Nicolas Graves
db14ce5c4d
gnu: python-bed-reader: Fix build and enable tests.
* gnu/packages/bioinformatics.scm (python-bed-reader): Fix build and enable tests.
[source]{snippet}: Delete bundled website-related javascript.
{patches}: Use the store-cached instead of pooch-cached samples.
[arguments]{tests?}: Enable them.
{cargo-test-flags}: Skip doc tests. Skip failing tests.
{cargo-inputs}: Improve style.
{cargo-development-inputs}: Improve style.
{phases}: Add phases 'set-data-path, 'patch-data-path to use
store-cached samples for library and tests. Rewrite phase
'prepare-python-module to rely more on the existing info in
pyproject.toml. Rewrite phase 'check-python entirely, and
marginaly rewrite phase 'install-python-library to match 'check-python
phase style.
{modules}: Adapt accordingly.
{propagated-inputs}: Remove python-pooch. Add python-scipy.
(bed-sample-files): Add origin, used in python-bed-reader.
* gnu/packages/patches/python-bed-reader-use-store-samples.patch: Add
patch.
* gnu/local.mk: Record patch.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-04-16 11:46:28 +02:00
..
2024-12-19 16:06:26 -08:00
2024-12-19 16:06:26 -08:00
2025-01-22 18:22:24 +08:00
2025-03-02 12:53:58 -05:00
2024-12-21 20:22:52 +01:00
2025-01-16 00:38:11 +08:00
2024-12-22 15:37:35 +02:00
2024-12-22 15:37:35 +02:00
2025-04-14 17:27:29 +02:00
2024-12-29 11:33:36 +01:00
2025-01-19 00:39:18 +01:00
2025-01-26 22:59:59 +09:00
2024-12-24 00:46:02 +08:00
2025-01-19 13:06:09 +01:00
2025-01-19 13:06:08 +01:00
2025-01-19 13:06:08 +01:00
2025-03-01 11:24:09 +01:00
2025-03-01 11:24:09 +01:00
2025-01-21 23:42:18 +00:00
2025-03-10 00:38:05 +01:00
2025-02-13 00:07:21 +09:00
2025-01-27 14:42:40 +01:00
2025-01-12 18:50:52 +01:00
2024-12-02 23:18:53 +01:00
2025-03-14 00:38:47 +01:00
2025-03-14 00:38:47 +01:00
2025-03-22 10:04:18 +08:00
2024-12-03 08:39:01 +01:00
2025-03-02 20:31:48 +01:00
2025-03-02 20:31:48 +01:00
2025-02-24 23:33:51 +01:00
2025-01-30 20:18:05 +08:00
2024-12-03 08:33:13 +01:00
2024-12-03 08:33:13 +01:00
2024-12-03 08:33:13 +01:00
2024-12-03 08:33:13 +01:00
2024-12-03 08:33:13 +01:00
2025-04-11 13:32:00 +01:00
2025-03-02 20:31:31 +01:00
2025-04-13 18:18:15 +02:00
2024-12-03 08:33:12 +01:00
2024-12-03 08:39:00 +01:00
2025-01-09 00:23:43 +01:00
2025-01-09 00:23:43 +01:00
2024-12-03 08:33:13 +01:00
2024-12-23 20:45:33 +01:00
2024-12-03 08:39:00 +01:00
2024-12-03 08:39:01 +01:00
2024-12-03 08:39:00 +01:00
2025-02-17 22:07:17 +00:00
2025-04-16 13:25:24 +08:00
2025-03-22 23:56:40 +01:00
2025-02-11 09:32:21 +01:00
2025-03-02 20:31:36 +01:00
2024-12-18 13:22:48 +01:00
2025-03-23 10:02:13 +03:00
2025-01-26 22:59:59 +09:00
2024-12-18 22:57:11 +08:00
2025-03-02 20:31:33 +01:00
2025-03-05 14:29:07 +09:00
