@ -1284,7 +1328,7 @@ Ledger Blue/Nano S.")
 (define-public python-trezor
   (package
     (name "python-trezor")
-    (version "0.20.0")
+    (version "0.13.7")
     (source
      (origin
        (method git-fetch)
@@ -1293,7 +1337,7 @@ Ledger Blue/Nano S.")
              (commit (string-append "python/v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "06d4mw8iydgv2c3qxa47482k7dqpg89a2b6wd8f4g15ydn3gsfmn"))
+        (base32 "13wyl9b15c8iscfakprwfvh2akw180hfqdjww79b78ywz51y7hdh"))
        (modules
         '((guix build utils)
           (srfi srfi-26)
@@ -1331,32 +1375,26 @@ Ledger Blue/Nano S.")
                           "test_legacy_basic"
                           "test_unsigned"
                           "test_vendor_header")
-                    " and not "))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'relax-requirements
-            (lambda _
-              (substitute* "pyproject.toml"
-                (("platformdirs>=4.4.0") "platformdirs")))))))
+                    " and not "))))
     (propagated-inputs
-     (list python-click
-           python-construct
+     (list python-attrs
+           python-click
            python-construct-classes
-           python-cryptography
-           python-keyring
+           python-ecdsa
+           python-hidapi
            python-libusb1
            python-mnemonic
-           python-noiseprotocol
-           python-platformdirs
            python-requests
-           python-shamir-mnemonic
-           python-slip10
            python-typing-extensions))
-    (native-inputs
+    (native-inputs ; Only needed for running the tests
      (list nss-certs-for-test
-           python-hatchling
-           python-setuptools
-           python-pytest))
+           protobuf
+           python-pytest
+           python-pillow
+           python-protobuf
+           python-pyqt
+           python-pytest
+           python-simple-rlp))
     (home-page "https://github.com/trezor/python-trezor")
     (synopsis "Python library for communicating with TREZOR Hardware Wallet")
     (description "@code{trezor} is a Python library for communicating with
@@ -1515,7 +1553,7 @@ agent.")
 (define-public kitsas
   (package
     (name "kitsas")
-    (version "5.11.1")
+    (version "5.9")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1524,7 +1562,7 @@ agent.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1rlg36r62ngl4zpqja7fv407i6xnax2wh7y5jcplsx3zi7nrnkk5"))))
+                "0hx8fad8pyma6gq60ziiqd5mbflwzjn0115lsdvf72sz86jryl70"))))
     (build-system qt-build-system)
     (inputs (list libzip qtsvg qtwebengine qt5compat))
     (arguments
@@ -1583,7 +1621,10 @@ features:
        (sha256
         (base32 "0yir8hka3vmpk0qhiaffagkdjg3mjgai808s0razsggbd5cn80bb"))))
     (build-system pyproject-build-system)
-    (native-inputs (list python-pytest python-setuptools))
+    (native-inputs
+     (list python-pytest
+           python-pytest-cov
+           python-setuptools))
     (home-page "https://arthurdejong.org/python-stdnum/")
     (synopsis "Python module to handle standardized number and code formats")
     (description
@@ -1675,26 +1716,19 @@ main features are:
 (define-public silkaj
   (package
     (name "silkaj")
-    ;; 0.12.1 (2025-07-08), all tests passed on the latest commit, revert back
-    ;; to git tag when released.
-    (properties '((commit . "dabe484ba1871030be33a1473ee473004e102763")
-                  (revision . "0")))
-    (version (git-version "0.12.1"
-                          (assoc-ref properties 'revision)
-                          (assoc-ref properties 'commit)))
+    (version "0.12.1")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://git.duniter.org/clients/python/silkaj")
-              (commit (assoc-ref properties 'commit))))
+             (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "08wg4q3y747apj5phq4ghjgg9cdr8mnyzjspjvd8v9qz08v5zg6b"))))
+        (base32 "0prglgwvzi676h4lyw9266sqiqbfs2l0mv0bmjvplvdxzzcs63bv"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; tests: 224 passed, 4 skipped, 2 deselected
       #:test-flags
       ;; They require Poetry in the PATH.
       #~(list "--ignore=tests/integration/"
@@ -2113,10 +2147,7 @@ it can easily generate custom reports specific to accounting purposes.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0zlanw88dq7czgsdvqwz2fgxamyrfnx15ymv4d7fnjrj04glpg47"))
-       ;; TODO: Remove in the next release:
-       ;; https://github.com/beancount/beangulp/commit/254bfb38ffed
-       (patches (search-patches "python-beangulp-click-8.2-compat.patch"))))
+        (base32 "0zlanw88dq7czgsdvqwz2fgxamyrfnx15ymv4d7fnjrj04glpg47"))))
     (build-system pyproject-build-system)
     (propagated-inputs
      (list beancount
@@ -2184,18 +2215,12 @@ software Beancount with a focus on features and usability.")
        (sha256
         (base32 "18kdic6rg9qizam6cgd2ljpapwiqh2dc3s6wsaz46kjc1yhhwjqy"))))
     (build-system pyproject-build-system)
-    (arguments
-     (list #:tests? #f))        ;no tests
     (propagated-inputs (list fava))
     (native-inputs (list python-pdm-backend))
     (home-page "https://github.com/stenius/fava-envelope-airmail")
     (synopsis "Envelope budgeting for Fava/Beancount")
-    (description
-     "Envelope budgeting for Fava/Beancount with stats, scheduled
-transactions, and color-coded UI.  It's a fork of
-@url{https://github.com/memst/fava-envelope} (itself a fork of
-@url{https://github.com/polarmutex/fava-envelope}) that adds several
-enhancements for envelope budgeting.")
+    (description "Envelope budgeting for Fava/Beancount with stats, scheduled
+transactions, and color-coded UI.")
     (license license:expat)))
 
