gnu: guix: Update development snapshot.

* gnu/packages/package-management.scm (guix-devel): Update to commit 43c082b.
  (guix): Set to GUIX-DEVEL.

.dir-locals.el

@@ -23,6 +23,7 @@
    (eval . (put 'lambda* 'scheme-indent-function 1))
    (eval . (put 'substitute* 'scheme-indent-function 1))
    (eval . (put 'modify-phases 'scheme-indent-function 1))
+   (eval . (put 'modify-services 'scheme-indent-function 1))
    (eval . (put 'with-directory-excursion 'scheme-indent-function 1))
    (eval . (put 'package 'scheme-indent-function 0))
    (eval . (put 'origin 'scheme-indent-function 0))

.gitignore

@@ -120,9 +120,16 @@ GTAGS
 /emacs/Makefile
 /emacs/guix-autoloads.el
 /emacs/guix-helper.scm
-/emacs/guix-init.el
-/emacs/guix-profiles.el
+/emacs/guix-config.el
 /doc/os-config-bare-bones.texi
 /doc/os-config-desktop.texi
 /doc/*.1
 /etc/guix-daemon.service
+/doc/images/bootstrap-graph.pdf
+/doc/images/coreutils-bag-graph.png
+/doc/images/coreutils-graph.png
+/doc/images/coreutils-size-map.eps
+/doc/images/service-graph.png
+/doc/images/service-graph.eps
+/doc/images/service-graph.pdf
+/doc/images/dmd-graph.png

.mailmap

@@ -3,6 +3,7 @@
 
 Alexander I. Grafov <grafov@gmail.com>
 Amirouche Boubekki <amirouche@hypermove.net>
+Andy Wingo <wingo@igalia.com> <wingo@pobox.com>
 Ben Woodcroft <b.woodcroft@uq.edu.au> <donttrustben@gmail.com>
 Claes Wallin (韋嘉誠) <claes.wallin@greatsinodevelopment.com>
 Cyprien Nicolas <cyprien@nicolas.tf> <c.nicolas+gitorious@gmail.com>
@@ -10,6 +11,7 @@ David Thompson <davet@gnu.org> <dthompson2@worcester.edu>
 David Thompson <davet@gnu.org> <dthompson@member.fsf.org>
 Deck Pickard <deck.r.pickard@gmail.com> <nebu@kipple>
 Eric Bavier <bavier@member.fsf.org> <ericbavier@gmail.com>
+Eric Dvorsak <eric@dvorsak.fr> <yenda1@gmail.com>
 John Darrington <jmd@gnu.org> <john@darrington.wattle.id.au>
 Joshua Grant <tadni@riseup.net> <gzg@riseup.net>
 Joshua Grant <tadni@riseup.net> <jgrant@parenthetical.io>

Makefile.am

@@ -48,6 +48,7 @@ MODULES =					\
   guix/nar.scm					\
   guix/derivations.scm				\
   guix/gnu-maintenance.scm			\
+  guix/upstream.scm				\
   guix/licenses.scm				\
   guix/build-system.scm				\
   guix/build-system/cmake.scm			\
@@ -58,6 +59,7 @@ MODULES =					\
   guix/build-system/perl.scm			\
   guix/build-system/python.scm			\
   guix/build-system/waf.scm			\
+  guix/build-system/r.scm			\
   guix/build-system/ruby.scm			\
   guix/build-system/trivial.scm			\
   guix/ftp-client.scm				\
@@ -77,6 +79,7 @@ MODULES =					\
   guix/build/gnu-dist.scm			\
   guix/build/perl-build-system.scm		\
   guix/build/python-build-system.scm		\
+  guix/build/r-build-system.scm			\
   guix/build/ruby-build-system.scm		\
   guix/build/waf-build-system.scm		\
   guix/build/haskell-build-system.scm		\
@@ -88,7 +91,6 @@ MODULES =					\
   guix/build/rpath.scm				\
   guix/build/cvs.scm				\
   guix/build/svn.scm				\
-  guix/build/syscalls.scm			\
   guix/build/gremlin.scm			\
   guix/build/emacs-utils.scm			\
   guix/build/graft.scm				\
@@ -98,8 +100,10 @@ MODULES =					\
   guix/import/gnu.scm				\
   guix/import/snix.scm				\
   guix/import/cabal.scm				\
+  guix/import/cran.scm				\
   guix/import/hackage.scm			\
   guix/import/elpa.scm   			\
+  guix/scripts.scm				\
   guix/scripts/download.scm			\
   guix/scripts/build.scm			\
   guix/scripts/archive.scm			\
@@ -113,6 +117,8 @@ MODULES =					\
   guix/scripts/refresh.scm			\
   guix/scripts/system.scm			\
   guix/scripts/lint.scm				\
+  guix/scripts/challenge.scm			\
+  guix/scripts/import/cran.scm			\
   guix/scripts/import/gnu.scm			\
   guix/scripts/import/nix.scm			\
   guix/scripts/import/hackage.scm		\
@@ -121,9 +127,19 @@ MODULES =					\
   guix/scripts/publish.scm			\
   guix/scripts/edit.scm				\
   guix/scripts/size.scm				\
+  guix/scripts/graph.scm			\
+  guix/scripts/container.scm			\
+  guix/scripts/container/exec.scm		\
   guix.scm					\
   $(GNU_SYSTEM_MODULES)
 
+if BUILD_SYSCALLS_MODULE
+
+MODULES +=					\
+  guix/build/syscalls.scm
+
+endif
+
 if BUILD_DAEMON_OFFLOAD
 
 MODULES +=					\
@@ -191,6 +207,7 @@ SCM_TESTS =					\
   tests/packages.scm				\
   tests/snix.scm				\
   tests/hackage.scm				\
+  tests/cran.scm				\
   tests/elpa.scm				\
   tests/store.scm				\
   tests/monads.scm				\
@@ -202,8 +219,12 @@ SCM_TESTS =					\
   tests/gremlin.scm				\
   tests/lint.scm				\
   tests/publish.scm				\
+  tests/scripts.scm				\
   tests/size.scm				\
+  tests/graph.scm				\
+  tests/challenge.scm				\
   tests/file-systems.scm			\
+  tests/services.scm				\
   tests/containers.scm
 
 if HAVE_GUILE_JSON
@@ -213,11 +234,13 @@ MODULES +=					\
   guix/import/pypi.scm				\
   guix/scripts/import/pypi.scm			\
   guix/import/cpan.scm				\
-  guix/scripts/import/cpan.scm
+  guix/scripts/import/gem.scm			\
+  guix/import/gem.scm
 
 SCM_TESTS += 					\
   tests/pypi.scm				\
-  tests/cpan.scm
+  tests/cpan.scm				\
+  tests/gem.scm
 
 endif
 
@@ -232,6 +255,8 @@ SH_TESTS =					\
   tests/guix-archive.sh				\
   tests/guix-authenticate.sh			\
   tests/guix-environment.sh			\
+  tests/guix-environment-container.sh		\
+  tests/guix-graph.sh				\
   tests/guix-lint.sh
 
 if BUILD_DAEMON
@@ -298,6 +323,13 @@ EXTRA_DIST +=					\
 
 endif !BUILD_DAEMON_OFFLOAD
 
+if !BUILD_SYSCALLS_MODULE
+
+EXTRA_DIST +=					\
+  guix/build/syscalls.scm
+
+endif !BUILD_SYSCALLS_MODULE
+
 
 CLEANFILES =					\
   $(GOBJECTS)					\
@@ -307,6 +339,10 @@ AM_V_GUILEC = $(AM_V_GUILEC_$(V))
 AM_V_GUILEC_ = $(AM_V_GUILEC_$(AM_DEFAULT_VERBOSITY))
 AM_V_GUILEC_0 = @echo "  GUILEC" $@;
 
+# Flags passed to 'guild compile'.
+GUILD_COMPILE_FLAGS =				\
+  -Wformat -Wunbound-variable -Warity-mismatch
+
 # Unset 'GUILE_LOAD_COMPILED_PATH' altogether while compiling.  Otherwise, if
 # $GUILE_LOAD_COMPILED_PATH contains $(moduledir), we may find .go files in
 # there that are newer than the local .scm files (for instance because the
@@ -322,8 +358,7 @@ AM_V_GUILEC_0 = @echo "  GUILEC" $@;
 	LC_ALL=C							\
 	$(top_builddir)/pre-inst-env					\
 	$(GUILD) compile -L "$(top_builddir)" -L "$(top_srcdir)"	\
-	  -Wformat -Wunbound-variable -Warity-mismatch			\
-	  --target="$(host)"						\
+	  $(GUILD_COMPILE_FLAGS) --target="$(host)"			\
 	  -o "$@" "$<"
 
 SUFFIXES = .go

NEWS

@@ -10,6 +10,264 @@ Copyright © 2013, 2014, 2015 Ludovic Courtès <ludo@gnu.org>
 
 Please send Guix bug reports to bug-guix@gnu.org.
 
+* Changes in 0.9.0 (since 0.8.3)
+
+** Package management
+
+*** New ‘guix graph’ command, to draw package graphs
+*** New ‘guix challenge’ command, to challenge the authenticity of binaries
+*** ‘guix environment’ has a new ‘--container’ option
+*** ‘guix substitute’ now honors all the specified substitute URLs
+*** New ‘guix import cran’ command, to import R packages from CRAN
+*** Package descriptions can now include Texinfo markup rendered on the fly
+*** ‘guix package’ has a new ‘--install-from-file’ option
+*** ‘guix package --search’ shows package outputs
+*** ‘guix refresh’ can refresh selected non-GNU package definitions
+*** The ‘--ad-hoc’ option of ‘guix environment’ is now positional
+*** The ‘--exec’ option of ‘guix environment’ is deprecated; use ‘--’ instead
+*** ‘guix build’ has a new ‘--file’ option
+*** ‘guix build --log-file’ can now return URLs
+*** ‘guix size’ now has a ‘--substitute-urls’ option and is much faster
+*** New ‘guix lint’ checkers: ‘formatting’, ‘license’, ‘source-file-name’
+*** Download progress report has been improved
+*** Emacs shell-mode completions for ‘guix’ commands updated
+*** Emacs: New ‘M-x guix’ popup interface
+
+** Distribution
+
+*** New extensible service composition API
+
+The operating system service API in (gnu services) has been completely
+rewritten, significantly improving extensibility and modularity, while
+providing a framework that makes it easy to reason about service composition.
+Consequently, several sources of redundancy and confusion in
+‘operating-system’ declarations have been eliminated.  See “Service
+Composition” in the manual.
+
+*** New ‘extension-graph’ and ‘dmd-graph’ sub-commands for ‘guix system’
+*** New ‘container’ sub-command for ‘guix system’
+*** New ‘guix container’ command, to deal with GuixSD containers
+*** New ‘list-generations’ sub-command for ‘guix system’
+*** ‘operating-system’ has a new ‘locale-libcs’ field
+*** New services: ‘nginx-service’, ‘udisks-service’, ‘guix-publish-service’
+*** ‘%desktop-services’ now includes Polkit, GeoClue, elogind, UDisks, and more
+*** ‘dbus-daemon’ now has proper support for lazy service activation
+*** ‘wicd-service’ automatically adds Wicd to the system profile
+*** ‘slim-service’ automatically adds xterm to the system profile
+*** hydra.gnu.org now provides substitutes for ‘armhf-linux’
+*** /run/systemd is mounted as tmpfs by default, for use by elogind
+*** ‘glibc’ package no longer contains Bash in its bin/ directory
+*** libc now looks for locale data in a versioned sub-directory
+*** libc honors the new ‘GUIX_LOCPATH’ environment variable
+*** Xfce now defaults to the GNOME icon theme
+*** 543 new packages
+
+abduco, accountsservice, american-fuzzy-lop, ansible, arandr, attic,
+autobuild, bash-minimal, bash-static, bio-blastxmlparser, bio-locus,
+bioperl-minimal, bioruby, bitcoin-core, bspwm, byobu, cabal-install, cityhash,
+clang-runtime, clang-runtime, cm, cmus, conky, coreutils-minimal, cpphs,
+cvs-fast-export, d-feet, deeptools, diffoscope, dosbox, dvtm, emacs-butler,
+emacs-dash, emacs-debbugs, emacs-deferred, emacs-f, emacs-flycheck,
+emacs-let-alist, emacs-ob-ipython, emacs-s, emacs-typo, enblend-enfuse,
+epiphany, esmtp, ethtool, evilwm, exfat-utils, express-beta-diversity,
+extra-cmake-modules, extundelete, fastcap, fasthenry, figlet, file-roller,
+flann, font-anonymous-pro, font-gnu-unifont, font-inconsolata, font-tex-gyre,
+font-ubuntu, frescobaldi, fuse-exfat, gajim, gamine, gerbv, gexiv2,
+ghc-adjunctions, ghc-aeson, ghc-alex, ghc-annotated-wl-pprint,
+ghc-ansi-terminal, ghc-ansi-wl-pprint, ghc-appar, ghc-async, ghc-attoparsec,
+ghc-auto-update, ghc-base-compat, ghc-base-orphans, ghc-base64-bytestring,
+ghc-bifunctors, ghc-blaze-builder, ghc-blaze-html, ghc-blaze-markup,
+ghc-byteorder, ghc-bytestring-builder, ghc-cereal, ghc-cgi, ghc-charset,
+ghc-cheapskate, ghc-clock, ghc-cmdargs, ghc-comonad, ghc-contravariant,
+ghc-cookie, ghc-css-text, ghc-data-default, ghc-data-default-class,
+ghc-data-default-instances-base, ghc-data-default-instances-containers,
+ghc-data-default-instances-dlist, ghc-data-default-instances-old-locale,
+ghc-digest, ghc-distributive, ghc-dlist, ghc-doctest, ghc-easy-file,
+ghc-exceptions, ghc-extensible-exceptions, ghc-extra, ghc-fast-logger,
+ghc-fingertree, ghc-free, ghc-generic-deriving, ghc-gluraw, ghc-glut,
+ghc-haddock, ghc-haddock-api, ghc-haddock-library, ghc-half, ghc-happy,
+ghc-haskell-src, ghc-haskell-src-exts, ghc-hspec, ghc-hspec-core,
+ghc-hspec-expectations, ghc-hspec-meta, ghc-html, ghc-http-types, ghc-iproute,
+ghc-kan-extensions, ghc-lens, ghc-lifted-base, ghc-logict, ghc-mmorph,
+ghc-monad-control, ghc-multipart, ghc-nats, ghc-objectname, ghc-old-locale,
+ghc-old-time, ghc-opengl, ghc-openglraw, ghc-optparse-applicative,
+ghc-parsers, ghc-pcre-light, ghc-polyparse, ghc-prelude-extras,
+ghc-profunctors, ghc-quickcheck-instances, ghc-quickcheck-io,
+ghc-quickcheck-unicode, ghc-reducers, ghc-reflection, ghc-regex-base,
+ghc-regex-compat, ghc-regex-posix, ghc-regex-tdfa-rc, ghc-resourcet, ghc-safe,
+ghc-scientific, ghc-sdl, ghc-sdl-image, ghc-sdl-mixer, ghc-semigroupoids,
+ghc-semigroups, ghc-setenv, ghc-silently, ghc-simple-reflect, ghc-smallcheck,
+ghc-statevar, ghc-streaming-commons, ghc-stringbuilder, ghc-stringsearch,
+ghc-tagged, ghc-tagsoup, ghc-tasty, ghc-tasty-ant-xml, ghc-tasty-golden,
+ghc-tasty-hunit, ghc-tasty-quickcheck, ghc-tasty-smallcheck, ghc-temporary,
+ghc-temporary-rc, ghc-transformers-base, ghc-transformers-compat,
+ghc-trifecta, ghc-unbounded-delays, ghc-uniplate, ghc-unix-compat,
+ghc-unix-time, ghc-utf8-string, ghc-vault, ghc-vector-binary-instances,
+ghc-void, ghc-wai, ghc-wai-extra, ghc-wai-logger, ghc-word8, ghc-x11,
+ghc-x11-xft, ghc-xhtml, ghc-xml, ghc-xmonad-contrib, ghc-xss-sanitize,
+ghc-zip-archive, glibc-hurd, glibc-hurd-headers, gmtp, graphios, gtk-doc,
+guile-next, guile-present, guile-redis, guile-rsvg, guile-wisp, gusb, gvfs,
+gzochi, haunt, hlint, hscolour, hspec-discover, hurd-minimal, i3-wm, i3status,
+ibus-libpinyin, idris, ifstatus, keepassx, klick, kwindowsystem, lablgtk,
+libatasmart, libchamplain, libchop, libconfuse, libcue, libesmtp, libev,
+libfm, libfm-extra, libgee, libgudev, liblxqt, libndp, libpano13, libpinyin,
+libraw, libusb-compat, libyajl, lxqt-common, lxqt-session, lxrandr, lxtask,
+lxterminal, lz4, mafft, manaplus, mars, menu-cache, minixml, mosaik,
+nestopia-ue, newt, non-sequencer, ntk, openimageio, opusfile, patches, pbzip2,
+pcmanfm, pcre2, pd, pelican, perl-czplib, perl-date-manip, perl-finance-quote,
+perl-html-element-extended, perl-html-tableextract, perl-pod-simple, physfs,
+pidgin, pidgin-otr, pigz, po4a, poppler-qt4, pwgen, python-appdirs,
+python-bandit, python-blinker, python-ccm, python-chardet,
+python-cryptography, python-cryptography-vectors, python-debian,
+python-debtcollector, python-ecdsa, python-file, python-fonttools,
+python-gnupg, python-hacking, python-httplib2, python-idna,
+python-ipython-genutils, python-iso8601, python-joblib, python-libarchive-c,
+python-llfuse, python-ly, python-minimal, python-minimal, python-mistune,
+python-monotonic, python-mox3, python-msgpack, python-nbxmpp, python-netaddr,
+python-numexpr, python-os-client-config, python-os-testr, python-oslo.config,
+python-oslo.context, python-oslo.i18n, python-oslo.log,
+python-oslo.serialization, python-oslo.utils, python-oslosphinx,
+python-oslotest, python-paramiko, python-passlib, python-pathpy, python-patsy,
+python-pbr, python-pbr, python-pexpect, python-pickleshare, python-pip,
+python-poppler-qt4, python-pretend, python-prettytable, python-ptyprocess,
+python-py-bcrypt, python-pyasn1, python-pyopenssl, python-pytest-runner,
+python-requests-mock, python-setuptools-scm, python-simplegeneric,
+python-statsmodels, python-stevedore, python-tempest-lib, python-terminado,
+python-tlsh, python-traitlets, python-webob, python-wrapt, python-xlrd,
+python2-appdirs, python2-bandit, python2-blinker, python2-ccm,
+python2-chardet, python2-cryptography, python2-cryptography-vectors,
+python2-debian, python2-debtcollector, python2-ecdsa, python2-file,
+python2-fonttools, python2-gnupg, python2-hacking, python2-httplib2,
+python2-idna, python2-ipaddress, python2-ipython-genutils, python2-iso8601,
+python2-joblib, python2-keyring, python2-libarchive-c, python2-llfuse,
+python2-mistune, python2-monotonic, python2-mox3, python2-msgpack,
+python2-nbxmpp, python2-netaddr, python2-notmuch, python2-numexpr,
+python2-os-client-config, python2-os-testr, python2-oslo.config,
+python2-oslo.context, python2-oslo.i18n, python2-oslo.log,
+python2-oslo.serialization, python2-oslo.utils, python2-oslosphinx,
+python2-oslotest, python2-paramiko, python2-passlib, python2-pathpy,
+python2-patsy, python2-pbr, python2-pbr, python2-pexpect, python2-pickleshare,
+python2-pip, python2-pretend, python2-prettytable, python2-ptyprocess,
+python2-py-bcrypt, python2-pyasn1, python2-pycrypto, python2-pyopenssl,
+python2-pytest-runner, python2-requests-mock, python2-setuptools-scm,
+python2-simplegeneric, python2-statsmodels, python2-stevedore,
+python2-tempest-lib, python2-terminado, python2-tlsh, python2-traitlets,
+python2-webob, python2-wrapt, python2-xlrd, r-assertthat, r-bh, r-chron,
+r-codetools, r-colorspace, r-crayon, r-data.table, r-dbi, r-dichromat,
+r-digest, r-dplyr, r-evaluate, r-formatr, r-ggplot2, r-gtable, r-highr,
+r-htmltools, r-htmlwidgets, r-httpuv, r-jsonlite, r-knitr, r-labeling,
+r-lazyeval, r-magrittr, r-markdown, r-memoise, r-microbenchmark, r-mime,
+r-munsell, r-plyr, r-proto, r-pryr, r-qtl, r-r6, r-rcolorbrewer, r-rcpp,
+r-reshape2, r-scales, r-servr, r-stringi, r-stringr, r-testthat, r-yaml, rage,
+raincat, redis, rest, rfkill, rpm, ruby-activesupport, ruby-atoulme-antwrap,
+ruby-bio-logger, ruby-builder, ruby-byebug, ruby-coderay, ruby-cucumber-core,
+ruby-diff-lcs, ruby-docile, ruby-ffi, ruby-formatador, ruby-gherkin3,
+ruby-json, ruby-libxml, ruby-listen, ruby-log4r, ruby-lumberjack,
+ruby-method-source, ruby-mini-portile, ruby-minitar, ruby-nenv, ruby-nokogiri,
+ruby-notiffany, ruby-orderedhash, ruby-ox, ruby-permutation, ruby-pg,
+ruby-pry, ruby-rack, ruby-rb-inotify, ruby-rjb, ruby-rubygems-tasks,
+ruby-shellany, ruby-shindo, ruby-simplecov-html, ruby-thor, ruby-thread-safe,
+ruby-tzinfo, ruby-xml-simple, ruby-yard, sassc, scmutils, seqmagick, shotwell,
+shroud, simple-scan, squashfs-tools, sxhkd, tinc, udisks, unison, vsearch,
+webkitgtk-gtk2, wesnoth, wpa-supplicant-minimal, xcb-util-cursor, xcompmgr,
+xfce4-pulseaudio-plugin, xjackfreak, xlsfonts, xmonad, yapet, yelp,
+yelp-tools, yelp-xsl, znc, zynaddsubfx
+
+*** 268 package updates
+
+abcde-2.7, arb-2.7.0, ardour-4.2, at-spi2-atk-2.18.1, at-spi2-core-2.18.1,
+ath9k-htc-firmware-1.4.0, atk-2.18.0, atkmm-2.24.1, autogen-5.18.6,
+avidemux-2.6.10, bedtools-2.24.0, binutils-2.25.1,
+binutils-static-stripped-tarball-2.25.1, bison-3.0.4, bluez-5.35,
+bundler-1.10.6, c-reduce-2.3.0, cairomm-1.12.0, calcurse-4.0.0,
+calibre-2.41.0, camlp5-6.14, cgal-4.6.3, chess-6.2.2, clang-3.6.2,
+claws-mail-3.13.0, cmake-3.3.2, complexity-1.3, conkeror-1.0pre1.20150730,
+cpio-2.12, crossmap-0.2.1, csound-6.05, cups-2.1.0, cups-filters-1.0.75,
+cups-minimal-2.1.0, curl-7.45.0, dbus-1.10.0, dbus-1.10.0.a, ddrescue-1.20,
+dmd-0.2.01, docbook-xml-4.4, docbook-xml-4.5, dosfstools-3.0.28,
+e2fsck-static-1.42.13, e2fsprogs-1.42.13, efl-1.15.2, eigen-3.2.6,
+elementary-1.15.2, emotion-generic-players-1.15.0, enlightenment-0.19.12,
+eudev-3.1.5, evas-generic-loaders-1.15.0, feh-2.14, ffmpeg-2.8, fish-2.2.0,
+flint-2.5.2, fontconfig-2.11.94, freeglut-3.0.0, freeimage-3.17.0,
+freeipmi-1.4.11, gcc-4.9.3, gcc-4.9.3, gcc-4.9.3, gcc-5.2.0,
+gcc-toolchain-5.2.0, gcj-4.9.3, gdb-7.10, gdk-pixbuf-2.32.1, geiser-0.8.1,
+gettext-0.19.6, ghc-7.10.2, ghc-hashable-1.2.3.3, ghc-http-4000.2.20,
+ghc-mtl-2.2.1, ghc-network-2.6.2.1, ghc-network-uri-2.6.0.3,
+ghc-primitive-0.6.1.0, ghc-quickcheck-2.8.1, ghc-syb-0.6, ghc-text-1.2.1.3,
+ghc-vector-0.11.0.0, giflib-5.1.1, git-2.5.0, git-manpages-2.5.0,
+git-modes-1.2.0, glib-2.46.1, glib-networking-2.46.1, glibc-2.22,
+glibc-locales-2.22, glibc-stripped-tarball-2.22, glibc-utf8-locales-2.22,
+glibmm-2.46.1, global-6.5.1, glpk-4.56, gnome-desktop-3.16.2,
+gnome-themes-standard-3.16.2, gnu-pw-mgr-1.6, gnumach-headers-1.6,
+gnupg-2.1.9, gnurl-7.45.0, gnutls-3.4.5, gobject-introspection-1.46.0,
+gp2c-0.0.9pl3, graphite2-1.3.3, graphviz-2.38.0,
+gsettings-desktop-schemas-3.18.0, gsl-2.0, gst-libav-1.6.1,
+gst-plugins-base-1.6.1, gst-plugins-good-1.6.1, gst-plugins-ugly-1.6.1,
+gstreamer-1.6.1, gtk+-3.18.2, gtkmm-3.18.0, guile-ssh-0.8.0, guitarix-0.33.0,
+guix-0.8.3, guix-0.8.3.b485f75, harfbuzz-1.0.5, help2man-1.47.2,
+hurd-headers-0.7, ibus-1.5.11, icecat-38.3.0-gnu1, icedtea6-1.13.8,
+icedtea7-2.6.2, imagemagick-6.9.2-1, intltool-0.51.0, json-glib-1.0.4,
+leptonica-1.72, less-481, libbluray-0.9.0, libcap-2.24, libdrm-2.4.65,
+libdvdcss-1.3.99, libedit-20150325-3.1, libgcrypt-1.6.3, libgsf-1.14.34,
+libidn-1.32, libinput-0.21.0, libmicrohttpd-0.9.45, libmtp-1.1.9,
+libotr-4.1.0, libpcap-1.7.4, libpciaccess-0.13.4, libqtxdg-1.2.0,
+librsvg-2.40.11, libsigc++-2.6.1, libsoup-2.52.1, libssh-0.6.5, libtiff-4.0.5,
+libtorrent-0.13.6, libva-1.6.1, lilypond-2.19.27, links-2.12,
+linux-libre-4.2.5, linux-pam-1.2.1, lirc-0.9.3, llvm-3.6.2, lua-5.2.3,
+lzo-2.09, magit-2.3.0, mesa-11.0.3, mesa-headers-11.0.3, mig-1.6,
+minetest-0.4.13, mosh-1.2.5, mpg123-1.22.4, mplayer-1.2, mpv-0.11.0,
+mu-0.9.13, mutt-1.5.24, ncdu-1.11, ncmpcpp-0.6.7, ncurses-6.0, node-0.12.7,
+notmuch-0.20.2, ntp-4.2.8p4, ocaml-4.02.3, offlineimap-6.5.7, openblas-0.2.15,
+openjpeg-2.1.0, openldap-2.4.42, openssh-7.0p1, orc-0.4.24, pango-1.38.1,
+pangomm-2.38.1, parallel-20151022, pavucontrol-3.0,
+pbtranscript-tofu-2.2.3.8f5467fe6, pciutils-3.3.1, perf-4.2.5,
+perl-xml-parser-2.44, pixman-0.32.8, poppler-0.37.0, powertop-2.7,
+python-cffi-1.2.1, python-dateutil-2.2, python-fixtures-1.3.1,
+python-ipython-3.2.1, python-pyflakes-0.9.2, python-pygobject-3.18.0,
+python-pyqt-4.11.4, python-pyqt-5.5, python-requests-2.8.0,
+python-scipy-0.16.0, python-setuptools-18.3.1, python-sip-4.16.9,
+python-six-1.9.0, python2-cffi-1.2.1, python2-dateutil-2.2,
+python2-fixtures-1.3.1, python2-ipython-3.2.1, python2-pygobject-3.18.0,
+python2-pyqt-4.11.4, python2-pyqt-5.5, python2-requests-2.8.0,
+python2-scipy-0.16.0, python2-setuptools-18.3.1, python2-sip-4.16.9,
+python2-six-1.9.0, qemu-2.4.0.1, qemu-headless-2.4.0.1, qpdf-5.1.3,
+qsynth-0.4.0, qt-5.5.1, r-3.2.2, racket-6.2.1, ratpoison-1.4.8, readline-6.3,
+retroarch-1.2.2, ripperx-2.8.0, rtorrent-0.9.6, ruby-2.2.3, ruby-arel-6.0.3,
+ruby-bacon-1.2.0, ruby-i18n-0.7.0, samtools-1.2, sfarklib-2.24, sfml-2.3.2,
+shadow-4.2.1, sipwitch-1.9.14, sqlite-3.8.11.1, subversion-1.8.14,
+synergy-1.7.4, tcl-8.6.4, tcpdump-4.7.4, teckit-2.5.4, terminology-0.9.1,
+texlive-2015, texlive-bin-2015, texlive-texmf-2015, tiled-0.13.1, tk-8.6.4,
+tmux-2.0, tor-0.2.6.10, ucommon-6.6.2, units-2.12, util-linux-2.27,
+vala-0.30.0, valgrind-3.11.0, vlc-2.2.1, webkitgtk-2.8.5, weechat-1.3,
+wine-1.7.52, wpa-supplicant-2.5, xapian-1.2.21, xterm-320,
+youtube-dl-2015.11.01, zsh-5.1.1
+
+** Programming interfaces
+
+*** Rewritten (gnu services) module; (gnu services …) modules adjusted
+*** New Emacs development tools, see “Development” in the manual
+*** (guix gexp) provides the declarative ‘computed-file’, ‘program-file’, etc.
+*** New (guix upstream) module, for generalized upstream release tracking
+
+** Noteworthy bug fixes
+
+*** Passwords in /etc/shadow are SHA512-hashed (http://bugs.gnu.org/21318)
+*** daemon: Require a signature for imports made by root
+    (http://bugs.gnu.org/21354)
+*** emacs: Fix guix-guile-program default value (http://bugs.gnu.org/21127)
+*** Compressed initrds no longer include timestamps
+*** Partly fix handling of encrypted root partitions
+    (http://bugs.gnu.org/19190)
+*** Python now includes tkinter (http://bugs.gnu.org/20889)
+*** Memoize the results of ‘package-with-python2’ (http://bugs.gnu.org/21675)
+*** Use the daemon's substitute URLs by default (http://bugs.gnu.org/20217)
+*** ‘guix system --no-grub’ works correctly for ‘init’ and ‘reconfigure’
+    (http://bugs.gnu.org/21068)
+
+** Native language support
+
+*** Updated translations: da
+
 * Changes in 0.8.3 (since 0.8.2)
 
 ** Package management

README

@@ -59,7 +59,6 @@ To do so:
       guix environment guix
 
   - Re-run the 'configure' script passing it the option
-    '--with-libgcrypt-prefix=$HOME/.guix-profile/', as well as
     '--localstatedir=/somewhere', where '/somewhere' is the 'localstatedir'
     value of the currently installed Guix (failing to do that would lead the
     new Guix to consider the store to be empty!).