2025-03-17 20:55:38 +09:00
2024-12-03 08:33:12 +01:00
2025-01-31 16:39:25 +08:00
2025-02-08 14:03:12 +01:00
2025-02-11 14:02:51 +01:00
2025-04-11 12:42:47 +01:00
2025-04-06 17:24:08 +01:00
2025-01-29 22:13:39 +09:00
2025-03-22 21:36:21 +08:00
2025-01-06 12:21:29 +02:00
2025-03-10 17:06:26 +00:00
2025-03-02 20:31:36 +01:00
2024-12-24 00:37:54 +01:00
2025-04-06 15:04:53 +02:00
2024-12-22 15:37:34 +02:00
2024-12-22 15:37:34 +02:00
2024-12-22 15:37:34 +02:00
2024-12-22 15:37:34 +02:00
2024-12-22 15:37:34 +02:00
2024-12-22 15:37:34 +02:00
2024-12-22 15:37:34 +02:00
2024-12-22 15:37:35 +02:00
2024-12-22 15:37:35 +02:00
2024-12-22 15:37:35 +02:00
2024-12-22 15:37:35 +02:00
2024-12-22 15:37:35 +02:00
2024-12-22 15:37:35 +02:00
2024-12-22 15:37:35 +02:00
2025-01-06 12:15:04 +02:00
2025-03-02 20:31:37 +01:00
2024-12-03 08:39:00 +01:00
2025-03-19 11:20:13 +01:00
2025-03-30 10:26:16 +08:00
2024-12-03 08:39:00 +01:00
2024-12-03 08:39:00 +01:00
2024-12-18 09:07:27 +01:00
2024-12-22 15:37:33 +02:00
2024-12-22 15:37:33 +02:00
2024-12-22 15:37:33 +02:00
2024-12-22 15:37:33 +02:00
2025-04-14 10:34:51 +09:00
2025-04-16 11:46:07 +02:00
2025-04-16 11:46:28 +02:00
2024-12-06 19:19:19 +01:00
2025-04-16 11:46:27 +02:00
2024-12-13 21:01:36 +00:00
2025-01-27 14:42:40 +01:00
2025-01-27 14:42:40 +01:00
2025-04-16 11:46:25 +02:00
2025-04-16 11:46:27 +02:00
2025-02-22 23:55:24 +09:00
2025-03-05 14:23:42 +09:00
2025-03-05 14:23:42 +09:00
2025-03-05 14:23:42 +09:00
2025-02-13 14:12:22 +09:00
2025-02-18 15:45:54 -08:00
2025-04-08 13:24:38 +02:00
2025-02-07 14:08:36 +01:00
2025-01-26 22:59:59 +09:00
2025-01-07 08:57:15 +02:00
2025-01-07 08:57:15 +02:00
2025-01-07 08:57:15 +02:00
2025-03-22 23:56:40 +01:00
2025-03-22 23:56:40 +01:00
2025-03-02 20:31:32 +01:00
2024-12-11 18:39:08 +01:00
2025-01-30 00:42:37 -05:00
2024-12-11 17:58:28 +08:00
2025-03-09 01:20:32 +01:00
2024-12-18 14:25:01 -08:00
2024-12-18 14:25:01 -08:00
2024-12-01 17:48:11 +01:00
2025-04-02 20:50:14 +02:00
2025-03-02 20:31:34 +01:00
2025-03-16 14:50:18 +08:00
2025-03-05 14:25:06 +09:00
2025-02-20 10:23:37 +08:00
2025-03-19 11:31:41 +01:00
2024-12-31 10:56:34 +08:00
2024-12-31 10:54:05 +08:00
2024-12-31 10:54:05 +08:00
2024-12-31 10:54:05 +08:00
2024-12-31 10:56:34 +08:00
2024-12-31 10:54:11 +08:00
2024-12-31 10:54:11 +08:00
2024-12-31 10:54:11 +08:00
2024-12-31 10:54:11 +08:00
2024-12-31 10:54:11 +08:00
2024-12-31 10:54:13 +08:00
2024-12-31 10:56:34 +08:00
2024-12-31 10:54:15 +08:00
2024-12-31 10:54:15 +08:00
2024-12-31 10:56:34 +08:00
2024-12-31 10:54:17 +08:00
2024-12-31 10:54:17 +08:00
2024-12-31 10:54:17 +08:00
2024-12-31 10:56:34 +08:00
2024-12-31 10:54:17 +08:00
2025-03-05 16:58:41 +08:00
2025-03-05 16:58:41 +08:00
2025-03-05 16:58:41 +08:00