Ricardo Wurmus 3071ef9397 guix: Update to Bioconductor 3.21. ...

* guix/build-system/r.scm (bioconductor-uri): Update version in URI to 3.21.
* guix/import/cran.scm (%bioconductor-version): Update to 3.21.

Change-Id: I216576d42d013a00310cc2230e89567ffb1487a2

2025-05-12 08:53:55 +02:00

..

build

gnu: Make modular TeX Live reproducible.

2025-05-06 11:25:06 +02:00

build-system

guix: Update to Bioconductor 3.21.

2025-05-12 08:53:55 +02:00

import

guix: Update to Bioconductor 3.21.

2025-05-12 08:53:55 +02:00

platforms

guix: Add loongarch platform.

2025-01-25 01:05:22 +08:00

scripts

environment, home: Make /tmp writable.

2025-05-06 12:22:34 +02:00

store

deduplication: Detect holes and create sparse files.

2024-05-25 16:44:42 +02:00

tests

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android-repo-download.scm

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avahi.scm

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base16.scm

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base32.scm

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base64.scm

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build-system.scm

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bzr-download.scm

download: Honor ‘GUIX_DOWNLOAD_METHODS’ environment variable.

2024-03-09 18:55:50 +01:00

cache.scm

cache: Remove unused import.

2025-04-14 17:31:49 +02:00

channels.scm

channels: Add symref support.

2025-04-25 20:25:27 +02:00

ci.scm

ci: Catch error for unreachable channel with substitutes.

2024-07-23 16:24:38 +02:00

colors.scm

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combinators.scm

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config.scm.in

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cpio.scm

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cpu.scm

guix: cpu: Add detection for znver5.

2024-09-30 13:38:33 +03:00

cve.scm

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cvs-download.scm

download: Honor ‘GUIX_DOWNLOAD_METHODS’ environment variable.

2024-03-09 18:55:50 +01:00

d3.v3.js

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deprecation.scm

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derivations.scm

derivations: Fix indentation.

2025-02-22 23:55:24 +09:00

describe.scm

ui: Search channels for guix extensions

2025-03-08 17:40:58 +01:00

diagnostics.scm

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discovery.scm

Autoload (guix build syscalls).

2024-04-15 22:36:42 +02:00

docker.scm

guix: Fix typos.

2025-02-20 11:54:55 -08:00

download.scm

download: Remove unreachable mirror URL.

2025-04-03 22:28:10 +09:00

elf.scm

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ftp-client.scm

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gexp.scm

gexp: ‘local-file’ expands its argument only once.

2025-04-06 11:23:07 +02:00

git-authenticate.scm

guix: Avoid ‘fdatasync’ call for caches and regular files.

2025-04-14 17:31:50 +02:00

git-download.scm

git-download: Use C.UTF-8 and remove dependency on ‘glibc-utf8-locales’.

2024-08-31 10:44:46 +02:00

git.scm

git: Add support for symbolic references.

2025-04-25 20:25:28 +02:00

glob.scm

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gnu-maintenance.scm

gnu-maintenance: Better fix for 'guix refresh --update'.

2025-03-12 21:32:04 +09:00

gnupg.scm

gnupg: Automatically fallback to 'always policy when non-interactive.

2025-02-28 13:36:44 +09:00

grafts.scm

grafts: Allow file-like objects in the ‘replacement’ field of <graft>.

2025-01-28 14:56:14 +01:00

graph.js

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graph.scm

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hash.scm

scripts: hash: Handle repository with different VCS folders.

2024-07-23 16:27:27 +02:00

hg-download.scm

hg-download: Pass strings to ‘hg-fetch’.

2024-06-12 09:45:44 +02:00

http-client.scm

guix: Avoid ‘fdatasync’ call for caches and regular files.

2025-04-14 17:31:50 +02:00

i18n.scm

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inferior.scm

inferior: Add #:verify-certificate? to ‘cached-channel-instance’.

2024-12-25 23:51:10 +01:00

ipfs.scm

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least-authority.scm

least-authority: Export default preserved environment variables.

2025-04-19 21:13:21 +09:00

licenses.scm

licenses: Add blue-oak1.0.0.

2024-11-20 18:01:35 +08:00

lint.scm

gnu: Rename texlive-updmap.cfg' into texlive-local-tree'.

2025-05-06 11:25:06 +02:00

man-db.scm

man-db: Support mdoc-formatted man pages.

2025-04-11 12:18:02 +02:00

memoization.scm

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modules.scm

modules: ‘file-name->module-name’ strips leading “./”.

2024-07-18 17:31:19 +02:00

monad-repl.scm

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monads.scm

gexp: ‘with-parameters’ properly handles ‘%graft?’.

2025-03-05 00:28:49 +01:00

nar.scm

Autoload (guix build syscalls).

2024-04-15 22:36:42 +02:00

narinfo.scm

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openpgp.scm

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packages.scm

packages: Add riscv64-linux to %cuirass-supported-systems.

2025-04-25 20:25:27 +02:00

pki.scm

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platform.scm

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profiles.scm

gnu: profiles.scm: Ignore ls-R databases when building font maps.

2025-05-06 11:25:06 +02:00

profiling.scm

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progress.scm

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quirks.scm

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read-print.scm

read-print: Attempt to indent package arguments less.

2025-02-09 01:00:00 +01:00

records.scm

records: Fix ABI check in cross-compilation context.

2024-11-18 10:58:42 +01:00

remote.scm

remote: Do not double-quote the repl-command.

2024-12-12 12:52:08 +01:00

repl.scm

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rpm.scm

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scripts.scm

Autoload (guix build syscalls).

2024-04-15 22:36:42 +02:00

search-paths.scm

search-paths: $Add XDG_DATA_DIRS.

2025-03-18 16:12:38 +09:00

self.scm

self: Install systemd ‘.service’ files.

2025-04-20 17:58:11 +02:00

serialization.scm

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sets.scm

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ssh.scm

ssh: Add #:strict-host-key-check? option.

2025-02-09 18:20:42 +01:00

status.scm

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store.scm

gexp: ‘with-parameters’ properly handles ‘%graft?’.

2025-03-05 00:28:49 +01:00

substitutes.scm

guix: Avoid ‘fdatasync’ call for caches and regular files.

2025-04-14 17:31:50 +02:00

svn-download.scm

guix: download-multi-svn-to-store: Allow exporting from base URL.

2024-08-31 10:45:36 +02:00

swh.scm

swh: Specify 'extid_version' when looking up by external ID.

2024-06-26 23:56:56 +02:00

tests.scm

guix: tests: Increase timeout for test store connection.

2024-08-01 10:32:31 +01:00

transformations.scm

transformations: Git source transformations honour RECURSIVE?.

2025-05-05 12:15:47 +02:00

ui.scm

ui: Allow evaluating multi-expressions strings with read/eval.

2025-05-09 23:05:26 +09:00

upstream.scm

upstream: Do not update to same version.

2025-04-27 13:01:48 +01:00

utils.scm

utils: Add #:sync? parameter to ‘with-atomic-file-output’.

2025-04-14 17:31:49 +02:00

workers.scm

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