THANKS

@@ -13,18 +13,23 @@ infrastructure help:
 	   Daniel Clark <dclark@pobox.com>
 	Alexandru Cojocaru <xojoc@gmx.com>
 	    Aleix Conchillo Flaqué <aconchillo@gmail.com>
+          Malcolm Cook <MEC@stowers.org>
 	   Rafael Ferreira <rafael.f.f1@gmail.com>
 	Christian Grothoff <christian@grothoff.org>
+             Eric Hanchrow <eric.hanchrow@gmail.com>
            Konrad Hinsen <konrad.hinsen@fastmail.net>
           Brandon Invergo <brandon@gnu.org>
+           Anders Jonsson <anders.jonsson@norsjovallen.se>
 	  Jeffrin Jose <ahiliation@yahoo.co.in>
 	          Kete <kete@ninthfloor.org>
            Daniel Kochmański <dkochmanski@hellsgate.pl>
 	  Matthew Lien <bluet@bluet.org>
-	    Niels Möller <nisse@lysator.liu.se>
+             Dave Love <fx@gnu.org>
+            Niels Möller <nisse@lysator.liu.se>
           Cyprien Nicolas <cyprien@nicolas.tf>
 	   Yutaka Niibe <gniibe@fsij.org>
            Andrei Osipov <andrspv@gmail.com>
+                  Petter <petter@mykolab.ch>
              Adam Pribyl <pribyl@lowlevel.cz>
             Pjotr Prins <pjotr.public12@thebird.nl>
   Yakkala Yagnesh Raghava <hi@yagnesh.org>
@@ -35,6 +40,7 @@ infrastructure help:
         Alexander Shendi <Alexander.Shendi@web.de>
 	     Alen Skondro <askondro@gmail.com>
 	 Matthias Wachs <wachs@net.in.tum.de>
+Christopher Allan Webber <cwebber@dustycloud.org>
            Philip Woods <elzairthesorcerer@gmail.com>
 
 GNU Guix also includes non-software works.  Thanks to the following

build-aux/hydra/demo-os.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2014, 2015 Ludovic Courtès <ludo@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -23,13 +23,13 @@
 ;;;
 
 (use-modules (gnu))
-(use-service-modules desktop xorg networking avahi)
+(use-service-modules desktop xorg networking avahi dbus)
 (use-package-modules linux xorg tor avahi)
 
 (operating-system
  (host-name "gnu")
  (timezone "Europe/Paris")
- (locale "en_US.UTF-8")
+ (locale "en_US.utf8")
 
  (bootloader (grub-configuration
               (device "/dev/sda")))
@@ -71,7 +71,7 @@ You can log in as 'guest' or 'root' with no password.
                                              #:gateway "10.0.2.2")
 
                   (avahi-service)
-                  (dbus-service (list avahi))
+                  (dbus-service)
                   (tor-service)
 
                   %base-services))

build-aux/hydra/gnu-system.scm

@@ -221,10 +221,11 @@ valid."
 
   (define (cross-jobs system)
     (define (from-32-to-64? target)
-      ;; Return true if SYSTEM is 32-bit and TARGET is 64-bit.
-      ;; This hacks prevents known-to-fail cross-builds from i686-linux to
+      ;; Return true if SYSTEM is 32-bit and TARGET is 64-bit.  This hack
+      ;; prevents known-to-fail cross-builds from i686-linux or armhf-linux to
       ;; mips64el-linux-gnuabi64.
-      (and (string-prefix? "i686-" system)
+      (and (or (string-prefix? "i686-" system)
+               (string-prefix? "armhf-" system))
            (string-suffix? "64" target)))
 
     (define (same? target)

build-aux/hydra/guix.scm

@@ -48,6 +48,7 @@
              (gnu packages version-control)
              (gnu packages package-management)
              (gnu packages graphviz)
+             (gnu packages man)
              (srfi srfi-1)
              (srfi srfi-26)
              (ice-9 match))
@@ -71,7 +72,12 @@
 (define (tarball-package checkout)
   "Return a package that does `make distcheck' from CHECKOUT, a directory
 containing a Git checkout of Guix."
-  (dist-package guix checkout))
+  (dist-package (package
+                  (inherit guix)
+                  (native-inputs `(("graphviz" ,graphviz)
+                                   ("help2man" ,help2man)
+                                   ,@(package-native-inputs guix))))
+                checkout))
 
 (define (hydra-jobs store arguments)
   "Return Hydra jobs."

config-daemon.ac

@@ -51,7 +51,7 @@ if test "x$guix_build_daemon" = "xyes"; then
     no)
       LIBGCRYPT_LIBS="-lgcrypt"
       ;;
-   *)
+    *)
       LIBGCRYPT_LIBS="-L$LIBGCRYPT_LIBDIR -lgcrypt"
       ;;
   esac

configure.ac

@@ -2,7 +2,7 @@
 # Process this file with autoconf to produce a configure script.
 
 AC_PREREQ(2.68)
-AC_INIT([GNU Guix], [0.8.3], [bug-guix@gnu.org], [guix],
+AC_INIT([GNU Guix], [0.9.0], [bug-guix@gnu.org], [guix],
   [http://www.gnu.org/software/guix/])
 AC_CONFIG_AUX_DIR([build-aux])
 
@@ -85,6 +85,11 @@ dnl Check whether (srfi srfi-37) works, and provide our own if it doesn't.
 GUIX_CHECK_SRFI_37
 AM_CONDITIONAL([INSTALL_SRFI_37], [test "x$ac_cv_guix_srfi_37_broken" = xyes])
 
+dnl Check whether (guix build syscalls) can be built.
+GUIX_CHECK_LIBC_MOUNT
+AM_CONDITIONAL([BUILD_SYSCALLS_MODULE],
+  [test "x$guix_cv_libc_has_mount" = "xyes"])
+
 AC_ARG_WITH([nix-prefix],
   [AS_HELP_STRING([--with-nix-prefix=DIR],
     [search for Nix in DIR (for testing purposes and '--disable-daemon' builds)])],
@@ -127,23 +132,21 @@ else
    AC_MSG_RESULT([not found])
 fi
 
+LIBGCRYPT="libgcrypt"
+LIBGCRYPT_LIBDIR="no"
+LIBGCRYPT_PREFIX="no"
+
 AC_ARG_WITH([libgcrypt-prefix],
   [AS_HELP_STRING([--with-libgcrypt-prefix=DIR], [search for GNU libgcrypt in DIR])],
   [case "$withval" in
     yes|no)
-      LIBGCRYPT="libgcrypt"
-      LIBGCRYPT_PREFIX="no"
-      LIBGCRYPT_LIBDIR="no"
       ;;
     *)
       LIBGCRYPT="$withval/lib/libgcrypt"
       LIBGCRYPT_PREFIX="$withval"
       LIBGCRYPT_LIBDIR="$withval/lib"
       ;;
-   esac],
-  [LIBGCRYPT="libgcrypt"
-   LIBGCRYPT_PREFIX="no"
-   LIBGCRYPT_LIBDIR="no"])
+   esac])
 
 AC_ARG_WITH([libgcrypt-libdir],
   [AS_HELP_STRING([--with-libgcrypt-libdir=DIR],
@@ -157,13 +160,21 @@ AC_ARG_WITH([libgcrypt-libdir],
       LIBGCRYPT="$withval/libgcrypt"
       LIBGCRYPT_LIBDIR="$withval"
       ;;
-   esac],
-  [if test "x$LIBGCRYPT" = x; then
-      LIBGCRYPT="libgcrypt"
-   fi
-   if test "x$LIBGCRYPT_LIBDIR" = x; then
+   esac])
+
+dnl If none of the --with-libgcrypt-* options was used, try to determine the
+dnl absolute file name of libgcrypt.so.
+case "x$LIBGCRYPT_PREFIX$LIBGCRYPT_LIBDIR" in
+  xnono)
+    GUIX_LIBGCRYPT_LIBDIR([LIBGCRYPT_LIBDIR])
+    if test "x$LIBGCRYPT_LIBDIR" != x; then
+      LIBGCRYPT="$LIBGCRYPT_LIBDIR/libgcrypt"
+    else
+      dnl 'config-daemon.ac' expects "no" in this case.
       LIBGCRYPT_LIBDIR="no"
-   fi])
+    fi
+    ;;
+esac
 
 dnl Library name suitable for `dynamic-link'.
 AC_MSG_CHECKING([for libgcrypt shared library name])
@@ -195,13 +206,13 @@ AC_CONFIG_FILES([pre-inst-env], [chmod +x pre-inst-env])
 AC_CONFIG_FILES([test-env],     [chmod +x test-env])
 
 dnl Emacs interface.
+AC_PATH_PROG([DOT_USER_PROGRAM], [dot], [dot])
 AM_PATH_LISPDIR
 AM_CONDITIONAL([HAVE_EMACS], [test "x$EMACS" != "xno"])
 
 emacsuidir="${guilemoduledir}/guix/emacs"
 AC_SUBST([emacsuidir])
-AC_CONFIG_FILES([emacs/guix-init.el
-                 emacs/guix-profiles.el
+AC_CONFIG_FILES([emacs/guix-config.el
                  emacs/guix-helper.scm])
 
 AC_OUTPUT

doc.am

@@ -18,15 +18,27 @@
 # along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 info_TEXINFOS = doc/guix.texi
+
+DOT_FILES =					\
+  doc/images/bootstrap-graph.dot		\
+  doc/images/coreutils-graph.dot		\
+  doc/images/coreutils-bag-graph.dot		\
+  doc/images/service-graph.dot			\
+  doc/images/dmd-graph.dot
+
+DOT_VECTOR_GRAPHICS =				\
+  $(DOT_FILES:%.dot=%.eps)			\
+  $(DOT_FILES:%.dot=%.pdf)
+
 EXTRA_DIST +=					\
   doc/contributing.texi				\
   doc/emacs.texi				\
   doc/fdl-1.3.texi				\
-  doc/images/bootstrap-graph.dot		\
-  doc/images/bootstrap-graph.eps		\
-  doc/images/bootstrap-graph.pdf		\
+  $(DOT_FILES)					\
+  $(DOT_VECTOR_GRAPHICS)			\
   doc/images/coreutils-size-map.eps		\
-  doc/environment-gdb.scm
+  doc/environment-gdb.scm			\
+  doc/package-hello.scm
 
 OS_CONFIG_EXAMPLES_TEXI =			\
   doc/os-config-bare-bones.texi			\
@@ -43,7 +55,7 @@ doc/os-config-%.texi: gnu/system/examples/%.tmpl
 
 infoimagedir = $(infodir)/images
 dist_infoimage_DATA =				\
-  doc/images/bootstrap-graph.png		\
+  $(DOT_FILES:%.dot=%.png)			\
   doc/images/coreutils-size-map.png
 
 # Try hard to obtain an image size and aspect that's reasonable for inclusion
@@ -71,9 +83,9 @@ DOT_OPTIONS =					\
 # We cannot add new dependencies to `doc/guix.pdf' & co. (info "(automake)
 # Extending").  Using the `-local' rules is imperfect, because they may be
 # triggered after the main rule.  Oh, well.
-pdf-local: $(top_srcdir)/doc/images/bootstrap-graph.pdf
-info-local: $(top_srcdir)/doc/images/bootstrap-graph.png
-ps-local: $(top_srcdir)/doc/images/bootstrap-graph.eps		\
+pdf-local: $(DOT_FILES=%.dot=$(top_srcdir)/%.pdf)
+info-local: $(DOT_FILES=%.dot=$(top_srcdir)/%.png)
+ps-local: $(DOT_FILES=%.dot=$(top_srcdir)/%.eps)		\
 	  $(top_srcdir)/doc/images/coreutils-size-map.eps
 dvi-local: ps-local
 
@@ -101,6 +113,7 @@ endef
 SUBCOMMANDS :=					\
   archive					\
   build						\
+  challenge					\
   download					\
   edit						\
   environment					\

doc/contributing.texi

@@ -27,6 +27,7 @@ the installation instructions (@pxref{Requirements}).
 @item @url{http://gnu.org/software/autoconf/, GNU Autoconf};
 @item @url{http://gnu.org/software/automake/, GNU Automake};
 @item @url{http://gnu.org/software/gettext/, GNU Gettext};
+@item @url{http://gnu.org/software/texinfo/, GNU Texinfo};
 @item @url{http://www.graphviz.org/, Graphviz};
 @item @url{http://www.gnu.org/software/help2man/, GNU Help2man (optional)}.
 @end itemize
@@ -86,11 +87,40 @@ Similarly, for a Guile session using the Guix modules:
 
 @example
 $ ./pre-inst-env guile -c '(use-modules (guix utils)) (pk (%current-system))'
+
+;;; ("x86_64-linux")
+@end example
+
+@noindent
+@cindex REPL
+@cindex read-eval-print loop
+@dots{} and for a REPL (@pxref{Using Guile Interactively,,, guile, Guile
+Reference Manual}):
+
+@example
+$ ./pre-inst-env guile
+scheme@@(guile-user)> ,use(guix)
+scheme@@(guile-user)> ,use(gnu)
+scheme@@(guile-user)> (define snakes
+                       (fold-packages
+                         (lambda (package lst)
+                           (if (string-prefix? "python"
+                                               (package-name package))
+                               (cons package lst)
+                               lst))
+                         '()))
+scheme@@(guile-user)> (length snakes)
+$1 = 361
 @end example
 
 The @command{pre-inst-env} script sets up all the environment variables
 necessary to support this, including @env{PATH} and @env{GUILE_LOAD_PATH}.
 
+Note that @command{./pre-inst-env guix pull} does @emph{not} upgrade the
+local source tree; it simply updates the @file{~/.config/guix/latest}
+symlink (@pxref{Invoking guix pull}).  Run @command{git pull} instead if
+you want to upgrade your local source tree.
+
 
 @node The Perfect Setup
 @section The Perfect Setup
@@ -121,6 +151,9 @@ facilities to directly operate on the syntax tree, such as raising an
 s-expression or wrapping it, swallowing or rejecting the following
 s-expression, etc.
 
+GNU Guix also comes with a minor mode that provides some additional
+functionality for Scheme buffers (@pxref{Emacs Development}).
+
 
 @node Coding Style
 @section Coding Style
@@ -206,6 +239,10 @@ Before submitting a patch that adds or modifies a package definition,
 please run through this check list:
 
 @enumerate
+@item
+Take some time to provide an adequate synopsis and description for the
+package.  @xref{Synopses and Descriptions}, for some guidelines.
+
 @item
 Run @code{guix lint @var{package}}, where @var{package} is the
 name of the new or modified package, and fix any errors it reports
@@ -227,6 +264,17 @@ For important changes, check that dependent package (if applicable) are
 not affected by the change; @code{guix refresh --list-dependent
 @var{package}} will help you do that (@pxref{Invoking guix refresh}).
 
+@item
+Check whether the package's build process is deterministic.  This
+typically means checking whether an independent build of the package
+yields the exact same result that you obtained, bit for bit.
+
+A simple way to do that is with @command{guix challenge}
+(@pxref{Invoking guix challenge}).  You may run it once the package has
+been committed and built by @code{hydra.gnu.org} to check whether it
+obtains the same result as you did.  Better yet: Find another machine
+that can build it and run @command{guix publish}.
+
 @end enumerate
 
 When posting a patch to the mailing list, use @samp{[PATCH] @dots{}} as a

doc/emacs.texi

@@ -1,29 +1,24 @@
 @node Emacs Interface
-@section Emacs Interface
+@chapter Emacs Interface
 
 @cindex Emacs
-GNU Guix comes with a visual user interface for GNU@tie{}Emacs, known
-as ``guix.el''.  It can be used for routine package management tasks,
-pretty much like the @command{guix package} command (@pxref{Invoking
-guix package}).  Specifically, ``guix.el'' makes it easy to:
-
-@itemize
-@item browse and display packages and generations;
-@item search, install, upgrade and remove packages;
-@item display packages from previous generations;
-@item do some other useful things.
-@end itemize
+GNU Guix comes with several useful modules (known as ``guix.el'') for
+GNU@tie{}Emacs which are intended to make an Emacs user interaction with
+Guix convenient and fun.
 
 @menu
 * Initial Setup: Emacs Initial Setup.	Preparing @file{~/.emacs}.
-* Usage: Emacs Usage.			Using the interface.
-* Configuration: Emacs Configuration.	Configuring the interface.
+* Package Management: Emacs Package Management.	Managing packages and generations.
+* Popup Interface: Emacs Popup Interface.	Magit-like interface for guix commands.
 * Prettify Mode: Emacs Prettify.	Abbreviating @file{/gnu/store/@dots{}} file names.
-* Completions: Emacs Completions.       Completing @command{guix} shell command.
+* Build Log Mode: Emacs Build Log.	Highlighting Guix build logs.
+* Completions: Emacs Completions.	Completing @command{guix} shell command.
+* Development: Emacs Development.	Tools for Guix developers.
 @end menu
 
+
 @node Emacs Initial Setup
-@subsection Initial Setup
+@section Initial Setup
 
 On the Guix System Distribution (@pxref{GNU Distribution}), ``guix.el''
 is ready to use, provided Guix is installed system-wide, which is the
@@ -43,6 +38,12 @@ later;
 @uref{http://nongnu.org/geiser/, Geiser}, version 0.3 or later: it is
 used for interacting with the Guile process.
 
+@item
+@uref{https://github.com/magit/magit/, magit-popup library}.  You
+already have this library if you use Magit 2.1.0 or later.  This library
+is an optional dependency---it is required only for @kbd{M-x@tie{}guix}
+command (@pxref{Emacs Popup Interface}).
+
 @end itemize
 
 When it is done ``guix.el'' may be configured by requiring a special
@@ -105,22 +106,32 @@ emacs, The GNU Emacs Manual}).
 You can activate Emacs packages installed in your profile whenever you
 want using @kbd{M-x@tie{}guix-emacs-load-autoloads}.
 
-@node Emacs Usage
-@subsection Usage
+
+@node Emacs Package Management
+@section Package Management
 
 Once ``guix.el'' has been successfully configured, you should be able to
-use commands for displaying packages and generations.  This information
-can be displayed in a ``list'' or ``info'' buffer.
+use a visual interface for routine package management tasks, pretty much
+like the @command{guix package} command (@pxref{Invoking guix package}).
+Specifically, it makes it easy to:
+
+@itemize
+@item browse and display packages and generations;
+@item search, install, upgrade and remove packages;
+@item display packages from previous generations;
+@item do some other useful things.
+@end itemize
 
 @menu
 * Commands: Emacs Commands.			@kbd{M-x guix-@dots{}}
 * General information: Emacs General info.	Common for both interfaces.
 * ``List'' buffer: Emacs List buffer.		List-like interface.
 * ``Info'' buffer: Emacs Info buffer.		Help-like interface.
+* Configuration: Emacs Configuration.		Configuring the interface.
 @end menu
 
 @node Emacs Commands
-@subsubsection Commands
+@subsection Commands
 
 All commands for displaying packages and generations use the current
 profile, which can be changed with
@@ -191,7 +202,7 @@ Once @command{guix pull} has succeeded, the Guix REPL is restared.  This
 allows you to keep using the Emacs interface with the updated Guix.
 
 @node Emacs General info
-@subsubsection General information
+@subsection General information
 
 The following keys are available for both ``list'' and ``info'' types of
 buffers:
@@ -216,6 +227,8 @@ prefix argument is used.  This has the same meaning as @code{--manifest}
 option (@pxref{Invoking guix package}).
 
 @item C-c C-z
+@cindex REPL
+@cindex read-eval-print loop
 Go to the Guix REPL (@pxref{The REPL,,, geiser, Geiser User Manual}).
 
 @item h
@@ -235,7 +248,7 @@ was restarted, you may want to revert ``list'' buffer (by pressing
 @kbd{g}).
 
 @node Emacs List buffer
-@subsubsection ``List'' buffer
+@subsection ``List'' buffer
 
 An interface of a ``list'' buffer is similar to the interface provided
 by ``package.el'' (@pxref{Package Menu,,, emacs, The GNU Emacs Manual}).
@@ -310,7 +323,7 @@ with another marked generation.
 @end table
 
 @node Emacs Info buffer
-@subsubsection ``Info'' buffer
+@subsection ``Info'' buffer
 
 The interface of an ``info'' buffer is similar to the interface of
 @code{help-mode} (@pxref{Help Mode,,, emacs, The GNU Emacs Manual}).
@@ -484,12 +497,92 @@ Various settings for ``info'' buffers.
 @end table
 
 
-@node Emacs Prettify
-@subsection Guix Prettify Mode
+@node Emacs Popup Interface
+@section Popup Interface
 
-Along with ``guix.el'', GNU@tie{}Guix comes with ``guix-prettify.el''.
-It provides a minor mode for abbreviating store file names by replacing
-hash sequences of symbols with ``@dots{}'':
+If you ever used Magit, you know what ``popup interface'' is
+(@pxref{Top,,, magit-popup, Magit-Popup User Manual}).  Even if you are
+not acquainted with Magit, there should be no worries as it is very
+intuitive.
+
+So @kbd{M-x@tie{}guix} command provides a top-level popup interface for
+all available guix commands.  When you select an option, you'll be
+prompted for a value in the minibuffer.  Many values have completions,
+so don't hesitate to press @key{TAB} key.  Multiple values (for example,
+packages or lint checkers) should be separated by commas.
+
+After specifying all options and switches for a command, you may choose
+one of the available actions.  The following default actions are
+available for all commands:
+
+@itemize
+
+@item
+Run the command in the Guix REPL.  It is faster than running
+@code{guix@tie{}@dots{}} command directly in shell, as there is no
+need to run another guile process and to load required modules there.
+
+@item
+Run the command in a shell buffer.  You can set
+@code{guix-run-in-shell-function} variable to fine tune the shell buffer
+you want to use.
+
+@item
+Add the command line to the kill ring (@pxref{Kill Ring,,, emacs, The
+GNU Emacs Manual}).
+
+@end itemize
+
+Several commands (@command{guix graph}, @command{guix system dmd-graph}
+and @command{guix system extension-graph}) also have a ``View graph''
+action, which allows you to view a generated graph using @command{dot}
+command (specified by @code{guix-dot-program} variable).  By default a
+PNG file will be saved in @file{/tmp} directory and will be opened
+directly in Emacs.  This behavior may be changed with the following
+variables:
+
+@table @code
+
+@item guix-find-file-function
+Function used to open a generated graph.  If you want to open a graph in
+an external program, you can do it by modifying this variable---for
+example, you can use a functionality provided by the Org Mode
+(@pxref{Top,,, org, The Org Manual}):
+
+@example
+(setq guix-find-file-function 'org-open-file)
+(add-to-list 'org-file-apps '("\\.png\\'" . "sxiv %s"))
+@end example
+
+@item guix-dot-default-arguments
+Command line arguments to run @command{dot} command.  If you change an
+output format (for example, into @code{-Tpdf}), you also need to change
+the next variable.
+
+@item guix-dot-file-name-function
+Function used to define a name of the generated graph file.  Default
+name is @file{/tmp/guix-emacs-graph-XXXXXX.png}.
+
+@end table
+
+So, for example, if you want to generate and open a PDF file in your
+Emacs, you may change the settings like this:
+
+@example
+(defun my-guix-pdf-graph ()
+  "/tmp/my-current-guix-graph.pdf")
+
+(setq guix-dot-default-arguments '("-Tpdf")
+      guix-dot-file-name-function 'my-guix-pdf-graph)
+@end example
+
+
+@node Emacs Prettify
+@section Guix Prettify Mode
+
+GNU@tie{}Guix also comes with ``guix-prettify.el''.  It provides a minor
+mode for abbreviating store file names by replacing hash sequences of
+symbols with ``@dots{}'':
 
 @example
 /gnu/store/72f54nfp6g1hz873w8z3gfcah0h4nl9p-foo-0.1
@@ -525,8 +618,43 @@ mode hooks (@pxref{Hooks,,, emacs, The GNU Emacs Manual}), for example:
 @end example
 
