gnu: python-aiapy: Update to 0.12.0.

* gnu/packages/astronomy.scm (python-aiapy): Update to 0.12.0.
[source]: Switch to git-fetch.
[arguments] <test-flags>: Run all tests.
[phases]{set-home}: Adjust name to {set-HOME}, remove redundant comment.
{include-package-data}: New phase.

Change-Id: Id5368484909bddec77845f92758eda3a317bd19a

CODEOWNERS

@@ -68,6 +68,7 @@ guix/discovery\.scm                                @guix/core
 guix/docker\.scm                                   @guix/core
 guix/download\.scm                                 @guix/core
 guix/elf\.scm                                      @guix/core
+guix/fossil-download\.scm                          @guix/core
 guix/ftp-client\.scm                               @guix/core
 guix/gexp\.scm                                     @guix/core
 guix/git-authenticate\.scm                         @guix/core
@@ -484,6 +485,7 @@ gnu/services/version-control\.scm                  @guix/vcs
 gnu/tests/version-control\.scm                     @guix/vcs
 guix/build/bzr\.scm                                @guix/vcs
 guix/build/cvs\.scm                                @guix/vcs
+guix/build/fossil\.scm                             @guix/vcs
 guix/build/git\.scm                                @guix/vcs
 guix/build/hg\.scm                                 @guix/vcs
 guix/build/svn\.scm                                @guix/vcs

Makefile.am

@@ -104,6 +104,7 @@ MODULES =					\
   guix/discovery.scm				\
   guix/android-repo-download.scm		\
   guix/bzr-download.scm            		\
+  guix/fossil-download.scm			\
   guix/git-download.scm				\
   guix/hg-download.scm				\
   guix/hash.scm					\
@@ -236,6 +237,7 @@ MODULES =					\
   guix/build/asdf-build-system.scm		\
   guix/build/bzr.scm				\
   guix/build/copy-build-system.scm		\
+  guix/build/fossil.scm				\
   guix/build/git.scm				\
   guix/build/hg.scm				\
   guix/build/glib-or-gtk-build-system.scm	\

NEWS

@@ -20,6 +20,9 @@ Please send Guix bug reports to bug-guix@gnu.org.
 *** New service for Fossil SCM
 *** TeX Live updated to 2026.1
 
+** Programming interfaces
+*** New (guix fossil-download) module, for fetching Fossil repositories
+
 * Changes in 1.5.0 (since 1.4.0)
 ** Package management
 *** New ‘rpm’ format for the ‘guix pack’ command

doc/guix.texi

@@ -8737,6 +8737,52 @@ The example below denotes a version of gnu-standards to fetch:
 
 @end deftp
 
+For Fossil repositories, the module @code{(guix fossil-download)} defines
+the @code{fossil-fetch} origin method and @code{fossil-reference} data type
+for support of the Fossil @abbr{SCM, software configuration management} system.
+
+@deffn {Procedure} fossil-fetch ref hash-algo hash [name]
+Return a fixed-output derivation that fetches @var{ref}, a
+@code{<fossil-reference>} object.  The output is expected to have recursive
+hash @var{hash} of type @var{hash-algo} (a symbol).  Use @var{name} as
+the file name, or a generic name if @code{#f}.
+@end deffn
+
+@deftp {Data Type} fossil-reference
+This data type represents a Fossil reference
+for @code{fossil-fetch} to retrieve.
+
+@table @asis
+@item @code{uri} (type: string)
+The URI of a Fossil repository to clone, in one of the following forms,
+in which @code{[...]} denotes optional elements:
+
+@table @code
+@item http[s]://[userid[:password]@@]host[:port][/path]
+A HTTP/HTTPS URL.
+@item [file://]path/to/repo.fossil
+A file URI, where the path must have an extra leading @code{/}
+to use an absolute path (without the URI scheme, the repository
+is opened directly without cloning).
+@end table
+
+@item @code{check-in} (type: string)
+A @url{https://fossil-scm.org/home/doc/trunk/www/checkin_names.wiki,
+name of the check-in} to fetch, e.g.@: its canonical hexadecimal identifier,
+associated tag and/or timestamp.
+@end table
+
+The example below denotes the @code{version-3.51.1} tag
+of the SQLite repository:
+
+@lisp
+(fossil-reference
+ (uri "https://sqlite.org/src")
+ (check-in "version-3.51.1"))
+@end lisp
+
+@end deftp
+
 @node Defining Package Variants
 @section Defining Package Variants
 

etc/teams.scm

@@ -565,6 +565,7 @@ challenges"))
               "guix/docker.scm"
               "guix/download.scm"
               "guix/elf.scm"
+              "guix/fossil-download.scm"
               "guix/ftp-client.scm"
               "guix/gexp.scm"
               "guix/git-authenticate.scm"
@@ -1214,6 +1215,7 @@ the \"texlive\" importer."
                       "gnu/tests/version-control.scm"
                       "guix/build/bzr.scm"
                       "guix/build/cvs.scm"
+                      "guix/build/fossil.scm"
                       "guix/build/git.scm"
                       "guix/build/hg.scm"
                       "guix/build/svn.scm")))

gnu/local.mk

@@ -1698,6 +1698,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/libcss-check-format.patch		\
   %D%/packages/patches/libeb-gcc-14.patch			\
   %D%/packages/patches/libextractor-tidy-support.patch		\
+  %D%/packages/patches/libfossil-skip-amalgamation.patch	\
   %D%/packages/patches/libftdi-fix-paths-when-FTDIPP-set.patch	\
   %D%/packages/patches/libgeotiff-fix-tests-with-proj-9.1.1.patch	\
   %D%/packages/patches/libgeotiff-fix-tests-with-proj-9.3.0.patch	\

gnu/packages/astronomy.scm

@@ -284,7 +284,7 @@ a wide set of telescopes.")
 (define-public astroterm
   (package
     (name "astroterm")
-    (version "1.0.10")
+    (version "1.2.0")
     (source
      (origin
        (method git-fetch)
@@ -293,7 +293,7 @@ a wide set of telescopes.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1k946b5qv6jqiap3pi4gv2w46lq0j9q19lfrzkzlypi8h2a9plng"))))
+        (base32 "1p6rxv18gp989fmydbp75mrqxffjlqwp6xkdk18jj322hri0lidv"))))
     (build-system meson-build-system)
     (arguments
      (list
@@ -770,7 +770,7 @@ analysis.")
 (define-public cpl
   (package
     (name "cpl")
-    (version "7.3.2")
+    (version "7.3.4")
     (source
      (origin
        (method url-fetch)
@@ -778,7 +778,7 @@ analysis.")
              "https://ftp.eso.org/pub/dfs/pipelines/libraries/cpl/cpl-"
              version ".tar.gz"))
        (sha256
-        (base32 "083ppsa6ifc52m0s4ww4l9cajnh2f0y3s5bxaq31drihhrd2c355"))))
+        (base32 "090xp9scg34z60iiklf8w7gmbjbja3sdv7xk97pn8llklvks8xgi"))))
     (build-system gnu-build-system)
     (arguments
      ;; pycpl expects to find a lib/esopipes-plugins directory.  This is
@@ -1215,7 +1215,7 @@ programs for the manipulation and analysis of astronomical data.")
 (define-public gpredict
   (package
     (name "gpredict")
-    (version "2.4")
+    (version "2.5.1")
     (source
      (origin
        (method git-fetch)
@@ -1224,7 +1224,7 @@ programs for the manipulation and analysis of astronomical data.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0dfwb6h7bkhx782pj78xw4c1h1r6kd3md7xjz1jvxapsx0iypclw"))))
+        (base32 "1bcy50g1hkdwdadr5lb2fs3ry261qcp10kf3cc0kif9y8im91zwl"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -1409,7 +1409,7 @@ floating-point (no compression, LZW- or ZIP-compressed), FITS 8-bit, 16-bit,
 (define-public indi
   (package
     (name "indi")
-    (version "2.1.9")
+    (version "2.2.0")
     (source
      (origin
        (method git-fetch)
@@ -1418,7 +1418,7 @@ floating-point (no compression, LZW- or ZIP-compressed), FITS 8-bit, 16-bit,
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0nlvcp4z2wb0yha141x25xgvcl5rsqm7jq47c49rxq0bb3arjyig"))))
+        (base32 "0rknhrv7hhwmgvsi9lgrajl6hipsxk7d7nqazk7i8cczsrxgwdjx"))))
     (build-system cmake-build-system)
     (arguments
      (list
@@ -2031,29 +2031,32 @@ model-fitting photometry or morphological analyses.")
 (define-public python-aiapy
   (package
     (name "python-aiapy")
-    (version "0.11.0")
+    (version "0.12.0")
     (source
      (origin
-       (method url-fetch)
-       (uri (pypi-uri "aiapy" version))
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/LM-SAL/aiapy")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "11hjqk8840y7dwny0r8apqf0a0kb0lyn7kr1syzqhp87zjslna5q"))))
+        (base32 "0b5zvqnjxpdx8830s2f5pziyjqh8isy4y4b7j0xg5rh4vm7zqfhm"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; tests: 47 passed, 76 skipped
-      #:test-flags
-      ;; Remove data is required: ValueError: Did not find any files
-      ;; at https:/github.com/sunpy/data/blob/main/aiapy/aia_lev1_\
-      ;; 193a_2013_03_15t12_01_06_84z_image_lev1.fits?raw=true
-      #~(list (string-append "--deselect=aiapy/calibrate/tests/test_meta.py"
-                             "::test_fix_pointing_missing_value"))
+      ;; tests: 47 passed, 82 skipped, 133 warnings
       #:phases
       #~(modify-phases %standard-phases
-          (add-before 'check 'set-home
+          (add-after 'unpack 'include-package-data
+            (lambda _
+              ;; See: <https://github.com/LM-SAL/aiapy/pull/396>.
+              (substitute* "pyproject.toml"
+                (("include-package-data = true.*" all)
+                 (string-append all
+                                "\n[tool.setuptools.package-data]
+aiapy = ['*.rst']")))))
+          (add-before 'check 'set-HOME
             (lambda _
-              ;; E PermissionError: [Errno 13] Permission denied:
-              ;; '/homeless-shelter'
               (setenv "HOME" "/tmp"))))))
     (native-inputs
      (list nss-certs-for-test
@@ -3769,6 +3772,45 @@ processing of CCD images built on a framework to provide error propagation and
 bad pixel tracking throughout the reduction process.")
     (license license:bsd-3)))
 
