1
0
forked from tribes/guix
Commit Graph

188195 Commits

Author SHA1 Message Date
Ricardo Wurmus bf25bf22bb gnu: r-convert: Update to 1.88.0.
* gnu/packages/bioconductor.scm (r-convert): Update to 1.88.0.

Change-Id: I7ae2eaf2da6fef566142c77f49edab1a7f2d726b
2026-05-28 12:12:28 +02:00
Ricardo Wurmus 04e49318d0 gnu: r-cigarillo: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-cigarillo): Update to 1.2.0.

Change-Id: I1062bf18a29d3375aaca5423f712255d6f108e0b
2026-05-28 12:12:27 +02:00
Ricardo Wurmus 3b57c4c2b5 gnu: r-chihaya: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-chihaya): Update to 1.12.0.

Change-Id: I56ebb38a4a4a7cac573e88215da831f21a122efb
2026-05-28 12:12:27 +02:00
Ricardo Wurmus ddce837e3e gnu: r-cellid: Update to 1.19.0.
* gnu/packages/bioconductor.scm (r-cellid): Update to 1.19.0.

Change-Id: Ia408222e9489331f53ec496d928e87074343ea54
2026-05-28 12:12:27 +02:00
Ricardo Wurmus 88d68fba02 gnu: r-ccfindr: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-ccfindr): Update to 1.32.0.

Change-Id: Ibf3e87999a8b9544d0f792cf37a4e521eecb8bc6
2026-05-28 12:12:27 +02:00
Ricardo Wurmus cf3620ea4d gnu: r-cardelino: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-cardelino): Update to 1.14.0.

Change-Id: I73b733a3013bc24241ad79d4647c7904796ce6ba
2026-05-28 12:12:27 +02:00
Ricardo Wurmus fc58401762 gnu: r-breakpointr: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-breakpointr): Update to 1.30.0.
[native-inputs]: Add r-biocstyle.

Change-Id: Ibfb391525c6ae0c110195cd7d524b7082afa44cf
2026-05-28 12:12:27 +02:00
Ricardo Wurmus c611d83df6 gnu: r-biocgenerics: Update to 0.58.0.
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.58.0.

Change-Id: I41c378b898f877ed2ebdb287865b292404b9f007
2026-05-28 12:12:27 +02:00
Ricardo Wurmus 77b7707bb1 gnu: r-biocversion: Update to 3.23.1.
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.23.1.

Change-Id: Icf93c7207a9ce9139e03548caec0347dd653b16b
2026-05-28 12:12:27 +02:00
Ricardo Wurmus 2245ec7fe7 gnu: r-biocmake: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-biocmake): Update to 1.4.0.

Change-Id: Ic8c7974cd2720f5f2c7e31c594265b9b7f9b7534
2026-05-28 12:12:26 +02:00
Ricardo Wurmus a5dd8bdc78 gnu: r-banocc: Update to 1.35.0.
* gnu/packages/bioconductor.scm (r-banocc): Update to 1.35.0.

Change-Id: Id3f388ebb061fdc3c71903c770c0d5fd1abe6d5e
2026-05-28 12:12:26 +02:00
Ricardo Wurmus 44ef749bea gnu: r-bandits: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.28.0.

Change-Id: I14a577b40dca247b69ec71a50e92b178999d8eb1
2026-05-28 12:12:26 +02:00
Ricardo Wurmus fdeaa3f33c gnu: r-bambu: Update to 3.14.0.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.14.0.

Change-Id: I933ed11ef36f0bb4245b660f69f787bead4a492b
2026-05-28 12:12:26 +02:00
Ricardo Wurmus 785d0aa787 gnu: r-badregionfinder: Update to 1.39.0.
* gnu/packages/bioconductor.scm (r-badregionfinder): Update to 1.39.0.

Change-Id: Idb738f5ac2b2824862d45e5c00ec6a0ce84f231d
2026-05-28 12:12:26 +02:00
Ricardo Wurmus 4196fd505c gnu: r-bader: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-bader): Update to 1.50.0.

Change-Id: I358927a78dcce727c481f96ea82be783ebe638b0
2026-05-28 12:12:26 +02:00
Ricardo Wurmus 7611fcd7c2 gnu: r-basespacer: Update to 1.55.0.
* gnu/packages/bioconductor.scm (r-basespacer): Update to 1.55.0.

Change-Id: I67d58052f427ec2987e53b366833a3ad11c9f0eb
2026-05-28 12:12:26 +02:00
Ricardo Wurmus 0d7a2bd272 gnu: r-bags: Update to 2.51.0.
* gnu/packages/bioconductor.scm (r-bags): Update to 2.51.0.