 
+@node Emacs Build Log
+@section Build Log Mode
+
+GNU@tie{}Guix provides major and minor modes for highlighting build
+logs.  So when you have a file with a package build output---for
+example, a file returned by @command{guix build --log-file @dots{}}
+command (@pxref{Invoking guix build}), you may call @kbd{M-x
+guix-build-log-mode} command in the buffer with this file.  This major
+mode highlights some lines specific to build output and provides the
+following key bindings:
+
+@table @kbd
+
+@item M-n
+Move to the next build phase.
+
+@item M-p
+Move to the previous build phase.
+
+@item @key{TAB}
+Toggle (show/hide) the body of the current build phase.
+
+@item S-@key{TAB}
+Toggle (show/hide) the bodies of all build phases.
+
+@end table
+
+There is also @kbd{M-x guix-build-log-minor-mode} which also provides
+the same highlighting and the same key bindings as the major mode, but
+prefixed with @kbd{C-c}.  By default, this minor mode is enabled in
+shell buffers (@pxref{Interactive Shell,,, emacs, The GNU Emacs
+Manual}).  If you don't like it, set
+@code{guix-build-log-minor-mode-activate} to nil.
+
+
 @node Emacs Completions
-@subsection Shell Completions
+@section Shell Completions
 
 Another feature that becomes available after configuring Emacs interface
 (@pxref{Emacs Initial Setup}) is completing of @command{guix}
@@ -554,3 +682,59 @@ something:
 @item @code{guix lint --checkers=synopsis,des}@key{TAB}
 
 @end itemize
+
+
+@node Emacs Development
+@section Development
+
+By default, when you open a Scheme file, @code{guix-devel-mode} will be
+activated (if you don't want it, set @code{guix-devel-activate-mode} to
+nil).  This minor mode provides the following key bindings:
+
+@table @kbd
+
+@item C-c . k
+Copy the name of the current Guile module into kill ring
+(@code{guix-devel-copy-module-as-kill}).
+
+@item C-c . u
+Use the current Guile module.  Often after opening a Scheme file, you
+want to use a module it defines, so you switch to the Geiser REPL and
+write @code{,use (some module)} there.  You may just use this command
+instead (@code{guix-devel-use-module}).
+
+@item C-c . b
+Build a package defined by the current variable definition.  The
+building process is run in the current Geiser REPL.  If you modified the
+current package definition, don't forget to reevaluate it before calling
+this command---for example, with @kbd{C-M-x} (@pxref{To eval or not to
+eval,,, geiser, Geiser User Manual})
+(@code{guix-devel-build-package-definition}).
+
+@item C-c . s
+Build a source derivation of the package defined by the current variable
+definition.  This command has the same meaning as @code{guix build -S}
+shell command (@pxref{Invoking guix build})
+(@code{guix-devel-build-package-source}).
+
+@item C-c . l
+Lint (check) a package defined by the current variable definition
+(@pxref{Invoking guix lint}) (@code{guix-devel-lint-package}).
+
+@end table
+
+Unluckily, there is a limitation related to long-running REPL commands.
+When there is a running process in a Geiser REPL, you are not supposed
+to evaluate anything in a scheme buffer, because this will ``freeze''
+the REPL: it will stop producing any output (however, the evaluating
+process will continue---you will just not see any progress anymore).  Be
+aware: even moving the point in a scheme buffer may ``break'' the REPL
+if Autodoc (@pxref{Autodoc and friends,,, geiser, Geiser User Manual})
+is enabled (which is the default).
+
+So you have to postpone editing your scheme buffers until the running
+evaluation will be finished in the REPL.
+
+Alternatively, to avoid this limitation, you may just run another Geiser
+REPL, and while something is being evaluated in the previous REPL, you
+can continue editing a scheme file with the help of the current one.

doc/images/coreutils-bag-graph.dot

@@ -0,0 +1,215 @@
+digraph "Guix bag-emerged" {
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" [label = "coreutils-8.24", shape = box, fontname = Helvetica];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/0pr679inn5xj91z4d63scc7vgfji9vpp-tar-1.28.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/p3szkb87bp9fxhn715g88skry8g3jgkq-gzip-1.6.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/i398qn04cwvnzph7a0cckxqr9q0k3lyr-bzip2-1.0.6.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/wvnnsn89magnvn39zm3fv245s9m7yn5f-xz-5.0.4.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/sag0sx1zycnwixwfdrxwj1i9g2phxrh4-file-5.22.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/p61bsw6093x3wfg5vz3172wl9bzrlc3w-diffutils-3.3.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/rzsyx70vnfb8cm40r0b591vyvww2i5y6-patch-2.7.5.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/mc5fgclyr0v26242hmg30srv9ij27wyv-sed-4.2.2.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/ig9nr2f5hvr88br028r9nsdg4xpmmybg-findutils-4.4.2.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/jls1kj3pvqjpbmm7c09fhszfd3m61zif-gawk-4.1.3.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/vvlh6szjxr5iy192fsv9p4dwf39nhapf-grep-2.21.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/mysb2grsl1wc931xm08adncnqjwvdds7-coreutils-8.24.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/n0n20i1brmhmjvw9lx33f2l3dmzx873n-make-4.1.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/64cizlhq38x99dvjvza6c5ha226a9bf5-bash-4.3.39.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/mbshnjz590h3l1c3y2rxzqvn45bhx32b-ld-wrapper-0.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/hf62yhvyrr1rm5y8mq5afih12s9jasic-binutils-2.25.1.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/8mff0w2203h6m5s495knxg09is3qj15f-gcc-4.9.3.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/2pspbpclj4yq5dqd71fnqwa69s8xxryf-glibc-2.22.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/nflynk1n90yh41yfi91raczynka2mf86-glibc-utf8-locales-2.22.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" [color = red];
+  "/gnu/store/xpgn2qn54c323liliyqj6q11b5xnb1db-coreutils-8.24.drv" -> "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" [label = "perl-5.16.1", shape = box, fontname = Helvetica];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/0pr679inn5xj91z4d63scc7vgfji9vpp-tar-1.28.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/p3szkb87bp9fxhn715g88skry8g3jgkq-gzip-1.6.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/i398qn04cwvnzph7a0cckxqr9q0k3lyr-bzip2-1.0.6.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/wvnnsn89magnvn39zm3fv245s9m7yn5f-xz-5.0.4.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/sag0sx1zycnwixwfdrxwj1i9g2phxrh4-file-5.22.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/p61bsw6093x3wfg5vz3172wl9bzrlc3w-diffutils-3.3.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/rzsyx70vnfb8cm40r0b591vyvww2i5y6-patch-2.7.5.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/mc5fgclyr0v26242hmg30srv9ij27wyv-sed-4.2.2.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/ig9nr2f5hvr88br028r9nsdg4xpmmybg-findutils-4.4.2.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/jls1kj3pvqjpbmm7c09fhszfd3m61zif-gawk-4.1.3.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/vvlh6szjxr5iy192fsv9p4dwf39nhapf-grep-2.21.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/mysb2grsl1wc931xm08adncnqjwvdds7-coreutils-8.24.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/n0n20i1brmhmjvw9lx33f2l3dmzx873n-make-4.1.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/64cizlhq38x99dvjvza6c5ha226a9bf5-bash-4.3.39.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/mbshnjz590h3l1c3y2rxzqvn45bhx32b-ld-wrapper-0.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/hf62yhvyrr1rm5y8mq5afih12s9jasic-binutils-2.25.1.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/8mff0w2203h6m5s495knxg09is3qj15f-gcc-4.9.3.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/2pspbpclj4yq5dqd71fnqwa69s8xxryf-glibc-2.22.drv" [color = red];
+  "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" -> "/gnu/store/nflynk1n90yh41yfi91raczynka2mf86-glibc-utf8-locales-2.22.drv" [color = red];
+  "/gnu/store/0pr679inn5xj91z4d63scc7vgfji9vpp-tar-1.28.drv" [label = "tar-1.28", shape = box, fontname = Helvetica];
+  "/gnu/store/p3szkb87bp9fxhn715g88skry8g3jgkq-gzip-1.6.drv" [label = "gzip-1.6", shape = box, fontname = Helvetica];
+  "/gnu/store/i398qn04cwvnzph7a0cckxqr9q0k3lyr-bzip2-1.0.6.drv" [label = "bzip2-1.0.6", shape = box, fontname = Helvetica];
+  "/gnu/store/wvnnsn89magnvn39zm3fv245s9m7yn5f-xz-5.0.4.drv" [label = "xz-5.0.4", shape = box, fontname = Helvetica];
+  "/gnu/store/sag0sx1zycnwixwfdrxwj1i9g2phxrh4-file-5.22.drv" [label = "file-5.22", shape = box, fontname = Helvetica];
+  "/gnu/store/p61bsw6093x3wfg5vz3172wl9bzrlc3w-diffutils-3.3.drv" [label = "diffutils-3.3", shape = box, fontname = Helvetica];
+  "/gnu/store/rzsyx70vnfb8cm40r0b591vyvww2i5y6-patch-2.7.5.drv" [label = "patch-2.7.5", shape = box, fontname = Helvetica];
+  "/gnu/store/mc5fgclyr0v26242hmg30srv9ij27wyv-sed-4.2.2.drv" [label = "sed-4.2.2", shape = box, fontname = Helvetica];
+  "/gnu/store/ig9nr2f5hvr88br028r9nsdg4xpmmybg-findutils-4.4.2.drv" [label = "findutils-4.4.2", shape = box, fontname = Helvetica];
+  "/gnu/store/jls1kj3pvqjpbmm7c09fhszfd3m61zif-gawk-4.1.3.drv" [label = "gawk-4.1.3", shape = box, fontname = Helvetica];
+  "/gnu/store/vvlh6szjxr5iy192fsv9p4dwf39nhapf-grep-2.21.drv" [label = "grep-2.21", shape = box, fontname = Helvetica];
+  "/gnu/store/mysb2grsl1wc931xm08adncnqjwvdds7-coreutils-8.24.drv" [label = "coreutils-8.24", shape = box, fontname = Helvetica];
+  "/gnu/store/n0n20i1brmhmjvw9lx33f2l3dmzx873n-make-4.1.drv" [label = "make-4.1", shape = box, fontname = Helvetica];
+  "/gnu/store/64cizlhq38x99dvjvza6c5ha226a9bf5-bash-4.3.39.drv" [label = "bash-4.3.39", shape = box, fontname = Helvetica];
+  "/gnu/store/mbshnjz590h3l1c3y2rxzqvn45bhx32b-ld-wrapper-0.drv" [label = "ld-wrapper-0", shape = box, fontname = Helvetica];
+  "/gnu/store/hf62yhvyrr1rm5y8mq5afih12s9jasic-binutils-2.25.1.drv" [label = "binutils-2.25.1", shape = box, fontname = Helvetica];
+  "/gnu/store/8mff0w2203h6m5s495knxg09is3qj15f-gcc-4.9.3.drv" [label = "gcc-4.9.3", shape = box, fontname = Helvetica];
+  "/gnu/store/2pspbpclj4yq5dqd71fnqwa69s8xxryf-glibc-2.22.drv" [label = "glibc-2.22", shape = box, fontname = Helvetica];
+  "/gnu/store/nflynk1n90yh41yfi91raczynka2mf86-glibc-utf8-locales-2.22.drv" [label = "glibc-utf8-locales-2.22", shape = box, fontname = Helvetica];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" [label = "acl-2.2.52", shape = box, fontname = Helvetica];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/0pr679inn5xj91z4d63scc7vgfji9vpp-tar-1.28.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/p3szkb87bp9fxhn715g88skry8g3jgkq-gzip-1.6.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/i398qn04cwvnzph7a0cckxqr9q0k3lyr-bzip2-1.0.6.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/wvnnsn89magnvn39zm3fv245s9m7yn5f-xz-5.0.4.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/sag0sx1zycnwixwfdrxwj1i9g2phxrh4-file-5.22.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/p61bsw6093x3wfg5vz3172wl9bzrlc3w-diffutils-3.3.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/rzsyx70vnfb8cm40r0b591vyvww2i5y6-patch-2.7.5.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/mc5fgclyr0v26242hmg30srv9ij27wyv-sed-4.2.2.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/ig9nr2f5hvr88br028r9nsdg4xpmmybg-findutils-4.4.2.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/jls1kj3pvqjpbmm7c09fhszfd3m61zif-gawk-4.1.3.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/vvlh6szjxr5iy192fsv9p4dwf39nhapf-grep-2.21.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/mysb2grsl1wc931xm08adncnqjwvdds7-coreutils-8.24.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/n0n20i1brmhmjvw9lx33f2l3dmzx873n-make-4.1.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/64cizlhq38x99dvjvza6c5ha226a9bf5-bash-4.3.39.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/mbshnjz590h3l1c3y2rxzqvn45bhx32b-ld-wrapper-0.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/hf62yhvyrr1rm5y8mq5afih12s9jasic-binutils-2.25.1.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/8mff0w2203h6m5s495knxg09is3qj15f-gcc-4.9.3.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/2pspbpclj4yq5dqd71fnqwa69s8xxryf-glibc-2.22.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/nflynk1n90yh41yfi91raczynka2mf86-glibc-utf8-locales-2.22.drv" [color = red];
+  "/gnu/store/6i8brik0khb2s5r6ih7h6g22l9s2xmph-acl-2.2.52.drv" -> "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" [label = "gettext-0.19.6", shape = box, fontname = Helvetica];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/0pr679inn5xj91z4d63scc7vgfji9vpp-tar-1.28.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/p3szkb87bp9fxhn715g88skry8g3jgkq-gzip-1.6.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/i398qn04cwvnzph7a0cckxqr9q0k3lyr-bzip2-1.0.6.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/wvnnsn89magnvn39zm3fv245s9m7yn5f-xz-5.0.4.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/sag0sx1zycnwixwfdrxwj1i9g2phxrh4-file-5.22.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/p61bsw6093x3wfg5vz3172wl9bzrlc3w-diffutils-3.3.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/rzsyx70vnfb8cm40r0b591vyvww2i5y6-patch-2.7.5.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/mc5fgclyr0v26242hmg30srv9ij27wyv-sed-4.2.2.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/ig9nr2f5hvr88br028r9nsdg4xpmmybg-findutils-4.4.2.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/jls1kj3pvqjpbmm7c09fhszfd3m61zif-gawk-4.1.3.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/vvlh6szjxr5iy192fsv9p4dwf39nhapf-grep-2.21.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/mysb2grsl1wc931xm08adncnqjwvdds7-coreutils-8.24.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/n0n20i1brmhmjvw9lx33f2l3dmzx873n-make-4.1.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/64cizlhq38x99dvjvza6c5ha226a9bf5-bash-4.3.39.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/mbshnjz590h3l1c3y2rxzqvn45bhx32b-ld-wrapper-0.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/hf62yhvyrr1rm5y8mq5afih12s9jasic-binutils-2.25.1.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/8mff0w2203h6m5s495knxg09is3qj15f-gcc-4.9.3.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/2pspbpclj4yq5dqd71fnqwa69s8xxryf-glibc-2.22.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/nflynk1n90yh41yfi91raczynka2mf86-glibc-utf8-locales-2.22.drv" [color = red];
+  "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" -> "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" [label = "expat-2.1.0", shape = box, fontname = Helvetica];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/0pr679inn5xj91z4d63scc7vgfji9vpp-tar-1.28.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/p3szkb87bp9fxhn715g88skry8g3jgkq-gzip-1.6.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/i398qn04cwvnzph7a0cckxqr9q0k3lyr-bzip2-1.0.6.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/wvnnsn89magnvn39zm3fv245s9m7yn5f-xz-5.0.4.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/sag0sx1zycnwixwfdrxwj1i9g2phxrh4-file-5.22.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/p61bsw6093x3wfg5vz3172wl9bzrlc3w-diffutils-3.3.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/rzsyx70vnfb8cm40r0b591vyvww2i5y6-patch-2.7.5.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/mc5fgclyr0v26242hmg30srv9ij27wyv-sed-4.2.2.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/ig9nr2f5hvr88br028r9nsdg4xpmmybg-findutils-4.4.2.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/jls1kj3pvqjpbmm7c09fhszfd3m61zif-gawk-4.1.3.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/vvlh6szjxr5iy192fsv9p4dwf39nhapf-grep-2.21.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/mysb2grsl1wc931xm08adncnqjwvdds7-coreutils-8.24.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/n0n20i1brmhmjvw9lx33f2l3dmzx873n-make-4.1.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/64cizlhq38x99dvjvza6c5ha226a9bf5-bash-4.3.39.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/mbshnjz590h3l1c3y2rxzqvn45bhx32b-ld-wrapper-0.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/hf62yhvyrr1rm5y8mq5afih12s9jasic-binutils-2.25.1.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/8mff0w2203h6m5s495knxg09is3qj15f-gcc-4.9.3.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/2pspbpclj4yq5dqd71fnqwa69s8xxryf-glibc-2.22.drv" [color = red];
+  "/gnu/store/n3ix2bl79ijv1v1winwf4qj46hlhyrdv-expat-2.1.0.drv" -> "/gnu/store/nflynk1n90yh41yfi91raczynka2mf86-glibc-utf8-locales-2.22.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" [label = "attr-2.4.46", shape = box, fontname = Helvetica];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/a076d7ng0h3ynr1hsiyk4fmh3w1g4cv8-gettext-0.19.6.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/0pr679inn5xj91z4d63scc7vgfji9vpp-tar-1.28.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/p3szkb87bp9fxhn715g88skry8g3jgkq-gzip-1.6.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/i398qn04cwvnzph7a0cckxqr9q0k3lyr-bzip2-1.0.6.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/wvnnsn89magnvn39zm3fv245s9m7yn5f-xz-5.0.4.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/sag0sx1zycnwixwfdrxwj1i9g2phxrh4-file-5.22.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/p61bsw6093x3wfg5vz3172wl9bzrlc3w-diffutils-3.3.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/rzsyx70vnfb8cm40r0b591vyvww2i5y6-patch-2.7.5.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/mc5fgclyr0v26242hmg30srv9ij27wyv-sed-4.2.2.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/ig9nr2f5hvr88br028r9nsdg4xpmmybg-findutils-4.4.2.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/jls1kj3pvqjpbmm7c09fhszfd3m61zif-gawk-4.1.3.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/vvlh6szjxr5iy192fsv9p4dwf39nhapf-grep-2.21.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/mysb2grsl1wc931xm08adncnqjwvdds7-coreutils-8.24.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/n0n20i1brmhmjvw9lx33f2l3dmzx873n-make-4.1.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/64cizlhq38x99dvjvza6c5ha226a9bf5-bash-4.3.39.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/mbshnjz590h3l1c3y2rxzqvn45bhx32b-ld-wrapper-0.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/hf62yhvyrr1rm5y8mq5afih12s9jasic-binutils-2.25.1.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/8mff0w2203h6m5s495knxg09is3qj15f-gcc-4.9.3.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/2pspbpclj4yq5dqd71fnqwa69s8xxryf-glibc-2.22.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/nflynk1n90yh41yfi91raczynka2mf86-glibc-utf8-locales-2.22.drv" [color = red];
+  "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" -> "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" [label = "gmp-6.0.0a", shape = box, fontname = Helvetica];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/0pr679inn5xj91z4d63scc7vgfji9vpp-tar-1.28.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/p3szkb87bp9fxhn715g88skry8g3jgkq-gzip-1.6.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/i398qn04cwvnzph7a0cckxqr9q0k3lyr-bzip2-1.0.6.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/wvnnsn89magnvn39zm3fv245s9m7yn5f-xz-5.0.4.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/sag0sx1zycnwixwfdrxwj1i9g2phxrh4-file-5.22.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/p61bsw6093x3wfg5vz3172wl9bzrlc3w-diffutils-3.3.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/rzsyx70vnfb8cm40r0b591vyvww2i5y6-patch-2.7.5.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/mc5fgclyr0v26242hmg30srv9ij27wyv-sed-4.2.2.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/ig9nr2f5hvr88br028r9nsdg4xpmmybg-findutils-4.4.2.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/jls1kj3pvqjpbmm7c09fhszfd3m61zif-gawk-4.1.3.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/vvlh6szjxr5iy192fsv9p4dwf39nhapf-grep-2.21.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/mysb2grsl1wc931xm08adncnqjwvdds7-coreutils-8.24.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/n0n20i1brmhmjvw9lx33f2l3dmzx873n-make-4.1.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/64cizlhq38x99dvjvza6c5ha226a9bf5-bash-4.3.39.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/mbshnjz590h3l1c3y2rxzqvn45bhx32b-ld-wrapper-0.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/hf62yhvyrr1rm5y8mq5afih12s9jasic-binutils-2.25.1.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/8mff0w2203h6m5s495knxg09is3qj15f-gcc-4.9.3.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/2pspbpclj4yq5dqd71fnqwa69s8xxryf-glibc-2.22.drv" [color = red];
+  "/gnu/store/wmvpskqsw6hgriy0vbmmm6c4wp8rxp2c-gmp-6.0.0a.drv" -> "/gnu/store/nflynk1n90yh41yfi91raczynka2mf86-glibc-utf8-locales-2.22.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" [label = "m4-1.4.17", shape = box, fontname = Helvetica];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/0pr679inn5xj91z4d63scc7vgfji9vpp-tar-1.28.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/p3szkb87bp9fxhn715g88skry8g3jgkq-gzip-1.6.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/i398qn04cwvnzph7a0cckxqr9q0k3lyr-bzip2-1.0.6.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/wvnnsn89magnvn39zm3fv245s9m7yn5f-xz-5.0.4.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/sag0sx1zycnwixwfdrxwj1i9g2phxrh4-file-5.22.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/p61bsw6093x3wfg5vz3172wl9bzrlc3w-diffutils-3.3.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/rzsyx70vnfb8cm40r0b591vyvww2i5y6-patch-2.7.5.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/mc5fgclyr0v26242hmg30srv9ij27wyv-sed-4.2.2.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/ig9nr2f5hvr88br028r9nsdg4xpmmybg-findutils-4.4.2.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/jls1kj3pvqjpbmm7c09fhszfd3m61zif-gawk-4.1.3.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/vvlh6szjxr5iy192fsv9p4dwf39nhapf-grep-2.21.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/mysb2grsl1wc931xm08adncnqjwvdds7-coreutils-8.24.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/n0n20i1brmhmjvw9lx33f2l3dmzx873n-make-4.1.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/64cizlhq38x99dvjvza6c5ha226a9bf5-bash-4.3.39.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/mbshnjz590h3l1c3y2rxzqvn45bhx32b-ld-wrapper-0.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/hf62yhvyrr1rm5y8mq5afih12s9jasic-binutils-2.25.1.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/8mff0w2203h6m5s495knxg09is3qj15f-gcc-4.9.3.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/2pspbpclj4yq5dqd71fnqwa69s8xxryf-glibc-2.22.drv" [color = red];
+  "/gnu/store/1mwk0rc4lfcy3vax50ss8x3qfa304g67-m4-1.4.17.drv" -> "/gnu/store/nflynk1n90yh41yfi91raczynka2mf86-glibc-utf8-locales-2.22.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" [label = "libcap-2.24", shape = box, fontname = Helvetica];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/mi4a8m41ssrp7lv3b8vibw0a7ahv2mmg-perl-5.16.1.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/0pr679inn5xj91z4d63scc7vgfji9vpp-tar-1.28.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/p3szkb87bp9fxhn715g88skry8g3jgkq-gzip-1.6.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/i398qn04cwvnzph7a0cckxqr9q0k3lyr-bzip2-1.0.6.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/wvnnsn89magnvn39zm3fv245s9m7yn5f-xz-5.0.4.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/sag0sx1zycnwixwfdrxwj1i9g2phxrh4-file-5.22.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/p61bsw6093x3wfg5vz3172wl9bzrlc3w-diffutils-3.3.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/rzsyx70vnfb8cm40r0b591vyvww2i5y6-patch-2.7.5.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/mc5fgclyr0v26242hmg30srv9ij27wyv-sed-4.2.2.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/ig9nr2f5hvr88br028r9nsdg4xpmmybg-findutils-4.4.2.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/jls1kj3pvqjpbmm7c09fhszfd3m61zif-gawk-4.1.3.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/vvlh6szjxr5iy192fsv9p4dwf39nhapf-grep-2.21.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/mysb2grsl1wc931xm08adncnqjwvdds7-coreutils-8.24.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/n0n20i1brmhmjvw9lx33f2l3dmzx873n-make-4.1.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/64cizlhq38x99dvjvza6c5ha226a9bf5-bash-4.3.39.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/mbshnjz590h3l1c3y2rxzqvn45bhx32b-ld-wrapper-0.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/hf62yhvyrr1rm5y8mq5afih12s9jasic-binutils-2.25.1.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/8mff0w2203h6m5s495knxg09is3qj15f-gcc-4.9.3.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/2pspbpclj4yq5dqd71fnqwa69s8xxryf-glibc-2.22.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/nflynk1n90yh41yfi91raczynka2mf86-glibc-utf8-locales-2.22.drv" [color = red];
+  "/gnu/store/d7d6k5bhk7gz3pvhxdn2f33jzlxg4c5l-libcap-2.24.drv" -> "/gnu/store/3lq0fkjmjb917asbj9f24vcxxnq3kwai-attr-2.4.46.drv" [color = red];
+
+}

doc/images/coreutils-graph.dot

@@ -0,0 +1,25 @@
+digraph "Guix package" {
+  "70481600" [label = "coreutils-8.24", shape = box, fontname = Helvetica];
+  "70481600" -> "50717824" [color = red];
+  "70481600" -> "57499200" [color = red];
+  "70481600" -> "57496320" [color = red];
+  "70481600" -> "69877504" [color = red];
+  "50717824" [label = "perl-5.16.1", shape = box, fontname = Helvetica];
+  "57499200" [label = "acl-2.2.52", shape = box, fontname = Helvetica];
+  "57499200" -> "70563904" [color = red];
+  "57499200" -> "50717824" [color = red];
+  "57499200" -> "70563520" [color = red];
+  "70563904" [label = "gettext-0.19.6", shape = box, fontname = Helvetica];
+  "70563904" -> "69316352" [color = red];
+  "69316352" [label = "expat-2.1.0", shape = box, fontname = Helvetica];
+  "70563520" [label = "attr-2.4.46", shape = box, fontname = Helvetica];
+  "70563520" -> "70563904" [color = red];
+  "70563520" -> "50717824" [color = red];
+  "57496320" [label = "gmp-6.0.0a", shape = box, fontname = Helvetica];
+  "57496320" -> "57498432" [color = red];
+  "57498432" [label = "m4-1.4.17", shape = box, fontname = Helvetica];
+  "69877504" [label = "libcap-2.24", shape = box, fontname = Helvetica];
+  "69877504" -> "50717824" [color = red];
+  "69877504" -> "70563520" [color = red];
+
+}