+(define-public python-cdasws
+  (package
+    (name "python-cdasws")
+    (version "1.8.15")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "cdasws" version))
+       (sha256
+        (base32 "04jfzbdpyrfzdz6x2xxcgnpv5bih58bnw0mvscbzklwhq9wsd0gk"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list #:tests? #f))   ;require network, and missing "context" module
+    (native-inputs
+     (list python-setuptools))
+    (propagated-inputs
+     (list python-dateutil
+           python-requests
+           python-urllib3))
+    (home-page "https://cdaweb.gsfc.nasa.gov/WebServices/REST/")
+    (synopsis
+     "NASA's Coordinated Data Analysis System Web Service Client Library")
+    (description
+     "This package provides NASA's Coordinated Data Analysis System Web
+Service Client Library.
+
+The Coordinated Data Analysis System (CDAS) supports simultaneous
+multi-mission, multi-instrument selection and comparison of science data among
+a wide range of current space missions.  While CDAWeb provides access to this
+data through an HTML-based user interface, these Web services provides a (Web)
+application programmming interface (API) to CDAS.  If you are not a software
+developer and simply want to use the existing web (HTML) interface to CDAS,
+then return to the main CDAWeb page.  If you are developing software that
+requires science data from any of the CDAWeb datasets, then the CDAS Web
+services will provide access to the data without having to explicitly
+find,download, and read the data files.")
+    ;; NASA open source agreement version 1.3, BSD like.
+    (license license:bsd-3)))
+
 (define-public python-cdflib
   (package
     (name "python-cdflib")
@@ -5032,6 +5074,42 @@ CFITSIO library.  Among other things, it can
 @end itemize")
     (license license:gpl2+)))
 
+(define-public python-flatstar
+  (package
+    (name "python-flatstar")
+    (version "0.2.1-alpha")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/ladsantos/flatstar")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0r6w8sz7z9ri9plqn98dz93c9rb33ky544y1wzwifh1m8y3m67si"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      ;; assert np.float32(2.861023e-06) < 1e-06
+      #~(list "--deselect=tests/test_draw.py::test_supersampling"
+              ;; assert np.float32(1.9073486e-06) < 1e-06
+              "--deselect=tests/test_draw.py::test_upscaling")))
+    (native-inputs
+     (list python-pytest
+           python-setuptools))
+    (propagated-inputs
+     (list python-numpy
+           python-pillow))
+    (home-page "https://github.com/ladsantos/flatstar")
+    (synopsis "Make 2d intensity maps of limb-darkened stars")
+    (description
+     "@code{flatstar} is a pure-Python tool for drawing stellar disks with
+scientifically-rigorous limb darkening.  Each pixel has an accurate fractional
+intensity in relation to the total stellar intensity of @code{1.0}.  It is
+ideal for ray-tracing simulations of stars and planetary transits.")
+    (license license:expat)))
+
 (define-public python-galsim
   (package
     (name "python-galsim")
@@ -5703,6 +5781,41 @@ universes of galaxies starting from a catalog of dark matter halos obtained
 from a cosmological simulation.")
     (license license:bsd-3)))
 
+(define-public python-hapiclient
+  (package
+    (name "python-hapiclient")
+    (version "0.2.5")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/hapi-server/client-python")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0mjb12cphcqq3vj3czyx77yrd3jl15gz6a2a2q5fcz21i63fpig6"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      ;; Tests require access to:
+      ;; http://hapi-server.org/servers/TestData/xhapi
+      ;; http://hapi-server.org/servers/TestData2.0/hapi
+      #:tests? #f))
+    (native-inputs
+     (list python-setuptools))
+    (propagated-inputs
+     (list python-isodate
+           python-joblib
+           python-numpy
+           python-pandas
+           python-urllib3))
+    (home-page "https://github.com/hapi-server/client-python")
+    (synopsis "Interface to Heliophysics data server API")
+    (description
+     "This package provides an interface to @acronym{Heliophysics Application
+Programmer’s Interface, HAPI} data server API.")
+    (license license:bsd-3)))
+
 (define-public python-hasasia
   (package
     (name "python-hasasia")
@@ -6477,6 +6590,47 @@ quantification of galaxies, quasar-host galaxy decomposition and much more.")
     (native-inputs
      (list python-setuptools))))
 
+(define-public python-lephare
+  (package
+    (name "python-lephare")
+    (version "0.3.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "lephare" version))
+       (sha256
+        (base32 "1nkd807kl2xg25iwb5wj380pxlvrd9abdaznaw5if3qjmjkjx86s"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      ;; Network access is required to reach <http://svo2.cab.inta-csic.es>.
+      #~(list "--deselect=tests/lephare/test_data_retrieval.py::test_get_auxiliary_data"
+              "--deselect=tests/lephare/test_filter.py::test_filtersvc")
+      #:phases
+      '(modify-phases %standard-phases
+        (add-before 'sanity-check 'set-HOME
+          (lambda _ (setenv "HOME" "/tmp"))))))
+    (native-inputs
+     (list cmake-minimal
+           python-pytest
+           python-setuptools))
+    (propagated-inputs
+     (list python-astropy
+           python-matplotlib
+           python-numpy
+           python-platformdirs
+           python-pooch
+           python-requests
+           python-scipy
+           python-wurlitzer))
+    (home-page "https://lephare.readthedocs.io/en/latest/")
+    (synopsis "Photometric redshift estimator")
+    (description
+     "LePHARE is a code for estimating galaxy redshifts and physical parameters
+using template fitting.")
+    (license license:expat)))
+
 (define-public python-libstempo
   (package
     (name "python-libstempo")
@@ -6692,6 +6846,37 @@ restrictive than the API used by astropy, so the appropriate module to use
 will depend on your needs.")
     (license license:expat)))
 
+(define-public python-madrigalweb
+  (package
+    (name "python-madrigalweb")
+    (version "3.3.7")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "madrigalweb" version))
+       (sha256
+        (base32 "0p55igi0xrckjbihcbjn14033hzliq6qjmacrxigrvjw3m016b75"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list #:tests? #f))    ;network access is required
+    (native-inputs
+     (list python-setuptools))
+    (home-page "https://cedar.openmadrigal.org")
+    (synopsis "Python Madrigal Remote API")
+    (description
+     "@code{madrigalWeb} is a pure python module to access data from any
+@url{https://cedar.openmadrigal.org/, Madrigal}
+database.
+
+Madrigal is an upper atmospheric science database used by groups throughout
+the world.  Madrigal is a robust, World Wide Web based system capable of
+managing and serving archival and real-time data, in a variety of formats,
+from a wide range of upper atmospheric science instruments.  Data at each
+Madrigal site is locally controlled and can be updated at any time, but shared
+metadata between Madrigal sites allow searching of all Madrigal sites at once
+from any Madrigal site.")
+    (license license:expat)))
+
 (define-public python-mapsims
   (package
     (name "python-mapsims")
@@ -6970,6 +7155,44 @@ Astronomy.")
      "Orbital is a high level orbital mechanics package for Python.")
     (license license:expat)))
 
+(define-public python-p-winds
+  (package
+    (name "python-p-winds")
+    (version "1.4.7")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/ladsantos/p-winds")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0z94nvx47v50c7nq20kny49cr2w2xszvijy9bfxp2dbgq49ip244"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list #:tests? #f))    ;network access is required to fetch test data
+    (native-inputs
+     (list python-setuptools))
+    (propagated-inputs
+     (list python-astropy
+           python-flatstar
+           python-numpy
+           python-scipy))
+    (home-page "https://github.com/ladsantos/p-winds")
+    (synopsis "Parker wind models for planetary atmospheres")
+    (description
+     "Python implementation of Parker wind models for planetary atmospheres.
+@code{p-winds} produces simplified, 1-D models of the upper atmosphere of a
+planet, and perform radiative transfer to calculate observable spectral
+signatures.
+
+The scalable implementation of 1D models allows for atmospheric retrievals to
+calculate atmospheric escape rates and temperatures.  In addition, the modular
+implementation allows for a smooth plugging-in of more complex descriptions to
+forward model their corresponding spectral signatures (e.g., self-consistent
+or 3D models).")
+    (license license:expat)))
+
 (define-public python-petrofit
   (package
     (name "python-petrofit")
@@ -8013,6 +8236,114 @@ data.  Pysat's plug-in design allows analysis support for any data, including
 user provided data sets.")
     (license license:bsd-3)))
 
+(define-public python-pysatmadrigal
+  (package
+    (name "python-pysatmadrigal")
+    (version "0.2.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/pysat/pysatMadrigal")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1x1sbx9xv9h1p85cryn2b9kbnxy0kb9xzfgxcvfrpfxa5ji4qwcp"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      ;; ValueError: unable to open url http://cedar.openmadrigal.org
+      #~(list "-k" "not test_download and not test_remote_file_list")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'sanity-check 'set-HOME
+            (lambda _
+              (setenv "HOME" "/tmp")))
+          (add-before 'check 'pre-check
+            (lambda _
+              (mkdir "pysatData")
+              (invoke "python" "-c"
+                      "import pysat; pysat.params['data_dirs'] = 'pysatData'"))))))
+    (native-inputs
+     (list python-pytest
+           python-pytest-cov    ;remove after pyton-team is merged
+           python-setuptools))
+    (propagated-inputs
+     (list python-h5py
+           python-madrigalweb
+           python-numpy
+           python-packaging
+           python-pandas
+           python-pysat
+           python-xarray))
+    (home-page "https://github.com/pysat/pysatMadrigal")
+    (synopsis "Madrigal instrument support for the pysat ecosystem")
+    (description
+     "This package provides functions to import data from the
+@url{https://cedar.openmadrigal.org/, Madrigal} database (upper atmospheric
+science database) into pysat.")
+    (license license:bsd-3)))
+
+(define-public python-pysatspaceweather
+  (package
+    (name "python-pysatspaceweather")
+    (version "0.2.2")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/pysat/pysatSpaceWeather")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0gd6vzy2ikgkrff94qg52pysf1vp7h1p12p8in9j6f6n3cs1b0z2"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      ;; tests: 352 passed, 561 skipped, 61 deselected, 2510 warnings
+      #:test-flags
+      #~(list "-m" "not remote_data"
+              ;; Network access is required.
+              "-k" (string-join
+                    (list "not test_download"
+                          "test_historic_ace_no_data"
+                          "test_historic_download_past_limit"
+                          "test_missing_kp_file"
+                          "test_missing_prelim_file"
+                          "test_realtime_ace_bad_day"
+                          ;; KeyError: 'f107'
+                          "test_45day_forecast_data_length")
+                    " and not "))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'sanity-check 'set-HOME
+            (lambda _
+              (setenv "HOME" "/tmp")))
+          (add-before 'check 'pre-check
+            (lambda _
+              (mkdir "pysatData")
+              (invoke "python" "-c"
+                      "import pysat; pysat.params['data_dirs'] = 'pysatData'"))))))
+    (native-inputs
+     (list python-pytest
+           python-setuptools))
+    (propagated-inputs
+     (list python-netcdf4
+           python-numpy
+           python-packaging
+           python-pandas
+           python-pysat
+           python-requests
+           python-xarray))
+    (home-page "https://github.com/pysat/pysatSpaceWeather")
+    (synopsis "Pysat support for Space Weather Indices")
+    (description
+     "This package provides pysatSpaceWeather - a Python module, which
+contains routines to load common historic, real-time, and forecasted space
+weather indices as pysat.Instrument objects.")
+    (license license:bsd-3)))
+
 (define-public python-pysiaf
   (package
     (name "python-pysiaf")
@@ -8188,6 +8519,59 @@ experiments.  It is a large refactor of
 memory usage, improving performance and run in parallel with MPI.")
     (license license:bsd-3)))
 
