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9dcb4d22a4ed004db02f4443b697caf5f29531e0
guix/gnu/packages
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Ricardo Wurmus 9dcb4d22a4 gnu: pigx-bsseq: Use pandoc-1. 
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
2018-03-19 11:07:55 +01:00
..
aux-files
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bootstrap
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patches
gnu: java-simple-xml: Fix java8 test failures.
2018-03-18 00:02:05 +01:00
abduco.scm
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abiword.scm
gnu: abiword: Disable duplicate icon cache generation.
2018-03-04 15:43:46 +01:00
accessibility.scm
gnu: footswitch: Update to 0.1-2.deedd87.
2018-03-04 18:03:45 +01:00
acct.scm
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acl.scm
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ada.scm
gnu: Add python2-libadalang.
2018-03-16 22:44:36 +01:00
admin.scm
gnu: intel-gpu-tools: Supported only on x86_64-linux and i686-linux.
2018-03-17 00:44:34 -04:00
adns.scm
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agda.scm
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aidc.scm
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algebra.scm
gnu: Add java-jtransforms.
2018-03-03 21:27:30 +01:00
android.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
animation.scm
gnu: papagayo: Declare a source file-name.
2018-03-04 11:01:39 +02:00
anthy.scm
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apl.scm
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apr.scm
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aspell.scm
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assembly.scm
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astronomy.scm
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attr.scm
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audio.scm
gnu: liblo: Mark up description.
2018-03-04 18:03:43 +01:00
augeas.scm
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autogen.scm
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autotools.scm
gnu: autoconf-archive: Update to 2018.03.13.
2018-03-15 19:11:14 +01:00
avahi.scm
gnu: nss-mdns: Adjust Avahi socket file name.
2018-03-18 00:02:06 +01:00
avr.scm
…
axoloti.scm
…
backup.scm
gnu: Fix Borg crashes with Python msgpack > 0.5
2018-02-28 23:43:23 -05:00
base.scm
Revert "gnu: Use patched static bash in glibc replacement."
2018-03-14 16:28:22 +01:00
bash.scm
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bdw-gc.scm
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benchmark.scm
…
bioconductor.scm
gnu: Add r-hpar.
2018-03-02 23:24:57 +01:00
bioinformatics.scm
gnu: pigx-bsseq: Use pandoc-1.
2018-03-19 11:07:55 +01:00
bison.scm
…
bittorrent.scm
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boost.scm
gnu: Add boost@1.66.0.
2018-03-04 17:54:40 +01:00
bootloaders.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
bootstrap.scm
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build-tools.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
busybox.scm
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c.scm
…
calcurse.scm
gnu: calcurse: Update to 4.3.0.
2018-03-14 09:10:47 +01:00
calendar.scm
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ccache.scm
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cdrom.scm
gnu: libburn: Update to 1.4.8.
2018-03-15 19:11:16 +01:00
certs.scm
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check.scm
gnu: cppcheck: Update to 1.82.
2018-03-07 15:37:13 +01:00
chemistry.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
chez.scm
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ci.scm
gnu: cuirass: Update to aa4c778.
2018-03-01 17:38:55 +01:00
cinnamon.scm
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cmake.scm
gnu: Add cmake@3.11.
2018-03-04 17:54:40 +01:00
cobol.scm
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code.scm
gnu: Use the CMake build system's #:build-type key.
2018-03-17 16:37:28 +01:00
commencement.scm
Revert "gnu: Add replacement for static-bash-for-glibc."
2018-03-14 16:28:22 +01:00
compression.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
compton.scm
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conkeror.scm
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conky.scm
gnu: conky: Remove redundant MKDIR-P.
2018-03-03 13:27:17 +01:00
connman.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
cook.scm
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cpio.scm
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cpp.scm
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cppi.scm
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cran.scm
gnu: Add r-abbyyr.
2018-03-19 01:06:41 +01:00
cross-base.scm
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crypto.scm
gnu: keyutils: Update to 1.5.10.
2018-03-07 15:37:13 +01:00
cryptsetup.scm
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cups.scm
…
curl.scm
gnu: curl: Update replacement to 7.59.0 [security fixes].