doc/images/dmd-graph.dot

@@ -0,0 +1,75 @@
+digraph "Guix dmd-service" {
+  "user-file-systems" [label = "user-file-systems", shape = box, fontname = Helvetica];
+  "user-processes" -> "user-file-systems" [color = red];
+  "user-processes" [label = "user-processes", shape = box, fontname = Helvetica];
+  "nscd" -> "user-processes" [color = red];
+  "guix-daemon" -> "user-processes" [color = red];
+  "syslogd" -> "user-processes" [color = red];
+  "term-tty6" -> "user-processes" [color = red];
+  "term-tty5" -> "user-processes" [color = red];
+  "term-tty4" -> "user-processes" [color = red];
+  "term-tty3" -> "user-processes" [color = red];
+  "term-tty2" -> "user-processes" [color = red];
+  "term-tty1" -> "user-processes" [color = red];
+  "networking" -> "user-processes" [color = red];
+  "nscd" [label = "nscd", shape = box, fontname = Helvetica];
+  "guix-daemon" [label = "guix-daemon", shape = box, fontname = Helvetica];
+  "syslogd" [label = "syslogd", shape = box, fontname = Helvetica];
+  "ssh-daemon" -> "syslogd" [color = red];
+  "ssh-daemon" [label = "ssh-daemon", shape = box, fontname = Helvetica];
+  "term-tty6" [label = "term-tty6", shape = box, fontname = Helvetica];
+  "console-font-tty6" -> "term-tty6" [color = red];
+  "console-font-tty6" [label = "console-font-tty6", shape = box, fontname = Helvetica];
+  "term-tty5" [label = "term-tty5", shape = box, fontname = Helvetica];
+  "console-font-tty5" -> "term-tty5" [color = red];
+  "console-font-tty5" [label = "console-font-tty5", shape = box, fontname = Helvetica];
+  "term-tty4" [label = "term-tty4", shape = box, fontname = Helvetica];
+  "console-font-tty4" -> "term-tty4" [color = red];
+  "console-font-tty4" [label = "console-font-tty4", shape = box, fontname = Helvetica];
+  "term-tty3" [label = "term-tty3", shape = box, fontname = Helvetica];
+  "console-font-tty3" -> "term-tty3" [color = red];
+  "console-font-tty3" [label = "console-font-tty3", shape = box, fontname = Helvetica];
+  "term-tty2" [label = "term-tty2", shape = box, fontname = Helvetica];
+  "console-font-tty2" -> "term-tty2" [color = red];
+  "console-font-tty2" [label = "console-font-tty2", shape = box, fontname = Helvetica];
+  "term-tty1" [label = "term-tty1", shape = box, fontname = Helvetica];
+  "console-font-tty1" -> "term-tty1" [color = red];
+  "console-font-tty1" [label = "console-font-tty1", shape = box, fontname = Helvetica];
+  "networking" [label = "networking", shape = box, fontname = Helvetica];
+  "ssh-daemon" -> "networking" [color = red];
+  "root-file-system" [label = "root-file-system", shape = box, fontname = Helvetica];
+  "file-system-/run/user" -> "root-file-system" [color = red];
+  "file-system-/run/systemd" -> "root-file-system" [color = red];
+  "file-system-/gnu/store" -> "root-file-system" [color = red];
+  "file-system-/dev/shm" -> "root-file-system" [color = red];
+  "file-system-/dev/pts" -> "root-file-system" [color = red];
+  "user-processes" -> "root-file-system" [color = red];
+  "udev" -> "root-file-system" [color = red];
+  "file-system-/run/user" [label = "file-system-/run/user", shape = box, fontname = Helvetica];
+  "user-processes" -> "file-system-/run/user" [color = red];
+  "file-system-/run/systemd" [label = "file-system-/run/systemd", shape = box, fontname = Helvetica];
+  "user-processes" -> "file-system-/run/systemd" [color = red];
+  "file-system-/gnu/store" [label = "file-system-/gnu/store", shape = box, fontname = Helvetica];
+  "user-processes" -> "file-system-/gnu/store" [color = red];
+  "file-system-/dev/shm" [label = "file-system-/dev/shm", shape = box, fontname = Helvetica];
+  "user-processes" -> "file-system-/dev/shm" [color = red];
+  "file-system-/dev/pts" [label = "file-system-/dev/pts", shape = box, fontname = Helvetica];
+  "user-processes" -> "file-system-/dev/pts" [color = red];
+  "udev" [label = "udev", shape = box, fontname = Helvetica];
+  "term-tty6" -> "udev" [color = red];
+  "term-tty5" -> "udev" [color = red];
+  "term-tty4" -> "udev" [color = red];
+  "term-tty3" -> "udev" [color = red];
+  "term-tty2" -> "udev" [color = red];
+  "term-tty1" -> "udev" [color = red];
+  "networking" -> "udev" [color = red];
+  "host-name" [label = "host-name", shape = box, fontname = Helvetica];
+  "term-tty6" -> "host-name" [color = red];
+  "term-tty5" -> "host-name" [color = red];
+  "term-tty4" -> "host-name" [color = red];
+  "term-tty3" -> "host-name" [color = red];
+  "term-tty2" -> "host-name" [color = red];
+  "term-tty1" -> "host-name" [color = red];
+  "loopback" [label = "loopback", shape = box, fontname = Helvetica];
+
+}

doc/images/service-graph.dot

@@ -0,0 +1,40 @@
+digraph "Service Type Dependencies" {
+  dmd [shape = box, fontname = Helvetica];
+  pam [shape = box, fontname = Helvetica];
+  etc [shape = box, fontname = Helvetica];
+  profile [shape = box, fontname = Helvetica];
+  accounts [shape = box, fontname = Helvetica];
+  activation [shape = box, fontname = Helvetica];
+  boot [shape = box, fontname = Helvetica];
+  system [shape = house, fontname = Helvetica];
+  lshd -> dmd;
+  lshd -> pam;
+  udev -> dmd;
+  nscd -> dmd [label = "extends"];
+  "nss-mdns" -> nscd;
+  "kvm-rules" -> udev;
+  colord -> udev;
+  dbus -> dmd;
+  colord -> dbus;
+  upower -> udev;
+  upower -> dbus;
+  polkit -> dbus;
+  polkit -> pam;
+  elogind -> dbus;
+  elogind -> udev;
+  elogind -> polkit [label = "extends"];
+  dmd -> boot;
+  colord -> accounts;
+  accounts -> activation;
+  accounts -> etc;
+  etc -> activation;
+  activation -> boot;
+  pam -> etc;
+  elogind -> pam;
+  guix -> dmd;
+  guix -> activation;
+  guix -> accounts;
+  boot -> system;
+  etc -> system;
+  profile -> system;
+}

doc/package-hello.scm

@@ -0,0 +1,19 @@
+(use-modules (guix)
+             (guix build-system gnu)
+             (guix licenses))
+
+(package
+  (name "hello")
+  (version "2.10")
+  (source (origin
+            (method url-fetch)
+            (uri (string-append "mirror://gnu/hello/hello-" version
+                                ".tar.gz"))
+            (sha256
+             (base32
+              "0ssi1wpaf7plaswqqjwigppsg5fyh99vdlb9kzl7c9lng89ndq1i"))))
+  (build-system gnu-build-system)
+  (synopsis "Hello, GNU world: An example GNU package")
+  (description "Guess what GNU Hello prints!")
+  (home-page "http://www.gnu.org/software/hello/")
+  (license gpl3+))

emacs.am

@@ -1,5 +1,5 @@
 # GNU Guix --- Functional package management for GNU
-# Copyright © 2014 Alex Kost <alezost@gmail.com>
+# Copyright © 2014, 2015 Alex Kost <alezost@gmail.com>
 #
 # This file is part of GNU Guix.
 #
@@ -21,13 +21,24 @@ AUTOLOADS = emacs/guix-autoloads.el
 ELFILES =					\
   emacs/guix-backend.el				\
   emacs/guix-base.el				\
+  emacs/guix-build-log.el			\
+  emacs/guix-command.el				\
+  emacs/guix-devel.el				\
   emacs/guix-emacs.el				\
+  emacs/guix-external.el			\
+  emacs/guix-geiser.el				\
+  emacs/guix-guile.el				\
+  emacs/guix-help-vars.el			\
   emacs/guix-history.el				\
   emacs/guix-info.el				\
+  emacs/guix-init.el				\
   emacs/guix-list.el				\
   emacs/guix-messages.el			\
   emacs/guix-pcomplete.el			\
+  emacs/guix-popup.el				\
   emacs/guix-prettify.el			\
+  emacs/guix-profiles.el			\
+  emacs/guix-read.el				\
   emacs/guix-utils.el				\
   emacs/guix.el
 
@@ -37,9 +48,7 @@ dist_lisp_DATA =				\
   $(ELFILES)					\
   $(AUTOLOADS)
 
-nodist_lisp_DATA =				\
-  emacs/guix-init.el				\
-  emacs/guix-profiles.el
+nodist_lisp_DATA = emacs/guix-config.el
 
 $(AUTOLOADS): $(ELFILES)
 	$(EMACS) --batch --eval						\

emacs/guix-backend.el

@@ -1,6 +1,6 @@
-;;; guix-backend.el --- Communication with Geiser
+;;; guix-backend.el --- Making and using Guix REPL
 
-;; Copyright © 2014 Alex Kost <alezost@gmail.com>
+;; Copyright © 2014, 2015 Alex Kost <alezost@gmail.com>
 
 ;; This file is part of GNU Guix.
 
@@ -19,9 +19,10 @@
 
 ;;; Commentary:
 
-;; This file provides the code for interacting with Guile using Geiser.
+;; This file provides the code for interacting with Guile using Guix REPL
+;; (Geiser REPL with some guix-specific additions).
 
-;; By default (if `guix-use-guile-server' is non-nil) 2 Geiser REPLs are
+;; By default (if `guix-use-guile-server' is non-nil) 2 Guix REPLs are
 ;; started.  The main one (with "guile --listen" process) is used for
 ;; "interacting" with a user - for showing a progress of
 ;; installing/deleting Guix packages.  The second (internal) REPL is
@@ -52,26 +53,19 @@
 ;;; Code:
 
 (require 'geiser-mode)
+(require 'geiser-guile)
+(require 'guix-geiser)
+(require 'guix-config)
+(require 'guix-external)
 (require 'guix-emacs)
 
-(defvar guix-load-path
-  (file-name-directory (or load-file-name
-                           (locate-library "guix")))
+(defvar guix-load-path guix-config-emacs-interface-directory
   "Directory with scheme files for \"guix.el\" package.")
 
 (defvar guix-helper-file
   (expand-file-name "guix-helper.scm" guix-load-path)
   "Auxiliary scheme file for loading.")
 
-(defvar guix-guile-program (or geiser-guile-binary "guile")
-  "Name of the guile executable used for Guix REPL.
-May be either a string (the name of the executable) or a list of
-strings of the form:
-
-  (NAME . ARGS)
-
-Where ARGS is a list of arguments to the guile program.")
-
 
 ;;; REPL
 
@@ -315,46 +309,15 @@ additional internal REPL if it exists."
 (defvar guix-operation-buffer nil
   "Buffer from which the latest Guix operation was performed.")
 
-(defun guix-make-guile-expression (fun &rest args)
-  "Return string containing a guile expression for calling FUN with ARGS."
-  (format "(%S %s)" fun
-          (mapconcat
-           (lambda (arg)
-             (cond
-              ((null arg) "'()")
-              ((or (eq arg t)
-                   ;; An ugly hack to separate 'false' from nil
-                   (equal arg 'f)
-                   (keywordp arg))
-               (concat "#" (prin1-to-string arg t)))
-              ((or (symbolp arg) (listp arg))
-               (concat "'" (prin1-to-string arg)))
-              (t (prin1-to-string arg))))
-           args
-           " ")))
+(defun guix-eval (str)
+  "Evaluate STR with guile expression using Guix REPL.
+See `guix-geiser-eval' for details."
+  (guix-geiser-eval str (guix-get-repl-buffer 'internal)))
 
-(defun guix-eval (str &optional wrap)
-  "Evaluate guile expression STR.
-If WRAP is non-nil, wrap STR into (begin ...) form.
-Return a list of strings with result values of evaluation."
-  (with-current-buffer (guix-get-repl-buffer 'internal)
-    (let* ((wrapped (if wrap (geiser-debug--wrap-region str) str))
-           (code `(:eval (:scm ,wrapped)))
-           (ret (geiser-eval--send/wait code)))
-      (if (geiser-eval--retort-error ret)
-          (error "Error in evaluating guile expression: %s"
-                 (geiser-eval--retort-output ret))
-        (cdr (assq 'result ret))))))
-
-(defun guix-eval-read (str &optional wrap)
-  "Evaluate guile expression STR.
-For the meaning of WRAP, see `guix-eval'.
-Return elisp expression of the first result value of evaluation."
-  ;; Parsing scheme code with elisp `read' is probably not the best idea.
-  (read (replace-regexp-in-string
-         "#f\\|#<unspecified>" "nil"
-         (replace-regexp-in-string
-          "#t" "t" (car (guix-eval str wrap))))))
+(defun guix-eval-read (str)
+  "Evaluate STR with guile expression using Guix REPL.
+See `guix-geiser-eval-read' for details."
+  (guix-geiser-eval-read str (guix-get-repl-buffer 'internal)))
 
 (defun guix-eval-in-repl (str &optional operation-buffer operation-type)
   "Switch to Guix REPL and evaluate STR with guile expression there.
@@ -368,10 +331,7 @@ successful executing of the current operation,
   (setq guix-repl-operation-p t
         guix-repl-operation-type operation-type
         guix-operation-buffer operation-buffer)
-  (let ((repl (guix-get-repl-buffer)))
-    (with-current-buffer repl
-      (geiser-repl--send str))
-    (geiser-repl--switch-to-buffer repl)))
+  (guix-geiser-eval-in-repl str (guix-get-repl-buffer)))
 
 (provide 'guix-backend)
 

emacs/guix-base.el

@@ -1,6 +1,6 @@
 ;;; guix-base.el --- Common definitions   -*- lexical-binding: t -*-
 
-;; Copyright © 2014 Alex Kost <alezost@gmail.com>
+;; Copyright © 2014, 2015 Alex Kost <alezost@gmail.com>
 
 ;; This file is part of GNU Guix.
 
@@ -30,6 +30,7 @@
 (require 'cl-lib)
 (require 'guix-profiles)
 (require 'guix-backend)
+(require 'guix-guile)
 (require 'guix-utils)
 (require 'guix-history)
 (require 'guix-messages)
@@ -89,8 +90,8 @@ Each element of the list has a form:
 
 (defun guix-get-param-title (entry-type param)
   "Return title of an ENTRY-TYPE entry parameter PARAM."
-  (or (guix-get-key-val guix-param-titles
-                        entry-type param)
+  (or (guix-assq-value guix-param-titles
+                       entry-type param)
       (prog1 (symbol-name param)
         (message "Couldn't find title for '%S %S'."
                  entry-type param))))
@@ -102,15 +103,15 @@ Each element of the list has a form:
 
 (defun guix-get-full-name (entry &optional output)
   "Return name specification of the package ENTRY and OUTPUT."
-  (guix-get-name-spec (guix-get-key-val entry 'name)
-                      (guix-get-key-val entry 'version)
+  (guix-get-name-spec (guix-assq-value entry 'name)
+                      (guix-assq-value entry 'version)
                       output))
 
 (defun guix-entry-to-specification (entry)
   "Return name specification by the package or output ENTRY."
-  (guix-get-name-spec (guix-get-key-val entry 'name)
-                      (guix-get-key-val entry 'version)
-                      (guix-get-key-val entry 'output)))
+  (guix-get-name-spec (guix-assq-value entry 'name)
+                      (guix-assq-value entry 'version)
+                      (guix-assq-value entry 'output)))
 
 (defun guix-entries-to-specifications (entries)
   "Return name specifications by the package or output ENTRIES."
@@ -120,13 +121,13 @@ Each element of the list has a form:
 (defun guix-get-installed-outputs (entry)
   "Return list of installed outputs for the package ENTRY."
   (mapcar (lambda (installed-entry)
-            (guix-get-key-val installed-entry 'output))
-          (guix-get-key-val entry 'installed)))
+            (guix-assq-value installed-entry 'output))
+          (guix-assq-value entry 'installed)))
 
 (defun guix-get-entry-by-id (id entries)
   "Return entry from ENTRIES by entry ID."
   (cl-find-if (lambda (entry)
-                (equal id (guix-get-key-val entry 'id)))
+                (equal id (guix-assq-value entry 'id)))
               entries))
 
 (defun guix-get-package-id-and-output-by-output-id (oid)
@@ -172,13 +173,40 @@ If PATH is relative, it is considered to be relative to
       (move-to-column col)
       (recenter 1))))
 
-(defun guix-edit-package (id)
-  "Edit (go to location of) package with ID."
-  (let ((loc (guix-eval-read (guix-make-guile-expression
-                              'package-location-string id))))
-    (if loc
-        (guix-find-location loc)
-      (message "Couldn't find package location."))))
+(defun guix-package-location (id-or-name)
+  "Return location of a package with ID-OR-NAME.
+For the meaning of location, see `guix-find-location'."
+  (guix-eval-read (guix-make-guile-expression
+                   'package-location-string id-or-name)))
+
+
+;;; Receivable lists of packages, lint checkers, etc.
+
+(guix-memoized-defun guix-graph-type-names ()
+  "Return a list of names of available graph node types."
+  (guix-eval-read (guix-make-guile-expression 'graph-type-names)))
+
+(guix-memoized-defun guix-refresh-updater-names ()
+  "Return a list of names of available refresh updater types."
+  (guix-eval-read (guix-make-guile-expression 'refresh-updater-names)))
+
+(guix-memoized-defun guix-lint-checker-names ()
+  "Return a list of names of available lint checkers."
+  (guix-eval-read (guix-make-guile-expression 'lint-checker-names)))
+
+(guix-memoized-defun guix-package-names ()
+  "Return a list of names of available packages."
+  (sort
+   ;; Work around <https://github.com/jaor/geiser/issues/64>:
+   ;; list of strings is parsed much slower than list of lists,
+   ;; so we use 'package-names-lists' instead of 'package-names'.
+
+   ;; (guix-eval-read (guix-make-guile-expression 'package-names))
+
+   (mapcar #'car
+           (guix-eval-read (guix-make-guile-expression
+                            'package-names-lists)))
+   #'string<))
 
 
 ;;; Buffers and auto updating.
@@ -391,8 +419,8 @@ following keywords are available:
          (buf-str        (concat buf-type-str " buffer"))
          (prefix         (concat "guix-" entry-type-str "-" buf-type-str))
          (group          (intern prefix))
+         (faces-group    (intern (concat prefix "-faces")))
          (mode-map-str   (concat prefix "-mode-map"))
-         (mode-map       (intern mode-map-str))
          (parent-mode    (intern (concat "guix-" buf-type-str "-mode")))
          (mode           (intern (concat prefix "-mode")))
          (mode-init-fun  (intern (concat prefix "-mode-initialize")))
@@ -420,6 +448,10 @@ following keywords are available:
          :prefix ,(concat prefix "-")
          :group ',(intern (concat "guix-" buf-type-str)))
 
+       (defgroup ,faces-group nil
+         ,(concat "Faces for " buf-type-str " buffer with " entry-str ".")
+         :group ',(intern (concat "guix-" buf-type-str "-faces")))
+
        (defcustom ,buf-name-var ,buf-name-val
          ,(concat "Default name of the " buf-str " for displaying " entry-str ".")
          :type 'string
@@ -767,7 +799,7 @@ GENERATION is a generation number of `guix-profile' profile."
 (defface guix-operation-option-key
   '((t :inherit font-lock-warning-face))
   "Face used for the keys of operation options."
-  :group 'guix)
+  :group 'guix-faces)
 
 (defcustom guix-operation-confirm t
   "If nil, do not prompt to confirm an operation."
@@ -910,11 +942,11 @@ ENTRIES is a list of package entries to get info about packages."
                   (outputs (cdr spec))
                   (entry (guix-get-entry-by-id id entries)))
              (when entry
-               (let ((location (guix-get-key-val entry 'location)))
+               (let ((location (guix-assq-value entry 'location)))
                  (concat (guix-get-full-name entry)
                          (when outputs
                            (concat ":"
-                                   (mapconcat #'identity outputs ",")))
+                                   (guix-concat-strings outputs ",")))
                          (when location
                            (concat "\t(" location ")")))))))
          specs)))
@@ -1007,7 +1039,7 @@ Each element from GENERATIONS is a generation number."
                               profile generation)))
     (guix-eval-in-repl
      (guix-make-guile-expression
-      'switch-to-generation profile generation)
+      'switch-to-generation* profile generation)
      operation-buffer)))
 
 (defun guix-package-source-path (package-id)
@@ -1060,6 +1092,66 @@ FILE.  With a prefix argument, also prompt for PROFILE."
       (concat "--manifest=" file))
      operation-buffer)))
 
+
+;;; Executing guix commands
+
+(defcustom guix-run-in-shell-function #'guix-run-in-shell
+  "Function used to run guix command.
+The function is called with a single argument - a command line string."
+  :type '(choice (function-item guix-run-in-shell)
+                 (function-item guix-run-in-eshell)
+                 (function :tag "Other function"))
+  :group 'guix)
+
+(defcustom guix-shell-buffer-name "*shell*"
+  "Default name of a shell buffer used for running guix commands."
+  :type 'string
+  :group 'guix)
+
+(declare-function comint-send-input "comint" t)
+
+(defun guix-run-in-shell (string)
+  "Run command line STRING in `guix-shell-buffer-name' buffer."
+  (shell guix-shell-buffer-name)
+  (goto-char (point-max))
+  (insert string)
+  (comint-send-input))
+
+(declare-function eshell-send-input "esh-mode" t)
+
+(defun guix-run-in-eshell (string)
+  "Run command line STRING in eshell buffer."
+  (eshell)
+  (goto-char (point-max))
+  (insert string)
+  (eshell-send-input))
+
+(defun guix-run-command-in-shell (args)
+  "Execute 'guix ARGS ...' command in a shell buffer."
+  (funcall guix-run-in-shell-function
+           (guix-command-string args)))
+
+(defun guix-run-command-in-repl (args)
+  "Execute 'guix ARGS ...' command in Guix REPL."
+  (guix-eval-in-repl
+   (apply #'guix-make-guile-expression
+          'guix-command args)))
+
+(defun guix-command-output (args)
+  "Return string with 'guix ARGS ...' output."
+  (cl-multiple-value-bind (output error)
+      (guix-eval (apply #'guix-make-guile-expression
+                        'guix-command-output args))
+    ;; Remove trailing new space from the error string.
+    (message (replace-regexp-in-string "\n\\'" "" (read error)))
+    (read output)))
+
+(defun guix-help-string (&optional commands)
+  "Return string with 'guix COMMANDS ... --help' output."
+  (guix-eval-read
+   (apply #'guix-make-guile-expression
+          'help-string commands)))
+
 