+(define-public python-pyspedas
+  (package
+    (name "python-pyspedas")
+    (version "2.1.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/spedas/pyspedas")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "12fdqf45rxwcsy72vbfwrzmd03zlcan62bawq966rcmqs1riwqwn"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      ;; XXX: Netowrk access is required and set up of geopack.
+      #:tests? #f
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'sanity-check 'set-HOME
+            (lambda _
+              (setenv "HOME" "/tmp"))))))
+    (native-inputs
+     (list python-pytest
+           python-setuptools))
+    (propagated-inputs
+     (list python-aioboto3
+           python-astropy
+           python-cdasws
+           python-cdflib
+           python-fsspec
+           python-geopack
+           python-hapiclient
+           python-matplotlib
+           python-netcdf4
+           python-numpy
+           python-pandas
+           python-pywavelets
+           python-requests
+           python-s3fs
+           python-scipy
+           python-setuptools
+           python-spacepy
+           python-xarray))
+    (home-page "https://spedas.org")
+    (synopsis "Python Space Physics Environment Data Analysis Software")
+    (description
+     "The Python-based Space Physics Environment Data Analysis Software
+(PySPEDAS) framework supports multi-mission, multi-instrument retrieval,
+analysis, and visualization of heliophysics time series data.")
+    (license license:expat)))
+
 (define-public python-pysynphot
   ;; XXX: 2.0.0 was released in 2021 there are a lot of changes since that
   ;; time and it failed to build with python-astropy 6.0.0, use the latest
@@ -9402,6 +9786,67 @@ Computing Cluster, HPCC}
 @end itemize")
     (license license:bsd-3)))
 
+(define-public python-spacepy
+  (package
+    (name "python-spacepy")
+    (version "0.7.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/spacepy/spacepy")
+              (commit (string-append "release-" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1i9657j4qll3f8z20n9md93yh35n0vjj32k522bdqxq5pda8dng0"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      ;; tests:
+      #:test-flags
+      #~(list "--ignore=developer/"
+              ;; Tests depend on https://cdf.gsfc.nasa.gov/.
+              "--ignore=tests/test_all.py"
+              "--ignore=tests/test_coordinates.py"
+              "--ignore=tests/test_datamodel.py"
+              "--ignore=tests/test_irbempy.py"
+              "--ignore=tests/test_pycdf.py"
+              "--ignore=tests/test_pycdf_istp.py"
+              "--ignore=tests/test_time.py"
+              ;; AssertionError: Lists differ: ['[sp[38 chars]cePy UNRELEASED
+              ;; default test entry: value\n', [38 chars]]\n'] != ['[sp[38
+              ;; chars]cePy 0.7.0 default test entry: value\n', '#tes[33
+              ;; chars]]\n']
+              (string-append "--deselect=tests/test_base.py::"
+                             "SpacepyConfigTests::"
+                             "testWriteDefaultsMultipleSections"))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'sanity-check 'set-HOME
+            (lambda _
+              (setenv "HOME" "/tmp")))
+          (add-before 'check 'remove-local-source
+            (lambda _
+              (delete-file-recursively "spacepy"))))))
+    (native-inputs
+     (list gfortran
+           python-pytest
+           python-setuptools))
+    (propagated-inputs
+     (list python-astropy
+           python-h5py
+           python-matplotlib
+           python-numpy
+           python-dateutil
+           python-scipy))
+    (home-page "https://github.com/spacepy/spacepy")
+    (synopsis "Tools for Space Science Applications")
+    (description
+     "SpacePy is a package for Python, targeted at the space sciences, that
+aims to make basic data analysis, modeling and visualization easier.  It
+builds on the capabilities of NumPy and MatPlotLib packages.")
+    (license license:psfl)))
+
 (define-public python-spacetrack
   (package
     (name "python-spacetrack")
@@ -11675,7 +12120,7 @@ deconvolution).  Such post-processing is not performed by Stackistry.")
 (define-public stellarium
   (package
     (name "stellarium")
-    (version "25.4")
+    (version "26.1")
     (source
      (origin
        (method git-fetch)
@@ -11684,16 +12129,12 @@ deconvolution).  Such post-processing is not performed by Stackistry.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "085ip706z3jsjgyp114h9x8sl7g947mrfrhgckrk86fmajwia3hc"))))
+        (base32 "05c36v2cyvxdvh4wyapdgc642khnldnbpzad76ql738894ga5djk"))))
     (build-system qt-build-system)
-    ;; TODO: Complete documentation build and split into dedicated outputs.
     (arguments
      (list
-      ;; FIXME: Tests keep failing on 100% when preparing test-suit for INDI.
-      #:tests? #f
       #:configure-flags
-      #~(list "-DENABLE_GPS=1"
-              "-DENABLE_TESTING=0"
+      #~(list "-DENABLE_TESTING=ON"
               (string-append "-DCMAKE_CXX_FLAGS=-isystem "
                              #$(this-package-input "qtpositioning") "/include/qt6"
                              " -isystem "
@@ -11720,6 +12161,7 @@ deconvolution).  Such post-processing is not performed by Stackistry.")
            qtmultimedia
            qtpositioning
            qtserialport
+           qtsvg
            qttranslations
            qtwayland
            qtwebengine
@@ -11734,12 +12176,11 @@ deconvolution).  Such post-processing is not performed by Stackistry.")
            python-wrapper
            qttools))
     (home-page "https://stellarium.org/")
-    (synopsis "3D sky viewer")
+    (synopsis "Planetarium and 3D sky viewer")
     (description
-     "Stellarium is a planetarium.  It shows a realistic sky in
-3D, just like what you see with the naked eye, binoculars, or a telescope.  It
-can be used to control telescopes over a serial port for tracking celestial
-objects.")
+     "Stellarium shows a realistic sky in 3D, just like what you see with the
+naked eye, binoculars, or a telescope.  It can be used to control telescopes
+over a serial port for tracking celestial objects.")
     (license license:gpl2+)))
 
 (define-public stiff
@@ -12047,7 +12488,7 @@ See related paper
 (define-public tenmon
   (package
     (name "tenmon")
-    (version "20260217")
+    (version "20260412")
     (source
      (origin
        (method git-fetch)
@@ -12056,7 +12497,7 @@ See related paper
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "07hiqr6jxmbw2dasbmyvcjmfxw4hjsn7xp269irjgfijsf8ga68n"))))
+        (base32 "0ba7hnkskmr2rydy9rvf3c5cs401bv80qhs32sw5r43kdlpvlaxx"))))
     (build-system qt-build-system)
     (arguments
      (list
@@ -12266,7 +12707,7 @@ traveling to a star 100 light years away looks like.")
 (define-public wcslib
   (package
     (name "wcslib")
-    (version "8.5")
+    (version "8.6")
     (source
      (origin
        (method url-fetch)
@@ -12274,7 +12715,7 @@ traveling to a star 100 light years away looks like.")
                            "wcslib-releases/"
                            "wcslib-" version ".tar.bz2"))
        (sha256
-        (base32 "1kpacbh6zrci44qab0jllkn3a9z3b465w17qcfivvfpxzdw1pzgi"))
+        (base32 "0nndcz82qvfx3hhhw0bylyrydnc23a8bqhp71w4yz6d10lv44c70"))
        (snippet
         #~(begin (use-modules (guix build utils))
                  (delete-file-recursively "C/flexed")))))