2018-03-14 16:48:03 +01:00
cyrus-sasl.scm
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databases.scm
gnu: Use the CMake build system's #:build-type key.
2018-03-17 16:37:28 +01:00
datamash.scm
gnu: datamash: Update to 1.3.
2018-03-18 00:02:06 +01:00
datastructures.scm
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dav.scm
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dc.scm
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debian.scm
gnu: Add debootstrap.
2018-03-12 21:54:44 +02:00
debug.scm
gnu: c-reduce: Use HTTPS home page.
2018-03-07 15:37:11 +01:00
dejagnu.scm
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dico.scm
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dictionaries.scm
gnu: dictionaries: Add copyright line.
2018-03-03 14:23:17 +01:00
digest.scm
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direct-connect.scm
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disk.scm
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display-managers.scm
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django.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
djvu.scm
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dns.scm
gnu: bind: Use INVOKE.
2018-03-15 19:11:13 +01:00
docbook.scm
gnu: dblatex: Update to 0.3.10.
2018-02-28 04:13:19 +01:00
docker.scm
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documentation.scm
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dunst.scm
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dvtm.scm
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ebook.scm
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ed.scm
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education.scm
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electronics.scm
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elf.scm
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elixir.scm
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emacs.scm
gnu: Use HTTPS for r-project.org home pages.
2018-03-17 16:37:20 +01:00
embedded.scm
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emulators.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
enchant.scm
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engineering.scm
gnu: Use the CMake build system's #:build-type key.
2018-03-17 16:37:28 +01:00
enlightenment.scm
gnu: enlightenment: Use 'loginctl' for system actions.
2018-03-10 22:55:42 +02:00
entr.scm
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erlang.scm
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fabric-management.scm
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fcitx.scm
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figlet.scm
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file-systems.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
file.scm
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finance.scm
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firmware.scm
gnu: ovmf: Fix build and add FIXME.
2018-03-06 08:27:07 +01:00
flashing-tools.scm
gnu: Use the CMake build system's #:build-type key.
2018-03-17 16:37:28 +01:00
flex.scm
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fltk.scm
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fonts.scm
gnu: Add IBM Plex font.
2018-03-07 11:22:42 +01:00
fontutils.scm
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forth.scm
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fpga.scm
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freedesktop.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
freeipmi.scm
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fribidi.scm
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ftp.scm
…
fvwm.scm
gnu: fvwm: Add '.desktop' file.
2018-03-18 00:02:05 +01:00
game-development.scm
gnu: tiled: Update to 1.1.3.
2018-03-13 20:33:42 -04:00
games.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
gawk.scm
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gcal.scm
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gcc.scm
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gd.scm
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gdb.scm
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geo.scm
gnu: Add r-ggmap.
2018-03-15 10:57:52 -04:00
gettext.scm
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ghostscript.scm
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gimp.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
gkrellm.scm
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gl.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
glib.scm
gnu: python2-gobject@2: Update to 2.28.7
2018-03-07 14:57:10 +01:00
gnome.scm
gnu: shotwell: Update to 0.28.0.
2018-03-18 10:35:23 +00:00
gnu-doc.scm
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gnu-pw-mgr.scm
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gnucash.scm
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gnunet.scm
gnu: 'autoconf-wrapper' is no longer a procedure.
2018-03-09 23:24:34 +01:00
gnupg.scm
gnu: Add jetring.
2018-03-12 21:54:43 +02:00
gnustep.scm
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gnuzilla.scm
gnu: icecat: Fix CVE-2018-{5146,5147}, etc.
2018-03-17 21:44:23 -04:00
gobby.scm
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golang.scm
gnu: Add go-github-com-hashicorp-hcl.
2018-03-17 23:04:29 +00:00
gperf.scm
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gprolog.scm
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gps.scm
gnu: gpscorrelate: Declare a source file-name.
2018-03-13 20:17:10 +02:00
graph.scm
gnu: Use HTTPS for r-project.org home pages.
2018-03-17 16:37:20 +01:00
graphics.scm
gnu: Use the CMake build system's #:build-type key.