 ;;; Pull
 

emacs/guix-build-log.el

@@ -0,0 +1,371 @@
+;;; guix-build-log.el --- Major and minor modes for build logs   -*- lexical-binding: t -*-
+
+;; Copyright © 2015 Alex Kost <alezost@gmail.com>
+
+;; This file is part of GNU Guix.
+
+;; GNU Guix is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; GNU Guix is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+;;; Commentary:
+
+;; This file provides a major mode (`guix-build-log-mode') and a minor mode
+;; (`guix-build-log-minor-mode') for highlighting Guix build logs.
+
+;;; Code:
+
+(defgroup guix-build-log nil
+  "Settings for `guix-build-log-mode'."
+  :group 'guix)
+
+(defgroup guix-build-log-faces nil
+  "Faces for `guix-build-log-mode'."
+  :group 'guix-build-log
+  :group 'guix-faces)
+
+(defface guix-build-log-title-head
+  '((t :inherit font-lock-keyword-face))
+  "Face for '@' symbol of a log title."
+  :group 'guix-build-log-faces)
+
+(defface guix-build-log-title-start
+  '((t :inherit guix-build-log-title-head))
+  "Face for a log title denoting a start of a process."
+  :group 'guix-build-log-faces)
+
+(defface guix-build-log-title-success
+  '((t :inherit guix-build-log-title-head))
+  "Face for a log title denoting a successful end of a process."
+  :group 'guix-build-log-faces)
+
+(defface guix-build-log-title-fail
+  '((t :inherit error))
+  "Face for a log title denoting a failed end of a process."
+  :group 'guix-build-log-faces)
+
+(defface guix-build-log-title-end
+  '((t :inherit guix-build-log-title-head))
+  "Face for a log title denoting an undefined end of a process."
+  :group 'guix-build-log-faces)
+
+(defface guix-build-log-phase-name
+  '((t :inherit font-lock-function-name-face))
+  "Face for a phase name."
+  :group 'guix-build-log-faces)
+
+(defface guix-build-log-phase-start
+  '((default :weight bold)
+    (((class grayscale) (background light)) :foreground "Gray90")
+    (((class grayscale) (background dark))  :foreground "DimGray")
+    (((class color) (min-colors 16) (background light))
+     :foreground "DarkGreen")
+    (((class color) (min-colors 16) (background dark))
+     :foreground "LimeGreen")
+    (((class color) (min-colors 8)) :foreground "green"))
+  "Face for the start line of a phase."
+  :group 'guix-build-log-faces)
+
+(defface guix-build-log-phase-end
+  '((((class grayscale) (background light)) :foreground "Gray90")
+    (((class grayscale) (background dark))  :foreground "DimGray")
+    (((class color) (min-colors 16) (background light))
+     :foreground "ForestGreen")
+    (((class color) (min-colors 16) (background dark))
+     :foreground "LightGreen")
+    (((class color) (min-colors 8)) :foreground "green")
+    (t :weight bold))
+  "Face for the end line of a phase."
+  :group 'guix-build-log-faces)
+
+(defface guix-build-log-phase-success
+  '((t))
+  "Face for the 'succeeded' word of a phase line."
+  :group 'guix-build-log-faces)
+
+(defface guix-build-log-phase-fail
+  '((t :inherit error))
+  "Face for the 'failed' word of a phase line."
+  :group 'guix-build-log-faces)
+
+(defface guix-build-log-phase-seconds
+  '((t :inherit font-lock-constant-face))
+  "Face for the number of seconds for a phase."
+  :group 'guix-build-log-faces)
+
+(defcustom guix-build-log-minor-mode-activate t
+  "If non-nil, then `guix-build-log-minor-mode' is automatically
+activated in `shell-mode' buffers."
+  :type 'boolean
+  :group 'guix-build-log)
+
+(defcustom guix-build-log-mode-hook '()
+  "Hook run after `guix-build-log-mode' is entered."
+  :type 'hook
+  :group 'guix-build-log)
+
+(defvar guix-build-log-phase-name-regexp "`\\([^']+\\)'"
+  "Regexp for a phase name.")
+
+(defvar guix-build-log-phase-start-regexp
+  (concat "^starting phase " guix-build-log-phase-name-regexp)
+  "Regexp for the start line of a 'build' phase.")
+
+(defun guix-build-log-title-regexp (&optional state)
+  "Return regexp for the log title.
+STATE is a symbol denoting a state of the title.  It should be
+`start', `fail', `success' or `nil' (for a regexp matching any
+state)."
+  (let* ((word-rx (rx (1+ (any word "-"))))
+         (state-rx (cond ((eq state 'start)   (concat word-rx "started"))
+                         ((eq state 'success) (concat word-rx "succeeded"))
+                         ((eq state 'fail)    (concat word-rx "failed"))
+                         (t word-rx))))
+    (rx-to-string
+     `(and bol (group "@") " " (group (regexp ,state-rx)))
+     t)))
+
+(defun guix-build-log-phase-end-regexp (&optional state)
+  "Return regexp for the end line of a 'build' phase.
+STATE is a symbol denoting how a build phase was ended.  It should be
+`fail', `success' or `nil' (for a regexp matching any state)."
+  (let ((state-rx (cond ((eq state 'success) "succeeded")
+                        ((eq state 'fail)    "failed")
+                        (t (regexp-opt '("succeeded" "failed"))))))
+    (rx-to-string
+     `(and bol "phase " (regexp ,guix-build-log-phase-name-regexp)
+           " " (group (regexp ,state-rx)) " after "
+           (group (1+ (or digit "."))) " seconds")
+     t)))
+
+(defvar guix-build-log-phase-end-regexp
+  ;; For efficiency, it is better to have a regexp for the general line
+  ;; of the phase end, then to call the function all the time.
+  (guix-build-log-phase-end-regexp)
+  "Regexp for the end line of a 'build' phase.")
+
+(defvar guix-build-log-font-lock-keywords
+  `((,(guix-build-log-title-regexp 'start)
+     (1 'guix-build-log-title-head)
+     (2 'guix-build-log-title-start))
+    (,(guix-build-log-title-regexp 'success)
+     (1 'guix-build-log-title-head)
+     (2 'guix-build-log-title-success))
+    (,(guix-build-log-title-regexp 'fail)
+     (1 'guix-build-log-title-head)
+     (2 'guix-build-log-title-fail))
+    (,(guix-build-log-title-regexp)
+     (1 'guix-build-log-title-head)
+     (2 'guix-build-log-title-end))
+    (,guix-build-log-phase-start-regexp
+     (0 'guix-build-log-phase-start)
+     (1 'guix-build-log-phase-name prepend))
+    (,(guix-build-log-phase-end-regexp 'success)
+     (0 'guix-build-log-phase-end)
+     (1 'guix-build-log-phase-name prepend)
+     (2 'guix-build-log-phase-success prepend)
+     (3 'guix-build-log-phase-seconds prepend))
+    (,(guix-build-log-phase-end-regexp 'fail)
+     (0 'guix-build-log-phase-end)
+     (1 'guix-build-log-phase-name prepend)
+     (2 'guix-build-log-phase-fail prepend)
+     (3 'guix-build-log-phase-seconds prepend)))
+  "A list of `font-lock-keywords' for `guix-build-log-mode'.")
+
+(defvar guix-build-log-common-map
+  (let ((map (make-sparse-keymap)))
+    (define-key map (kbd "M-n") 'guix-build-log-next-phase)
+    (define-key map (kbd "M-p") 'guix-build-log-previous-phase)
+    (define-key map (kbd "TAB") 'guix-build-log-phase-toggle)
+    (define-key map (kbd "<tab>") 'guix-build-log-phase-toggle)
+    (define-key map (kbd "<backtab>") 'guix-build-log-phase-toggle-all)
+    (define-key map [(shift tab)] 'guix-build-log-phase-toggle-all)
+    map)
+  "Parent keymap for 'build-log' buffers.
+For `guix-build-log-mode' this map is used as is.
+For `guix-build-log-minor-mode' this map is prefixed with 'C-c'.")
+
+(defvar guix-build-log-mode-map
+  (let ((map (make-sparse-keymap)))
+    (set-keymap-parent
+     map (make-composed-keymap (list guix-build-log-common-map)
+                               special-mode-map))
+    (define-key map (kbd "c") 'compilation-shell-minor-mode)
+    (define-key map (kbd "v") 'view-mode)
+    map)
+  "Keymap for `guix-build-log-mode' buffers.")
+
+(defvar guix-build-log-minor-mode-map
+  (let ((map (make-sparse-keymap)))
+    (define-key map (kbd "C-c") guix-build-log-common-map)
+    map)
+  "Keymap for `guix-build-log-minor-mode' buffers.")
+
+(defun guix-build-log-phase-start (&optional with-header?)
+  "Return the start point of the current build phase.
+If WITH-HEADER? is non-nil, do not skip 'starting phase ...' header.
+Return nil, if there is no phase start before the current point."
+  (save-excursion
+    (end-of-line)
+    (when (re-search-backward guix-build-log-phase-start-regexp nil t)
+      (unless with-header? (end-of-line))
+      (point))))
+
+(defun guix-build-log-phase-end ()
+  "Return the end point of the current build phase."
+  (save-excursion
+    (beginning-of-line)
+    (when (re-search-forward guix-build-log-phase-end-regexp nil t)
+      (point))))
+
+(defun guix-build-log-phase-hide ()
+  "Hide the body of the current build phase."
+  (interactive)
+  (let ((beg (guix-build-log-phase-start))
+        (end (guix-build-log-phase-end)))
+    (when (and beg end)
+      ;; If not on the header line, move to it.
+      (when (and (> (point) beg)
+                 (< (point) end))
+        (goto-char (guix-build-log-phase-start t)))
+      (remove-overlays beg end 'invisible t)
+      (let ((o (make-overlay beg end)))
+        (overlay-put o 'evaporate t)
+        (overlay-put o 'invisible t)))))
+
+(defun guix-build-log-phase-show ()
+  "Show the body of the current build phase."
+  (interactive)
+  (let ((beg (guix-build-log-phase-start))
+        (end (guix-build-log-phase-end)))
+    (when (and beg end)
+      (remove-overlays beg end 'invisible t))))
+
+(defun guix-build-log-phase-hidden-p ()
+  "Return non-nil, if the body of the current build phase is hidden."
+  (let ((beg (guix-build-log-phase-start)))
+    (and beg
+         (cl-some (lambda (o)
+                    (overlay-get o 'invisible))
+                  (overlays-at beg)))))
+
+(defun guix-build-log-phase-toggle-function ()
+  "Return a function to toggle the body of the current build phase."
+  (if (guix-build-log-phase-hidden-p)
+      #'guix-build-log-phase-show
+    #'guix-build-log-phase-hide))
+
+(defun guix-build-log-phase-toggle ()
+  "Show/hide the body of the current build phase."
+  (interactive)
+  (funcall (guix-build-log-phase-toggle-function)))
+
+(defun guix-build-log-phase-toggle-all ()
+  "Show/hide the bodies of all build phases."
+  (interactive)
+  (save-excursion
+    ;; Some phases may be hidden, and some shown.  Whether to hide or to
+    ;; show them, it is determined by the state of the first phase here.
+    (goto-char (point-min))
+    (let ((fun (save-excursion
+                 (re-search-forward guix-build-log-phase-start-regexp nil t)
+                 (guix-build-log-phase-toggle-function))))
+      (while (re-search-forward guix-build-log-phase-start-regexp nil t)
+        (funcall fun)))))
+
+(defun guix-build-log-next-phase (&optional arg)
+  "Move to the next build phase.
+With ARG, do it that many times.  Negative ARG means move
+backward."
+  (interactive "^p")
+  (if arg
+      (when (zerop arg) (user-error "Try again"))
+    (setq arg 1))
+  (let ((search-fun (if (> arg 0)
+                        #'re-search-forward
+                      #'re-search-backward))
+        (n (abs arg))
+        found last-found)
+    (save-excursion
+      (end-of-line (if (> arg 0) 1 0))  ; skip the current line
+      (while (and (not (zerop n))
+                  (setq found
+                        (funcall search-fun
+                                 guix-build-log-phase-start-regexp
+                                 nil t)))
+        (setq n (1- n)
+              last-found found)))
+    (when last-found
+      (goto-char last-found)
+      (forward-line 0))
+    (or found
+        (user-error (if (> arg 0)
+                        "No next build phase"
+                      "No previous build phase")))))
+
+(defun guix-build-log-previous-phase (&optional arg)
+  "Move to the previous build phase.
+With ARG, do it that many times.  Negative ARG means move
+forward."
+  (interactive "^p")
+  (guix-build-log-next-phase (- (or arg 1))))
+
+;;;###autoload
+(define-derived-mode guix-build-log-mode special-mode
+  "Guix-Build-Log"
+  "Major mode for viewing Guix build logs.
+
+\\{guix-build-log-mode-map}"
+  (setq font-lock-defaults '(guix-build-log-font-lock-keywords t)))
+
+;;;###autoload
+(define-minor-mode guix-build-log-minor-mode
+  "Toggle Guix Build Log minor mode.
+
+With a prefix argument ARG, enable Guix Build Log minor mode if
+ARG is positive, and disable it otherwise.  If called from Lisp,
+enable the mode if ARG is omitted or nil.
+
+When Guix Build Log minor mode is enabled, it highlights build
+log in the current buffer.  This mode can be enabled
+programmatically using hooks:
+
+  (add-hook 'shell-mode-hook 'guix-build-log-minor-mode)
+
+\\{guix-build-log-minor-mode-map}"
+  :init-value nil
+  :lighter " Guix-Build-Log"
+  :keymap guix-build-log-minor-mode-map
+  :group 'guix-build-log
+  (if guix-build-log-minor-mode
+      (font-lock-add-keywords nil guix-build-log-font-lock-keywords)
+    (font-lock-remove-keywords nil guix-build-log-font-lock-keywords))
+  (when font-lock-mode
+    (font-lock-fontify-buffer)))
+
+;;;###autoload
+(defun guix-build-log-minor-mode-activate-maybe ()
+  "Activate `guix-build-log-minor-mode' depending on
+`guix-build-log-minor-mode-activate' variable."
+  (when guix-build-log-minor-mode-activate
+    (guix-build-log-minor-mode)))
+
+;;;###autoload
+(add-to-list 'auto-mode-alist
+             ;; Regexp for log files (usually placed in /var/log/guix/...)
+             (cons (rx "/guix/drvs/" (= 2 alnum) "/" (= 30 alnum)
+                       "-" (+ (any alnum "-+.")) ".drv" string-end)
+                   'guix-build-log-mode))
+
+(provide 'guix-build-log)
+
+;;; guix-build-log.el ends here

emacs/guix-command.el

@@ -0,0 +1,720 @@
+;;; guix-command.el --- Popup interface for guix commands  -*- lexical-binding: t -*-
+
+;; Copyright © 2015 Alex Kost <alezost@gmail.com>
+
+;; This file is part of GNU Guix.
+
+;; GNU Guix is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; GNU Guix is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+;;; Commentary:
+
+;; This file provides a magit-like popup interface for running guix
+;; commands in Guix REPL.  The entry point is "M-x guix".  When it is
+;; called the first time, "guix --help" output is parsed and
+;; `guix-COMMAND-action' functions are generated for each available guix
+;; COMMAND.  Then a window with these commands is popped up.  When a
+;; particular COMMAND is called, "guix COMMAND --help" output is parsed,
+;; and a user get a new popup window with available options for this
+;; command and so on.
+
+;; To avoid hard-coding all guix options, actions, etc., as much data is
+;; taken from "guix ... --help" outputs as possible.  But this data is
+;; still incomplete: not all long options have short analogs, also
+;; special readers should be used for some options (for example, to
+;; complete package names while prompting for a package).  So after
+;; parsing --help output, the arguments are "improved".  All arguments
+;; (switches, options and actions) are `guix-command-argument'
+;; structures.
+
+;; Only "M-x guix" command is available after this file is loaded.  The
+;; rest commands/actions/popups are generated on the fly only when they
+;; are needed (that's why there is a couple of `eval'-s in this file).
+
+;; COMMANDS argument is used by many functions in this file.  It means a
+;; list of guix commands without "guix" itself, e.g.: ("build"),
+;; ("import" "gnu").  The empty list stands for the plain "guix" without
+;; subcommands.
+
+;; All actions in popup windows are divided into 2 groups:
+;;
+;; - 'Popup' actions - used to pop up another window.  For example, every
+;;   action in the 'guix' or 'guix import' window is a popup action.  They
+;;   are defined by `guix-command-define-popup-action' macro.
+;;
+;; - 'Execute' actions - used to do something with the command line (to
+;;   run a command in Guix REPL or to copy it into kill-ring) constructed
+;;   with the current popup.  They are defined by
+;;   `guix-command-define-execute-action' macro.
+
+;;; Code:
+
+(require 'cl-lib)
+(require 'guix-popup)
+(require 'guix-utils)
+(require 'guix-help-vars)
+(require 'guix-read)
+(require 'guix-base)
+(require 'guix-guile)
+(require 'guix-external)
+
+(defgroup guix-commands nil
+  "Settings for guix popup windows."
+  :group 'guix)
+
+(defvar guix-command-complex-with-shared-arguments
+  '("system")
+  "List of guix commands which have subcommands with shared options.
+I.e., 'guix foo --help' is the same as 'guix foo bar --help'.")
+
+(defun guix-command-action-name (&optional commands &rest name-parts)
+  "Return name of action function for guix COMMANDS."
+  (guix-command-symbol (append commands name-parts (list "action"))))
+
+
+;;; Command arguments
+
+(cl-defstruct (guix-command-argument
+               (:constructor guix-command-make-argument)
+               (:copier      guix-command-copy-argument))
+  name char doc fun switch? option? action?)
+
+(cl-defun guix-command-modify-argument
+    (argument &key
+              (name    nil name-bound?)
+              (char    nil char-bound?)
+              (doc     nil doc-bound?)
+              (fun     nil fun-bound?)
+              (switch? nil switch?-bound?)
+              (option? nil option?-bound?)
+              (action? nil action?-bound?))
+  "Return a modified version of ARGUMENT."
+  (declare (indent 1))
+  (let ((copy (guix-command-copy-argument argument)))
+    (and name-bound?    (setf (guix-command-argument-name    copy) name))
+    (and char-bound?    (setf (guix-command-argument-char    copy) char))
+    (and doc-bound?     (setf (guix-command-argument-doc     copy) doc))
+    (and fun-bound?     (setf (guix-command-argument-fun     copy) fun))
+    (and switch?-bound? (setf (guix-command-argument-switch? copy) switch?))
+    (and option?-bound? (setf (guix-command-argument-option? copy) option?))
+    (and action?-bound? (setf (guix-command-argument-action? copy) action?))
+    copy))
+
+(defun guix-command-modify-argument-from-alist (argument alist)
+  "Return a modified version of ARGUMENT or nil if it wasn't modified.
+Each assoc from ALIST have a form (NAME . PLIST).  NAME is an
+argument name.  PLIST is a property list of argument parameters
+to be modified."
+  (let* ((name  (guix-command-argument-name argument))
+         (plist (guix-assoc-value alist name)))
+    (when plist
+      (apply #'guix-command-modify-argument
+             argument plist))))
+
+(defmacro guix-command-define-argument-improver (name alist)
+  "Define NAME variable and function to modify an argument from ALIST."
+  (declare (indent 1))
+  `(progn
+     (defvar ,name ,alist)
+     (defun ,name (argument)
+       (guix-command-modify-argument-from-alist argument ,name))))
+
+(guix-command-define-argument-improver
+    guix-command-improve-action-argument
+  '(("graph"       :char ?G)
+    ("environment" :char ?E)
+    ("publish"     :char ?u)
+    ("pull"        :char ?P)
+    ("size"        :char ?z)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-common-argument
+  '(("--help"    :switch? nil)
+    ("--version" :switch? nil)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-target-argument
+  '(("--target" :char ?T)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-system-type-argument
+  '(("--system" :fun guix-read-system-type)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-load-path-argument
+  '(("--load-path" :fun read-directory-name)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-search-paths-argument
+  '(("--search-paths" :char ?P)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-substitute-urls-argument
+  '(("--substitute-urls" :char ?U)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-hash-argument
+  '(("--format" :fun guix-read-hash-format)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-key-policy-argument
+  '(("--key-download" :fun guix-read-key-policy)))
+
+(defvar guix-command-improve-common-build-argument
+  '(("--no-substitutes"  :char ?s)
+    ("--no-build-hook"   :char ?h)
+    ("--max-silent-time" :char ?x)))
+
+(defun guix-command-improve-common-build-argument (argument)
+  (guix-command-modify-argument-from-alist
+   argument
+   (append guix-command-improve-load-path-argument
+           guix-command-improve-substitute-urls-argument
+           guix-command-improve-common-build-argument)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-archive-argument
+  '(("--generate-key" :char ?k)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-build-argument
+  '(("--no-grafts"   :char ?g)
+    ("--root"        :fun guix-read-file-name)
+    ("--sources"     :char ?S :fun guix-read-source-type :switch? nil)
+    ("--with-source" :fun guix-read-file-name)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-environment-argument
+  '(("--exec" :fun read-shell-command)
+    ("--load" :fun guix-read-file-name)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-gc-argument
+  '(("--list-dead" :char ?D)
+    ("--list-live" :char ?L)
+    ("--referrers" :char ?f)
+    ("--verify"    :fun guix-read-verify-options-string)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-graph-argument
+  '(("--type" :fun guix-read-graph-type)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-import-argument
+  '(("cran" :char ?r)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-import-elpa-argument
+  '(("--archive" :fun guix-read-elpa-archive)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-lint-argument
+  '(("--checkers" :fun guix-read-lint-checker-names-string)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-package-argument
+  ;; Unlike all other options, --install/--remove do not have a form
+  ;; '--install=foo,bar' but '--install foo bar' instead, so we need
+  ;; some tweaks.
+  '(("--install"
+     :name "--install " :fun guix-read-package-names-string
+     :switch? nil :option? t)
+    ("--remove"
+     :name "--remove "  :fun guix-read-package-names-string
+     :switch? nil :option? t)
+    ("--install-from-file" :fun guix-read-file-name)
+    ("--manifest"       :fun guix-read-file-name)
+    ("--do-not-upgrade" :char ?U)
+    ("--roll-back"      :char ?R)
+    ("--show"           :char ?w :fun guix-read-package-name)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-refresh-argument
+  '(("--select"     :fun guix-read-refresh-subset)
+    ("--type"       :fun guix-read-refresh-updater-names-string)
+    ("--key-server" :char ?S)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-size-argument
+  '(("--map-file" :fun guix-read-file-name)))
+
+(guix-command-define-argument-improver
+    guix-command-improve-system-argument
+  '(("disk-image"  :char ?D)
+    ("vm-image"    :char ?V)
+    ("--on-error"  :char ?E)
+    ("--no-grub"   :char ?g)
+    ("--full-boot" :char ?b)))
+
+(defvar guix-command-argument-improvers
+  '((()
+     guix-command-improve-action-argument)
+    (("archive")
+     guix-command-improve-common-build-argument
+     guix-command-improve-target-argument
+     guix-command-improve-system-type-argument
+     guix-command-improve-archive-argument)
+    (("build")
+     guix-command-improve-common-build-argument
+     guix-command-improve-target-argument
+     guix-command-improve-system-type-argument
+     guix-command-improve-build-argument)
+    (("download")
+     guix-command-improve-hash-argument)
+    (("hash")
+     guix-command-improve-hash-argument)
+    (("environment")
+     guix-command-improve-common-build-argument
+     guix-command-improve-search-paths-argument
+     guix-command-improve-system-type-argument
+     guix-command-improve-environment-argument)
+    (("gc")
+     guix-command-improve-gc-argument)
+    (("graph")
+     guix-command-improve-graph-argument)
+    (("import")
+     guix-command-improve-import-argument)
+    (("import" "gnu")
+     guix-command-improve-key-policy-argument)
+    (("import" "elpa")
+     guix-command-improve-import-elpa-argument)
+    (("lint")
+     guix-command-improve-lint-argument)
+    (("package")
+     guix-command-improve-common-build-argument
+     guix-command-improve-search-paths-argument
+     guix-command-improve-package-argument)
+    (("refresh")
+     guix-command-improve-key-policy-argument
+     guix-command-improve-refresh-argument)
+    (("size")
+     guix-command-improve-system-type-argument
+     guix-command-improve-substitute-urls-argument
+     guix-command-improve-size-argument)
+    (("system")
+     guix-command-improve-common-build-argument
+     guix-command-improve-system-argument))
+  "Alist of guix commands and argument improvers for them.")
+
+(defun guix-command-improve-argument (argument improvers)
+  "Return ARGUMENT modified with IMPROVERS."
+  (or (cl-some (lambda (improver)
+                 (funcall improver argument))
+               improvers)
+      argument))
+
+(defun guix-command-improve-arguments (arguments commands)
+  "Return ARGUMENTS for 'guix COMMANDS ...' modified for popup interface."
+  (let ((improvers (cons 'guix-command-improve-common-argument
+                         (guix-assoc-value guix-command-argument-improvers
+                                           commands))))
+    (mapcar (lambda (argument)
+              (guix-command-improve-argument argument improvers))
+            arguments)))
+
+(defun guix-command-parse-arguments (&optional commands)
+  "Return a list of parsed 'guix COMMANDS ...' arguments."
+  (with-temp-buffer
+    (insert (guix-help-string commands))
+    (let (args)
+      (guix-while-search guix-help-parse-option-regexp
+        (let* ((short (match-string-no-properties 1))
+               (name  (match-string-no-properties 2))
+               (arg   (match-string-no-properties 3))
+               (doc   (match-string-no-properties 4))
+               (char  (if short
+                          (elt short 1) ; short option letter
+                        (elt name 2))) ; first letter of the long option
+               ;; If "--foo=bar" or "--foo[=bar]" then it is 'option'.
+               (option? (not (string= "" arg)))
+               ;; If "--foo" or "--foo[=bar]" then it is 'switch'.
+               (switch? (or (string= "" arg)
+                            (eq ?\[ (elt arg 0)))))
+          (push (guix-command-make-argument
+                 :name    name
+                 :char    char
+                 :doc     doc
+                 :switch? switch?
+                 :option? option?)
+                args)))
+      (guix-while-search guix-help-parse-command-regexp
+        (let* ((name (match-string-no-properties 1))
+               (char (elt name 0)))
+          (push (guix-command-make-argument
+                 :name    name
+                 :char    char
+                 :fun     (guix-command-action-name commands name)
+                 :action? t)
+                args)))
+      args)))
+
+(defun guix-command-rest-argument (&optional commands)
+  "Return '--' argument for COMMANDS."
+  (cl-flet ((argument (&rest args)
+              (apply #'guix-command-make-argument
+                     :name "-- " :char ?= :option? t args)))
+    (let ((command (car commands)))
+      (cond
+       ((member command
+                '("archive" "build" "challenge" "edit" "environment"
+                  "graph" "lint" "refresh"))
+        (argument :doc "Packages" :fun 'guix-read-package-names-string))
+       ((string= command "download")
+        (argument :doc "URL"))
+       ((string= command "gc")
+        (argument :doc "Paths" :fun 'guix-read-file-name))
+       ((member command '("hash" "system"))
+        (argument :doc "File" :fun 'guix-read-file-name))
+       ((string= command "size")
+        (argument :doc "Package" :fun 'guix-read-package-name))
+       ((equal commands '("import" "nix"))
+        (argument :doc "Nixpkgs Attribute"))
+       ;; Other 'guix import' subcommands, but not 'import' itself.
+       ((and (cdr commands)
+             (string= command "import"))
+        (argument :doc "Package name"))))))
+
+(defun guix-command-additional-arguments (&optional commands)
+  "Return additional arguments for COMMANDS."
+  (let ((rest-arg (guix-command-rest-argument commands)))
+    (and rest-arg (list rest-arg))))
+
+;; Ideally only `guix-command-arguments' function should exist with the
+;; contents of `guix-command-all-arguments', but we need to make a
+;; special case for `guix-command-complex-with-shared-arguments' commands.
+
+(defun guix-command-all-arguments (&optional commands)
+  "Return list of all arguments for 'guix COMMANDS ...'."
+  (let ((parsed (guix-command-parse-arguments commands)))
+    (append (guix-command-improve-arguments parsed commands)
+            (guix-command-additional-arguments commands))))
+
+(guix-memoized-defalias guix-command-all-arguments-memoize
+  guix-command-all-arguments)
+
+(defun guix-command-arguments (&optional commands)
+  "Return list of arguments for 'guix COMMANDS ...'."
+  (let ((command (car commands)))
+    (if (member command
+                guix-command-complex-with-shared-arguments)
+        ;; Take actions only for 'guix system', and switches+options for
+        ;; 'guix system foo'.
+        (funcall (if (null (cdr commands))
+                     #'cl-remove-if-not
+                   #'cl-remove-if)
+                 #'guix-command-argument-action?
+                 (guix-command-all-arguments-memoize (list command)))
+      (guix-command-all-arguments commands))))
+
+(defun guix-command-switch->popup-switch (switch)
+  "Return popup switch from command SWITCH argument."
+  (list (guix-command-argument-char switch)
+        (or (guix-command-argument-doc switch)
+            "Unknown")
+        (guix-command-argument-name switch)))
+
+(defun guix-command-option->popup-option (option)
+  "Return popup option from command OPTION argument."
+  (list (guix-command-argument-char option)
+        (or (guix-command-argument-doc option)
+            "Unknown")
+        (let ((name (guix-command-argument-name option)))
+          (if (string-match-p " \\'" name) ; ends with space
+              name
+            (concat name "=")))
+        (or (guix-command-argument-fun option)
+            'read-from-minibuffer)))
+
+(defun guix-command-action->popup-action (action)
+  "Return popup action from command ACTION argument."
+  (list (guix-command-argument-char action)
+        (or (guix-command-argument-doc action)
+            (guix-command-argument-name action)
+            "Unknown")
+        (guix-command-argument-fun action)))
+
+(defun guix-command-sort-arguments (arguments)
+  "Sort ARGUMENTS by name in alphabetical order."
+  (sort arguments
+        (lambda (a1 a2)
+          (let ((name1 (guix-command-argument-name a1))
+                (name2 (guix-command-argument-name a2)))
+            (cond ((null name1) nil)
+                  ((null name2) t)
+                  (t (string< name1 name2)))))))
+
+(defun guix-command-switches (arguments)
+  "Return switches from ARGUMENTS."
+  (cl-remove-if-not #'guix-command-argument-switch? arguments))
+
+(defun guix-command-options (arguments)
+  "Return options from ARGUMENTS."
+  (cl-remove-if-not #'guix-command-argument-option? arguments))
+
+(defun guix-command-actions (arguments)
+  "Return actions from ARGUMENTS."
+  (cl-remove-if-not #'guix-command-argument-action? arguments))
+
+(defun guix-command-post-process-args (args)
+  "Adjust appropriately command line ARGS returned from popup command."
+  ;; XXX We need to split "--install foo bar" and similar strings into
+  ;; lists of strings.  But some commands (e.g., 'guix hash') accept a
+  ;; file name as the 'rest' argument, and as file names may contain
+  ;; spaces, splitting by spaces will break such names.  For example, the
+  ;; following argument: "-- /tmp/file with spaces" will be transformed
+  ;; into the following list: ("--" "/tmp/file" "with" "spaces") instead
+  ;; of the wished ("--" "/tmp/file with spaces").
+  (let* (rest
+         (rx (rx string-start
+                 (or "-- " "--install " "--remove ")))
+         (args (mapcar (lambda (arg)
+                         (if (string-match-p rx arg)
+                             (progn (push (split-string arg) rest)
+                                    nil)
+                           arg))
+                       args)))
+    (if rest
+        (apply #'append (delq nil args) rest)
+      args)))
+
+
+;;; 'Execute' actions
+
+(defvar guix-command-default-execute-arguments
+  (list
+   (guix-command-make-argument
+    :name "repl"  :char ?r :doc "Run in Guix REPL")
+   (guix-command-make-argument
+    :name "shell" :char ?s :doc "Run in shell")
+   (guix-command-make-argument
+    :name "copy"  :char ?c :doc "Copy command line"))
+  "List of default 'execute' action arguments.")
+
+(defvar guix-command-additional-execute-arguments
+  (let ((graph-arg (guix-command-make-argument
+                    :name "view" :char ?v :doc "View graph")))
+    `((("build")
+       ,(guix-command-make-argument
+         :name "log" :char ?l :doc "View build log"))
+      (("graph") ,graph-arg)
+      (("size")
+       ,(guix-command-make-argument
+         :name "view" :char ?v :doc "View map"))
+      (("system" "dmd-graph") ,graph-arg)
+      (("system" "extension-graph") ,graph-arg)))
+  "Alist of guix commands and additional 'execute' action arguments.")
+
+(defun guix-command-execute-arguments (commands)
+  "Return a list of 'execute' action arguments for COMMANDS."
+  (mapcar (lambda (arg)
+            (guix-command-modify-argument arg
+              :action? t
+              :fun (guix-command-action-name
+                    commands (guix-command-argument-name arg))))
+          (append guix-command-default-execute-arguments
+                  (guix-assoc-value
+                   guix-command-additional-execute-arguments commands))))
+
+(defvar guix-command-special-executors
+  '((("environment")
+     ("repl" . guix-run-environment-command-in-repl))
+    (("pull")
+     ("repl" . guix-run-pull-command-in-repl))
+    (("build")
+     ("log" . guix-run-view-build-log))
+    (("graph")
+     ("view" . guix-run-view-graph))
+    (("size")
+     ("view" . guix-run-view-size-map))
+    (("system" "dmd-graph")
+     ("view" . guix-run-view-graph))
+    (("system" "extension-graph")
+     ("view" . guix-run-view-graph)))
+  "Alist of guix commands and alists of special executers for them.
+See also `guix-command-default-executors'.")
+
+(defvar guix-command-default-executors
+  '(("repl"  . guix-run-command-in-repl)
+    ("shell" . guix-run-command-in-shell)
+    ("copy"  . guix-copy-command-as-kill))
+  "Alist of default executers for action names.")
+
+(defun guix-command-executor (commands name)
+  "Return function to run command line arguments for guix COMMANDS."
+  (or (guix-assoc-value guix-command-special-executors commands name)
+      (guix-assoc-value guix-command-default-executors name)))
+
+(defun guix-run-environment-command-in-repl (args)
+  "Run 'guix ARGS ...' environment command in Guix REPL."
+  ;; As 'guix environment' usually tries to run another process, it may
+  ;; be fun but not wise to run this command in Geiser REPL.
+  (when (or (member "--dry-run" args)
+            (member "--search-paths" args)
+            (when (y-or-n-p
+                   (format "'%s' command will spawn an external process.
+Do you really want to execute this command in Geiser REPL? "
+                           (guix-command-string args)))
+              (message "May \"M-x shell-mode\" be with you!")
+              t))
+    (guix-run-command-in-repl args)))
+
+(defun guix-run-pull-command-in-repl (args)
+  "Run 'guix ARGS ...' pull command in Guix REPL.
+Perform pull-specific actions after operation, see
+`guix-after-pull-hook' and `guix-update-after-pull'."
+  (guix-eval-in-repl
+   (apply #'guix-make-guile-expression 'guix-command args)
+   nil 'pull))
+
+(defun guix-run-view-build-log (args)
+  "Add --log-file to ARGS, run 'guix ARGS ...' build command, and
+open the log file(s)."
+  (let* ((args (if (member "--log-file" args)
+                   args
+                 (apply #'list (car args) "--log-file" (cdr args))))
+         (output (guix-command-output args))
+         (files  (split-string output "\n" t)))
+    (dolist (file files)
+      (guix-find-file-or-url file)
+      (guix-build-log-mode))))
+
+(defun guix-run-view-graph (args)
+  "Run 'guix ARGS ...' graph command, make the image and open it."
+  (let* ((graph-file (guix-dot-file-name))
+         (dot-args   (guix-dot-arguments graph-file)))
+    (if (guix-eval-read (guix-make-guile-expression
+                         'pipe-guix-output args dot-args))
+        (guix-find-file graph-file)
+      (error "Couldn't create a graph"))))
+
+(defun guix-run-view-size-map (args)
+  "Run 'guix ARGS ...' size command, and open the map file."
+  (let* ((wished-map-file
+          (cl-some (lambda (arg)
+                     (and (string-match "--map-file=\\(.+\\)" arg)
+                          (match-string 1 arg)))
+                   args))
+         (map-file (or wished-map-file (guix-png-file-name)))
+         (args (if wished-map-file
+                   args
+                 (apply #'list
+                        (car args)
+                        (concat "--map-file=" map-file)
+                        (cdr args)))))
+    (guix-command-output args)
+    (guix-find-file map-file)))
+
+
+;;; Generating popups, actions, etc.
+
+(defmacro guix-command-define-popup-action (name &optional commands)
+  "Define NAME function to generate (if needed) and run popup for COMMANDS."
+  (declare (indent 1) (debug t))
+  (let* ((popup-fun (guix-command-symbol `(,@commands "popup")))
+         (doc (format "Call `%s' (generate it if needed)."
+                      popup-fun)))
+    `(defun ,name (&optional arg)
+       ,doc
+       (interactive "P")
+       (unless (fboundp ',popup-fun)
+         (guix-command-generate-popup ',popup-fun ',commands))
+       (,popup-fun arg))))
+
+(defmacro guix-command-define-execute-action (name executor
+                                                   &optional commands)
+  "Define NAME function to execute the current action for guix COMMANDS.
+EXECUTOR function is called with the current command line arguments."
+  (declare (indent 1) (debug t))
+  (let* ((arguments-fun (guix-command-symbol `(,@commands "arguments")))
+         (doc (format "Call `%s' with the current popup arguments."
+                      executor)))
+    `(defun ,name (&rest args)
+       ,doc
+       (interactive (,arguments-fun))
+       (,executor (append ',commands
+                          (guix-command-post-process-args args))))))
+
+(defun guix-command-generate-popup-actions (actions &optional commands)
+  "Generate 'popup' commands from ACTIONS arguments for guix COMMANDS."
+  (dolist (action actions)
+    (let ((fun (guix-command-argument-fun action)))
+      (unless (fboundp fun)
+        (eval `(guix-command-define-popup-action ,fun
+                 ,(append commands
+                          (list (guix-command-argument-name action)))))))))
+
+(defun guix-command-generate-execute-actions (actions &optional commands)
+  "Generate 'execute' commands from ACTIONS arguments for guix COMMANDS."
+  (dolist (action actions)
+    (let ((fun (guix-command-argument-fun action)))
+      (unless (fboundp fun)
+        (eval `(guix-command-define-execute-action ,fun
+                 ,(guix-command-executor
+                   commands (guix-command-argument-name action))
+                 ,commands))))))
+
+(defun guix-command-generate-popup (name &optional commands)
+  "Define NAME popup with 'guix COMMANDS ...' interface."
+  (let* ((command  (car commands))
+         (man-page (concat "guix" (and command (concat "-" command))))
+         (doc      (format "Popup window for '%s' command."
+                           (guix-concat-strings (cons "guix" commands)
+                                                " ")))
+         (args     (guix-command-arguments commands))
+         (switches (guix-command-sort-arguments
+                    (guix-command-switches args)))
+         (options  (guix-command-sort-arguments
+                    (guix-command-options args)))
+         (popup-actions (guix-command-sort-arguments
+                         (guix-command-actions args)))
+         (execute-actions (unless popup-actions
+                            (guix-command-execute-arguments commands)))
+         (actions (or popup-actions execute-actions)))
+    (if popup-actions
+        (guix-command-generate-popup-actions popup-actions commands)
+      (guix-command-generate-execute-actions execute-actions commands))
+    (eval
+     `(guix-define-popup ,name
+        ,doc
+        'guix-commands
+        :man-page ,man-page
+        :switches ',(mapcar #'guix-command-switch->popup-switch switches)
+        :options  ',(mapcar #'guix-command-option->popup-option options)
+        :actions  ',(mapcar #'guix-command-action->popup-action actions)
+        :max-action-columns 4))))
+
+;;;###autoload (autoload 'guix "guix-command" "Popup window for 'guix'." t)
+(guix-command-define-popup-action guix)
+
+(defalias 'guix-edit-action #'guix-edit)
+
+
+(defvar guix-command-font-lock-keywords
+  (eval-when-compile
+    `((,(rx "("
+            (group "guix-command-define-"
+                   (or "popup-action"
+                       "execute-action"
+                       "argument-improver"))
+            symbol-end
+            (zero-or-more blank)
+            (zero-or-one
+             (group (one-or-more (or (syntax word) (syntax symbol))))))
+       (1 font-lock-keyword-face)
+       (2 font-lock-function-name-face nil t)))))
+
+(font-lock-add-keywords 'emacs-lisp-mode guix-command-font-lock-keywords)
+
+(provide 'guix-command)
+
+;;; guix-command.el ends here