gnu/packages/emacs-xyz.scm

@@ -784,7 +784,7 @@ reading the extensive documentation about BookmarkPlus on the Emacs Wiki.")
   (package
     (name "emacs-bqn-mode")
     ;; Upstream releases are tagged by date.
-    (version "2025-07-06")
+    (version "2026-02-08")
     (source
      (origin
        (method git-fetch)
@@ -793,7 +793,7 @@ reading the extensive documentation about BookmarkPlus on the Emacs Wiki.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1b25k66nn4qa4ryhm8mzc53qvsvhgjzdngisw28cpdh109627iz3"))))
+        (base32 "1m9l4if3a9i6r76v370gh6azgj2lwqcnpavfv2bkvm9ad56f3pa8"))))
     (build-system emacs-build-system)
     (arguments
      (list #:tests? #f)) ;No tests found in source.
@@ -24580,6 +24580,13 @@ Meow’s motions.")
       #:tests? #f                       ; no test suite
       #:phases
       #~(modify-phases %standard-phases
+          (add-before 'patch-el-files 'patch-xauth-path
+            ;; Uses xauth directly at runtime to authenticate with the X server.
+            (lambda* (#:key inputs #:allow-other-keys)
+              (substitute* "xcb.el"
+                (("xauth list")
+                 (string-append (search-input-file inputs "/bin/xauth")
+                                " list")))))
           (add-after 'expand-load-path 'regenerate-el-files
             (lambda* (#:key inputs native-inputs #:allow-other-keys)
               (substitute* "xelb-gen"
@@ -24587,6 +24594,7 @@ Meow’s motions.")
               (invoke "make"
                       (format #f "PROTO_PATH=~a/share/xcb"
                               #$(this-package-native-input "xcb-proto"))))))))
+    (inputs (list xauth))
     (native-inputs (list xcb-proto))
     (propagated-inputs (list emacs-compat))
     (home-page "https://github.com/emacs-exwm/xelb")
@@ -35412,12 +35420,199 @@ files are easily readable and they work nicely with version control systems.")
       (build-system emacs-build-system)
       (arguments
        (list #:include #~(cons "^data\\/" %default-include)
-             #:tests? #f))              ; no tests
+             #:tests? #f              ; no tests
+             #:phases
+             #~(modify-phases %standard-phases
+                 ;; The nerd-icons-install-fonts function would otherwise
+                 ;; download fonts from the network.  Replace it with a stub
+                 ;; that instructs the user to install the font via Guix.
+                 (add-after 'unpack 'disable-font-installer
+                   (lambda _
+                     (emacs-batch-edit-file "nerd-icons.el"
+                       '(progn
+                         (search-forward "(defun nerd-icons-install-fonts")
+                         (beginning-of-line)
+                         (kill-sexp)
+                         (insert "\
+(defun nerd-icons-install-fonts (&optional pfx)
+  (interactive \"P\")
+  (message \"To use nerd-icons fonts, install `font-nerd-symbols' using
+`guix package -i font-nerd-symbols' or add it to your manifest or home config.
+Remember, that you may have to run `fc-cache -rv' to refresh the font cache.\
+\"))")
+                         (basic-save-buffer))))))))
       (synopsis "Library for easily using nerd font icons inside Emacs")
       (description "Nerd-icons an alternative to all-the-icons.  It works on both
 GUI and terminal, and requires a nerd font installed on your system.")
       (license license:gpl3+))))
 
+(define-public emacs-nerd-icons-dired
+  ;; No tags provided upstream
+  (let ((commit "adf9a2bb5f3f13be7a676923639337f3fcc5d8c3")
+        (revision "0"))
+    (package
+      (name "emacs-nerd-icons-dired")
+      (version (git-version "0.0.1" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+                (url "https://github.com/rainstormstudio/nerd-icons-dired")
+                (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0x1xmwlfjgbk5kk4bxvgz4ykwwgiwmdbzhgsw49kpzz678a3qzrp"))))
+      (build-system emacs-build-system)
+      (arguments
+       (list
+        #:tests? #f))                   ;no tests
+      (propagated-inputs (list emacs-nerd-icons))
+      (home-page "https://github.com/rainstormstudio/nerd-icons-dired")
+      (synopsis "Icons for Dired via Nerd Icons")
+      (description
+       "This package adds icons to Dired, using the @code{nerd-icons} package.")
+      (license license:gpl3+))))
+
+(define-public emacs-nerd-icons-ivy-rich
+  ;; Tagged release is not up-to-date, according to the "Version:" keyword in
+  ;; main file.
+  (let ((commit "5006f91b49e86e232cdc1a628501b76124c41dac")
+        (revision "0"))
+    (package
+      (name "emacs-nerd-icons-ivy-rich")
+      (version (git-version "1.0.1" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+                (url "https://github.com/seagle0128/nerd-icons-ivy-rich")
+                (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0m62l4cl9j3ssd25rz40vgrv99bmwn6l4ig2sf8zzi0fpzm8axgh"))))
+      (build-system emacs-build-system)
+      (arguments
+       (list
+        #:tests? #f))                   ;tests require Cask
+      (propagated-inputs
+       (list emacs-ivy-rich
+             emacs-nerd-icons))
+      (home-page "https://github.com/seagle0128/nerd-icons-ivy-rich")
+      (synopsis "Icons for Ivy via Nerd Icons")
+      (description
+       "This package adds icons to Ivy, using the @code{ivy-rich} and
+@code{nerd-icons} packages.")
+      (license license:gpl3+))))
+
+(define-public emacs-nerd-icons-ibuffer
+  (package
+    (name "emacs-nerd-icons-ibuffer")
+    (version "1.0.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/seagle0128/nerd-icons-ibuffer")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1wj6kcgvh700maj9i5pmgzc48lbj0dbxx849a8w519m4anr7b23s"))))
+    (build-system emacs-build-system)
+    (arguments
+     (list
+      #:tests? #f))                   ;tests require Cask
+    (propagated-inputs
+     (list emacs-nerd-icons))
+    (home-page "https://github.com/seagle0128/nerd-icons-ibuffer")
+    (synopsis "Icons for Ibuffer via Nerd Icons")
+    (description
+     "This package adds icons to ibuffer in Emacs, using the @code{nerd-icons}
+package.")
+    (license license:gpl3+)))
+
+(define-public emacs-nerd-icons-completion
+  ;; No tags provided upstream
+  (let ((commit "63a6b3f1eb98bb381c86a1658ac401c8967079b8")
+        (revision "0"))
+    (package
+      (name "emacs-nerd-icons-completion")
+      (version (git-version "0.0.1" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+                (url "https://github.com/rainstormstudio/nerd-icons-completion")
+                (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "08p361rh5mv3ng10av1381kzl9s4msdjyca96hsgsh05qwq5pdrf"))))
+      (build-system emacs-build-system)
+      (arguments
+       (list
+        #:tests? #f))                   ;no tests
+      (propagated-inputs (list emacs-nerd-icons))
+      (home-page "https://github.com/rainstormstudio/nerd-icons-completion")
+      (synopsis "Icons for Emacs minibuffer completion via Nerd Icons")
+      (description
+       "This package adds icons to minibuffer completion in Emacs, using the
+@code{nerd-icons} package.  It supports @code{vertico} and @code{marginalia}.")
+      (license license:gpl3+))))
+
+(define-public emacs-nerd-icons-corfu
+  (package
+    (name "emacs-nerd-icons-corfu")
+    (version "1.0.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/LuigiPiucco/nerd-icons-corfu")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "036p45wqwrqhn5xv5sn3gsm2mb79gj6fk24zpkfa7wrv45qqgb21"))))
+    (build-system emacs-build-system)
+    (arguments
+     (list
+      #:tests? #f))                   ;no tests
+    (propagated-inputs
+     (list emacs-corfu
+           emacs-nerd-icons))
+    (home-page "https://github.com/LuigiPiucco/nerd-icons-corfu")
+    (synopsis "Icons for Corfu via Nerd Icons")
+    (description
+     "This package adds icons to @code{corfu}, using the @code{nerd-icons}
+package.")
+    (license license:gpl3+)))
+
+(define-public emacs-nerd-icons-mode-line
+  ;; No tags provided upstream
+  (let ((commit "23eca8e16799524889d661f4140355e81b8f929c")
+        (revision "0"))
+    (package
+      (name "emacs-nerd-icons-mode-line")
+      (version (git-version "0.0.1" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+                (url "https://github.com/grolongo/nerd-icons-mode-line")
+                (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0l2bg22cllab9wz5wxd6zhrywavqrlvv1a6y49ij63qhlsfncy6s"))))
+      (build-system emacs-build-system)
+      (arguments
+       (list
+        #:tests? #f))                   ;no tests
+      (propagated-inputs (list emacs-nerd-icons))
+      (home-page "https://github.com/grolongo/nerd-icons-mode-line")
+      (synopsis "Icons for the Emacs modeline via Nerd Icons")
+      (description
+       "This package adds icons to the modeline in Emacs, using the
+@code{nerd-icons} package.")
+      (license license:gpl3+))))
+
 (define-public emacs-all-the-icons
   ;; The latest release was on 3 June 2021.
   (let ((commit "4778632b29c8c8d2b7cd9ce69535d0be01d846f9")

gnu/packages/geo.scm

@@ -1219,20 +1219,23 @@ readily with other Python GIS packages such as pyproj, Rtree, and Shapely.")
 (define-public python-geopack
   (package
     (name "python-geopack")
-    (version "1.0.10")
+    (version "1.0.12")
     (source
      (origin
-       (method url-fetch)
-       (uri (pypi-uri "geopack" version))
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/tsssss/geopack")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "0mryjp7m4h99qlpvnn40s81sygr73qcv8rkmjp9pcli1gz829kjf"))))
+        (base32 "0ap5j4359xxjkbz06y097yq5d37sxcwlnlsfwrv6dvza7ydmgcgg"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       ;; XXX Reported upstream <https://github.com/tsssss/geopack/issues/21>.
       #:tests? #f))
     (native-inputs
-     (list python-pytest python-setuptools python-wheel))
+     (list python-setuptools))
     (propagated-inputs
      (list python-numpy python-scipy))
     (home-page "https://github.com/tsssss/geopack")

gnu/packages/gnome.scm

@@ -2598,6 +2598,92 @@ of Evince is to replace the multiple document viewers that exist
 on the GNOME Desktop with a single simple application.")
     (license license:gpl2+)))
 
+(define-public papers
+  (package
+    (name "papers")
+    (version "50.0")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://gnome/sources/papers/"
+                                  (version-major version) "/"
+                                  "papers-" version ".tar.xz"))
+              (sha256
+               (base32 "01dws72fb19i9jwp3r0khr7ym2ns51fifdzafb5dcr5w8vmj06rh"))))
+    (build-system meson-build-system)
+    (arguments
+     (list
+      #:glib-or-gtk? #t
+      #:configure-flags
+      #~(list (string-append "-Dc_link_args=-Wl,-rpath=" #$output "/lib"))
+      #:imported-modules `(,@%meson-build-system-modules
+                           ,@%cargo-build-system-modules)
+      #:modules `(((guix build cargo-build-system) #:prefix cargo:)
+                  (guix build meson-build-system)
+                  (guix build utils))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'prepare-for-build
+            (lambda _
+              (substitute* "meson.build"
+                (("gtk_update_icon_cache: true")
+                 "gtk_update_icon_cache: false")
+                (("update_desktop_database: true")
+                 "update_desktop_database: false"))
+              (substitute* "meson.build"
+                (("'Cargo.lock',")
+                  ""))
+              (delete-file "Cargo.lock")))
+          (add-after 'configure 'prepare-cargo-build-system
+            (lambda args
+              (for-each
+               (lambda (phase)
+                 (format #t "Running cargo phase: ~a~%" phase)
+                 (apply (assoc-ref cargo:%standard-phases phase)
+                        #:vendor-dir "vendor"
+                        #:cargo-target #$(cargo-triplet)
+                        args))
+               '(unpack-rust-crates
+                 configure
+                 check-for-pregenerated-files
+                 patch-cargo-checksums))
+
+              (setenv "RUSTFLAGS"
+                      (string-append (or (getenv "RUSTFLAGS") "")
+                                     " -C link-arg=-Wl,-rpath,"
+                                     #$output "/lib")))))))
+    (native-inputs
+     (cons* blueprint-compiler
+            gettext-minimal
+            `(,glib "bin")
+            gobject-introspection
+            gi-docgen
+            itstool
+            pkg-config
+            rust
+            `(,rust "cargo")
+            (or (and=> (%current-target-system)
+                       (compose list make-rust-sysroot))
+                '())))
+    (inputs
+     (cons* appstream
+            djvulibre
+            exempi
+            gtk
+            libadwaita
+            libarchive
+            libspelling
+            libtiff
+            nautilus                    ; for nautilus extension
+            poppler-next
+            zlib
+            (cargo-inputs 'papers)))
+    (home-page "https://apps.gnome.org/Papers")
+    ;; TODO: drop “new” when updating to GNOME 49 or newer.
+    (synopsis "GNOME's new document viewer")
+    (description "Papers is a document viewer capable of displaying multiple
+and single page document formats like PDF and DejaVu.")
+    (license license:gpl2+)))
+
 (define-public gsettings-desktop-schemas
   (package
     (name "gsettings-desktop-schemas")

gnu/packages/gnustep.scm

@@ -48,6 +48,34 @@
   #:use-module (gnu packages xml)
   #:use-module (ice-9 match))
 