 (define-public emacs-beancount
@@ -2482,6 +2507,10 @@ analysis of financial market data.")
         (base32 "13g5338aa8vgkx8g94vz5d8ynfq3jndvyh1nz6dlhw4axwr4x8dp"))))
     (properties '(("upstream-name" #{.}# "mt-940")))
     (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      #~(list "-c" "/dev/null")))       ; Remove custom --cov flags.
     (native-inputs (list python-pytest python-pyyaml python-setuptools))
     (home-page "https://mt940.readthedocs.io/")
     (synopsis "Python parser for MT940-encoded SWIFT data")
@@ -2515,7 +2544,7 @@ files.")
 (define-public xmrig
   (package
     (name "xmrig")
-    (version "6.26.0")
+    (version "6.25.0")
     (source
      (origin
        (method git-fetch)
@@ -2523,7 +2552,7 @@ files.")
              (url "https://github.com/xmrig/xmrig")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
-       (sha256 (base32 "12s0nk3b1nyh76gqcfdr3158y0kcrkfprahajnbv0k34rp49m4k4"))
+       (sha256 (base32 "0hchl2vwsn7aps6y1zjhxczm8l8lvl5ac8hblwl3qj0y2n7iszjz"))
        (modules '((guix build utils)))
        (snippet
         ;; TODO: Try to use system libraries instead of bundled ones in
@@ -2572,7 +2601,7 @@ mining.")
 (define-public p2pool
   (package
     (name "p2pool")
-    (version "4.15.1")
+    (version "4.14")
     (source
      (origin
        (method git-fetch)
@@ -2581,7 +2610,7 @@ mining.")
              (commit (string-append "v" version))
              (recursive? #t)))
        (file-name (git-file-name name version))
-       (sha256 (base32 "0v0wpm4bxikm8b78hsc3rp9x59574b2r39sbk2z3sjbyyshrqfpx"))
+       (sha256 (base32 "10dp6kxmvdx5lz4n144s9av32nzfxgfw28kf92dnmrv13q5p7id2"))
        (modules '((guix build utils)))
        (snippet
         #~(for-each delete-file-recursively
@@ -2623,3 +2652,67 @@ combines the advantages of pool and solo mining; you still fully control your
 Monero node and what it mines, but you get frequent payouts like on a regular
 pool.")
     (license license:gpl3)))
+
+(define-public opentaxsolver
+  ;; The OTS version is formatted like tax-year_version. So, at time of
+  ;; writing, the version is 2023_21.03. Each part of this is used in
+  ;; different places in the source uri, so it's convenient to have them
+  ;; separately like this.
+  (let ((tax-year "2023")
+        (ots-version "21.03"))
+    (package
+      (name "opentaxsolver")
+      (version (string-append tax-year "_" ots-version))
+      (source
+       (origin
+         (method url-fetch)
+         (uri (string-append "mirror://sourceforge/opentaxsolver/OTS_"
+                             tax-year "/v" ots-version
+                             "_linux/OpenTaxSolver" version "_linux64.tgz"))
+         (sha256
+          (base32
+           "1i543bvclnyiwnyjlskhr2bxlsigggvwdhg2519rf12lsghgfszq"))
+         (patches (search-patches "opentaxsolver-file-browser-fix.patch"))))
+      (build-system glib-or-gtk-build-system)
+      (arguments
+       (list
+        #:tests? #f                     ;no tests
+        #:phases
+        #~(modify-phases %standard-phases
+            (delete 'configure)         ;no configure script
+            ;; OTS does provide a shellscript that does exactly this, but we
+            ;; need to do it ourselves to specify the correct compiler and to
+            ;; delete the GUI binaries.
+            (replace 'build
+              (lambda _
+                (delete-file "Run_taxsolve_GUI")
+                (delete-file-recursively "bin")
+                (mkdir "bin")
+                (chdir "src/Gui_gtk")
+                (invoke "make"
+                        (string-append "CC=" #$(cc-for-target)))
+                (chdir "..")
+                (invoke "make"
+                        (string-append "CC=" #$(cc-for-target)))))
+            ;; OTS doesn't provide a `make install` target, because it assumes
+            ;; it'll be run from the tarball. So, we do it ourselves, making
+            ;; sure to replicate the directory structure of the tarball.
+            (replace 'install
+              (lambda _
+                (copy-recursively "../bin"
+                                  (string-append #$output "/bin"))
+                (symlink (string-append #$output "/bin/ots_gui2")
+                         (string-append #$output "/bin/Run_taxsolve_GUI"))
+                (copy-recursively "../tax_form_files"
+                                  (string-append #$output "/tax_form_files"))
+                (copy-recursively "formdata"
+                                  (string-append #$output "/src/formdata")))))))
+      (native-inputs (list pkg-config))
+      (inputs (list gtk+-2))
+      (synopsis "Yearly tax preparation tool")
+      (description
+       "OpenTaxSolver is a program for calculating tax form entries for
+federal and state personal income taxes.  It automatically fills out and
+prints your forms for mailing.")
+      (home-page "https://opentaxsolver.sourceforge.net/")
+      (license license:gpl2+))))

gnu/packages/firmware.scm

@@ -47,6 +47,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system trivial)
   #:use-module (gnu packages)

gnu/packages/flashing-tools.scm

@@ -49,6 +49,7 @@
   #:use-module (guix build-system go)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix download)
   #:use-module (guix gexp)

gnu/packages/fonts.scm

@@ -73,7 +73,6 @@
 ;;; Copyright © 2026 Luis Guilherme Coelho <lgcoelho@disroot.org>
 ;;; Copyright © 2026 Carlos Durán Domínguez <wurt@wurt.eu>
 ;;; Copyright © 2026 Joan Vilardaga Castro <codeberg-hn80@joanvc.cat>
-;;; Copyright © 2026 Sughosha <sughosha@disroot.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -1634,392 +1633,6 @@ These fonts include glyphs from multiple icon sets:
 @item Codeicons
 @end itemize
 