emacs/guix-config.el.in

@@ -0,0 +1,38 @@
+;;; guix-config.el --- Compile-time configuration of Guix.
+
+;; Copyright © 2015 Mathieu Lirzin <mthl@openmailbox.org>
+;; Copyright © 2015 Alex Kost <alezost@gmail.com>
+
+;; This file is part of GNU Guix.
+
+;; GNU Guix is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; GNU Guix is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+;;; Code:
+
+(defconst guix-config-emacs-interface-directory
+  (replace-regexp-in-string "${prefix}" "@prefix@" "@emacsuidir@"))
+
+(defconst guix-config-state-directory
+  ;; This must match `NIX_STATE_DIR' as defined in `daemon.am'.
+  (or (getenv "NIX_STATE_DIR") "@guix_localstatedir@/guix"))
+
+(defconst guix-config-guile-program "@GUILE@"
+  "Name of the 'guile' executable defined at configure time.")
+
+(defconst guix-config-dot-program "@DOT_USER_PROGRAM@"
+  "Name of the 'dot' executable defined at configure time.")
+
+(provide 'guix-config)
+
+;;; guix-config.el ends here

emacs/guix-devel.el

@@ -0,0 +1,377 @@
+;;; guix-devel.el --- Development tools   -*- lexical-binding: t -*-
+
+;; Copyright © 2015 Alex Kost <alezost@gmail.com>
+
+;; This file is part of GNU Guix.
+
+;; GNU Guix is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; GNU Guix is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+;;; Commentary:
+
+;; This file provides commands useful for developing Guix (or even
+;; arbitrary Guile code) with Geiser.
+
+;;; Code:
+
+(require 'lisp-mode)
+(require 'guix-guile)
+(require 'guix-geiser)
+(require 'guix-utils)
+(require 'guix-base)
+
+(defgroup guix-devel nil
+  "Settings for Guix development utils."
+  :group 'guix)
+
+(defgroup guix-devel-faces nil
+  "Faces for `guix-devel-mode'."
+  :group 'guix-devel
+  :group 'guix-faces)
+
+(defface guix-devel-modify-phases-keyword
+  '((t :inherit font-lock-preprocessor-face))
+  "Face for a `modify-phases' keyword ('delete', 'replace', etc.)."
+  :group 'guix-devel-faces)
+
+(defface guix-devel-gexp-symbol
+  '((t :inherit font-lock-keyword-face))
+  "Face for gexp symbols ('#~', '#$', etc.).
+See Info node `(guix) G-Expressions'."
+  :group 'guix-devel-faces)
+
+(defcustom guix-devel-activate-mode t
+  "If non-nil, then `guix-devel-mode' is automatically activated
+in Scheme buffers."
+  :type 'boolean
+  :group 'guix-devel)
+
+(defun guix-devel-use-modules (&rest modules)
+  "Use guile MODULES."
+  (apply #'guix-geiser-call "use-modules" modules))
+
+(defun guix-devel-use-module (&optional module)
+  "Use guile MODULE in the current Geiser REPL.
+MODULE is a string with the module name - e.g., \"(ice-9 match)\".
+Interactively, use the module defined by the current scheme file."
+  (interactive (list (guix-guile-current-module)))
+  (guix-devel-use-modules module)
+  (message "Using %s module." module))
+
+(defun guix-devel-copy-module-as-kill ()
+  "Put the name of the current guile module into `kill-ring'."
+  (interactive)
+  (guix-copy-as-kill (guix-guile-current-module)))
+
+(defun guix-devel-setup-repl (&optional repl)
+  "Setup REPL for using `guix-devel-...' commands."
+  (guix-devel-use-modules "(guix monad-repl)"
+                          "(guix scripts)"
+                          "(guix store)"
+                          "(guix ui)")
+  ;; Without this workaround, the warning/build output disappears.  See
+  ;; <https://github.com/jaor/geiser/issues/83> for details.
+  (guix-geiser-eval-in-repl-synchronously
+   "(begin
+      (guix-warning-port (current-warning-port))
+      (current-build-output-port (current-error-port)))"
+   repl 'no-history 'no-display))
+
+(defvar guix-devel-repl-processes nil
+  "List of REPL processes configured by `guix-devel-setup-repl'.")
+
+(defun guix-devel-setup-repl-maybe (&optional repl)
+  "Setup (if needed) REPL for using `guix-devel-...' commands."
+  (let ((process (get-buffer-process (or repl (guix-geiser-repl)))))
+    (when (and process
+               (not (memq process guix-devel-repl-processes)))
+      (guix-devel-setup-repl repl)
+      (push process guix-devel-repl-processes))))
+
+(defmacro guix-devel-with-definition (def-var &rest body)
+  "Run BODY with the current guile definition bound to DEF-VAR.
+Bind DEF-VAR variable to the name of the current top-level
+definition, setup the current REPL, use the current module, and
+run BODY."
+  (declare (indent 1) (debug (symbolp body)))
+  `(let ((,def-var (guix-guile-current-definition)))
+     (guix-devel-setup-repl-maybe)
+     (guix-devel-use-modules (guix-guile-current-module))
+     ,@body))
+
+(defun guix-devel-build-package-definition ()
+  "Build a package defined by the current top-level variable definition."
+  (interactive)
+  (guix-devel-with-definition def
+    (when (or (not guix-operation-confirm)
+              (guix-operation-prompt (format "Build '%s'?" def)))
+      (guix-geiser-eval-in-repl
+       (concat ",run-in-store "
+               (guix-guile-make-call-expression
+                "build-package" def
+                "#:use-substitutes?" (guix-guile-boolean
+                                      guix-use-substitutes)
+                "#:dry-run?" (guix-guile-boolean guix-dry-run)))))))
+
+(defun guix-devel-build-package-source ()
+  "Build the source of the current package definition."
+  (interactive)
+  (guix-devel-with-definition def
+    (when (or (not guix-operation-confirm)
+              (guix-operation-prompt
+               (format "Build '%s' package source?" def)))
+      (guix-geiser-eval-in-repl
+       (concat ",run-in-store "
+               (guix-guile-make-call-expression
+                "build-package-source" def
+                "#:use-substitutes?" (guix-guile-boolean
+                                      guix-use-substitutes)
+                "#:dry-run?" (guix-guile-boolean guix-dry-run)))))))
+
+(defun guix-devel-lint-package ()
+  "Check the current package.
+See Info node `(guix) Invoking guix lint' for details."
+  (interactive)
+  (guix-devel-with-definition def
+    (guix-devel-use-modules "(guix scripts lint)")
+    (when (or (not guix-operation-confirm)
+              (y-or-n-p (format "Lint '%s' package?" def)))
+      (guix-geiser-eval-in-repl
+       (format "(run-checkers %s)" def)))))
+
+
+;;; Font-lock
+
+(defvar guix-devel-modify-phases-keyword-regexp
+  (rx (+ word))
+  "Regexp for a 'modify-phases' keyword ('delete', 'replace', etc.).")
+
+(defun guix-devel-modify-phases-font-lock-matcher (limit)
+  "Find a 'modify-phases' keyword.
+This function is used as a MATCHER for `font-lock-keywords'."
+  (ignore-errors
+    (down-list)
+    (or (re-search-forward guix-devel-modify-phases-keyword-regexp
+                           limit t)
+        (set-match-data nil))
+    (up-list)
+    t))
+
+(defun guix-devel-modify-phases-font-lock-pre ()
+  "Skip the next sexp, and return the end point of the current list.
+This function is used as a PRE-MATCH-FORM for `font-lock-keywords'
+to find 'modify-phases' keywords."
+  (let ((in-comment? (nth 4 (syntax-ppss))))
+    ;; If 'modify-phases' is commented, do not try to search for its
+    ;; keywords.
+    (unless in-comment?
+      (ignore-errors (forward-sexp))
+      (save-excursion (up-list) (point)))))
+
+(defconst guix-devel-keywords
+  '("call-with-compressed-output-port"
+    "call-with-container"
+    "call-with-decompressed-port"
+    "call-with-derivation-narinfo"
+    "call-with-derivation-substitute"
+    "call-with-error-handling"
+    "call-with-temporary-directory"
+    "call-with-temporary-output-file"
+    "define-enumerate-type"
+    "define-gexp-compiler"
+    "define-lift"
+    "define-monad"
+    "define-operation"
+    "define-record-type*"
+    "emacs-substitute-sexps"
+    "emacs-substitute-variables"
+    "mbegin"
+    "mlet"
+    "mlet*"
+    "modify-services"
+    "munless"
+    "mwhen"
+    "run-with-state"
+    "run-with-store"
+    "signature-case"
+    "substitute*"
+    "substitute-keyword-arguments"
+    "test-assertm"
+    "use-package-modules"
+    "use-service-modules"
+    "use-system-modules"
+    "with-atomic-file-output"
+    "with-atomic-file-replacement"
+    "with-derivation-narinfo"
+    "with-derivation-substitute"
+    "with-directory-excursion"
+    "with-error-handling"
+    "with-monad"
+    "with-mutex"
+    "with-store"))
+
+(defvar guix-devel-font-lock-keywords
+  `((,(rx (or "#~" "#$" "#$@" "#+" "#+@")) .
+     'guix-devel-gexp-symbol)
+    (,(guix-guile-keyword-regexp (regexp-opt guix-devel-keywords))
+     (1 'font-lock-keyword-face))
+    (,(guix-guile-keyword-regexp "modify-phases")
+     (1 'font-lock-keyword-face)
+     (guix-devel-modify-phases-font-lock-matcher
+      (guix-devel-modify-phases-font-lock-pre)
+      nil
+      (0 'guix-devel-modify-phases-keyword nil t))))
+  "A list of `font-lock-keywords' for `guix-devel-mode'.")
+
+
+;;; Indentation
+
+(defmacro guix-devel-scheme-indent (&rest rules)
+  "Set `scheme-indent-function' according to RULES.
+Each rule should have a form (SYMBOL VALUE).  See `put' for details."
+  (declare (indent 0))
+  `(progn
+     ,@(mapcar (lambda (rule)
+                 `(put ',(car rule) 'scheme-indent-function ,(cadr rule)))
+               rules)))
+
+(defun guix-devel-indent-package (state indent-point normal-indent)
+  "Indentation rule for 'package' form."
+  (let* ((package-eol (line-end-position))
+         (count (if (and (ignore-errors (down-list) t)
+                         (< (point) package-eol)
+                         (looking-at "inherit\\>"))
+                    1
+                  0)))
+    (lisp-indent-specform count state indent-point normal-indent)))
+
+(defun guix-devel-indent-modify-phases-keyword (count)
+  "Return indentation function for 'modify-phases' keywords."
+  (lambda (state indent-point normal-indent)
+    (when (ignore-errors
+            (goto-char (nth 1 state))   ; start of keyword sexp
+            (backward-up-list)
+            (looking-at "(modify-phases\\>"))
+      (lisp-indent-specform count state indent-point normal-indent))))
+
+(defalias 'guix-devel-indent-modify-phases-keyword-1
+  (guix-devel-indent-modify-phases-keyword 1))
+(defalias 'guix-devel-indent-modify-phases-keyword-2
+  (guix-devel-indent-modify-phases-keyword 2))
+
+(guix-devel-scheme-indent
+  (bag 0)
+  (build-system 0)
+  (call-with-compressed-output-port 2)
+  (call-with-container 1)
+  (call-with-decompressed-port 2)
+  (call-with-error-handling 0)
+  (container-excursion 1)
+  (emacs-batch-edit-file 1)
+  (emacs-batch-eval 0)
+  (emacs-substitute-sexps 1)
+  (emacs-substitute-variables 1)
+  (file-system 0)
+  (graft 0)
+  (manifest-entry 0)
+  (manifest-pattern 0)
+  (mbegin 1)
+  (mlet 2)
+  (mlet* 2)
+  (modify-phases 1)
+  (modify-services 1)
+  (munless 1)
+  (mwhen 1)
+  (operating-system 0)
+  (origin 0)
+  (package 'guix-devel-indent-package)
+  (run-with-state 1)
+  (run-with-store 1)
+  (signature-case 1)
+  (substitute* 1)
+  (substitute-keyword-arguments 1)
+  (test-assertm 1)
+  (with-atomic-file-output 1)
+  (with-derivation-narinfo 1)
+  (with-derivation-substitute 2)
+  (with-directory-excursion 1)
+  (with-error-handling 0)
+  (with-monad 1)
+  (with-mutex 1)
+  (with-store 1)
+  (wrap-program 1)
+
+  ;; 'modify-phases' keywords:
+  (replace    'guix-devel-indent-modify-phases-keyword-1)
+  (add-after  'guix-devel-indent-modify-phases-keyword-2)
+  (add-before 'guix-devel-indent-modify-phases-keyword-2))
+
+
+(defvar guix-devel-keys-map
+  (let ((map (make-sparse-keymap)))
+    (define-key map (kbd "b") 'guix-devel-build-package-definition)
+    (define-key map (kbd "s") 'guix-devel-build-package-source)
+    (define-key map (kbd "l") 'guix-devel-lint-package)
+    (define-key map (kbd "k") 'guix-devel-copy-module-as-kill)
+    (define-key map (kbd "u") 'guix-devel-use-module)
+    map)
+  "Keymap with subkeys for `guix-devel-mode-map'.")
+
+(defvar guix-devel-mode-map
+  (let ((map (make-sparse-keymap)))
+    (define-key map (kbd "C-c .") guix-devel-keys-map)
+    map)
+  "Keymap for `guix-devel-mode'.")
+
+;;;###autoload
+(define-minor-mode guix-devel-mode
+  "Minor mode for `scheme-mode' buffers.
+
+With a prefix argument ARG, enable the mode if ARG is positive,
+and disable it otherwise.  If called from Lisp, enable the mode
+if ARG is omitted or nil.
+
+When Guix Devel mode is enabled, it provides the following key
+bindings:
+
+\\{guix-devel-mode-map}"
+  :init-value nil
+  :lighter " Guix"
+  :keymap guix-devel-mode-map
+  (if guix-devel-mode
+      (progn
+        (setq-local font-lock-multiline t)
+        (font-lock-add-keywords nil guix-devel-font-lock-keywords))
+    (setq-local font-lock-multiline nil)
+    (font-lock-remove-keywords nil guix-devel-font-lock-keywords))
+  (when font-lock-mode
+    (font-lock-fontify-buffer)))
+
+;;;###autoload
+(defun guix-devel-activate-mode-maybe ()
+  "Activate `guix-devel-mode' depending on
+`guix-devel-activate-mode' variable."
+  (when guix-devel-activate-mode
+    (guix-devel-mode)))
+
+
+(defvar guix-devel-emacs-font-lock-keywords
+  (eval-when-compile
+    `((,(rx "(" (group "guix-devel-with-definition") symbol-end) . 1))))
+
+(font-lock-add-keywords 'emacs-lisp-mode
+                        guix-devel-emacs-font-lock-keywords)
+
+(provide 'guix-devel)
+
+;;; guix-devel.el ends here

emacs/guix-external.el

@@ -0,0 +1,88 @@
+;;; guix-external.el --- External programs  -*- lexical-binding: t -*-
+
+;; Copyright © 2015 Alex Kost <alezost@gmail.com>
+
+;; This file is part of GNU Guix.
+
+;; GNU Guix is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; GNU Guix is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+;;; Commentary:
+
+;; This file provides auxiliary code for running external programs.
+
+;;; Code:
+
+(require 'guix-config)
+
+(defgroup guix-external nil
+  "Settings for external programs."
+  :group 'guix)
+
+(defcustom guix-guile-program guix-config-guile-program
+  "Name of the 'guile' executable used for Guix REPL.
+May be either a string (the name of the executable) or a list of
+strings of the form:
+
+  (NAME . ARGS)
+
+Where ARGS is a list of arguments to the guile program."
+  :type 'string
+  :group 'guix-external)
+
+(defcustom guix-dot-program
+  (if (file-name-absolute-p guix-config-dot-program)
+      guix-config-dot-program
+    (executable-find "dot"))
+  "Name of the 'dot' executable."
+  :type 'string
+  :group 'guix-external)
+
+(defcustom guix-dot-default-arguments
+  '("-Tpng")
+  "Default arguments for 'dot' program."
+  :type '(repeat string)
+  :group 'guix-external)
+
+(defcustom guix-dot-file-name-function #'guix-png-file-name
+  "Function used to define a file name of a temporary 'dot' file.
+The function is called without arguments."
+  :type '(choice (function-item guix-png-file-name)
+                 (function :tag "Other function"))
+  :group 'guix-external)
+
+(defun guix-dot-arguments (output-file &rest args)
+  "Return a list of dot arguments for writing a graph into OUTPUT-FILE.
+If ARGS is nil, use `guix-dot-default-arguments'."
+  (or guix-dot-program
+      (error (concat "Couldn't find 'dot'.\n"
+                     "Set guix-dot-program to a proper value")))
+  (apply #'list
+         guix-dot-program
+         (concat "-o" output-file)
+         (or args guix-dot-default-arguments)))
+
+(defun guix-dot-file-name ()
+  "Call `guix-dot-file-name-function'."
+  (funcall guix-dot-file-name-function))
+
+(defun guix-png-file-name ()
+  "Return '.png' file name in the `temporary-file-directory'."
+  (concat (make-temp-name
+           (concat (file-name-as-directory temporary-file-directory)
+                   "guix-emacs-graph-"))
+          ".png"))
+
+(provide 'guix-external)
+
+;;; guix-external.el ends here

emacs/guix-geiser.el

@@ -0,0 +1,114 @@
+;;; guix-geiser.el --- Interacting with Geiser   -*- lexical-binding: t -*-
+
+;; Copyright © 2015 Alex Kost <alezost@gmail.com>
+
+;; This file is part of GNU Guix.
+
+;; GNU Guix is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; GNU Guix is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+;;; Commentary:
+
+;; This file provides functions to evaluate guile code using Geiser.
+
+;;; Code:
+
+(require 'geiser-mode)
+(require 'guix-guile)
+
+(defun guix-geiser-repl ()
+  "Return the current Geiser REPL."
+  (or geiser-repl--repl
+      (geiser-repl--repl/impl 'guile)
+      (error "Geiser REPL not found")))
+
+(defun guix-geiser-eval (str &optional repl)
+  "Evaluate STR with guile expression using Geiser REPL.
+If REPL is nil, use the current Geiser REPL.
+Return a list of strings with result values of evaluation."
+  (with-current-buffer (or repl (guix-geiser-repl))
+    (let ((res (geiser-eval--send/wait `(:eval (:scm ,str)))))
+      (if (geiser-eval--retort-error res)
+          (error "Error in evaluating guile expression: %s"
+                 (geiser-eval--retort-output res))
+        (cdr (assq 'result res))))))
+
+(defun guix-geiser-eval-read (str &optional repl)
+  "Evaluate STR with guile expression using Geiser REPL.
+Return elisp expression of the first result value of evaluation."
+  ;; Parsing scheme code with elisp `read' is probably not the best idea.
+  (read (replace-regexp-in-string
+         "#f\\|#<unspecified>" "nil"
+         (replace-regexp-in-string
+          "#t" "t" (car (guix-geiser-eval str repl))))))
+
+(defun guix-repl-send (cmd &optional save-history)
+  "Send CMD input string to the current REPL buffer.
+This is the same as `geiser-repl--send', but with SAVE-HISTORY
+argument.  If SAVE-HISTORY is non-nil, save CMD in the REPL
+history."
+  (when (and cmd (eq major-mode 'geiser-repl-mode))
+    (geiser-repl--prepare-send)
+    (goto-char (point-max))
+    (comint-kill-input)
+    (insert cmd)
+    (let ((comint-input-filter (if save-history
+                                   comint-input-filter
+                                 'ignore)))
+      (comint-send-input nil t))))
+
+(defun guix-geiser-eval-in-repl (str &optional repl no-history no-display)
+  "Switch to Geiser REPL and evaluate STR with guile expression there.
+If NO-HISTORY is non-nil, do not save STR in the REPL history.
+If NO-DISPLAY is non-nil, do not switch to the REPL buffer."
+  (let ((repl (or repl (guix-geiser-repl))))
+    (with-current-buffer repl
+      ;; XXX Since Geiser 0.8, `geiser-repl--send' has SAVE-HISTORY
+      ;; argument, so use this function eventually and remove
+      ;; `guix-repl-send'.
+      (guix-repl-send str (not no-history)))
+    (unless no-display
+      (geiser-repl--switch-to-buffer repl))))
+
+(defun guix-geiser-eval-in-repl-synchronously (str &optional repl
+                                                   no-history no-display)
+  "Evaluate STR in Geiser REPL synchronously, i.e. wait until the
+REPL operation will be finished.
+See `guix-geiser-eval-in-repl' for the meaning of arguments."
+  (let* ((repl (if repl (get-buffer repl) (guix-geiser-repl)))
+         (running? nil)
+         (filter (lambda (output)
+                   (setq running?
+                         (and (get-buffer-process repl)
+                              (not (guix-guile-prompt? output))))))
+         (comint-output-filter-functions
+          (cons filter comint-output-filter-functions)))
+    (guix-geiser-eval-in-repl str repl no-history no-display)
+    (while running?
+      (sleep-for 0.1))))
+
+(defun guix-geiser-call (proc &rest args)
+  "Call (PROC ARGS ...) synchronously using the current Geiser REPL.
+PROC and ARGS should be strings."
+  (guix-geiser-eval
+   (apply #'guix-guile-make-call-expression proc args)))
+
+(defun guix-geiser-call-in-repl (proc &rest args)
+  "Call (PROC ARGS ...) in the current Geiser REPL.
+PROC and ARGS should be strings."
+  (guix-geiser-eval-in-repl
+   (apply #'guix-guile-make-call-expression proc args)))
+
+(provide 'guix-geiser)
+
+;;; guix-geiser.el ends here