+(define-public fsviewer
+  (package
+    (name "fsviewer")
+    (version "0.2.7")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/roblillack/fsviewer")
+              (commit (string-append "v" version))))
+       (sha256
+        (base32
+         "067fvbq7b4lbnn1flmwf8lm0vq4n6qz5yz6hhab30l4gksfk51cg"))
+       (file-name (git-file-name name version))))
+    (build-system cmake-build-system)
+    (arguments (list #:tests? #f))      ;no tests
+    (inputs
+     (list windowmaker libxmu libxpm))
+    (native-inputs
+     (list pkg-config))
+    (home-page "https://github.com/roblillack/fsviewer")
+    (synopsis "File viewer for Window Maker")
+    (description "FSViewer is a NeXT FileViewer lookalike for Window
+Maker supporting browser mode and list mode.  This version is a fork of
+FSViewer.app originally written by George Clernon (1998-99) and later
+maintained by Guido Scholz (2002-07).")
+    (license license:gpl2)))
+
 (define-public gnustep-make
   (package
     (name "gnustep-make")

gnu/packages/guile-xyz.scm

@@ -5790,7 +5790,7 @@ processing filters.")
 (define-public guile-pnm
   (package
     (name "guile-pnm")
-    (version "0.1.0")
+    (version "0.2.0")
     (source
      (origin
        (method git-fetch)
@@ -5799,7 +5799,7 @@ processing filters.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1yvsni4hll20g99zq4wl734f9i8gpjr1sqsnk3a93k2dd7b6ymac"))))
+        (base32 "06kgp1gh8hdj1j6w7i981prx93wfjpayrnjlydlzs7l5j04l4m3a"))))
     (build-system gnu-build-system)
     (arguments
      (list

gnu/packages/linux.scm

@@ -4914,7 +4914,7 @@ transparently through a bridge.")
 (define-public libnl
   (package
     (name "libnl")
-    (version "3.7.0")
+    (version "3.12.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -4923,7 +4923,7 @@ transparently through a bridge.")
                     "/libnl-" version ".tar.gz"))
               (sha256
                (base32
-                "0faryrbvp0x4s2zhg5d78vd5q4w34lrr736gpm9wcwpaxv5krr4z"))))
+                "066xq01y2mx0xi7bwa5y6ciw1ygla15qdlzzyvyzb8zijrqwllgw"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("bison" ,bison)
@@ -4938,7 +4938,7 @@ transparently through a bridge.")
                  (string-join (string-split version #\.) "_")
                  "/libnl-doc-" version ".tar.gz"))
            (sha256
-            (base32 "1ra8xdf06q9hlsrnc1yz67xkp4kd9sd27ff02mlixixnyyjp32sp"))))))
+            (base32 "18f14pdycghy6fcd27faqgh19zpam6b45s8bgsk85kb9wwzq3yd4"))))))
     (outputs `("out" "doc"))
     (arguments
      `(#:phases

gnu/packages/maths.scm

@@ -3995,6 +3995,45 @@ addition it can be used as a module in Python for plotting.  It supports
 vector and bitmap output, including PDF, Postscript, SVG and EMF.")
     (license license:gpl2+)))
 
+(define-public voro++
+  (package
+    (name "voro++")
+    (version "0.4.6")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://math.lbl.gov/" name "/download/dir/"
+                           name "-" version ".tar.gz"))
+       (sha256
+        (base32 "0zj3xbrqf8sm49yhypy23k3w9786r94kcwm8v803ikp23q3p0ygg"))))
+    (build-system gnu-build-system)
+    (arguments
+     (list
+      #:tests? #f       ;no tests
+      #:make-flags #~(list (string-append "PREFIX=" #$output))
+      #:phases
+      #~(modify-phases %standard-phases
+          (delete 'configure))))        ;no configure
+    (home-page "https://math.lbl.gov/voro++/")
+    (synopsis "C++ library for the computation of the Voronoi diagram")
+    (description
+     "Voro++ is a software library for carrying out three-dimensional
+computations of the Voronoi tessellation.  A distinguishing feature of the
+Voro++ library is that it carries out cell-based calculations, computing the
+Voronoi cell for each particle individually.  It is particularly well-suited
+for applications that rely on cell-based statistics, where features of Voronoi
+cells (eg. volume, centroid, number of faces) can be used to analyze a system
+of particles.
+
+Voro++ comprises of several C++ classes that can be built as a static library.
+A command-line utility is also provided that can use most features of the
+code.  The direct cell-by-cell construction makes the library particularly
+well-suited to handling special boundary conditions and walls.  It employs
+algorithms that are tolerant for numerical precision errors, it exhibits high
+performance, and it has been successfully employed on very large particle
+systems.")
+    (license license:bsd-3)))
+
 (define-public maxflow
   (package
     (name "maxflow")

gnu/packages/patches/libfossil-skip-amalgamation.patch

@@ -0,0 +1,43 @@
+--- a/Makefile.in
++++ b/Makefile.in
+@@ -265,15 +265,11 @@
+ amal.flags     = -nc
+ amal.run       = TOPDIR="$(DIR.top)" $(SHELL.bash) $(bin.make-amal) --quiet
+ 
+ libfossil.c: $(amal.deps)
+ 	$(amal.run) $(amal.flags)
+-libfossil.h: libfossil.c
+-all: libfossil.c
+ @if ENABLE_CXX
+-libfossil.hpp: libfossil.c
+-libfossil.c++: libfossil.c
+ amal.flags += -c++
+ @endif
+ 
+ .PHONY: amal
+ amal: libfossil.c
+@@ -287,19 +283,16 @@
+ 	fossil uv sync
+ @endif
+ @endif
+ 
+ install: install-headers
+-install-headers: libfossil.h $(install-dir.include)
+-	$(INSTALL.noexec) libfossil.h $(install-dir.include)
++install-headers: include/libfossil.h $(install-dir.include)
++	$(INSTALL.noexec) $< $(install-dir.include)
+ @if ENABLE_CXX
+-libfossil++.hpp: libfossil.h
+-libfossil++.cpp: libfossil++.hpp
+-all: libfossil++.cpp
+ install-headers: install-headers++
+-install-headers++: libfossil++.hpp $(install-dir.include)
+-	$(INSTALL.noexec) libfossil++.hpp $(install-dir.include)
++install-headers++: include/libfossil.hpp $(install-dir.include)
++	$(INSTALL.noexec) $< $(install-dir.include)
+ @endif # ENABLE_CXX
+ clean: clean-amalgamation
+ clean-amalgamation:
+ 	rm -f libfossil.c libfossil.h libfossil++.cpp libfossil++.hpp
+ 	rm -f libfossil-config.h libfossil-amalgamation.zip VERSION.h
+

gnu/packages/pdf.scm

@@ -472,6 +472,34 @@ Poppler gives access to the following binary programs:
    (license license:gpl2+)
    (home-page "https://poppler.freedesktop.org/")))
 
+(define-public poppler-next
+  (package
+    (inherit poppler)
+    (name "poppler-next")
+    (version "26.04.0")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://poppler.freedesktop.org/poppler-"
+                                  version ".tar.xz"))
+              (sha256
+               (base32
+                "14q69q6ipy3m4ywdhlr48qlscwzrv8jcns3g2306pyaa25im35dh"))))
+    (arguments (substitute-keyword-arguments arguments
+                 ((#:configure-flags flags)
+                  #~(cons*
+                     "-DENABLE_GPGME=OFF"
+                     "-DENABLE_QT5=OFF"
+                     "-DENABLE_QT6=OFF"
+                     #$flags))
+                 ((#:phases phases)
+                  #~(modify-phases #$phases
+                      (add-after 'install 'sanitize-pkg-config-files
+                        (lambda _
+                          (substitute* (find-files #$output "\\.pc$")
+                            (("^Requires.private:.*" all)
+                             (string-append "# " all)))))))))
+    (inputs (modify-inputs inputs (prepend curl)))))
+
 (define-public poppler-data
   (package
     (name "poppler-data")

gnu/packages/python-web.scm

@@ -167,6 +167,46 @@
   #:use-module (guix utils)
   #:use-module (srfi srfi-1))
 
+(define-public python-aioboto3
+  (package
+    (name "python-aioboto3")
+    (version "15.5.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/terricain/aioboto3")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "05644x17f9sl8mv9bp8l0rjcmw5x2ssyd5z1v3xmgcspk5qs6qn8"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:tests? #f ;XXX: all tests faild
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'relax-requirements
+            (lambda _
+              (substitute* "pyproject.toml"
+                (("aiobotocore\\[boto3\\]==2.25.1")
+                 "aiobotocore >= 2.25.1")))))))
+    (native-inputs
+     (list python-setuptools
+           python-setuptools-scm))
+    (propagated-inputs
+     (list python-aiobotocore
+           python-aiofiles
+           ;; [optional]
+           python-boto3
+           python-cryptography))
+    (home-page "https://github.com/terricain/aioboto3")
+    (synopsis "Async boto3 wrapper")
+    (description
+     "This package is mostly just a wrapper combining the great work of boto3
+and aiobotocore.")
+    (license license:asl2.0)))
+
 (define-public python-aiocoap
   (package
     (name "python-aiocoap")

gnu/packages/rust-crates.scm

@@ -9353,6 +9353,10 @@
   (crate-source "form_urlencoded" "1.2.2"
                 "1kqzb2qn608rxl3dws04zahcklpplkd5r1vpabwga5l50d2v4k6b"))
 