-The monospaced variant ensures all glyphs have uniform width, which is essential
-for terminal emulators that require consistent character spacing.")
-    ;; https://github.com/ryanoasis/nerd-fonts/blob/master/license-audit.md
-    (license (list license:expat license:cc-by4.0 license:unlicense
-                   license:asl2.0 license:silofl1.1))))
-
-(define-public font-nerd-fira-code
-  (package
-    (name "font-nerd-fira-code")
-    (version "3.4.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/ryanoasis/nerd-fonts")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0adash47a0pmvhhbqr9wzp3r287hzj50f28pswdxm30l0br6zgfa"))
-       (modules '((srfi srfi-26)
-                  (ice-9 ftw)
-                  (guix build utils)))
-       (snippet
-        ;; Remove fonts we don't use to save space and build time.
-        #~(begin
-            (delete-file-recursively "patched-fonts")
-            (with-directory-excursion "src/unpatched-fonts"
-              (let ((keep? (cut member <>
-                                '("." ".." "FiraCode"))))
-                (for-each delete-file-recursively
-                          (scandir "."
-                                   (negate keep?)))))))))
-    (build-system font-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'change-directory
-            (lambda _
-              (chdir "src/unpatched-fonts/FiraCode")))
-          (add-before 'install 'build
-            (lambda _
-              (for-each (lambda (font)
-                          ;; Patch every font variant with normal, mono and
-                          ;; proportional modes.
-                          ;; --complete: Include all icon sets.
-                          ;; --mono will generate the Mono variants.
-                          ;; --variable-width-glyphs will generate the
-                          ;; Proportional variants (used for graphical
-                          ;; environments).
-                          ;; If no flag is specified, the no-mono no-proportional
-                          ;; font will be built.
-                          ;; --ext ttf: Generate TrueType font.
-                          ;; --no-progressbars: Disable progress bars for clean build
-                          ;; output.
-                          (for-each (lambda (mode)
-                                      (apply invoke "fontforge" "-script"
-                                             "../../../font-patcher"
-                                             `("--complete" ,@(if mode
-                                                                  (list mode)
-                                                                  '())
-                                               "--ext"
-                                               "ttf"
-                                               "--no-progressbars"
-                                               "--outputdir"
-                                               "."
-                                               ,font)))
-                                    '(#nil "--mono" "--variable-width-glyphs")))
-                        '("Bold/FiraCode-Bold.ttf"
-                          "Light/FiraCode-Light.ttf"
-                          "Medium/FiraCode-Medium.ttf"
-                          "Regular/FiraCode-Regular.ttf"
-                          "Retina/FiraCode-Retina.ttf"
-                          "SemiBold/FiraCode-SemiBold.ttf"))))
-          (add-after 'build 'check
-            (lambda* (#:key tests? #:allow-other-keys)
-              (when tests?
-                (for-each (lambda (font)
-                            ;; Use Python script with fontforge to validate the font.
-                            (invoke "python3" "-c"
-                                    (format #f
-                                     "import fontforge
-name = ~s
-font = fontforge.open(name)
-glyph_count = len([g for g in font.glyphs() if g.unicode > 0])
-print(f'Font has {glyph_count} glyphs with Unicode mapping')
-if glyph_count < 8000:
-    raise ValueError(f'Font has too few glyphs: {glyph_count}')
-print(f'✓ Font validation passed for {name}')
-font.close()~%"
-                                     font)))
-                          '("FiraCodeNerdFont-Bold.ttf"
-                            "FiraCodeNerdFont-Light.ttf"
-                            "FiraCodeNerdFont-Medium.ttf"
-                            "FiraCodeNerdFont-Regular.ttf"
-                            "FiraCodeNerdFont-Retina.ttf"
-                            "FiraCodeNerdFont-SemiBold.ttf"
-                            "FiraCodeNerdFontMono-Bold.ttf"
-                            "FiraCodeNerdFontMono-Light.ttf"
-                            "FiraCodeNerdFontMono-Medium.ttf"
-                            "FiraCodeNerdFontMono-Regular.ttf"
-                            "FiraCodeNerdFontMono-Retina.ttf"
-                            "FiraCodeNerdFontMono-SemiBold.ttf"
-                            "FiraCodeNerdFontPropo-Bold.ttf"
-                            "FiraCodeNerdFontPropo-Light.ttf"
-                            "FiraCodeNerdFontPropo-Medium.ttf"
-                            "FiraCodeNerdFontPropo-Regular.ttf"
-                            "FiraCodeNerdFontPropo-Retina.ttf"
-                            "FiraCodeNerdFontPropo-SemiBold.ttf"))))))))
-    (native-inputs (list fontforge python-minimal))
-    (home-page "https://www.nerdfonts.com/")
-    (synopsis "Fira Code with an iconic font collection")
-    (description
-     "This package provides the Fira Code font with the extra
-glyphs from Nerd Fonts.
-
-@itemize
-@item Fira Code
-@item Fira Code Mono
-@end itemize
-
-These fonts include glyphs from multiple icon sets:
-
-@itemize
-@item Powerline with Extra Symbols
-@item Font Awesome and Font Awesome Extension
-@item Material Design Icons
-@item Weather Icons
-@item Devicons
-@item Octicons
-@item Font Logos (formerly Font Linux)
-@item Pomicons
-@item Codeicons
-@end itemize
-
-The monospaced variant ensures all glyphs have uniform width, which is essential
-for terminal emulators that require consistent character spacing.")
-    ;; https://github.com/ryanoasis/nerd-fonts/blob/master/license-audit.md
-    (license (list license:expat license:cc-by4.0 license:unlicense
-                   license:asl2.0 license:silofl1.1))))
-
-(define-public font-nerd-jetbrains-mono
-  (package
-    (name "font-nerd-jetbrains-mono")
-    (version "3.4.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/ryanoasis/nerd-fonts")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0adash47a0pmvhhbqr9wzp3r287hzj50f28pswdxm30l0br6zgfa"))
-       (modules '((srfi srfi-26)
-                  (ice-9 ftw)
-                  (guix build utils)))
-       (snippet
-        ;; Remove fonts we don't use to save space and build time.
-        #~(begin
-            (delete-file-recursively "patched-fonts")
-            (with-directory-excursion "src/unpatched-fonts"
-              (let ((keep? (cut member <>
-                                '("." ".." "JetBrainsMono"))))
-                (for-each delete-file-recursively
-                          (scandir "."
