Maxim Cournoyer 4e01bc440a gnu: python-pysam: Update to version 0.16.0.1. ...

The check phase was failing with:

starting phase `check'
make: Entering directory '...drv-0/python-pysam-0.15.1-checkout/tests/pysam_data'
samtools faidx ex1.fa
samtools import ex1.fa.fai ex1.sam.gz ex1.bam
[main] "samtools import" has been removed. Please use "samtools view" instead.
make: *** [Makefile:56: ex1.bam] Error 1

* gnu/packages/bioinformatics.scm (python-pysam): Update to version 0.16.0.1.
[phases]{check}: Delete a couple more failing test files.
[native-inputs]: Add python-pytest.

2020-11-13 10:17:00 -05:00

..

bootloader

system: Generate grub locale directory for grub.cfg.

2020-11-01 01:14:36 +01:00

build

shepherd: Remove dependency on (guix utils).

2020-11-05 16:13:50 +01:00

installer

installer: parted: Add debug output.

2020-11-08 19:40:44 +01:00

machine

machine: ssh: Do not import the host (guix config).

2020-11-09 23:27:09 +01:00

packages

gnu: python-pysam: Update to version 0.16.0.1.

2020-11-13 10:17:00 -05:00

services

services: nginx: Re-introduce server-names-hash-bucket-size.

2020-11-09 22:53:50 +01:00

system

vm: expression->derivation-in-linux-vm: Run in a UTF-8 locale.

2020-11-10 21:49:15 +01:00

tests

tests: nfs-root-fs: Use the right store file name.

2020-11-07 12:48:24 +01:00

artwork.scm

…

bootloader.scm

…

ci.scm

ci: Restore license handling.

2020-11-02 21:02:39 +01:00

image.scm

image: Add image-type support.

2020-09-30 10:47:59 +02:00

installer.scm

installer: Call setlocale after init gettext.

2020-10-18 17:55:40 +02:00

local.mk

gnu: audiofile: Shorten patch file names.

2020-11-10 17:49:14 +01:00

machine.scm

…

packages.scm

…

services.scm

services: provenance: Wrap config file name in 'assume-valid-file-name'.

2020-10-16 15:00:50 +02:00

system.scm

system: Change comment wording.

2020-11-02 18:22:33 +01:00

tests.scm

…