+(define rust-formatx-0.2.4
+  (crate-source "formatx" "0.2.4"
+                "02m0alndynacid8j6hx7iwpliq13szfhj6xfldzwhgzm72n6z1nq"))
+
 (define rust-four-cc-0.4.0
   (crate-source "four-cc" "0.4.0"
                 "0acnincbs26yjzkmdhw3q22c9dx5v56m1dybgkj7r6j1dp2vyp3r"))
@@ -10040,6 +10044,18 @@
   (crate-source "genetlink" "0.2.5"
                 "17q7zlmp95fx28zjkzh69g6d5q6rm2a3dkj7yy5jk8gsq5v0128z"))
 
+(define rust-geo-0.30.0
+  (crate-source "geo" "0.30.0"
+                "1q82kvy988axk2jndfd9xblj42phyha9gnbs7sd7x6fqf5v3j5j4"))
+
+(define rust-geo-types-0.7.18
+  (crate-source "geo-types" "0.7.18"
+                "0b58y1467yvxbqsvzgcpzbl0n0zgqr965mbwlhfs2pq0yix69y14"))
+
+(define rust-geographiclib-rs-0.2.5
+  (crate-source "geographiclib-rs" "0.2.5"
+                "0hbqkaxb2hld74kswrkf1cza0y53j8g8s4lalwlslzmk5c5084gn"))
+
 (define rust-get-size-derive2-0.6.2
   (crate-source "get-size-derive2" "0.6.2"
                 "1q3l3q3x3nas1qfkglccm9v49rgg0cn7hq7d9llyickqchi7m8bm"))
@@ -14479,6 +14495,26 @@
   (crate-source "hyprland-macros" "0.3.4"
                 "1sz4yhwi7d1s2wfpk9ql43dgmiq0j3j8skmrijpi55lp5vax6hf9"))
 
+(define rust-i-float-1.7.0
+  (crate-source "i_float" "1.7.0"
+                "0hw33gz4441yl9x2q7vkipmdrj406svwf5i4vigrbfr9d10kmpw5"))
+
+(define rust-i-key-sort-0.2.0
+  (crate-source "i_key_sort" "0.2.0"
+                "1kczb6y1523izrdf0mriaw46y5kb7c9wxjclmy5s58a88wxjaz1l"))
+
+(define rust-i-overlay-2.0.5
+  (crate-source "i_overlay" "2.0.5"
+                "0jgfbk1jm95210d4p5qv7svpy55n4l3cqgd0fhhx9zaa33pxyhh5"))
+
+(define rust-i-shape-1.7.0
+  (crate-source "i_shape" "1.7.0"
+                "1khv16yyvkp43pvrilpfd9vjkcbr1r56skwjzwc6fwkq4sjgaf0a"))
+
+(define rust-i-tree-0.8.3
+  (crate-source "i_tree" "0.8.3"
+                "0f8ic0myw6k6jvkl5rjviqmfk7m1309aaza7z4f1hw6pjyy82l8m"))
+
 (define rust-i18n-config-0.4.7
   (crate-source "i18n-config" "0.4.7"
                 "1j89hnd1d2zqfb1s9jgcd5vzf5a9iisfc18v324mpgn06540g24f"))
@@ -15210,6 +15246,10 @@
   (crate-source "inherent" "1.0.13"
                 "19zv61fmn71kwmdd33nq1c1l5qpw9dpmpw6j10jnwv2az85zh9y7"))
 
+(define rust-ink-stroke-modeler-rs-0.1.0
+  (crate-source "ink-stroke-modeler-rs" "0.1.0"
+                "1mmxi6w0b6r6imiggzdk0bi77cwpadpgf57xzkl45kdbsmk3077x"))
+
 (define rust-inkwell-0.2.0
   (crate-source "inkwell" "0.2.0"
                 "1hb9wdh6hfr8shdnx3hda2mrb2vgglqyc94f2ysggf509x5cnkrz"))
@@ -25251,6 +25291,10 @@
                 "0yqy3h6c13c73519bnwzmiv9nzxyl7sajl6n4q3lvnc4l77x5s0r"
                 #:snippet '(delete-file-recursively "tests")))
 
+(define rust-robust-1.2.0
+  (crate-source "robust" "1.2.0"
+                "0fcqw67hgs1k9parr6rbkhzkjbd1my9n44fb1v7sv80wp65yw9sf"))
+
 (define rust-rocket-0.5.1
   (crate-source "rocket" "0.5.1"
                 "0gypf9z6s0kshv33qq1vf16raw8xnr1p03ii0kfgf7d3jrr905m5"))
@@ -25418,6 +25462,10 @@
   (crate-source "rsqlite-vfs" "0.1.0"
                 "0kap86yzwl355byfs891185h723nxvl746fdp8gnpvrna0qz58d8"))
 