-                                   (negate keep?)))))))))
-    (build-system font-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'change-directory
-            (lambda _
-              (chdir "src/unpatched-fonts/JetBrainsMono")))
-          (add-before 'install 'build
-            (lambda _
-              (for-each (lambda (font)
-                          ;; Patch every font variant with normal, mono and
-                          ;; proportional modes.
-                          ;; --complete: Include all icon sets.
-                          ;; --mono will generate the Mono variants.
-                          ;; --variable-width-glyphs will generate the
-                          ;; Proportional variants (used for graphical
-                          ;; environments).
-                          ;; If no flag is specified, the no-mono no-proportional
-                          ;; font will be built.
-                          ;; --ext ttf: Generate TrueType font.
-                          ;; --no-progressbars: Disable progress bars for clean build
-                          ;; output.
-                          (for-each (lambda (mode)
-                                      (apply invoke "fontforge" "-script"
-                                             "../../../font-patcher"
-                                             `("--complete" ,@(if mode
-                                                                  (list mode)
-                                                                  '())
-                                               "--ext"
-                                               "ttf"
-                                               "--no-progressbars"
-                                               "--outputdir"
-                                               "."
-                                               ,font)))
-                                    '(#nil "--mono" "--variable-width-glyphs")))
-                        `("Ligatures/Bold/JetBrainsMono-Bold.ttf"
-                          "Ligatures/BoldItalic/JetBrainsMono-BoldItalic.ttf"
-                          "Ligatures/ExtraBold/JetBrainsMono-ExtraBold.ttf"
-                          ,(string-append "Ligatures/ExtraBoldItalic/"
-                                          "JetBrainsMono-ExtraBoldItalic.ttf")
-                          "Ligatures/ExtraLight/JetBrainsMono-ExtraLight.ttf"
-                          ,(string-append "Ligatures/ExtraLightItalic/"
-                                          "JetBrainsMono-ExtraLightItalic.ttf")
-                          "Ligatures/Italic/JetBrainsMono-Italic.ttf"
-                          "Ligatures/Light/JetBrainsMono-Light.ttf"
-                          "Ligatures/LightItalic/JetBrainsMono-LightItalic.ttf"
-                          "Ligatures/Medium/JetBrainsMono-Medium.ttf"
-                          ,(string-append "Ligatures/MediumItalic/"
-                                          "JetBrainsMono-MediumItalic.ttf")
-                          "Ligatures/Regular/JetBrainsMono-Regular.ttf"
-                          "Ligatures/SemiBold/JetBrainsMono-SemiBold.ttf"
-                          ,(string-append "Ligatures/SemiBoldItalic/"
-                                          "JetBrainsMono-SemiBoldItalic.ttf")
-                          "Ligatures/Thin/JetBrainsMono-Thin.ttf"
-                          "Ligatures/ThinItalic/JetBrainsMono-ThinItalic.ttf"
-                          "NoLigatures/Bold/JetBrainsMonoNL-Bold.ttf"
-                          ,(string-append "NoLigatures/BoldItalic/"
-                                          "JetBrainsMonoNL-BoldItalic.ttf")
-                          "NoLigatures/ExtraBold/JetBrainsMonoNL-ExtraBold.ttf"
-                          ,(string-append "NoLigatures/ExtraBoldItalic/"
-                                          "JetBrainsMonoNL-ExtraBoldItalic.ttf")
-                          ,(string-append "NoLigatures/ExtraLight/"
-                                          "JetBrainsMonoNL-ExtraLight.ttf")
-                          ,(string-append "NoLigatures/ExtraLightItalic/"
-                                          "JetBrainsMonoNL-ExtraLightItalic.ttf")
-                          "NoLigatures/Italic/JetBrainsMonoNL-Italic.ttf"
-                          "NoLigatures/Light/JetBrainsMonoNL-Light.ttf"
-                          ,(string-append "NoLigatures/LightItalic/"
-                                          "JetBrainsMonoNL-LightItalic.ttf")
-                          "NoLigatures/Medium/JetBrainsMonoNL-Medium.ttf"
-                          ,(string-append "NoLigatures/MediumItalic/"
-                                          "JetBrainsMonoNL-MediumItalic.ttf")
-                          "NoLigatures/Regular/JetBrainsMonoNL-Regular.ttf"
-                          "NoLigatures/SemiBold/JetBrainsMonoNL-SemiBold.ttf"
-                          ,(string-append "NoLigatures/SemiBoldItalic/"
-                                          "JetBrainsMonoNL-SemiBoldItalic.ttf")
-                          "NoLigatures/Thin/JetBrainsMonoNL-Thin.ttf"
-                          ,(string-append "NoLigatures/ThinItalic/"
-                                          "JetBrainsMonoNL-ThinItalic.ttf")))))
-          (add-after 'build 'check
-            (lambda* (#:key tests? #:allow-other-keys)
-              (when tests?
-                (for-each (lambda (font)
-                            ;; Use Python script with fontforge to validate the font.
-                            (invoke "python3" "-c"
-                                    (format #f
-                                     "import fontforge
-name = ~s
-font = fontforge.open(name)
-glyph_count = len([g for g in font.glyphs() if g.unicode > 0])
-print(f'Font has {glyph_count} glyphs with Unicode mapping')
-if glyph_count < 8000:
-    raise ValueError(f'Font has too few glyphs: {glyph_count}')
-print(f'✓ Font validation passed for {name}')
-font.close()~%"
-                                     font)))
-                          '("JetBrainsMonoNerdFont-Bold.ttf"
-                            "JetBrainsMonoNerdFont-Bold.ttf"
-                            "JetBrainsMonoNerdFontMono-Bold.ttf"
-                            "JetBrainsMonoNerdFontMono-Bold.ttf"
-                            "JetBrainsMonoNerdFontPropo-Bold.ttf"
-                            "JetBrainsMonoNerdFontPropo-Bold.ttf"
-                            "JetBrainsMonoNerdFont-BoldItalic.ttf"
-                            "JetBrainsMonoNerdFont-BoldItalic.ttf"
-                            "JetBrainsMonoNerdFontMono-BoldItalic.ttf"
-                            "JetBrainsMonoNerdFontMono-BoldItalic.ttf"
-                            "JetBrainsMonoNerdFontPropo-BoldItalic.ttf"
-                            "JetBrainsMonoNerdFontPropo-BoldItalic.ttf"
-                            "JetBrainsMonoNerdFont-ExtraBold.ttf"
-                            "JetBrainsMonoNerdFont-ExtraBold.ttf"
-                            "JetBrainsMonoNerdFontMono-ExtraBold.ttf"
-                            "JetBrainsMonoNerdFontMono-ExtraBold.ttf"