2018-03-17 16:37:28 +01:00
graphviz.scm
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groff.scm
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gsasl.scm
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gstreamer.scm
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gtk.scm
gnu: gtksourceview: Update to 3.24.7.
2018-03-15 19:11:15 +01:00
guile-wm.scm
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guile.scm
gnu: guile-git: Update to 2bb9fbb.
2018-03-18 00:02:06 +01:00
gv.scm
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gxmessage.scm
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ham-radio.scm
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haskell-check.scm
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haskell-crypto.scm
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haskell-web.scm
gnu: Add ghc-aeson-for-pandoc-1.
2018-03-13 20:01:54 +01:00
haskell.scm
gnu: Add ghc-pandoc-citeproc-with-pandoc-1.
2018-03-19 11:07:54 +01:00
hexedit.scm
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hugs.scm
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hurd.scm
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ibus.scm
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icu4c.scm
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idris.scm
gnu: idris: Provide the right versions of dependencies.
2018-03-15 23:46:16 +01:00
idutils.scm
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image-processing.scm
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image-viewers.scm
gnu: feh: Update to 2.25.1.
2018-03-08 12:25:05 +01:00
image.scm
gnu: Add r-jpeg.
2018-03-15 10:57:51 -04:00
imagemagick.scm
gnu: imagemagick: Update to 6.9.9-37.
2018-03-07 14:53:24 +01:00
indent.scm
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inklingreader.scm
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inkscape.scm
gnu: inkscape: Build with potrace support.
2018-03-17 05:06:32 +05:30
irc.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
iso-codes.scm
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java.scm
gnu: icedtea@3: Update to 3.7.0 [security fixes].
2018-03-16 10:53:10 -04:00
javascript.scm
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jemalloc.scm
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jrnl.scm
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julia.scm
gnu: arpack-ng: Update to 3.5.0; use 3.3.0 for julia.
2018-03-12 16:09:24 +01:00
kde-frameworks.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
kde.scm
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kerberos.scm
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key-mon.scm
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kodi.scm
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language.scm
gnu: perl-string-toidentifier-en: Update to 0.12.
2018-03-15 19:11:14 +01:00
ld-wrapper.in
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ldc.scm
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lego.scm
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less.scm
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lesstif.scm
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libbsd.scm
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libcanberra.scm
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libdaemon.scm
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libedit.scm
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libevent.scm
gnu: 'autoconf-wrapper' is no longer a procedure.
2018-03-09 23:24:34 +01:00
libffcall.scm
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libffi.scm
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libftdi.scm
gnu: libftdi: Use HTTPS home page.
2018-03-01 22:21:00 +01:00
libidn.scm
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libphidget.scm
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libreoffice.scm
gnu: libe-book: Update to 0.1.3.
2018-03-01 17:40:49 +01:00
libsigsegv.scm
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libunistring.scm
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libunwind.scm
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libusb.scm
gnu: libusb4java: Declare a source file-name.
2018-03-13 20:17:11 +02:00
license.scm
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lighting.scm
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linux.scm
gnu: Use the CMake build system's #:build-type key.
2018-03-17 16:37:28 +01:00
lirc.scm
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lisp.scm
gnu: sbcl-cl-uglify-js: Declare a source file-name.
2018-03-13 20:17:11 +02:00
llvm.scm
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logging.scm
gnu: 'autoconf-wrapper' is no longer a procedure.
2018-03-09 23:24:34 +01:00
lolcode.scm
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lout.scm
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lsof.scm
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lua.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
lxde.scm
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lxqt.scm
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m4.scm
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machine-learning.scm
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mail.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
make-bootstrap.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
man.scm
gnu: man-db: Update to 2.8.2.
2018-03-14 16:48:04 +01:00
markup.scm
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marst.scm
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mate.scm
gnu: 'autoconf-wrapper' is no longer a procedure.
2018-03-09 23:24:34 +01:00
maths.scm
gnu: Add ruby-asciimath.
2018-03-18 10:23:49 +00:00
maven.scm
gnu: Add maven-resolver-connector-basic.
2018-03-06 23:06:19 +01:00
mc.scm
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mcrypt.scm
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medical.scm
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mes.scm
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messaging.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
microcom.scm
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mingw.scm
gnu: mingw-w64: Update to 5.0.3.