+(define rust-rstar-0.12.2
+  (crate-source "rstar" "0.12.2"
+                "1fsx2z2l6nq2fd95g9yvw1a9qvypllq9q6aqb3x6vlng7k8h0522"))
+
 (define rust-rstest-0.19.0
   (crate-source "rstest" "0.19.0"
                 "0c43nsxpm1b74jxc73xwg94is6bwqvfzkrr1xbqyx7j7l791clwx"))
@@ -67177,6 +67225,279 @@
                                  rust-zstd-0.13.3
                                  rust-zstd-safe-7.2.4
                                  rust-zstd-sys-2.0.15+zstd.1.5.7))
+                     (papers =>
+                             (list rust-adler2-2.0.1
+                                   rust-aes-0.8.4
+                                   rust-aho-corasick-1.1.4
+                                   rust-allocator-api2-0.2.21
+                                   rust-anstream-0.6.21
+                                   rust-anstyle-1.0.13
+                                   rust-anstyle-parse-0.2.7
+                                   rust-anstyle-query-1.1.5
+                                   rust-anstyle-wincon-3.0.11
+                                   rust-approx-0.5.1
+                                   rust-ashpd-0.12.1
+                                   rust-async-broadcast-0.7.2
+                                   rust-async-channel-2.5.0
+                                   rust-async-executor-1.13.3
+                                   rust-async-fs-2.2.0
+                                   rust-async-io-2.6.0
+                                   rust-async-lock-3.4.2
+                                   rust-async-net-2.0.0
+                                   rust-async-process-2.5.0
+                                   rust-async-recursion-1.1.1
+                                   rust-async-signal-0.2.13
+                                   rust-async-task-4.7.1
+                                   rust-async-trait-0.1.89
+                                   rust-atomic-waker-1.1.2
+                                   rust-autocfg-1.5.0
+                                   rust-bitflags-2.10.0
+                                   rust-block-0.1.6
+                                   rust-block-buffer-0.10.4
+                                   rust-block-padding-0.3.3
+                                   rust-blocking-1.6.2
+                                   rust-bumpalo-3.19.1
+                                   rust-bytemuck-1.24.0
+                                   rust-byteorder-1.5.0
+                                   rust-byteorder-lite-0.1.0
+                                   rust-cairo-rs-0.21.5
+                                   rust-cairo-sys-rs-0.21.5
+                                   rust-cbc-0.1.2
+                                   rust-cc-1.2.54
+                                   rust-cfg-expr-0.20.6
+                                   rust-cfg-if-1.0.4
+                                   rust-cipher-0.4.4
+                                   rust-colorchoice-1.0.4
+                                   rust-concurrent-queue-2.5.0
+                                   rust-cpufeatures-0.2.17
+                                   rust-crc32fast-1.5.0
+                                   rust-crossbeam-utils-0.8.21
+                                   rust-crypto-common-0.1.7
+                                   rust-digest-0.10.7
+                                   rust-displaydoc-0.2.5
+                                   rust-endi-1.1.1
+                                   rust-enumflags2-0.7.12
+                                   rust-enumflags2-derive-0.7.12
+                                   rust-env-filter-0.1.4
+                                   rust-env-logger-0.11.8
+                                   rust-equivalent-1.0.2
+                                   rust-errno-0.3.14
+                                   rust-event-listener-5.4.1
+                                   rust-event-listener-strategy-0.5.4
+                                   rust-fastrand-2.3.0
+                                   rust-fdeflate-0.3.7
+                                   rust-field-offset-0.3.6
+                                   rust-find-msvc-tools-0.1.8
+                                   rust-flate2-1.1.8
+                                   rust-float-next-after-1.0.0
+                                   rust-foldhash-0.2.0
+                                   rust-form-urlencoded-1.2.2
+                                   rust-formatx-0.2.4
+                                   rust-futures-0.3.31
+                                   rust-futures-channel-0.3.31
+                                   rust-futures-core-0.3.31
+                                   rust-futures-executor-0.3.31
+                                   rust-futures-io-0.3.31
+                                   rust-futures-lite-2.6.1
+                                   rust-futures-macro-0.3.31
+                                   rust-futures-sink-0.3.31
+                                   rust-futures-task-0.3.31
+                                   rust-futures-util-0.3.31
+                                   rust-gdk-pixbuf-0.21.5
+                                   rust-gdk-pixbuf-sys-0.21.5
+                                   rust-gdk4-0.10.3
+                                   rust-gdk4-sys-0.10.3
+                                   rust-generic-array-0.14.7
+                                   rust-geo-0.30.0
+                                   rust-geo-types-0.7.18
+                                   rust-geographiclib-rs-0.2.5
+                                   rust-getrandom-0.2.17
+                                   rust-getrandom-0.3.4
+                                   rust-gettext-rs-0.7.7
+                                   rust-gettext-sys-0.26.0
+                                   rust-gio-0.21.5
+                                   rust-gio-sys-0.21.5
+                                   rust-git-version-0.3.9
+                                   rust-git-version-macro-0.3.9
+                                   rust-glib-0.21.5
+                                   rust-glib-macros-0.21.5
+                                   rust-glib-sys-0.21.5
+                                   rust-gobject-sys-0.21.5
+                                   rust-graphene-rs-0.21.5
+                                   rust-graphene-sys-0.21.5
+                                   rust-gsk4-0.10.3
+                                   rust-gsk4-sys-0.10.3
+                                   rust-gtk4-0.10.3
+                                   rust-gtk4-macros-0.10.3
+                                   rust-gtk4-sys-0.10.3
+                                   rust-hash32-0.3.1
+                                   rust-hashbrown-0.16.1
+                                   rust-heapless-0.8.0
+                                   rust-heck-0.5.0
+                                   rust-hermit-abi-0.5.2
+                                   rust-hex-0.4.3
+                                   rust-hkdf-0.12.4
+                                   rust-hmac-0.12.1
+                                   rust-i-float-1.7.0
+                                   rust-i-key-sort-0.2.0
+                                   rust-i-overlay-2.0.5
+                                   rust-i-shape-1.7.0
+                                   rust-i-tree-0.8.3
+                                   rust-icu-collections-2.1.1
+                                   rust-icu-locale-core-2.1.1
+                                   rust-icu-normalizer-2.1.1
+                                   rust-icu-normalizer-data-2.1.1
+                                   rust-icu-properties-2.1.2
+                                   rust-icu-properties-data-2.1.2
+                                   rust-icu-provider-2.1.1
+                                   rust-idna-1.1.0
+                                   rust-idna-adapter-1.2.1
+                                   rust-image-0.25.9
+                                   rust-indexmap-2.13.0
+                                   rust-ink-stroke-modeler-rs-0.1.0
+                                   rust-inout-0.1.4
+                                   rust-is-terminal-polyfill-1.70.2
+                                   rust-jiff-0.2.18
+                                   rust-jiff-static-0.2.18
+                                   rust-js-sys-0.3.85
+                                   rust-lazy-static-1.5.0
+                                   rust-libadwaita-0.8.1
+                                   rust-libadwaita-sys-0.8.1
+                                   rust-libc-0.2.180
+                                   rust-libm-0.2.16
+                                   rust-linux-raw-sys-0.11.0
+                                   rust-litemap-0.8.1
+                                   rust-locale-config-0.3.0
+                                   rust-log-0.4.29
+                                   rust-lru-0.16.3
+                                   rust-malloc-buf-0.0.6
+                                   rust-md-5-0.10.6
+                                   rust-memchr-2.7.6
+                                   rust-memoffset-0.9.1
+                                   rust-miniz-oxide-0.8.9
+                                   rust-moxcms-0.7.11
+                                   rust-num-0.4.3
+                                   rust-num-bigint-0.4.6
+                                   rust-num-bigint-dig-0.8.6
+                                   rust-num-complex-0.4.6
+                                   rust-num-integer-0.1.46
+                                   rust-num-iter-0.1.45
+                                   rust-num-rational-0.4.2
+                                   rust-num-traits-0.2.19
+                                   rust-objc-0.2.7
+                                   rust-objc-foundation-0.1.1
+                                   rust-objc-id-0.1.1
+                                   rust-once-cell-1.21.3
+                                   rust-once-cell-polyfill-1.70.2
+                                   rust-oo7-0.5.0
+                                   rust-ordered-stream-0.2.0
+                                   rust-pango-0.21.5
+                                   rust-pango-sys-0.21.5
+                                   rust-parking-2.2.1
+                                   rust-pbkdf2-0.12.2
+                                   rust-percent-encoding-2.3.2
+                                   rust-pin-project-lite-0.2.16
+                                   rust-pin-utils-0.1.0
+                                   rust-piper-0.2.4
+                                   rust-pkg-config-0.3.32
+                                   rust-png-0.18.0
+                                   rust-polling-3.11.0
+                                   rust-portable-atomic-1.13.0
+                                   rust-portable-atomic-util-0.2.4
+                                   rust-potential-utf-0.1.4
+                                   rust-ppv-lite86-0.2.21
+                                   rust-proc-macro-crate-3.4.0
+                                   rust-proc-macro2-1.0.106
+                                   rust-pxfm-0.1.27
+                                   rust-quote-1.0.44
+                                   rust-r-efi-5.3.0
+                                   rust-rand-0.8.5
+                                   rust-rand-0.9.2
+                                   rust-rand-chacha-0.3.1
+                                   rust-rand-chacha-0.9.0
+                                   rust-rand-core-0.6.4
+                                   rust-rand-core-0.9.5
+                                   rust-regex-1.12.2
+                                   rust-regex-automata-0.4.13
+                                   rust-regex-syntax-0.8.8
+                                   rust-robust-1.2.0
+                                   rust-rstar-0.12.2
+                                   rust-rustc-version-0.4.1
+                                   rust-rustix-1.1.3
+                                   rust-rustversion-1.0.22
+                                   rust-semver-1.0.27
+                                   rust-serde-1.0.228
+                                   rust-serde-core-1.0.228
+                                   rust-serde-derive-1.0.228
+                                   rust-serde-repr-0.1.20
+                                   rust-serde-spanned-1.0.4
+                                   rust-sha2-0.10.9
+                                   rust-shell-words-1.1.1
+                                   rust-shlex-1.3.0
+                                   rust-signal-hook-registry-1.4.8
+                                   rust-simd-adler32-0.3.8
+                                   rust-slab-0.4.11
+                                   rust-smallvec-1.15.1
+                                   rust-spin-0.9.8
+                                   rust-stable-deref-trait-1.2.1
+                                   rust-subtle-2.6.1
+                                   rust-syn-2.0.114
+                                   rust-synstructure-0.13.2
+                                   rust-system-deps-7.0.7
+                                   rust-target-lexicon-0.13.3
+                                   rust-temp-dir-0.1.16
+                                   rust-tempfile-3.24.0
+                                   rust-thiserror-2.0.18
+                                   rust-thiserror-impl-2.0.18
+                                   rust-tinystr-0.8.2
+                                   rust-toml-0.9.11+spec-1.1.0
+                                   rust-toml-datetime-0.7.5+spec-1.1.0
+                                   rust-toml-edit-0.23.10+spec-1.0.0
+                                   rust-toml-parser-1.0.6+spec-1.1.0
+                                   rust-toml-writer-1.0.6+spec-1.1.0
+                                   rust-tracing-0.1.44
+                                   rust-tracing-attributes-0.1.31
+                                   rust-tracing-core-0.1.36
+                                   rust-typenum-1.19.0
+                                   rust-uds-windows-1.1.0
+                                   rust-unicode-ident-1.0.22
+                                   rust-url-2.5.8
+                                   rust-utf8-iter-1.0.4
+                                   rust-utf8parse-0.2.2
+                                   rust-uuid-1.20.0
+                                   rust-version-compare-0.2.1
+                                   rust-version-check-0.9.5
+                                   rust-wasi-0.11.1+wasi-snapshot-preview1
+                                   rust-wasip2-1.0.1+wasi-0.2.4
+                                   rust-wasm-bindgen-0.2.108
+                                   rust-wasm-bindgen-macro-0.2.108
+                                   rust-wasm-bindgen-macro-support-0.2.108
+                                   rust-wasm-bindgen-shared-0.2.108
+                                   rust-winapi-0.3.9
+                                   rust-winapi-i686-pc-windows-gnu-0.4.0
+                                   rust-winapi-x86-64-pc-windows-gnu-0.4.0
+                                   rust-windows-link-0.2.1
+                                   rust-windows-sys-0.61.2
+                                   rust-winnow-0.7.14
+                                   rust-wit-bindgen-0.46.0
+                                   rust-writeable-0.6.2
+                                   rust-yoke-0.8.1
+                                   rust-yoke-derive-0.8.1
+                                   rust-zbus-5.14.0
+                                   rust-zbus-macros-5.14.0
+                                   rust-zbus-names-4.3.1
+                                   rust-zerocopy-0.8.35
+                                   rust-zerocopy-derive-0.8.35
+                                   rust-zerofrom-0.1.6
+                                   rust-zerofrom-derive-0.1.6
+                                   rust-zeroize-1.8.2
+                                   rust-zeroize-derive-1.4.3
+                                   rust-zerotrie-0.2.3
+                                   rust-zerovec-0.11.5
+                                   rust-zerovec-derive-0.11.2
+                                   rust-zvariant-5.10.0
+                                   rust-zvariant-derive-5.10.0
+                                   rust-zvariant-utils-3.3.0))
                      (parinfer-rust =>
                                     (list rust-addr2line-0.24.2
                                      rust-adler2-2.0.0

gnu/packages/version-control.scm

@@ -68,6 +68,7 @@
 ;;; Copyright © 2025 Matthew Elwin <elwin@northwestern.edu>
 ;;; Copyright © 2025 Roman Scherer <roman@burningswell.com>
 ;;; Copyright © 2026 Ingar <ingar@onionmail.info>
+;;; Copyright © 2026 Nguyễn Gia Phong <cnx@loang.net>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -91,6 +92,7 @@
   #:use-module (guix deprecation)
   #:use-module (guix gexp)
   #:use-module (guix download)
+  #:use-module (guix fossil-download)
   #:use-module (guix git-download)
   #:use-module (guix hg-download)
   #:use-module (guix build-system cargo)
@@ -111,6 +113,7 @@
   #:use-module (gnu packages bash)
   #:use-module (gnu packages bison)
   #:use-module (gnu packages boost)
+  #:use-module (gnu packages build-tools)
   #:use-module (gnu packages check)
   #:use-module (gnu packages crypto)
   #:use-module (gnu packages curl)
@@ -3519,6 +3522,74 @@ output of the @code{git} command.")
 modification time.")
     (license license:bsd-2)))
 