Change-Id: Ia129c73b74b6ab3c20127874d32d64d1c1498c46
2026-05-28 12:12:26 +02:00
Ricardo Wurmus cb94e62717 gnu: r-baalchip: Update to 1.37.0.
* gnu/packages/bioconductor.scm (r-baalchip): Update to 1.37.0.

Change-Id: I6e519a66e440c99077bb1f725c2a31abddab71f8
2026-05-28 12:12:25 +02:00
Ricardo Wurmus 3468110c5f gnu: r-awst: Update to 1.19.0.
* gnu/packages/bioconductor.scm (r-awst): Update to 1.19.0.

Change-Id: I8585304e332760a5b8fdb17fe549cf40258f10e1
2026-05-28 12:12:25 +02:00
Ricardo Wurmus b465b1fb81 gnu: r-awfisher: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-awfisher): Update to 1.26.0.

Change-Id: I96bafcfc714bb21e00b51445072597fffadc71b9
2026-05-28 12:12:25 +02:00
Ricardo Wurmus 0a7bcafa51 gnu: r-attract: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-attract): Update to 1.64.0.

Change-Id: I9c3bca1cd85f2439a5c6586b14873a7192aa0ec0
2026-05-28 12:12:25 +02:00
Ricardo Wurmus fddb7d2727 gnu: r-atsnp: Update to 1.27.0.
* gnu/packages/bioconductor.scm (r-atsnp): Update to 1.27.0.

Change-Id: I9301f7376c5995f4098970f59aae821ef645f782
2026-05-28 12:12:25 +02:00
Ricardo Wurmus da41b1d115 gnu: r-atena: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-atena): Update to 1.18.0.

Change-Id: If4ed6374a1ab02f7978a851d893bbd2a2456109c
2026-05-28 12:12:25 +02:00
Ricardo Wurmus e445919a6c gnu: r-assorthead: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-assorthead): Update to 1.6.0.

Change-Id: I22eea70d50a53e450cc1e612b717fd3c4bfe114c
2026-05-28 12:12:25 +02:00
Ricardo Wurmus 1b7b6678b8 gnu: r-asset: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-asset): Update to 2.30.0.

Change-Id: I04158ec5902d411d6626b7399dfd38cac9cd5b43
2026-05-28 12:12:25 +02:00
Ricardo Wurmus 7f52a20ec7 gnu: r-assessorf: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-assessorf): Update to 1.30.0.

Change-Id: I415715cd6c7a549dc008ffd0fa8c5b2cc1859c8e
2026-05-28 12:12:24 +02:00
Ricardo Wurmus 43cfb5beb6 gnu: r-aspli: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-aspli): Update to 2.22.0.

Change-Id: I020c5308e90f7e799845e33bbd6a245453604557
2026-05-28 12:12:24 +02:00
Ricardo Wurmus c42616ff06 gnu: r-asics: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-asics): Update to 2.28.0.

Change-Id: If8944f947b884a424287c74f3a68fcc75d160a09
2026-05-28 12:12:24 +02:00
Ricardo Wurmus 7a400155a9 gnu: r-asgsca: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-asgsca): Update to 1.46.0.

Change-Id: Ic022a519d521bcd8c93feef9671a68800c2aa4a3
2026-05-28 12:12:24 +02:00
Ricardo Wurmus 57cba833d4 gnu: r-aseb: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-aseb): Update to 1.56.0.

Change-Id: Ia60496fb7ff0a6a88401e604777179a3b724b901
2026-05-28 12:12:24 +02:00
Ricardo Wurmus 6dd7ddeb0b gnu: r-asafe: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.38.0.

Change-Id: I5bea5eb7b878d4583f6a35a5e375308ace4b3550
2026-05-28 12:12:24 +02:00
Ricardo Wurmus 6b4e414a11 gnu: r-arrayquality: Update to 1.90.0.
* gnu/packages/bioconductor.scm (r-arrayquality): Update to 1.90.0.

Change-Id: I515d07fe5fb1f2317c32e5507dabba2505d7b305
2026-05-28 12:12:24 +02:00
Ricardo Wurmus 51bded5dec gnu: r-arraymvout: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-arraymvout): Update to 1.70.0.

Change-Id: I39a3b55f2dc4c3724532a199b509cecd8e820945
2026-05-28 12:12:24 +02:00
Ricardo Wurmus 3cb6b06cec gnu: r-arrayqualitymetrics: Update to 3.68.0.
* gnu/packages/bioconductor.scm (r-arrayqualitymetrics): Update to 3.68.0.
[propagated-inputs]: Add r-jsonlite.
[native-inputs]: Remove r-biocstyle.