2018-03-12 04:57:52 +01:00
moe.scm
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monitoring.scm
gnu: Add python-prometheus-client.
2018-03-17 20:44:50 +00:00
mono.scm
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moreutils.scm
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motti.scm
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mp3.scm
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mpd.scm
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mpi.scm
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mtools.scm
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multiprecision.scm
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music.scm
gnu: Use the CMake build system's #:build-type key.
2018-03-17 16:37:28 +01:00
musl.scm
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nano.scm
gnu: nano: Update to 2.9.4.
2018-03-08 20:29:20 +02:00
ncdu.scm
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ncurses.scm
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netpbm.scm
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nettle.scm
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networking.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
nfs.scm
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nickle.scm
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nim.scm
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ninja.scm
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node.scm
gnu: node: Use more unbundled dependencies.
2018-03-12 18:04:16 +01:00
noweb.scm
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ntp.scm
services: Add openntpd service.
2018-03-05 08:46:28 +02:00
nutrition.scm
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nvi.scm
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ocaml.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
ocr.scm
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onc-rpc.scm
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openbox.scm
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openldap.scm
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openstack.scm
gnu: python-oslotest: Update to 3.3.0.
2018-03-17 16:37:21 +01:00
orpheus.scm
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ots.scm
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package-management.scm
gnu: 'autoconf-wrapper' is no longer a procedure.
2018-03-09 23:24:34 +01:00
parallel.scm
gnu: slurm: Update to 17.11.3.
2018-03-08 09:07:28 +01:00
password-utils.scm
gnu: python-bcrypt: Update to 3.1.4.
2018-03-17 16:37:20 +01:00
patchutils.scm
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pciutils.scm
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pcre.scm
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pdf.scm
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pem.scm
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perl-check.scm
gnu: perl-test-harness: Update to 3.41.
2018-03-02 15:52:56 +01:00
perl-web.scm
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perl.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
photo.scm
gnu: Use the CMake build system's #:build-type key.
2018-03-17 16:37:28 +01:00
php.scm
gnu: php: Fix test failure.
2018-03-01 22:25:28 +01:00
pkg-config.scm
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plotutils.scm
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polkit.scm
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popt.scm
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pretty-print.scm
gnu: highlight: Don't hard-code Lua version.
2018-03-02 15:52:56 +01:00
profiling.scm
gnu: papi: Use HTTPS home page.
2018-03-05 17:32:08 +01:00
protobuf.scm
gnu: python-protobuf: Update to 3.5.2.
2018-03-17 16:37:21 +01:00
pth.scm
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pulseaudio.scm
gnu: pulsemixer: Declare a source file-name.
2018-03-13 20:17:12 +02:00
pumpio.scm
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pv.scm
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python-crypto.scm
gnu: python-asn1crypto: Declare a source file-name.
2018-03-13 20:17:12 +02:00
python-web.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
python.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
qt.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
ragel.scm
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rails.scm
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ratpoison.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
rdesktop.scm
gnu: Use the CMake build system's #:build-type key.
2018-03-17 16:37:28 +01:00
rdf.scm
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re2c.scm
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readline.scm
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regex.scm
gnu: re2: Update to 2018-03-01.
2018-03-06 18:23:42 +01:00
robotics.scm
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rrdtool.scm
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rsync.scm
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ruby.scm
gnu: Add ruby-ruby-engine.
2018-03-18 10:23:52 +00:00
rush.scm
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rust.scm
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samba.scm
gnu: cifs-utils: Update to 6.8.
2018-03-15 19:11:14 +01:00
sawfish.scm
gnu: 'autoconf-wrapper' is no longer a procedure.
2018-03-09 23:24:34 +01:00
scanner.scm
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scheme.scm
gnu: gambit-c: Update to 4.8.9.
2018-03-11 06:42:57 +01:00
screen.scm
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scribus.scm
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scsi.scm
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sdcc.scm
gnu: sdcc: Fix typo in description.
2018-03-01 22:21:02 +01:00
sdl.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
search.scm
gnu: tocc, libtocc: Use HTTPS home page.