-                            "JetBrainsMonoNerdFontPropo-ExtraBold.ttf"
-                            "JetBrainsMonoNerdFontPropo-ExtraBold.ttf"
-                            "JetBrainsMonoNerdFont-ExtraBoldItalic.ttf"
-                            "JetBrainsMonoNerdFont-ExtraBoldItalic.ttf"
-                            "JetBrainsMonoNerdFontMono-ExtraBoldItalic.ttf"
-                            "JetBrainsMonoNerdFontMono-ExtraBoldItalic.ttf"
-                            "JetBrainsMonoNerdFontPropo-ExtraBoldItalic.ttf"
-                            "JetBrainsMonoNerdFontPropo-ExtraBoldItalic.ttf"
-                            "JetBrainsMonoNerdFont-ExtraLight.ttf"
-                            "JetBrainsMonoNerdFont-ExtraLight.ttf"
-                            "JetBrainsMonoNerdFontMono-ExtraLight.ttf"
-                            "JetBrainsMonoNerdFontMono-ExtraLight.ttf"
-                            "JetBrainsMonoNerdFontPropo-ExtraLight.ttf"
-                            "JetBrainsMonoNerdFontPropo-ExtraLight.ttf"
-                            "JetBrainsMonoNerdFont-ExtraLightItalic.ttf"
-                            "JetBrainsMonoNerdFont-ExtraLightItalic.ttf"
-                            "JetBrainsMonoNerdFontMono-ExtraLightItalic.ttf"
-                            "JetBrainsMonoNerdFontMono-ExtraLightItalic.ttf"
-                            "JetBrainsMonoNerdFontPropo-ExtraLightItalic.ttf"
-                            "JetBrainsMonoNerdFontPropo-ExtraLightItalic.ttf"
-                            "JetBrainsMonoNerdFont-Italic.ttf"
-                            "JetBrainsMonoNerdFont-Italic.ttf"
-                            "JetBrainsMonoNerdFontMono-Italic.ttf"
-                            "JetBrainsMonoNerdFontMono-Italic.ttf"
-                            "JetBrainsMonoNerdFontPropo-Italic.ttf"
-                            "JetBrainsMonoNerdFontPropo-Italic.ttf"
-                            "JetBrainsMonoNerdFont-Light.ttf"
-                            "JetBrainsMonoNerdFont-Light.ttf"
-                            "JetBrainsMonoNerdFontMono-Light.ttf"
-                            "JetBrainsMonoNerdFontMono-Light.ttf"
-                            "JetBrainsMonoNerdFontPropo-Light.ttf"
-                            "JetBrainsMonoNerdFontPropo-Light.ttf"
-                            "JetBrainsMonoNerdFont-LightItalic.ttf"
-                            "JetBrainsMonoNerdFont-LightItalic.ttf"
-                            "JetBrainsMonoNerdFontMono-LightItalic.ttf"
-                            "JetBrainsMonoNerdFontMono-LightItalic.ttf"
-                            "JetBrainsMonoNerdFontPropo-LightItalic.ttf"
-                            "JetBrainsMonoNerdFontPropo-LightItalic.ttf"
-                            "JetBrainsMonoNerdFont-Medium.ttf"
-                            "JetBrainsMonoNerdFont-Medium.ttf"
-                            "JetBrainsMonoNerdFontMono-Medium.ttf"
-                            "JetBrainsMonoNerdFontMono-Medium.ttf"
-                            "JetBrainsMonoNerdFontPropo-Medium.ttf"
-                            "JetBrainsMonoNerdFontPropo-Medium.ttf"
-                            "JetBrainsMonoNerdFont-MediumItalic.ttf"
-                            "JetBrainsMonoNerdFont-MediumItalic.ttf"
-                            "JetBrainsMonoNerdFontMono-MediumItalic.ttf"
-                            "JetBrainsMonoNerdFontMono-MediumItalic.ttf"
-                            "JetBrainsMonoNerdFontPropo-MediumItalic.ttf"
-                            "JetBrainsMonoNerdFontPropo-MediumItalic.ttf"
-                            "JetBrainsMonoNerdFont-Regular.ttf"
-                            "JetBrainsMonoNerdFont-Regular.ttf"
-                            "JetBrainsMonoNerdFontMono-Regular.ttf"
-                            "JetBrainsMonoNerdFontMono-Regular.ttf"
-                            "JetBrainsMonoNerdFontPropo-Regular.ttf"
-                            "JetBrainsMonoNerdFontPropo-Regular.ttf"
-                            "JetBrainsMonoNerdFont-SemiBold.ttf"
-                            "JetBrainsMonoNerdFont-SemiBold.ttf"
-                            "JetBrainsMonoNerdFontMono-SemiBold.ttf"
-                            "JetBrainsMonoNerdFontMono-SemiBold.ttf"
-                            "JetBrainsMonoNerdFontPropo-SemiBold.ttf"
-                            "JetBrainsMonoNerdFontPropo-SemiBold.ttf"
-                            "JetBrainsMonoNerdFont-SemiBoldItalic.ttf"
-                            "JetBrainsMonoNerdFont-SemiBoldItalic.ttf"
-                            "JetBrainsMonoNerdFontMono-SemiBoldItalic.ttf"
-                            "JetBrainsMonoNerdFontMono-SemiBoldItalic.ttf"
-                            "JetBrainsMonoNerdFontPropo-SemiBoldItalic.ttf"
-                            "JetBrainsMonoNerdFontPropo-SemiBoldItalic.ttf"
-                            "JetBrainsMonoNerdFont-Thin.ttf"
-                            "JetBrainsMonoNerdFont-Thin.ttf"
-                            "JetBrainsMonoNerdFontMono-Thin.ttf"
-                            "JetBrainsMonoNerdFontMono-Thin.ttf"
-                            "JetBrainsMonoNerdFontPropo-Thin.ttf"
-                            "JetBrainsMonoNerdFontPropo-Thin.ttf"
-                            "JetBrainsMonoNerdFont-ThinItalic.ttf"
-                            "JetBrainsMonoNerdFont-ThinItalic.ttf"
-                            "JetBrainsMonoNerdFontMono-ThinItalic.ttf"
-                            "JetBrainsMonoNerdFontMono-ThinItalic.ttf"
-                            "JetBrainsMonoNerdFontPropo-ThinItalic.ttf"
-                            "JetBrainsMonoNerdFontPropo-ThinItalic.ttf"))))))))
-    (native-inputs (list fontforge python-minimal))
-    (home-page "https://www.nerdfonts.com/")
-    (synopsis "JetBrains Mono with an iconic font collection")
-    (description
-     "This package provides the JetBrains Mono font with the extra
-glyphs from Nerd Fonts.
-
-@itemize
-@item JetBrains
-@item JetBrains Mono
-@end itemize
-
-These fonts include glyphs from multiple icon sets:
-
-@itemize
-@item Powerline with Extra Symbols
-@item Font Awesome and Font Awesome Extension
-@item Material Design Icons
-@item Weather Icons
-@item Devicons
-@item Octicons
-@item Font Logos (formerly Font Linux)
-@item Pomicons
-@item Codeicons
-@end itemize
-
 The monospaced variant ensures all glyphs have uniform width, which is essential
 for terminal emulators that require consistent character spacing.")
     ;; https://github.com/ryanoasis/nerd-fonts/blob/master/license-audit.md
@@ -4260,17 +3873,17 @@ typographical palette.")
 (define-public font-mona-sans
   (package
     (name "font-mona-sans")
-    (version "2.0.26")
+    (version "2.0.8")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/github/mona-sans")
-             (commit (string-append "v" version))))
+             (commit version)))
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "09b6apxq659y4dkkm5swy683q6hviibv1cd48ragm5rd1376hsaz"))))
+         "1gdblparf0v5mdbp891wnsc5x4dxr433fg0dmz0mhzrdw9vaalig"))))
     (build-system font-build-system)
     (outputs '("out" "ttf" "woff"))
     (home-page "https://github.com/mona-sans")