+(define-public libfossil
+  (let ((ci "914ed6dcaff13bf7209c9f27ccfb77c2d8fdf36b8d2133aa1590258b0708f035")
+        (revision "0"))
+    (package
+      (name "libfossil")
+      (version (fossil-version "0.6.0" revision ci))
+      (source
+       (origin
+         (method fossil-fetch)
+         (uri (fossil-reference
+               (uri "https://fossil.wanderinghorse.net/r/libfossil")
+               (check-in ci)))
+         (file-name (fossil-file-name name version))
+         (sha256
+          (base32 "0a0ycnnba2izmiqjj8hgvjgjdwhpn0x36lhy3vmw4j7bhny0df52"))
+         (patches (search-patches "libfossil-skip-amalgamation.patch"))
+         (modules '((guix build utils)
+                    (ice-9 ftw)
+                    (srfi srfi-26)))
+         (snippet
+          #~(begin
+              (define (delete-all-but directory . preserve)
+                (with-directory-excursion directory
+                  (let* ((pred (negate (cut member <>
+                                            (cons* "." ".." preserve))))
+                         (items (scandir "." pred)))
+                    (for-each (cut delete-file-recursively <>) items))))
+              (delete-all-but "autosetup" "proj.tcl" "wh-common.tcl")
+              (delete-file-recursively "extsrc")
+              ;; Re-create Fossil check-out manifests,
+              ;; whose content does not affect in semantics.
+              (for-each
+                (lambda (file)
+                  (call-with-output-file file (const #t)))
+                '("manifest" "manifest.uuid"))))))
+      (build-system gnu-build-system)
+      (arguments
+       (list #:configure-flags
+             #~(list "--no-debug" "--no-fnc" ;TODO: C++ and Tcl binding?
+                     (string-append "--with-sqlite="
+                                    #$(this-package-input "sqlite"))
+                     (string-append "--soname=libfossil.so"))
+             #:phases
+             #~(modify-phases %standard-phases
+                 (replace 'configure
+                   (lambda* (#:key configure-flags #:allow-other-keys)
+                     (apply invoke "autosetup"
+                            (string-append "--prefix=" #$output)
+                            configure-flags)))
+                 (replace 'check
+                   (lambda* (#:key tests? #:allow-other-keys)
+                     (when tests?
+                       (substitute* "sanity-checks.sh"
+                         ;; FIXME: these tests requires a Fossil checkout.
+                         (("\\./f-sanity.*") "")
+                         (("\\./f-parseparty.*") ""))
+                       (setenv "LD_LIBRARY_PATH" (getcwd))
+                       (invoke "./sanity-checks.sh")))))))
+      (native-inputs (list autosetup))
+      (inputs (list sqlite-next zlib))
+      (home-page "https://fossil.wanderinghorse.net/r/libfossil")
+      (synopsis "Unofficial Fossil SCM Library API")
+      (description
+       "@code{libfossil} is an alternative interface into Fossil repositories,
+as opposed to a replacement for the core fossil application,
+intended for new ways to access and manipulate fossil repositories.")
+      (license license:bsd-2))))
+
 (define-public fnc
   (package
     (name "fnc")

gnu/services/nfs.scm

@@ -895,16 +895,18 @@ requirements.
 If @var{config} contains SMB mounts, adds samba-nmbd and samba-winbindd to the
 service requirements.
 "
-  (delete-duplicates
-   (fold
-    (lambda (fs-type acc)
-      (cond
-       ((string= "nfs" fs-type)
-        (append acc '(rpc.statd)))
-       ((string= "smb" fs-type)
-        (append acc '(samba-nmbd samba-winbindd)))))
-    '()
-    (map autofs-map-entry-type (autofs-configuration->raw-entries config)))))
+  (fold
+   (lambda (fs-type acc)
+     (cond
+      ((string= "nfs" fs-type)
+       (append acc '(rpc.statd)))
+      ((string= "smb" fs-type)
+       (append acc '(samba-nmbd samba-winbindd)))
+      (else acc)))
+   '()
+   (delete-duplicates
+    (map autofs-map-entry-type
+         (autofs-configuration->raw-entries config)))))
 
 (define (autofs-shepherd-service config)
   (match-record config <autofs-configuration> (autofs timeout)

guix/build/fossil.scm

@@ -0,0 +1,59 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2025 Nguyễn Gia Phong <cnx@loang.net>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
+;;;
+;;; Commentary:
+;;;
+;;; This is the build-side support code of (guix fossil-download).
+;;; It allows a Fossil repository to be opened at a specific revision.
+;;;
+;;; Code:
+
+(define-module (guix build fossil)
+  #:use-module (guix build utils)
+  #:use-module (ice-9 match)
+  #:use-module (srfi srfi-26)
+  #:use-module (srfi srfi-34)
+  #:use-module (srfi srfi-35)
+  #:use-module (web uri)
+  #:export (fossil-fetch))
+
+(define* (fossil-fetch uri check-in file #:key (fossil-command "fossil"))
+  "Fetch CHECK-IN from URI into DIRECTORY.  CHECK-IN must be a valid
+Fossil check-in name.  Return #t on success, else raise an exception."
+  (setenv "FOSSIL_HOME" "/tmp")
+  (invoke fossil-command
+    "tarball" check-in file "-R"
+    (case (uri-scheme (string->uri-reference uri))
+      ((file https)                     ;clone the repository first
+       (match-let ((repository (simple-format #f "/tmp/~a.fossil"
+                                 (basename file ".tar.gz")))
+                   ((input . output) (pipe)))
+         ;; Trust the TLS certificate of the server,
+         ;; since we'll later verify the tarball's checksum.
+         (display "y" output)
+         (close-port output)
+         (with-input-from-port input
+           (cut invoke fossil-command "clone"
+                "--no-open" "--once" uri repository))
+         (close-port input)
+         repository))
+      ((ssh)                            ;TODO: authentication for SSH
+       (let ((message (string-append "fetching a Fossil repository through SSH"
+                                     " is not supported: " uri)))
+         (raise (condition (&message (message message))))))
+      ((#f) uri))))                     ;local file

guix/fossil-download.scm

@@ -0,0 +1,125 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2025 Nguyễn Gia Phong <cnx@loang.net>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
+;;;
+;;; Commentary:
+;;;
+;;; An <origin> method that open Fossil checkout at a specific version.
+;;; The repository URI and version are specified
+;;; with a <fossil-reference> object.
+;;;
+;;; Code:
+
+(define-module (guix fossil-download)
+  #:use-module (guix build-system)
+  #:use-module (guix gexp)
+  #:use-module (guix modules)
+  #:use-module (guix monads)
+  #:use-module (guix packages)
+  #:use-module (guix records)
+  #:use-module (guix store)
+  #:use-module (ice-9 match)
+  #:use-module (srfi srfi-34)
+  #:use-module (srfi srfi-35)
+  #:use-module (web uri)
+  #:export (fossil-reference
+            fossil-reference?
+            fossil-reference-uri
+            fossil-reference-check-in
+
+            fossil-fetch
+            fossil-version
+            fossil-file-name))
+
+(define-record-type* <fossil-reference>
+  fossil-reference make-fossil-reference fossil-reference?
+  (uri      fossil-reference-uri)
+  (check-in fossil-reference-check-in))
+
+(define (fossil-version version revision check-in)
+  "Return the version string for packages using fossil-download."
+  ;; fossil-version is almost exclusively executed while modules
+  ;; are being loaded, leading to any errors hiding their backtrace.
+  ;; Avoid the mysterious error "Value out of range 0 to N: 10"
+  ;; when the check-in ID is too short, which can happen, for example,
+  ;; when the user swapped the revision and check-in arguments by mistake.
+  (when (< (string-length check-in) 10)
+    (raise
+      (condition
+       (&message (message "fossil-version: check-in ID unexpectedly short")))))
+  (string-append version "-" revision "." (string-take check-in 10)))
+
+(define (fossil-file-name name version)
+  "Return the file-name for packages using fossil-download."
+  (string-append name "-" version ".tar.gz"))
+
+(define* (fossil-fetch ref hash-algo hash
+                       #:optional name
+                       #:key (system (%current-system))
+                             (guile (default-guile))
+                             (fossil (@* (gnu packages version-control)
+                                         fossil)))
+  "Return a fixed-output derivation that fetches REF, a <fossil-reference>
+object.  The output is expected to have recursive hash HASH of type
+HASH-ALGO (a symbol).  Use NAME as the file name, or a generic name if #f."
+  (let* ((modules (source-module-closure '((guix build fossil)
+                                           (guix build download)
+                                           (guix build download-nar))))
+         (uri (fossil-reference-uri ref))
+         (scheme-of-uri (uri-scheme (string->uri-reference uri)))
+         (check-in (fossil-reference-check-in ref))
+         (tarball-name (or name (fossil-file-name (basename uri) check-in)))
+         (tarball-url (and (eq? 'https scheme-of-uri)
+                           (simple-format #f "~a/tarball/~a/~a"
+                             uri check-in tarball-name)))
+         (guile-json (@* (gnu packages guile) guile-json-4))
+         (gnutls (@* (gnu packages tls) guile-gnutls))
+         (guile-lzlib (@* (gnu packages guile) guile-lzlib))
+         (build
+          (with-imported-modules modules
+            (with-extensions (list guile-json gnutls ;for (guix swh)
+                                   guile-lzlib)
+              #~(begin
+                  (use-modules (guix build fossil)
+                               ((guix build download)
+                                #:select (download-method-enabled? url-fetch))
+                               (guix build download-nar))
+                  (or (and (download-method-enabled? 'upstream)
+                           (or (and #$tarball-url
+                                    (url-fetch #$tarball-url #$output))
+                               (fossil-fetch
+                                #$(if scheme-of-uri uri (local-file uri))
+                                #$check-in
+                                #$output
+                                #:fossil-command
+                                #+(file-append fossil "/bin/fossil"))))
+                      (and (download-method-enabled? 'nar)
+                           (download-nar #$output))))))))
+    (mlet %store-monad ((guile (package->derivation guile system)))
+      (gexp->derivation tarball-name build
+                        #:leaked-env-vars '("http_proxy" "https_proxy"
+                                            "COLUMNS" "USER")
+                        #:env-vars (match (getenv "GUIX_DOWNLOAD_METHODS")
+                                     (#f '())
+                                     (value
+                                      `(("GUIX_DOWNLOAD_METHODS" . ,value))))
+                        #:system system
+                        #:hash-algo hash-algo
+                        #:hash hash
+                        #:recursive? #t
+                        #:guile-for-build guile
+                        #:local-build? #t))))

guix/scripts/gc.scm

@@ -2,6 +2,7 @@
 ;;; Copyright © 2012-2013, 2015-2020, 2022, 2025 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2022 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2022 Remco van 't Veer <remco@remworks.net>
+;;; Copyright © 2026 jgart <jgart@dismail.de>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -140,6 +141,9 @@ current one."
 
         (option '("vacuum-database") #f #f
                 (lambda args
+                  (unless (zero? (getuid))
+                    (leave
+                      (G_ "vacuuming the database can only be used by root~%")))
                   (vacuum-database)
                   (exit 0)))