emacs/guix-guile.el

@@ -0,0 +1,98 @@
+;;; guix-guile.el --- Auxiliary tools for working with guile code   -*- lexical-binding: t -*-
+
+;; Copyright © 2015 Alex Kost <alezost@gmail.com>
+
+;; This file is part of GNU Guix.
+
+;; GNU Guix is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; GNU Guix is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+;;; Commentary:
+
+;; This file provides functions for parsing guile code, making guile
+;; expressions, etc.
+
+;;; Code:
+
+(require 'geiser-guile)
+
+(defvar guix-guile-definition-regexp
+  (rx bol "(define"
+      (zero-or-one "*")
+      (zero-or-one "-public")
+      (one-or-more space)
+      (zero-or-one "(")
+      (group (one-or-more (or word (syntax symbol)))))
+  "Regexp used to find the guile definition.")
+
+(defun guix-guile-current-definition ()
+  "Return string with name of the current top-level guile definition."
+  (save-excursion
+    (beginning-of-defun)
+    (if (looking-at guix-guile-definition-regexp)
+        (match-string-no-properties 1)
+      (error "Couldn't find the current definition"))))
+
+(defun guix-guile-current-module ()
+  "Return a string with the current guile module.
+Return nil, if current buffer does not define a module."
+  ;; Modified version of `geiser-guile--get-module'.
+  (save-excursion
+    (geiser-syntax--pop-to-top)
+    (when (or (re-search-backward geiser-guile--module-re nil t)
+              (looking-at geiser-guile--library-re)
+              (re-search-forward geiser-guile--module-re nil t))
+      (match-string-no-properties 1))))
+
+(defun guix-guile-boolean (arg)
+  "Return a string with guile boolean value.
+Transform elisp ARG (nil or non-nil) to the guile boolean (#f or #t)."
+  (concat "#" (prin1-to-string (if arg 't 'f))))
+
+(defun guix-guile-keyword-regexp (keyword)
+  "Return regexp to find guile KEYWORD."
+  (format "(\\(%s\\)\\_>" keyword))
+
+(defun guix-guile-make-call-expression (proc &rest args)
+  "Return \"(PROC ARGS ...)\" string.
+PROC and ARGS should be strings."
+  (format "(%s %s)"
+          proc
+          (mapconcat #'identity args " ")))
+
+(defun guix-make-guile-expression (fun &rest args)
+  "Return string containing a guile expression for calling FUN with ARGS."
+  (format "(%S %s)" fun
+          (mapconcat
+           (lambda (arg)
+             (cond
+              ((null arg) "'()")
+              ((or (eq arg t)
+                   ;; An ugly hack to separate 'false' from nil.
+                   (equal arg 'f)
+                   (keywordp arg))
+               (concat "#" (prin1-to-string arg t)))
+              ((or (symbolp arg) (listp arg))
+               (concat "'" (prin1-to-string arg)))
+              (t (prin1-to-string arg))))
+           args
+           " ")))
+
+(defun guix-guile-prompt? (string)
+  "Return non-nil, if STRING contains a Guile prompt."
+  (or (string-match-p geiser-guile--prompt-regexp string)
+      (string-match-p geiser-guile--debugger-prompt-regexp string)))
+
+(provide 'guix-guile)
+
+;;; guix-guile.el ends here

emacs/guix-help-vars.el

@@ -0,0 +1,108 @@
+;;; guix-help-vars.el --- Variables related to --help output
+
+;; Copyright © 2015 Alex Kost <alezost@gmail.com>
+
+;; This file is part of GNU Guix.
+
+;; GNU Guix is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; GNU Guix is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+;;; Commentary:
+
+;; This file provides regular expressions to parse various "guix
+;; ... --help" outputs and lists of non-receivable items (system types,
+;; hash formats, etc.).
+
+;;; Code:
+
+
+;;; Regexps for parsing "guix ..." outputs
+
+(defvar guix-help-parse-option-regexp
+  (rx bol "  "
+      (zero-or-one (group "-" (not (any "- ")))
+                   ",")
+      (one-or-more " ")
+      (group "--" (one-or-more (or wordchar "-")))
+      (group (zero-or-one "[")
+             (zero-or-one "="))
+      (zero-or-more (not space))
+      (one-or-more space)
+      (group (one-or-more any)))
+  "Common regexp used to find command options.")
+
+(defvar guix-help-parse-command-regexp
+  (rx bol "   "
+      (group wordchar (one-or-more (or wordchar "-"))))
+  "Regexp used to find guix commands.
+'Command' means any option not prefixed with '-'.  For example,
+guix subcommand, system action, importer, etc.")
+
+(defvar guix-help-parse-long-option-regexp
+  (rx (or "  " ", ")
+      (group "--" (one-or-more (or wordchar "-"))
+             (zero-or-one "=")))
+  "Regexp used to find long options.")
+
+(defvar guix-help-parse-short-option-regexp
+  (rx bol (one-or-more blank)
+      "-" (group (not (any "- "))))
+  "Regexp used to find short options.")
+
+(defvar guix-help-parse-package-regexp
+  (rx bol (group (one-or-more (not blank))))
+  "Regexp used to find names of the packages.")
+
+(defvar guix-help-parse-list-regexp
+  (rx bol (zero-or-more blank) "- "
+      (group (one-or-more (or wordchar "-"))))
+  "Regexp used to find various lists (lint checkers, graph types).")
+
+(defvar guix-help-parse-regexp-group 1
+  "Parenthesized expression of regexps used to find commands and
+options.")
+
+
+;;; Non-receivable lists of system types, hash formats, etc.
+
+(defvar guix-help-system-types
+  '("x86_64-linux" "i686-linux" "armhf-linux" "mips64el-linux")
+  "List of supported systems.")
+
+(defvar guix-help-source-types
+  '("package" "all" "transitive")
+  "List of supported sources types.")
+
+(defvar guix-help-hash-formats
+  '("nix-base32" "base32" "base16" "hex" "hexadecimal")
+  "List of supported hash formats.")
+
+(defvar guix-help-refresh-subsets
+  '("core" "non-core")
+  "List of supported 'refresh' subsets.")
+
+(defvar guix-help-key-policies
+  '("interactive" "always" "never")
+  "List of supported key download policies.")
+
+(defvar guix-help-verify-options
+  '("repair" "contents")
+  "List of supported 'verify' options")
+
+(defvar guix-help-elpa-archives
+  '("gnu" "melpa" "melpa-stable")
+  "List of supported ELPA archives.")
+
+(provide 'guix-help-vars)
+
+;;; guix-help-vars.el ends here

emacs/guix-info.el

@@ -33,25 +33,30 @@
   :prefix "guix-info-"
   :group 'guix)
 
+(defgroup guix-info-faces nil
+  "Faces for info buffers."
+  :group 'guix-info
+  :group 'guix-faces)
+
 (defface guix-info-param-title
   '((t :inherit font-lock-type-face))
   "Face used for titles of parameters."
-  :group 'guix-info)
+  :group 'guix-info-faces)
 
 (defface guix-info-file-path
   '((t :inherit link))
   "Face used for file paths."
-  :group 'guix-info)
+  :group 'guix-info-faces)
 
 (defface guix-info-url
   '((t :inherit link))
   "Face used for URLs."
-  :group 'guix-info)
+  :group 'guix-info-faces)
 
 (defface guix-info-time
   '((t :inherit font-lock-constant-face))
   "Face used for timestamps."
-  :group 'guix-info)
+  :group 'guix-info-faces)
 
 (defface guix-info-action-button
   '((((type x w32 ns) (class color))
@@ -59,7 +64,7 @@
      :background "lightgrey" :foreground "black")
     (t :inherit button))
   "Face used for action buttons."
-  :group 'guix-info)
+  :group 'guix-info-faces)
 
 (defface guix-info-action-button-mouse
   '((((type x w32 ns) (class color))
@@ -67,7 +72,7 @@
      :background "grey90" :foreground "black")
     (t :inherit highlight))
   "Mouse face used for action buttons."
-  :group 'guix-info)
+  :group 'guix-info-faces)
 
 (defcustom guix-info-ignore-empty-vals nil
   "If non-nil, do not display parameters with nil values."
@@ -178,13 +183,13 @@ The order of displayed parameters is the same as in this list.")
 (defun guix-info-get-insert-methods (entry-type param)
   "Return list of insert methods for parameter PARAM of ENTRY-TYPE.
 See `guix-info-insert-methods' for details."
-  (guix-get-key-val guix-info-insert-methods
-                    entry-type param))
+  (guix-assq-value guix-info-insert-methods
+                   entry-type param))
 
 (defun guix-info-get-displayed-params (entry-type)
   "Return parameters of ENTRY-TYPE that should be displayed."
-  (guix-get-key-val guix-info-displayed-params
-                    entry-type))
+  (guix-assq-value guix-info-displayed-params
+                   entry-type))
 
 (defun guix-info-get-indent (&optional level)
   "Return `guix-info-indent' \"multiplied\" by LEVEL spaces.
@@ -232,7 +237,7 @@ Use `guix-info-insert-ENTRY-TYPE-function' or
   "Insert title and value of a PARAM at point.
 ENTRY is alist with parameters and their values.
 ENTRY-TYPE is a type of ENTRY."
-  (let ((val (guix-get-key-val entry param)))
+  (let ((val (guix-assq-value entry param)))
     (unless (and guix-info-ignore-empty-vals (null val))
       (let* ((title          (guix-get-param-title entry-type param))
              (insert-methods (guix-info-get-insert-methods entry-type param))
@@ -414,43 +419,43 @@ See `insert-text-button' for the meaning of PROPERTIES."
   '((((type tty pc) (class color)) :weight bold)
     (t :height 1.6 :weight bold :inherit variable-pitch))
   "Face for package name and version headings."
-  :group 'guix-package-info)
+  :group 'guix-package-info-faces)
 
 (defface guix-package-info-name
   '((t :inherit font-lock-keyword-face))
   "Face used for a name of a package."
-  :group 'guix-package-info)
+  :group 'guix-package-info-faces)
 
 (defface guix-package-info-name-button
   '((t :inherit button))
   "Face used for a full name that can be used to describe a package."
-  :group 'guix-package-info)
+  :group 'guix-package-info-faces)
 
 (defface guix-package-info-version
   '((t :inherit font-lock-builtin-face))
   "Face used for a version of a package."
-  :group 'guix-package-info)
+  :group 'guix-package-info-faces)
 
 (defface guix-package-info-synopsis
   '((((type tty pc) (class color)) :weight bold)
     (t :height 1.1 :weight bold :inherit variable-pitch))
   "Face used for a synopsis of a package."
-  :group 'guix-package-info)
+  :group 'guix-package-info-faces)
 
 (defface guix-package-info-description
   '((t))
   "Face used for a description of a package."
-  :group 'guix-package-info)
+  :group 'guix-package-info-faces)
 
 (defface guix-package-info-license
   '((t :inherit font-lock-string-face))
   "Face used for a license of a package."
-  :group 'guix-package-info)
+  :group 'guix-package-info-faces)
 
 (defface guix-package-info-location
   '((t :inherit link))
   "Face used for a location of a package."
-  :group 'guix-package-info)
+  :group 'guix-package-info-faces)
 
 (defface guix-package-info-installed-outputs
   '((default :weight bold)
@@ -462,17 +467,17 @@ See `insert-text-button' for the meaning of PROPERTIES."
      :foreground "green")
     (t :underline t))
   "Face used for installed outputs of a package."
-  :group 'guix-package-info)
+  :group 'guix-package-info-faces)
 
 (defface guix-package-info-uninstalled-outputs
   '((t :weight bold))
   "Face used for uninstalled outputs of a package."
-  :group 'guix-package-info)
+  :group 'guix-package-info-faces)
 
 (defface guix-package-info-obsolete
   '((t :inherit error))
   "Face used if a package is obsolete."
-  :group 'guix-package-info)
+  :group 'guix-package-info-faces)
 
 (defvar guix-info-insert-package-function
   #'guix-package-info-insert-with-heading
@@ -492,12 +497,12 @@ filling them to fit the window."
 (defun guix-package-info-insert-heading (entry)
   "Insert the heading for package ENTRY.
 Show package name, version, and `guix-package-info-heading-params'."
-  (guix-format-insert (concat (guix-get-key-val entry 'name) " "
-                              (guix-get-key-val entry 'version))
+  (guix-format-insert (concat (guix-assq-value entry 'name) " "
+                              (guix-assq-value entry 'version))
                       'guix-package-info-heading)
   (insert "\n\n")
   (mapc (lambda (param)
-          (let ((val  (guix-get-key-val entry param))
+          (let ((val  (guix-assq-value entry param))
                 (face (guix-get-symbol (symbol-name param)
                                        'info 'package)))
             (when val
@@ -541,7 +546,7 @@ Face name is `guix-package-info-TYPE-inputs'."
        (defface ,face
          '((t :inherit guix-package-info-name-button))
          ,(concat "Face used for " type-desc "inputs of a package.")
-         :group 'guix-package-info)
+         :group 'guix-package-info-faces)
 
        (define-button-type ',btn
          :supertype 'guix-package-name
@@ -587,10 +592,10 @@ If nil, insert installed info in a default way.")
 
 (defun guix-package-info-insert-outputs (outputs entry)
   "Insert OUTPUTS from package ENTRY at point."
-  (and (guix-get-key-val entry 'obsolete)
+  (and (guix-assq-value entry 'obsolete)
        (guix-package-info-insert-obsolete-text))
-  (and (guix-get-key-val entry 'non-unique)
-       (guix-get-key-val entry 'installed)
+  (and (guix-assq-value entry 'non-unique)
+       (guix-assq-value entry 'installed)
        (guix-package-info-insert-non-unique-text
         (guix-get-full-name entry)))
   (insert "\n")
@@ -617,11 +622,11 @@ If nil, insert installed info in a default way.")
 Make some fancy text with buttons and additional stuff if the
 current OUTPUT is installed (if there is such output in
 `installed' parameter of a package ENTRY)."
-  (let* ((installed (guix-get-key-val entry 'installed))
-         (obsolete  (guix-get-key-val entry 'obsolete))
+  (let* ((installed (guix-assq-value entry 'installed))
+         (obsolete  (guix-assq-value entry 'obsolete))
          (installed-entry (cl-find-if
                            (lambda (entry)
-                             (string= (guix-get-key-val entry 'output)
+                             (string= (guix-assq-value entry 'output)
                                       output))
                            installed))
          (action-type (if installed-entry 'delete 'install)))
@@ -655,8 +660,8 @@ ENTRY is an alist with package info."
         (current-buffer)))
      (concat type-str " '" full-name "'")
      'action-type type
-     'id (or (guix-get-key-val entry 'package-id)
-             (guix-get-key-val entry 'id))
+     'id (or (guix-assq-value entry 'package-id)
+             (guix-assq-value entry 'id))
      'output output)))
 
 (defun guix-package-info-insert-output-path (path &optional _)
@@ -672,7 +677,7 @@ ENTRY is an alist with package info."
 (defface guix-package-info-source
   '((t :inherit link :underline nil))
   "Face used for a source URL of a package."
-  :group 'guix-package-info)
+  :group 'guix-package-info-faces)
 
 (defcustom guix-package-info-auto-find-source nil
   "If non-nil, find a source file after pressing a \"Show\" button.
@@ -720,7 +725,7 @@ PACKAGE-ID is an ID of the package which source to show."
            (entries (cl-substitute-if
                      new-entry
                      (lambda (entry)
-                       (equal (guix-get-key-val entry 'id)
+                       (equal (guix-assq-value entry 'id)
                               entry-id))
                      guix-entries
                      :count 1)))
@@ -746,9 +751,9 @@ SOURCE is a list of URLs."
   (guix-info-insert-indent)
   (if (null source)
       (guix-format-insert nil)
-    (let* ((source-file (guix-get-key-val entry 'source-file))
-           (entry-id    (guix-get-key-val entry 'id))
-           (package-id  (or (guix-get-key-val entry 'package-id)
+    (let* ((source-file (guix-assq-value entry 'source-file))
+           (entry-id    (guix-assq-value entry 'id))
+           (package-id  (or (guix-assq-value entry 'package-id)
                             entry-id)))
       (if (null source-file)
           (guix-info-insert-action-button
@@ -798,13 +803,13 @@ If nil, insert output in a default way.")
   "Insert output VERSION and obsolete text if needed at point."
   (guix-info-insert-val-default version
                                 'guix-package-info-version)
-  (and (guix-get-key-val entry 'obsolete)
+  (and (guix-assq-value entry 'obsolete)
        (guix-package-info-insert-obsolete-text)))
 
 (defun guix-output-info-insert-output (output entry)
   "Insert OUTPUT and action buttons at point."
-  (let* ((installed (guix-get-key-val entry 'installed))
-         (obsolete  (guix-get-key-val entry 'obsolete))
+  (let* ((installed (guix-assq-value entry 'installed))
+         (obsolete  (guix-assq-value entry 'obsolete))
          (action-type (if installed 'delete 'install)))
     (guix-info-insert-val-default
      output
@@ -825,17 +830,17 @@ If nil, insert output in a default way.")
 (defface guix-generation-info-number
   '((t :inherit font-lock-keyword-face))
   "Face used for a number of a generation."
-  :group 'guix-generation-info)
+  :group 'guix-generation-info-faces)
 
 (defface guix-generation-info-current
   '((t :inherit guix-package-info-installed-outputs))
   "Face used if a generation is the current one."
-  :group 'guix-generation-info)
+  :group 'guix-generation-info-faces)
 
 (defface guix-generation-info-not-current
   '((t nil))
   "Face used if a generation is not the current one."
-  :group 'guix-generation-info)
+  :group 'guix-generation-info-faces)
 
 (defvar guix-info-insert-generation-function nil
   "Function used to insert a generation information.
@@ -874,7 +879,7 @@ If nil, insert generation in a default way.")
        (guix-switch-to-generation guix-profile (button-get btn 'number)
                                   (current-buffer)))
      "Switch to this generation (make it the current one)"
-     'number (guix-get-key-val entry 'number))))
+     'number (guix-assq-value entry 'number))))
 
 (provide 'guix-info)
 

emacs/guix-init.el

@@ -1,8 +1,5 @@
 (require 'guix-autoloads)
-
-(defvar guix-load-path
-  (replace-regexp-in-string "${prefix}" "@prefix@" "@emacsuidir@")
-  "Directory with scheme files for \"guix.el\" package.")
+(require 'guix-emacs)
 
 (defcustom guix-package-enable-at-startup t
   "If non-nil, activate Emacs packages installed in a user profile.
@@ -12,8 +9,12 @@ avoid loading autoloads of Emacs packages installed in
   :type 'boolean
   :group 'guix)
 
+(add-to-list 'load-path (guix-emacs-directory))
+
 (when guix-package-enable-at-startup
-  (require 'guix-emacs)
   (guix-emacs-load-autoloads 'all))
 
+(add-hook 'scheme-mode-hook 'guix-devel-activate-mode-maybe)
+(add-hook 'shell-mode-hook 'guix-build-log-minor-mode-activate-maybe)
+
 (provide 'guix-init)

emacs/guix-list.el

@@ -1,6 +1,6 @@
 ;;; guix-list.el --- List buffers for displaying entries   -*- lexical-binding: t -*-
 
-;; Copyright © 2014 Alex Kost <alezost@gmail.com>
+;; Copyright © 2014, 2015 Alex Kost <alezost@gmail.com>
 
 ;; This file is part of GNU Guix.
 
@@ -35,10 +35,15 @@
   :prefix "guix-list-"
   :group 'guix)
 
+(defgroup guix-list-faces nil
+  "Faces for list buffers."
+  :group 'guix-list
+  :group 'guix-faces)
+
 (defface guix-list-file-path
   '((t :inherit guix-info-file-path))
   "Face used for file paths."
-  :group 'guix-list)
+  :group 'guix-list-faces)
 
 (defcustom guix-list-describe-warning-count 10
   "The maximum number of entries for describing without a warning.
@@ -110,13 +115,13 @@ parameters and their values).")
 
 (defun guix-list-get-param-title (entry-type param)
   "Return title of an ENTRY-TYPE entry parameter PARAM."
-  (or (guix-get-key-val guix-list-column-titles
-                        entry-type param)
+  (or (guix-assq-value guix-list-column-titles
+                       entry-type param)
       (guix-get-param-title entry-type param)))
 
 (defun guix-list-get-column-format (entry-type)
   "Return column format for ENTRY-TYPE."
-  (guix-get-key-val guix-list-column-format entry-type))
+  (guix-assq-value guix-list-column-format entry-type))
 
 (defun guix-list-get-displayed-params (entry-type)
   "Return list of parameters of ENTRY-TYPE that should be displayed."
@@ -170,7 +175,7 @@ ENTRIES should have a form of `guix-entries'."
 Values are taken from ENTRIES which should have the form of
 `guix-entries'."
   (mapcar (lambda (entry)
-            (list (guix-get-key-val entry 'id)
+            (list (guix-assq-value entry 'id)
                   (guix-list-get-tabulated-entry entry entry-type)))
           entries))
 
@@ -180,9 +185,9 @@ Parameters are taken from ENTRY of ENTRY-TYPE."
   (guix-list-make-tabulated-vector
    entry-type
    (lambda (param _)
-     (let ((val (guix-get-key-val entry param))
-           (fun (guix-get-key-val guix-list-column-value-methods
-                                  entry-type param)))
+     (let ((val (guix-assq-value entry param))
+           (fun (guix-assq-value guix-list-column-value-methods
+                                 entry-type param)))
        (if fun
            (funcall fun val entry)
          (guix-get-string val))))))
@@ -221,7 +226,7 @@ VAL may be nil."
     (guix-package-list-mode
      (guix-list-current-id))
     (guix-output-list-mode
-     (guix-get-key-val (guix-list-current-entry) 'package-id))))
+     (guix-assq-value (guix-list-current-entry) 'package-id))))
 
 (defun guix-list-for-each-line (fun &rest args)
   "Call FUN with ARGS for each entry line."
@@ -262,7 +267,7 @@ ARGS is a list of additional values.")
 
 (defsubst guix-list-get-mark (name)
   "Return mark character by its NAME."
-  (or (guix-get-key-val guix-list-mark-alist name)
+  (or (guix-assq-value guix-list-mark-alist name)
       (error "Mark '%S' not found" name)))
 
 (defsubst guix-list-get-mark-string (name)
@@ -355,8 +360,8 @@ With ARG, unmark all lines."
   "Put marks according to `guix-list-mark-alist'."
   (guix-list-for-each-line
    (lambda ()
-     (let ((mark-name (car (guix-get-key-val guix-list-marked
-                                             (guix-list-current-id)))))
+     (let ((mark-name (car (guix-assq-value guix-list-marked
+                                            (guix-list-current-id)))))
        (tabulated-list-put-tag
         (guix-list-get-mark-string (or mark-name 'empty)))))))
 
@@ -472,7 +477,7 @@ With prefix (if ARG is non-nil), describe entries marked with any mark."
 (defun guix-list-edit-package ()
   "Go to the location of the current package."
   (interactive)
-  (guix-edit-package (guix-list-current-package-id)))
+  (guix-edit (guix-list-current-package-id)))
 
 
 ;;; Displaying packages
@@ -488,12 +493,12 @@ With prefix (if ARG is non-nil), describe entries marked with any mark."
 (defface guix-package-list-installed
   '((t :inherit guix-package-info-installed-outputs))
   "Face used if there are installed outputs for the current package."
-  :group 'guix-package-list)
+  :group 'guix-package-list-faces)
 
 (defface guix-package-list-obsolete
   '((t :inherit guix-package-info-obsolete))
   "Face used if a package is obsolete."
-  :group 'guix-package-list)
+  :group 'guix-package-list-faces)
 
 (defcustom guix-package-list-generation-marking-enabled nil
   "If non-nil, allow putting marks in a list with 'generation packages'.
@@ -524,16 +529,16 @@ likely)."
 Colorize it with `guix-package-list-installed' or
 `guix-package-list-obsolete' if needed."
   (guix-get-string name
-                   (cond ((guix-get-key-val entry 'obsolete)
+                   (cond ((guix-assq-value entry 'obsolete)
                           'guix-package-list-obsolete)
-                         ((guix-get-key-val entry 'installed)
+                         ((guix-assq-value entry 'installed)
                           'guix-package-list-installed))))
 
 (defun guix-package-list-get-installed-outputs (installed &optional _)
   "Return string with outputs from INSTALLED entries."
   (guix-get-string
    (mapcar (lambda (entry)
-             (guix-get-key-val entry 'output))
+             (guix-assq-value entry 'output))
            installed)))
 
 (defun guix-package-list-marking-check ()
@@ -562,7 +567,7 @@ be separated with \",\")."
   (interactive "P")
   (guix-package-list-marking-check)
   (let* ((entry     (guix-list-current-entry))
-         (all       (guix-get-key-val entry 'outputs))
+         (all       (guix-assq-value entry 'outputs))
          (installed (guix-get-installed-outputs entry))
          (available (cl-set-difference all installed :test #'string=)))
     (or available
@@ -597,7 +602,7 @@ be separated with \",\")."
          (installed (guix-get-installed-outputs entry)))
     (or installed
         (user-error "This package is not installed"))
-    (when (or (guix-get-key-val entry 'obsolete)
+    (when (or (guix-assq-value entry 'obsolete)
               (y-or-n-p "This package is not obsolete.  Try to upgrade it anyway? "))
       (guix-package-list-mark-outputs
        'upgrade installed
@@ -611,14 +616,14 @@ accept an entry as argument."
   (guix-package-list-marking-check)
   (let ((obsolete (cl-remove-if-not
                    (lambda (entry)
-                     (guix-get-key-val entry 'obsolete))
+                     (guix-assq-value entry 'obsolete))
                    guix-entries)))
     (guix-list-for-each-line
      (lambda ()
        (let* ((id (guix-list-current-id))
               (entry (cl-find-if
                       (lambda (entry)
-                        (equal id (guix-get-key-val entry 'id)))
+                        (equal id (guix-assq-value entry 'id)))
                       obsolete)))
          (when entry
            (funcall fun entry)))))))
@@ -682,7 +687,7 @@ The specification is suitable for `guix-process-package-actions'."
   (interactive)
   (guix-package-list-marking-check)
   (let* ((entry     (guix-list-current-entry))
-         (installed (guix-get-key-val entry 'installed)))
+         (installed (guix-assq-value entry 'installed)))
     (if installed
         (user-error "This output is already installed")
       (guix-list--mark 'install t))))
@@ -692,7 +697,7 @@ The specification is suitable for `guix-process-package-actions'."
   (interactive)
   (guix-package-list-marking-check)
   (let* ((entry     (guix-list-current-entry))
-         (installed (guix-get-key-val entry 'installed)))
+         (installed (guix-assq-value entry 'installed)))
     (if installed
         (guix-list--mark 'delete t)
       (user-error "This output is not installed"))))
@@ -702,10 +707,10 @@ The specification is suitable for `guix-process-package-actions'."
   (interactive)
   (guix-package-list-marking-check)
   (let* ((entry     (guix-list-current-entry))
-         (installed (guix-get-key-val entry 'installed)))
+         (installed (guix-assq-value entry 'installed)))
     (or installed
         (user-error "This output is not installed"))
-    (when (or (guix-get-key-val entry 'obsolete)
+    (when (or (guix-assq-value entry 'obsolete)
               (y-or-n-p "This output is not obsolete.  Try to upgrade it anyway? "))
       (guix-list--mark 'upgrade t))))
 