gnu/packages/fontutils.scm

@@ -96,6 +96,7 @@
   #:use-module (guix build-system go)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix utils)
   #:use-module (srfi srfi-1))
 
@@ -472,53 +473,6 @@ font design software, it allows you to join, split, offset, and perform many
 other operations on paths.")
     (license license:expat)))
 
-(define-public python-booleanoperations
-  (package
-    (name "python-booleanoperations")
-    (version "0.9.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/typemytype/booleanOperations")
-              (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0ahfgamyq1ndwbr9n8sdx8qhqc2195xnbahylgjpk877hbr2gxav"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      ;; Some tests fail due to small differences in the expected result (see:
-      ;; <https://github.com/typemytype/booleanOperations/issues/69>).
-      #:test-flags
-      #~(list "-k"
-              (string-join
-               (list "not test_QTail_reversed_difference"
-                     "test_QTail_reversed_intersection"
-                     "test_QTail_reversed_union"
-                     "test_QTail_reversed_xor"
-                     "test_Q_difference"
-                     "test_Q_intersection"
-                     "test_Q_union"
-                     "test_Q_xor")
-               " and not "))))
-    (native-inputs
-     (list python-defcon-bootstrap
-           python-fontpens-bootstrap
-           python-pytest
-           python-setuptools
-           python-setuptools-scm))
-    (propagated-inputs
-     (list python-fonttools-minimal
-           python-pyclipper))
-    (home-page "https://github.com/typemytype/booleanOperations")
-    (synopsis "Boolean operations on paths")
-    (description
-     "Boolean operations on paths which uses a super fast
-@url{http://www.angusj.com/delphi/clipper.php, polygon clipper library by
-Angus Johnson}.")
-    (license license:expat)))
-
 (define-public python-cffsubr
   (package
     (name "python-cffsubr")
@@ -620,6 +574,7 @@ for fontTools.")
      (list python-cython
            python-defcon
            python-pytest
+           python-pytest-runner
            python-setuptools
            python-setuptools-scm
            python-wheel
@@ -746,7 +701,8 @@ implementing the pen protocol for manipulating glyphs.")
       (modify-inputs native-inputs
         (append python-fontparts-bootstrap
                 python-fontpens-bootstrap
-                python-pytest))))))
+                python-pytest
+                python-pytest-runner))))))
 
 ;;; A variant used to break a cycle with python-fontpens.
 (define-public python-fontparts-bootstrap
@@ -1027,6 +983,7 @@ suite of the @code{psautohint} package.")
     (native-inputs
      (list psautohint-font-data
            python-pytest
+           python-pytest-cov
            python-pytest-xdist
            python-setuptools-scm
            python-setuptools
@@ -1870,10 +1827,6 @@ definitions.")
            pango
            potrace
            python
-           ;; XXX: Python 3.12 lacks distutils:
-           ;; ModuleNotFoundError: No module named 'distutils'
-           ;; Remove when package is updated.
-           python-setuptools-bootstrap
            zlib))
     (arguments
      (append

gnu/packages/freedesktop.scm

@@ -44,7 +44,6 @@
 ;;; Copyright © 2025 wvlab <me@wvlab.xyz>
 ;;; Copyright © 2025 jgart <jgart@dismail.de>
 ;;; Copyright © 2026 Daniel Littlewood <dan@danielittlewood.xyz>
-;;; Copyright © 2026 Luis Guilherme Coelho <lgcoelho@disroot.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -75,6 +74,7 @@
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system qt)
   #:use-module (guix search-paths)
@@ -141,6 +141,7 @@
   #:use-module (gnu packages rsync)
   #:use-module (gnu packages rust)
   #:use-module (gnu packages rust-apps)
+  #:use-module (gnu packages rust-crates)
   #:use-module (gnu packages samba)
   #:use-module (gnu packages serialization)
   #:use-module (gnu packages sqlite)
@@ -747,7 +748,7 @@ other applications that need to directly deal with input devices.")
            python-pytest
            python-structlog
            python-pyaml
-           valgrind/pinned))
+           valgrind/interactive))
     (home-page "https://libinput.pages.freedesktop.org/libei/")
     (synopsis "Emulated Input protocol implementation")
     (description
@@ -1378,43 +1379,41 @@ For information about libevdev, see:
     (license license:expat)))
 
 (define-public python-pyxdg
-  ;; Latest unreleased commits add Python 3.12, 3.14 and 3.15 support.
-  (let ((commit "63033ac306aa26d32e1439417e59ae8f8a4c9820")
-        (revision "0"))
-    (package
-      (name "python-pyxdg")
-      (version "0.28")
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-                (url "https://gitlab.freedesktop.org/xdg/pyxdg")
-                (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32
-           "10wk95rmcr2fglmvmv1a6ad9hkw9587r0rlww0gq6kbfz85whgmd"))))
-      (build-system pyproject-build-system)
-      (arguments
-       (list
-        #:phases
-        #~(modify-phases %standard-phases
-            (add-before 'check 'pre-check
-              (lambda _
-                (setenv "XDG_DATA_DIRS"
-                        (string-append #$(this-package-native-input "shared-mime-info")
-                                       "/share/")))))))
-      (native-inputs
-       (list shared-mime-info
-             hicolor-icon-theme
-             python-pytest
-             python-setuptools))
-      (home-page "https://www.freedesktop.org/wiki/Software/pyxdg")
-      (synopsis "Implementations of freedesktop.org standards in Python")
-      (description
-       "PyXDG is a collection of implementations of freedesktop.org standards in
+  (package
+    (name "python-pyxdg")
+    (version "0.28")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "pyxdg" version))
+       (sha256
+        (base32
+         "1d48bqwkbnpid80cpwz6h62i112laxl0ivpj58hdyd79fhqbnrrj"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      ;; Tests failing with error: AssertionError: 'image' != 'inode'
+      #~(list "--deselect=test/test_mime.py::MimeTest::test_get_type"
+              "--deselect=test/test_mime.py::MimeTest::test_get_type2")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'check 'pre-check
+            (lambda _
+              (setenv "XDG_DATA_DIRS"
+                      (string-append #$(this-package-native-input "shared-mime-info")
+                                     "/share/")))))))
+    (native-inputs
+     (list shared-mime-info
+           hicolor-icon-theme
+           python-pytest
+           python-setuptools))
+    (home-page "https://www.freedesktop.org/wiki/Software/pyxdg")
+    (synopsis "Implementations of freedesktop.org standards in Python")
+    (description
+     "PyXDG is a collection of implementations of freedesktop.org standards in
 Python.")
-      (license license:lgpl2.0))))
+    (license license:lgpl2.0)))
 