Change-Id: I3d588dc78c091eb12cc64ed67e92d5f38141889b
2026-05-28 12:12:23 +02:00
Ricardo Wurmus e885e0459c gnu: r-arrayexpress: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.72.0.

Change-Id: Ie9482b5ad035df6f05c925b41fc449c6ad20fd13
2026-05-28 12:12:23 +02:00
Ricardo Wurmus e30df20dc9 gnu: r-antiprofiles: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-antiprofiles): Update to 1.52.0.

Change-Id: Ic338000054a7fa2471d654c7f3e20faee2fbcf36
2026-05-28 12:12:23 +02:00
Ricardo Wurmus f1bffe6c48 gnu: r-annmap: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-annmap): Update to 1.54.0.

Change-Id: Ie4f84f6b8c617e962813a371d7bb878cc84f5f96
2026-05-28 12:12:23 +02:00
Ricardo Wurmus 040abd305f gnu: r-anf: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-anf): Update to 1.34.0.

Change-Id: I7160b1151332b9e230b03417aa01ce0d397812c9
2026-05-28 12:12:23 +02:00
Ricardo Wurmus ee4314caa3 gnu: r-altcdfenvs: Update to 2.74.0.
* gnu/packages/bioconductor.scm (r-altcdfenvs): Update to 2.74.0.

Change-Id: Ie9a2796f802a6f0a3390d6842b922e7a99fb6bf5
2026-05-28 12:12:23 +02:00
Ricardo Wurmus 60c4dfe38d gnu: r-alpsnmr: Update to 4.14.0.
* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.14.0.

Change-Id: I0265e448562f2c962f2e90bf2907d79b1c64148e
2026-05-28 12:12:23 +02:00
Ricardo Wurmus e6d7b46888 gnu: r-alphabeta: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.26.0.

Change-Id: I316ae020dc0ab0458967bdc2bf4f6055aa62f026
2026-05-28 12:12:23 +02:00
Ricardo Wurmus b218b9faeb gnu: r-alevinqc: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.28.0.

Change-Id: Ic962718fe5b2d908872fb4e6c10ba29052ffd950
2026-05-28 12:12:22 +02:00
Ricardo Wurmus 4784a57f2a gnu: r-aldex2: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-aldex2): Update to 1.44.0.

Change-Id: I3d9e53a54564511966b437603c681091c11849e6
2026-05-28 12:12:22 +02:00
Ricardo Wurmus 569f6719ee gnu: r-anvilgcp: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-anvilgcp): Update to 1.6.0.

Change-Id: I3559a37fa9a49ede93dcff8c5d51b85cd4078412
2026-05-28 12:12:22 +02:00
Ricardo Wurmus 780d8ff2c2 gnu: r-anvilbase: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-anvilbase): Update to 1.6.0.

Change-Id: I3a821ea67b4d74f698b86182db90e37164a14a10
2026-05-28 12:12:22 +02:00
Ricardo Wurmus 1ea6a295a0 gnu: r-anvil: Update to 1.23.12.
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.23.12.
[propagated-inputs]: Add r-digest and r-keyring.

Change-Id: I8e2b8dc5014ccf50c28ceb7d45eb5f0f87f49f7c
2026-05-28 12:12:22 +02:00
Ricardo Wurmus 3b582d34e4 gnu: r-annotationhubdata: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-annotationhubdata): Update to 1.42.0.

Change-Id: I801bcf2fee5e6aac8773e33387d0a32c175f7f7f
2026-05-28 12:12:22 +02:00
Ricardo Wurmus dccc67ff7a gnu: r-anndatar: Update to 1.1.3.
* gnu/packages/bioconductor.scm (r-anndatar): Update to 1.1.3.
[native-inputs]: Add r-rarr.

Change-Id: If21f49639bbd388aee0abfdb52e18a1f01a92635
2026-05-28 12:12:22 +02:00
Ricardo Wurmus 3f9cd984ef gnu: r-animalcules: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-animalcules): Update to 1.28.0.

Change-Id: Id472a096557d1c3e243bcb689e5af332cf90ddb5
2026-05-28 12:12:22 +02:00
Ricardo Wurmus aca5930213 gnu: r-ancombc: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.14.0.
[propagated-inputs]: Remove r-cvxr; add r-quadprog.

Change-Id: Ibf4ac30fe71a7555238749871b749228076e3b8e
2026-05-28 12:12:21 +02:00