2018-03-05 17:32:10 +01:00
security-token.scm
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selinux.scm
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serialization.scm
gnu: Use the CMake build system's #:build-type key.
2018-03-17 16:37:28 +01:00
serveez.scm
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shells.scm
gnu: zsh: Fix CVE-2018-{7548,7549}.
2018-03-10 12:30:53 -05:00
shellutils.scm
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simh.scm
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simulation.scm
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skarnet.scm
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skribilo.scm
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slang.scm
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smalltalk.scm
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sml.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
speech.scm
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spice.scm
gnu: usbredir: Declare a source file-name.
2018-03-13 21:48:26 +02:00
ssh.scm
gnu: dropbear: Update to 2018.76.
2018-02-28 22:58:23 +01:00
sssd.scm
gnu: sssd: Update to 1.16.1.
2018-03-11 06:42:57 +01:00
stalonetray.scm
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statistics.scm
gnu: Use HTTPS for r-project.org home pages.
2018-03-17 16:37:20 +01:00
storage.scm
gnu: ceph: Update to 12.2.4.
2018-03-04 17:54:40 +01:00
suckless.scm
gnu: dmenu: Update to 4.8.
2018-03-15 20:13:29 +01:00
swig.scm
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sync.scm
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syncthing.scm
gnu: Fix more ‘filesystem’ spellings.
2018-03-17 16:37:19 +01:00
syndication.scm
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synergy.scm
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task-management.scm
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tbb.scm
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tcl.scm
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telephony.scm
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terminals.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
terraform.scm
gnu: Add terraform-docs.
2018-03-17 23:04:29 +00:00
tex.scm
gnu: texlive-latex-type1cm: Fix description typo.
2018-03-17 16:37:25 +01:00
texinfo.scm
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text-editors.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
textutils.scm
gnu: python-editdistance: Use 'invoke'.
2018-03-13 21:48:28 +02:00
time.scm
gnu: time: Update to 1.9.
2018-03-13 20:17:06 +02:00
tls.scm
gnu: certbot: Update to 0.22.0.
2018-03-15 12:19:11 -04:00
tmux.scm
…
tor.scm
gnu: tor: Update to 0.3.2.10 [security fixes].
2018-03-03 21:31:08 +01:00
toys.scm
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tryton.scm
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tv.scm
…
uml.scm
…
unrtf.scm
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upnp.scm
…
uucp.scm
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valgrind.scm
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version-control.scm
gnu: git-test-sequence: Declare a source file-name.
2018-03-13 21:48:28 +02:00
video.scm
gnu: youtube-dl: Update to 2018.03.14.
2018-03-18 18:47:16 +01:00
vim.scm
…
virtualization.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
vpn.scm
gnu: vpnc-scripts: Declare a source file-name.
2018-03-13 21:48:28 +02:00
vulkan.scm
gnu: shaderc: Clean up package arguments.
2018-03-17 23:15:34 +02:00
w3m.scm
…
wdiff.scm
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web-browsers.scm
gnu: links, lynx, qutebrowser: Update phase style.
2018-03-07 15:37:13 +01:00
web.scm
gnu: Use the CMake build system's #:build-type key.
2018-03-17 16:37:28 +01:00
webkit.scm
gnu: webkitgtk: Use HTTPS for home page.
2018-03-14 18:23:46 +01:00
wget.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
wicd.scm
…
wine.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
wm.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
wordnet.scm
…
wv.scm
gnu: wv: Edit description.
2018-03-03 13:27:16 +01:00
wxwidgets.scm
…
xdisorg.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
xfce.scm
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xfig.scm
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xiph.scm
gnu: libvorbis: Replace with 1.3.6 [fixes CVE-2018-5146].
2018-03-16 19:28:57 +01:00
xml.scm
gnu: java-simple-xml: Fix java8 test failures.
2018-03-18 00:02:05 +01:00
xnee.scm
…
xorg.scm
gnu: Fix common unquote typos.
2018-03-17 16:37:27 +01:00
zile.scm
gnu: 'autoconf-wrapper' is no longer a procedure.
2018-03-09 23:24:34 +01:00