 (define-public hyprland-protocols
   (package
@@ -1972,10 +1971,6 @@ message bus.")
          "-Dsystemdsystemunitdir=/tmp/empty")
        #:phases
        (modify-phases %standard-phases
-         (add-after 'unpack 'fix-python-incompatibilities
-           (lambda _
-             (substitute* (find-files "tests" "\\.py$")
-               (("assertEquals") "assertEqual"))))
          (add-after 'unpack 'patch-paths
            (lambda* (#:key inputs #:allow-other-keys)
              (substitute* "meson_post_install.py"
@@ -2183,7 +2178,7 @@ which speak the Qualcomm MSM Interface (QMI) protocol.")
            libxslt                      ;for xsltproc
            pkg-config
            python-minimal
-           python-dbus                  ;for test
+           python-dbus-1.2              ;for test
            python-pygobject             ;for test
            vala))
     (propagated-inputs
@@ -2377,7 +2372,7 @@ different sorts of messages in different formats.")
           (base32 "02wb61h2k3hhis5y2xi5rhc6pmikd13x722hk620sqb9b3m5pn3s"))))
       (build-system gnu-build-system)
       (native-inputs (list autoconf automake libtool pkg-config))
-      (inputs (list libxslt python-wrapper python-dbus))
+      (inputs (list libxslt python-wrapper python-dbus-1.2))
       (propagated-inputs (list telepathy-glib))
       (home-page "https://telepathy.freedesktop.org/")
       (synopsis "Telepathy IRC connection manager")
@@ -3480,45 +3475,6 @@ remote-desktop @code{xdg-desktop-portal} interfaces for wlroots based
 compositors.")
     (license license:expat)))
 
-(define-public xdg-desktop-portal-termfilechooser
-  (package
-    (name "xdg-desktop-portal-termfilechooser")
-    (version "1.3.0")
-    (source
-      (origin
-        (method git-fetch)
-        (uri (git-reference
-              (url "https://github.com/hunkyburrito/xdg-desktop-portal-termfilechooser")
-              (commit (string-append "v" version))))
-        (file-name (git-file-name name version))
-        (sha256
-         (base32 "1wvmwl678fr5pxz7x248pm5v4jd3bycz8nqa2q87akys5b9d1xpd"))))
-    (build-system meson-build-system)
-    (arguments
-      (list #:phases
-            #~(modify-phases %standard-phases
-                (add-after 'install 'fix-paths
-                  (lambda* (#:key inputs #:allow-other-keys)
-                    (let ((sed (search-input-file inputs "/bin/sed")))
-                      (substitute* (find-files #$output "-wrapper\\.sh")
-                        ((" sed") (string-append " " sed)))))))))
-    (native-inputs
-      (list cmake-minimal
-            pkg-config
-            scdoc))
-    (inputs
-      (list basu
-            libinih
-            sed))
-    (home-page "https://github.com/hunkyburrito/xdg-desktop-portal-termfilechooser")
-    (synopsis "@code{xdg-desktop-portal} backend for choosing files with your
-favorite terminal file chooser")
-    (description
-     "This package provides a backend implementation for xdg-desktop-portal that
-allows using your preferred terminal file manager as file chooser in other
-applications.")
-    (license license:expat)))
-
 (define-public poweralertd
   (package
     (name "poweralertd")

gnu/packages/ftp.scm

@@ -7,7 +7,6 @@
 ;;; Copyright © 2021 David Larsson <david.larsson@selfhosted.xyz>
 ;;; Copyright © 2021 Guillaume Le Vaillant <glv@posteo.net>
 ;;; Copyright © 2022 Jai Vetrivelan <jaivetrivelan@gmail.com>
-;;; Copyright © 2026 Artyom V. Poptsov <poptsov.artyom@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -184,7 +183,7 @@ FTP browser, as well as non-interactive commands such as @code{ncftpput} and
 (define-public weex
   (package
     (name "weex")
-    (version "2.8.3")
+    (version "2.8.2")
     (source
       (origin
         (method url-fetch)
@@ -193,21 +192,8 @@ FTP browser, as well as non-interactive commands such as @code{ncftpput} and
                          "/weex_" version ".tar.gz"))
         (sha256
           (base32
-           "00qnw5q2i0xa2a51jp5737r3jx959rl1gbi9flpwin8s8ymqd9bj"))))
+            "1ir761hjncr1bamaqcw9j7x57xi3s9jax3223bxwbq30a0vsw1pd"))))
     (build-system gnu-build-system)
-    (arguments
-     (list
-      #:configure-flags #~(list "--disable-dependency-tracking")
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'patch-/bin/sh
-            (lambda* (#:key inputs #:allow-other-keys)
-              (substitute* "po/Makefile.in.in"
-                (("/bin/sh")
-                 (search-input-file inputs "/bin/sh")))
-              (substitute* "intl/Makefile.in"
-                (("/bin/sh")
-                 (search-input-file inputs "/bin/sh"))))))))
     (native-inputs
      (list automake autoconf gettext-minimal))
     (home-page "https://weex.sourceforge.net/")

gnu/packages/game-development.scm

@@ -70,6 +70,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system go)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system renpy)
   #:use-module (guix build-system scons)
   #:use-module (gnu packages)
@@ -557,7 +558,7 @@ PCM data.")
 (define-public nml
   (package
     (name "nml")
-    (version "0.9.0")
+    (version "0.8.1")
     (source
      (origin
        (method git-fetch)
@@ -566,7 +567,7 @@ PCM data.")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1kn70sskwpl2wcjlkdvxqja04khjb0vwwkgnyr67df1q3mga6l8m"))))
+        (base32 "03qrpnv2r2kjjfqkc67sqjzxq59li7vb1jhbdhgif8kf2x92805k"))))
     (arguments
      (list
       #:phases
@@ -1750,16 +1751,13 @@ color switches, and many more, with multiple options to customize.")
 (define-public python-pygame-ce
   (package
     (name "python-pygame-ce")
-    (version "2.5.7")
+    (version "2.5.5")
     (source
      (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/pygame-community/pygame-ce")
-              (commit version)))
-       (file-name (git-file-name name version))
+       (method url-fetch)
+       (uri (pypi-uri "pygame_ce" version))
        (sha256
-        (base32 "1awvs4wa9fgm8xldsxzdx1knijjpzz560lzj3rjvks3gcw8szhzx"))))
+        (base32 "0sxfchimdg606z65qychgvm66mq0aybs2isxsqb5zqy64g19gwm7"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -2393,47 +2391,6 @@ games.")
     (home-page "https://openmw.org")
     (license license:gpl3)))
 
-(define-public jolt-physics
-  (package
-    (name "jolt-physics")
-    (version "5.5.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/jrouwe/JoltPhysics")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0dzqi4mxrzg5cyf5k8rdlb078939ib849n7gs6014d3ljymf839r"))
-       (modules '((guix build utils)))
-       ;; Unbundle Roboto font.
-       (snippet
-        '(begin
-           (delete-file-recursively "Assets/Fonts")
-           (substitute* "TestFramework/TestFramework.cmake"
-             ((".*Roboto-Regular\\.ttf.*") ""))))))
-    (build-system cmake-build-system)
-    (arguments
-     (list
-      #:configure-flags
-      #~(list "-DBUILD_SHARED_LIBS=ON")
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'configure 'change-directory
-            (lambda _
-              (chdir "Build")))
-          (add-after 'install 'change-directory
-            (lambda _
-              (chdir ".."))))))
-    (home-page "https://github.com/jrouwe/JoltPhysics")
-    (synopsis "Rigid body physics and collision detection library")
-    (description
-     "Jolt Physics is a multi core friendly rigid body physics and collision
-detection library, written in C++.  It is suitable for games and VR
-applications.")
-    (license license:expat)))
-
 (define-public godot-lts
   (package
     (name "godot")
@@ -3622,76 +3579,63 @@ physics engine is just a system for procedural animation.")
 (define-public libtcod
   (package
     (name "libtcod")
-    (version "2.2.2")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/libtcod/libtcod")
-             (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1zl1w4kpiiarh0f1q3j95k9vp90fx98hxl1ykma9hlkfw33srmy0"))
-       (modules '((guix build utils)))
-       (snippet
-        '(begin
-           (rmdir "vcpkg")
-           (with-directory-excursion "src"
-             ;; Delete the bundled third party libraries.
-             (with-directory-excursion "vendor"
-               (for-each delete-file
-                         '("khrplatform.h"
-                           "lodepng.c"
-                           "lodepng.h"
-                           "stb_ds.h"
-                           "stb_truetype.h"))
-               (for-each delete-file-recursively '("utf8proc" "zlib")))
-             ;; Do not fetch the libraries from their Git repositories.
-             ;; Instead, find the required packages available in Guix and link
-             ;; them.
-             (substitute* "CMakeLists.txt"
-               (("FetchContent_MakeAvailable\\(SDL3\\)")
-                "find_package(SDL3 REQUIRED)")
-               (("FetchContent_MakeAvailable\\(ZLIB\\)")
-                "find_package(ZLIB REQUIRED)")
-               (("FetchContent_MakeAvailable\\(lodepng-c\\)")
-                "find_library(LODEPNG_LIB NAMES lodepng REQUIRED)")
-               (("lodepng-c") "${LODEPNG_LIB}")
-               (("FetchContent_MakeAvailable\\(utf8proc\\)")
-                (string-append "find_package(PkgConfig REQUIRED)\n"
-                               "    pkg_check_modules(UTF8PROC REQUIRED"
-                               " libutf8proc)"))
-               (("utf8proc\\:\\:utf8proc") "utf8proc")
-               ((".*FetchContent_MakeAvailable\\(Stb.*") "")))))))
-    (build-system cmake-build-system)
+    (version "1.15.1")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/libtcod/libtcod")
+                    (commit version)))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "0pzr8ajmbqvh43ldjajx962xirj3rf8ayh344p6mqlrmb8gxrfr5"))
+              (modules '((guix build utils)))
+              (snippet '(begin
+                          (delete-file-recursively "src/vendor/utf8proc")
+                          (delete-file-recursively "src/vendor/zlib")
+                          (delete-file "src/vendor/stb_truetype.h")
+                          (delete-file "src/vendor/stb_sprintf.h")
+                          (delete-file "src/vendor/lodepng.cpp")
+                          (delete-file "src/vendor/lodepng.h")
+
+                          (substitute* "buildsys/autotools/sources.am"
+                            (("\\.\\./\\.\\./src/vendor/lodepng\\.cpp \\\\\n") "")
+                            (("\\.\\./\\.\\./src/vendor/stb\\.c \\\\")
+                             "../../src/vendor/stb.c")
+                            (("\\.\\./\\.\\./src/vendor/utf8proc/utf8proc\\.c") ""))
+
+                          (substitute* "src/libtcod/sys_sdl_img_png.cpp"
+                            (("\\.\\./vendor/") ""))
+
+                          (substitute* '("src/libtcod/color/canvas.cpp"
+                                         "src/libtcod/sys_sdl_img_png.cpp"
+                                         "src/libtcod/tileset/truetype.cpp"
+                                         "src/libtcod/tileset/tilesheet.cpp")
+                            (("\\.\\./\\.\\./vendor/") ""))
+
+                          (substitute* "src/libtcod/console/printing.cpp"
+                            (("\\.\\./\\.\\./vendor/utf8proc/") ""))
+                          #t))))
+    (build-system gnu-build-system)
     (arguments
-     (list
-      #:configure-flags
-      #~(list "-DLIBTCOD_TESTS=ON"
-              "-DBUILD_SHARED_LIBS=ON")
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'patch-commands
-            (lambda* (#:key inputs #:allow-other-keys)
-              (substitute* "src/libtcod/tileset_fallback.c"
-                (("popen\\(\"fc-match")
-                 (string-append "popen(\""
-                                (search-input-file inputs "/bin/fc-match"))))))
-          (replace 'check
-            (lambda* (#:key tests? #:allow-other-keys)
-              (when tests?
-                (with-directory-excursion "tests"
-                  (copy-recursively "../../source/data" "data")
-                  (setenv "LD_LIBRARY_PATH" "..")
-                  (setenv "XDG_RUNTIME_DIR" (getcwd))
-                  (setenv "HOME" (getcwd))
-                  (invoke "./unittest"
-                          ;; No video device available.
-                          "~[!nonportable]"))))))))
+     `(#:configure-flags '("--with-gnu-ld"
+                           "LIBS=-lutf8proc -llodepng")
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'change-to-build-dir
+           (lambda _
+             (chdir "buildsys/autotools")
+             (patch-shebang "get_version.py"))))))
     (native-inputs
-     (list catch2-3.8 pkg-config))
+     (list autoconf
+           automake
+           libtool
+           python
+           pkg-config
+           stb-sprintf
+           stb-truetype))
     (inputs
-     (list fontconfig lodepng/c sdl3 stb-truetype utf8proc zlib))
+     (list lodepng sdl2 utf8proc zlib))
     (home-page "https://github.com/libtcod/libtcod")
     (synopsis "Library specifically designed for writing roguelikes")
     (description