@@ -777,8 +782,8 @@ VAL is a boolean value."
   "Switch current profile to the generation at point."
   (interactive)
   (let* ((entry   (guix-list-current-entry))
-         (current (guix-get-key-val entry 'current))
-         (number  (guix-get-key-val entry 'number)))
+         (current (guix-assq-value entry 'current))
+         (number  (guix-assq-value entry 'number)))
     (if current
         (user-error "This generation is already the current one")
       (guix-switch-to-generation guix-profile number (current-buffer)))))

emacs/guix-main.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014 Alex Kost <alezost@gmail.com>
+;;; Copyright © 2014, 2015 Alex Kost <alezost@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -45,6 +45,7 @@
 (use-modules
  (ice-9 vlist)
  (ice-9 match)
+ (ice-9 popen)
  (srfi srfi-1)
  (srfi srfi-2)
  (srfi srfi-11)
@@ -57,6 +58,8 @@
  (guix licenses)
  (guix utils)
  (guix ui)
+ (guix scripts graph)
+ (guix scripts lint)
  (guix scripts package)
  (guix scripts pull)
  (gnu packages))
@@ -68,7 +71,26 @@
 (define (list-maybe obj)
   (if (list? obj) obj (list obj)))
 
-(define full-name->name+version package-name->name+version)
+(define (output+error thunk)
+  "Call THUNK and return 2 values: output and error output as strings."
+  (let ((output-port (open-output-string))
+        (error-port  (open-output-string)))
+    (with-output-to-port output-port
+      (lambda () (with-error-to-port error-port thunk)))
+    (let ((strings (list (get-output-string output-port)
+                         (get-output-string error-port))))
+      (close-output-port output-port)
+      (close-output-port error-port)
+      (apply values strings))))
+
+(define (full-name->name+version spec)
+  "Given package specification SPEC with or without output,
+return two values: name and version.  For example, for SPEC
+\"foo-0.9.1b:lib\", return \"foo\" and \"0.9.1b\"."
+  (let-values (((name version output)
+                (package-specification->name+version+output spec)))
+    (values name version)))
+
 (define (name+version->full-name name version)
   (string-append name "-" version))
 
@@ -244,6 +266,10 @@ Example:
   (filter-map (match-lambda
                ((_ (? package? package))
                 (package-full-name package))
+               ((_ (? package? package) output)
+                (make-package-specification (package-name package)
+                                            (package-version package)
+                                            output))
                (_ #f))
               inputs))
 
@@ -279,7 +305,7 @@ Example:
     (license           . ,package-license-names)
     (source            . ,package-source-names)
     (synopsis          . ,package-synopsis)
-    (description       . ,package-description)
+    (description       . ,package-description-string)
     (home-url          . ,package-home-page)
     (outputs           . ,package-outputs)
     (non-unique        . ,(negate package-unique?))
@@ -887,9 +913,10 @@ GENERATIONS is a list of generation numbers."
   (with-store store
     (delete-generations store profile generations)))
 
-(define (package-location-string package-id)
-  "Return a location string of a package PACKAGE-ID."
-  (and-let* ((package  (package-by-id package-id))
+(define (package-location-string id-or-name)
+  "Return a location string of a package with ID-OR-NAME."
+  (and-let* ((package  (or (package-by-id id-or-name)
+                           (first (packages-by-name id-or-name))))
              (location (package-location package)))
     (location->string location)))
 
@@ -927,3 +954,61 @@ GENERATIONS is a list of generation numbers."
           (build-derivations store derivations))
         (format #t "The source store path: ~a~%"
                 (package-source-derivation->store-path derivation))))))
+
+
+;;; Executing guix commands
+
+(define (guix-command . args)
+  "Run 'guix ARGS ...' command."
+  (catch 'quit
+    (lambda () (apply run-guix args))
+    (const #t)))
+
+(define (guix-command-output . args)
+  "Return 2 strings with 'guix ARGS ...' output and error output."
+  (output+error
+   (lambda ()
+     (parameterize ((guix-warning-port (current-error-port)))
+       (apply guix-command args)))))
+
+(define (help-string . commands)
+  "Return string with 'guix COMMANDS ... --help' output."
+  (apply guix-command-output `(,@commands "--help")))
+
+(define (pipe-guix-output guix-args command-args)
+  "Run 'guix GUIX-ARGS ...' command and pipe its output to a shell command
+defined by COMMAND-ARGS.
+Return #t if the shell command was executed successfully."
+  (let ((pipe (apply open-pipe* OPEN_WRITE command-args)))
+    (with-output-to-port pipe
+      (lambda () (apply guix-command guix-args)))
+    (zero? (status:exit-val (close-pipe pipe)))))
+
+
+;;; Lists of packages, lint checkers, etc.
+
+(define (graph-type-names)
+  "Return a list of names of available graph node types."
+  (map node-type-name %node-types))
+
+(define (refresh-updater-names)
+  "Return a list of names of available refresh updater types."
+  (map (@ (guix upstream) upstream-updater-name)
+       (@ (guix scripts refresh) %updaters)))
+
+(define (lint-checker-names)
+  "Return a list of names of available lint checkers."
+  (map (lambda (checker)
+         (symbol->string (lint-checker-name checker)))
+       %checkers))
+
+(define (package-names)
+  "Return a list of names of available packages."
+  (delete-duplicates
+   (fold-packages (lambda (pkg res)
+                    (cons (package-name pkg) res))
+                  '())))
+
+;; See the comment to 'guix-package-names' function in "guix-popup.el".
+(define (package-names-lists)
+  (map list (package-names)))

emacs/guix-messages.el

@@ -1,6 +1,6 @@
 ;;; guix-messages.el --- Minibuffer messages
 
-;; Copyright © 2014 Alex Kost <alezost@gmail.com>
+;; Copyright © 2014, 2015 Alex Kost <alezost@gmail.com>
 
 ;; This file is part of GNU Guix.
 
@@ -186,14 +186,14 @@
 (defun guix-result-message (profile entries entry-type
                             search-type search-vals)
   "Display an appropriate message after displaying ENTRIES."
-  (let* ((type-spec (guix-get-key-val guix-messages
-                                      entry-type search-type))
+  (let* ((type-spec (guix-assq-value guix-messages
+                                     entry-type search-type))
          (fun-or-count-spec (car type-spec)))
     (if (functionp fun-or-count-spec)
         (funcall fun-or-count-spec profile entries search-vals)
       (let* ((count     (length entries))
              (count-key (if (> count 1) 'many count))
-             (msg-spec  (guix-get-key-val type-spec count-key))
+             (msg-spec  (guix-assq-value type-spec count-key))
              (msg       (car msg-spec))
              (args      (cdr msg-spec)))
         (mapc (lambda (subst)

emacs/guix-pcomplete.el

@@ -28,58 +28,7 @@
 (require 'pcmpl-unix)
 (require 'cl-lib)
 (require 'guix-utils)
-
-
-;;; Regexps for parsing various "guix ..." outputs
-
-(defvar guix-pcomplete-parse-package-regexp
-  (rx bol (group (one-or-more (not blank))))
-  "Regexp used to find names of the packages.")
-
-(defvar guix-pcomplete-parse-command-regexp
-  (rx bol "   "
-      (group wordchar (one-or-more (or wordchar "-"))))
-  "Regexp used to find guix commands.
-'Command' means any option not prefixed with '-'.  For example,
-guix subcommand, system action, importer, etc.")
-
-(defvar guix-pcomplete-parse-long-option-regexp
-  (rx (or "  " ", ")
-      (group "--" (one-or-more (or wordchar "-"))
-             (zero-or-one "=")))
-  "Regexp used to find long options.")
-
-(defvar guix-pcomplete-parse-short-option-regexp
-  (rx bol (one-or-more blank)
-      "-" (group (not (any "- "))))
-  "Regexp used to find short options.")
-
-(defvar guix-pcomplete-parse-linter-regexp
-  (rx bol "- " (group (one-or-more (or wordchar "-"))))
-  "Regexp used to find 'lint' checkers.")
-
-(defvar guix-pcomplete-parse-regexp-group 1
-  "Parenthesized expression of regexps used to find commands and
-options.")
-
-
-;;; Non-receivable completions
-
-(defvar guix-pcomplete-systems
-  '("x86_64-linux" "i686-linux" "armhf-linux" "mips64el-linux")
-  "List of supported systems.")
-
-(defvar guix-pcomplete-hash-formats
-  '("nix-base32" "base32" "base16" "hex" "hexadecimal")
-  "List of supported hash formats.")
-
-(defvar guix-pcomplete-refresh-subsets
-  '("core" "non-core")
-  "List of supported 'refresh' subsets.")
-
-(defvar guix-pcomplete-key-policies
-  '("interactive" "always" "never")
-  "List of supported key download policies.")
+(require 'guix-help-vars)
 
 
 ;;; Interacting with guix
@@ -104,9 +53,8 @@ Return a list of strings matching REGEXP.
 GROUP specifies a parenthesized expression used in REGEXP."
   (with-temp-buffer
     (apply #'guix-pcomplete-run-guix args)
-    (goto-char (point-min))
     (let (result)
-      (while (re-search-forward regexp nil t)
+      (guix-while-search regexp
         (push (match-string-no-properties group) result))
       (nreverse result))))
 
@@ -128,7 +76,7 @@ function call is returned."
      (let* ((args '("--help"))
             (args (if command (cons command args) args))
             (res (apply #'guix-pcomplete-run-guix-and-search
-                        ,regexp guix-pcomplete-parse-regexp-group args)))
+                        ,regexp guix-help-parse-regexp-group args)))
        ,(if filter
             `(funcall ,filter res)
           'res))))
@@ -137,23 +85,23 @@ function call is returned."
   "If COMMAND is nil, return a list of available guix commands.
 If COMMAND is non-nil (it should be a string), return available
 subcommands, actions, etc. for this guix COMMAND."
-  guix-pcomplete-parse-command-regexp)
+  guix-help-parse-command-regexp)
 
 (guix-pcomplete-define-options-finder guix-pcomplete-long-options
   "Return a list of available long options for guix COMMAND."
-  guix-pcomplete-parse-long-option-regexp)
+  guix-help-parse-long-option-regexp)
 
 (guix-pcomplete-define-options-finder guix-pcomplete-short-options
   "Return a string with available short options for guix COMMAND."
-  guix-pcomplete-parse-short-option-regexp
+  guix-help-parse-short-option-regexp
   (lambda (list)
-    (mapconcat #'identity list "")))
+    (guix-concat-strings list "")))
 
 (guix-memoized-defun guix-pcomplete-all-packages ()
   "Return a list of all available Guix packages."
   (guix-pcomplete-run-guix-and-search
-   guix-pcomplete-parse-package-regexp
-   guix-pcomplete-parse-regexp-group
+   guix-help-parse-package-regexp
+   guix-help-parse-regexp-group
    "package" "--list-available"))
 
 (guix-memoized-defun guix-pcomplete-installed-packages (&optional profile)
@@ -162,17 +110,31 @@ subcommands, actions, etc. for this guix COMMAND."
                     (list (concat "--profile=" profile))))
          (args (append '("package" "--list-installed") args)))
     (apply #'guix-pcomplete-run-guix-and-search
-           guix-pcomplete-parse-package-regexp
-           guix-pcomplete-parse-regexp-group
+           guix-help-parse-package-regexp
+           guix-help-parse-regexp-group
            args)))
 
 (guix-memoized-defun guix-pcomplete-lint-checkers ()
   "Return a list of all available lint checkers."
   (guix-pcomplete-run-guix-and-search
-   guix-pcomplete-parse-linter-regexp
-   guix-pcomplete-parse-regexp-group
+   guix-help-parse-list-regexp
+   guix-help-parse-regexp-group
    "lint" "--list-checkers"))
 
+(guix-memoized-defun guix-pcomplete-graph-types ()
+  "Return a list of all available graph types."
+  (guix-pcomplete-run-guix-and-search
+   guix-help-parse-list-regexp
+   guix-help-parse-regexp-group
+   "graph" "--list-types"))
+
+(guix-memoized-defun guix-pcomplete-refresh-updaters ()
+  "Return a list of all available refresh updater types."
+  (guix-pcomplete-run-guix-and-search
+   guix-help-parse-list-regexp
+   guix-help-parse-regexp-group
+   "refresh" "--list-updaters"))
+
 
 ;;; Completing
 
@@ -254,8 +216,8 @@ group - the argument.")
   "Complete argument for guix COMMAND."
   (cond
    ((member command
-            '("archive" "build" "edit" "environment" "lint" "refresh"
-              "size"))
+            '("archive" "build" "challenge" "edit" "environment"
+              "graph" "lint" "refresh" "size"))
     (while t
       (pcomplete-here (guix-pcomplete-all-packages))))
    (t (pcomplete-here* (pcomplete-entries)))))
@@ -276,7 +238,7 @@ INPUT is the current partially completed string."
      ((option? "-L" "--load-path")
       (complete* (pcomplete-dirs)))
      ((string= "--key-download" option)
-      (complete* guix-pcomplete-key-policies))
+      (complete* guix-help-key-policies))
 
      ((command? "package")
       (cond
@@ -305,19 +267,23 @@ INPUT is the current partially completed string."
 
      ((and (command? "archive" "build" "size")
            (option? "-s" "--system"))
-      (complete* guix-pcomplete-systems))
+      (complete* guix-help-system-types))
 
      ((and (command? "build")
            (option? "-r" "--root"))
       (complete* (pcomplete-entries)))
 
+     ((and (command? "graph")
+           (option? "-t" "--type"))
+      (complete* (guix-pcomplete-graph-types)))
+
      ((and (command? "environment")
            (option? "-l" "--load"))
       (complete* (pcomplete-entries)))
 
      ((and (command? "hash" "download")
            (option? "-f" "--format"))
-      (complete* guix-pcomplete-hash-formats))
+      (complete* guix-help-hash-formats))
 
      ((and (command? "lint")
            (option? "-c" "--checkers"))
@@ -328,9 +294,13 @@ INPUT is the current partially completed string."
            (option? "-u" "--user"))
       (complete* (pcmpl-unix-user-names)))
 
-     ((and (command? "refresh")
-           (option? "-s" "--select"))
-      (complete* guix-pcomplete-refresh-subsets))
+     ((command? "refresh")
+      (cond
+       ((option? "-s" "--select")
+        (complete* guix-help-refresh-subsets))
+       ((option? "-t" "--type")
+        (guix-pcomplete-complete-comma-args
+         (guix-pcomplete-refresh-updaters)))))
 
      ((and (command? "size")
            (option? "-m" "--map-file"))

emacs/guix-popup.el

@@ -0,0 +1,48 @@
+;;; guix-popup.el --- Popup windows library
+
+;; Copyright © 2015 Alex Kost <alezost@gmail.com>
+
+;; This file is part of GNU Guix.
+
+;; GNU Guix is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; GNU Guix is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+;;; Commentary:
+
+;; This file provides `guix-define-popup' macro which is just an alias
+;; to `magit-define-popup'.  According to the manual (info
+;; "(magit-popup) Defining prefix and suffix commands") `magit-popup'
+;; library will eventually be superseded by a more general library.
+
+;;; Code:
+
+(require 'magit-popup)
+
+(defalias 'guix-define-popup 'magit-define-popup)
+
+(defvar guix-popup-font-lock-keywords
+  (eval-when-compile
+    `((,(rx "("
+            (group "guix-define-popup")
+            symbol-end
+            (zero-or-more blank)
+            (zero-or-one
+             (group (one-or-more (or (syntax word) (syntax symbol))))))
+       (1 font-lock-keyword-face)
+       (2 font-lock-function-name-face nil t)))))
+
+(font-lock-add-keywords 'emacs-lisp-mode guix-popup-font-lock-keywords)
+
+(provide 'guix-popup)
+
+;;; guix-popup.el ends here

emacs/guix-prettify.el

@@ -1,6 +1,6 @@
 ;;; guix-prettify.el --- Prettify Guix store file names
 
-;; Copyright © 2014 Alex Kost <alezost@gmail.com>
+;; Copyright © 2014, 2015 Alex Kost <alezost@gmail.com>
 
 ;; This file is part of GNU Guix.
 
@@ -47,9 +47,12 @@
 
 ;;; Code:
 
+(require 'guix-utils)
+
 (defgroup guix-prettify nil
   "Prettify Guix store file names."
   :prefix "guix-prettify-"
+  :group 'guix
   :group 'font-lock
   :group 'convenience)
 
@@ -74,9 +77,14 @@ disabling `guix-prettify-mode' a little faster."
   :group 'guix-prettify)
 
 (defcustom guix-prettify-regexp
-  (rx "/"
-      (or "nix" "gnu")
-      "/store/"
+  ;; The following file names / URLs should be abbreviated:
+
+  ;; /gnu/store/…-foo-0.1
+  ;; /nix/store/…-foo-0.1
+  ;; http://hydra.gnu.org/nar/…-foo-0.1
+  ;; http://hydra.gnu.org/log/…-foo-0.1
+
+  (rx "/" (or "store" "nar" "log") "/"
       ;; Hash-parts do not include "e", "o", "u" and "t".  See base32Chars
       ;; at <https://github.com/NixOS/nix/blob/master/src/libutil/hash.cc>
       (group (= 32 (any "0-9" "a-d" "f-n" "p-s" "v-z"))))
@@ -136,13 +144,11 @@ enabling/disabling `guix-prettify-mode'.  If nil, do nothing.")
           (remove-text-properties (point-min)
                                   (point-max)
                                   '(composition nil))
-        (save-excursion
-          (goto-char (point-min))
-          (while (re-search-forward guix-prettify-regexp nil t)
-            (remove-text-properties
-             (match-beginning guix-prettify-regexp-group)
-             (match-end       guix-prettify-regexp-group)
-             '(composition nil))))))))
+        (guix-while-search guix-prettify-regexp
+          (remove-text-properties
+           (match-beginning guix-prettify-regexp-group)
+           (match-end       guix-prettify-regexp-group)
+           '(composition nil)))))))
 
 ;;;###autoload
 (define-minor-mode guix-prettify-mode

emacs/guix-profiles.el

@@ -19,12 +19,14 @@
 
 ;;; Code:
 
+(require 'guix-config)
+
 (defvar guix-user-profile
   (expand-file-name "~/.guix-profile")
   "User profile.")
 
 (defvar guix-default-profile
-  (concat (or (getenv "NIX_STATE_DIR") "@guix_localstatedir@/guix")
+  (concat guix-config-state-directory
           "/profiles/per-user/"
           (getenv "USER")
           "/guix-profile")

emacs/guix-read.el

@@ -0,0 +1,182 @@
+;;; guix-read.el --- Minibuffer readers
+
+;; Copyright © 2015 Alex Kost <alezost@gmail.com>
+
+;; This file is part of GNU Guix.
+
+;; GNU Guix is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; GNU Guix is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+;;; Commentary:
+
+;; This file provides functions to prompt a user for packages, system
+;; types, hash formats and other guix related stuff.
+
+;;; Code:
+
+(require 'guix-help-vars)
+(require 'guix-utils)
+(require 'guix-base)
+
+(defun guix-read-file-name (prompt &optional dir default-filename
+                                   mustmatch initial predicate)
+  "Read file name.
+This function is similar to `read-file-name' except it also
+expands the file name."
+  (expand-file-name (read-file-name prompt dir default-filename
+                                    mustmatch initial predicate)))
+
+(defmacro guix-define-reader (name read-fun completions prompt)
+  "Define NAME function to read from minibuffer.
+READ-FUN may be `completing-read', `completing-read-multiple' or
+another function with the same arguments."
+  `(defun ,name (&optional prompt initial-contents)
+     (,read-fun ,(if prompt
+                     `(or prompt ,prompt)
+                   'prompt)
+                ,completions nil nil initial-contents)))
+
+(defmacro guix-define-readers (&rest args)
+  "Define reader functions.
+
+ARGS should have a form [KEYWORD VALUE] ...  The following
+keywords are available:
+
+  - `completions-var' - variable used to get completions.
+
+  - `completions-getter' - function used to get completions.
+
+  - `single-reader', `single-prompt' - name of a function to read
+    a single value, and a prompt for it.
+
+  - `multiple-reader', `multiple-prompt' - name of a function to
+    read multiple values, and a prompt for it.
+
+  - `multiple-separator' - if specified, another
+    `<multiple-reader-name>-string' function returning a string
+    of multiple values separated the specified separator will be
+    defined."
+  (let (completions-var
+        completions-getter
+        single-reader
+        single-prompt
+        multiple-reader
+        multiple-prompt
+        multiple-separator)
+
+    ;; Process the keyword args.
+    (while (keywordp (car args))
+      (pcase (pop args)
+        (`:completions-var    (setq completions-var    (pop args)))
+        (`:completions-getter (setq completions-getter (pop args)))
+        (`:single-reader      (setq single-reader      (pop args)))
+        (`:single-prompt      (setq single-prompt      (pop args)))
+        (`:multiple-reader    (setq multiple-reader    (pop args)))
+        (`:multiple-prompt    (setq multiple-prompt    (pop args)))
+        (`:multiple-separator (setq multiple-separator (pop args)))
+	(_ (pop args))))
+
+    (let ((completions
+           (cond ((and completions-var completions-getter)
+                  `(or ,completions-var
+                       (setq ,completions-var
+                             (funcall ',completions-getter))))
+                 (completions-var
+                  completions-var)
+                 (completions-getter
+                  `(funcall ',completions-getter)))))
+      `(progn
+         ,(when (and completions-var
+                     (not (boundp completions-var)))
+            `(defvar ,completions-var nil))
+
+         ,(when single-reader
+            `(guix-define-reader ,single-reader completing-read
+                                 ,completions ,single-prompt))
+
+         ,(when multiple-reader
+            `(guix-define-reader ,multiple-reader completing-read-multiple
+                                 ,completions ,multiple-prompt))
+
+         ,(when (and multiple-reader multiple-separator)
+            (let ((name (intern (concat (symbol-name multiple-reader)
+                                        "-string"))))
+              `(defun ,name (&optional prompt initial-contents)
+                 (guix-concat-strings
+                  (,multiple-reader prompt initial-contents)
+                  ,multiple-separator))))))))
+
+(guix-define-readers
+ :completions-var guix-help-system-types
+ :single-reader guix-read-system-type
+ :single-prompt "System type: ")
+
+(guix-define-readers
+ :completions-var guix-help-source-types
+ :single-reader guix-read-source-type
+ :single-prompt "Source type: ")
+
+(guix-define-readers
+ :completions-var guix-help-hash-formats
+ :single-reader guix-read-hash-format
+ :single-prompt "Hash format: ")
+
+(guix-define-readers
+ :completions-var guix-help-refresh-subsets
+ :single-reader guix-read-refresh-subset
+ :single-prompt "Refresh subset: ")
+
+(guix-define-readers
+ :completions-getter guix-refresh-updater-names
+ :multiple-reader guix-read-refresh-updater-names
+ :multiple-prompt "Refresh updater,s: "
+ :multiple-separator ",")
+
+(guix-define-readers
+ :completions-var guix-help-key-policies
+ :single-reader guix-read-key-policy
+ :single-prompt "Key policy: ")
+
+(guix-define-readers
+ :completions-var guix-help-elpa-archives
+ :single-reader guix-read-elpa-archive
+ :single-prompt "ELPA archive: ")
+
+(guix-define-readers
+ :completions-var guix-help-verify-options
+ :multiple-reader guix-read-verify-options
+ :multiple-prompt "Verify option,s: "
+ :multiple-separator ",")
+
+(guix-define-readers
+ :completions-getter guix-graph-type-names
+ :single-reader guix-read-graph-type
+ :single-prompt "Graph node type: ")
+
+(guix-define-readers
+ :completions-getter guix-lint-checker-names
+ :multiple-reader guix-read-lint-checker-names
+ :multiple-prompt "Linter,s: "
+ :multiple-separator ",")
+
+(guix-define-readers
+ :completions-getter guix-package-names
+ :single-reader guix-read-package-name
+ :single-prompt "Package: "
+ :multiple-reader guix-read-package-names
+ :multiple-prompt "Package,s: "
+ :multiple-separator " ")
+
+(provide 'guix-read)
+
+;;; guix-read.el ends here

emacs/guix-utils.el

@@ -128,6 +128,53 @@ split it into several short lines."
       (fill-region (point-min) (point-max)))
     (buffer-string)))
 
+(defun guix-concat-strings (strings separator &optional location)
+  "Return new string by concatenating STRINGS with SEPARATOR.
+If LOCATION is a symbol `head', add another SEPARATOR to the
+beginning of the returned string; if `tail' - add SEPARATOR to
+the end of the string; if nil, do not add SEPARATOR; otherwise
+add both to the end and to the beginning."
+  (let ((str (mapconcat #'identity strings separator)))
+    (cond ((null location)
+           str)
+          ((eq location 'head)
+           (concat separator str))
+          ((eq location 'tail)
+           (concat str separator))
+          (t
+           (concat separator str separator)))))
+
+(defun guix-shell-quote-argument (argument)
+  "Quote shell command ARGUMENT.
+This function is similar to `shell-quote-argument', but less strict."
+  (if (equal argument "")
+      "''"
+    (replace-regexp-in-string
+     "\n" "'\n'"
+     (replace-regexp-in-string
+      (rx (not (any alnum "-=,./\n"))) "\\\\\\&" argument))))
+
+(defun guix-command-symbol (&optional args)
+  "Return symbol by concatenating 'guix' and ARGS (strings)."
+  (intern (guix-concat-strings (cons "guix" args) "-")))
+
+(defun guix-command-string (&optional args)
+  "Return 'guix ARGS ...' string with quoted shell arguments."
+  (let ((args (mapcar #'guix-shell-quote-argument args)))
+    (guix-concat-strings (cons "guix" args) " ")))
+
+(defun guix-copy-as-kill (string &optional no-message?)
+  "Put STRING into `kill-ring'.
+If NO-MESSAGE? is non-nil, do not display a message about it."
+  (kill-new string)
+  (unless no-message?
+    (message "'%s' has been added to kill ring." string)))
+
+(defun guix-copy-command-as-kill (args &optional no-message?)
+  "Put 'guix ARGS ...' string into `kill-ring'.
+See also `guix-copy-as-kill'."
+  (guix-copy-as-kill (guix-command-string args) no-message?))
+
 (defun guix-completing-read-multiple (prompt table &optional predicate
                                       require-match initial-input
                                       hist def inherit-input-method)
@@ -146,20 +193,58 @@ Return time value."
   (require 'org)
   (org-read-date nil t nil prompt))
 
-(defun guix-get-key-val (alist &rest keys)
-  "Return value from ALIST by KEYS.
-ALIST is alist of alists of alists ... which can be consecutively
-accessed with KEYS."
-  (let ((val alist))
-    (dolist (key keys val)
-      (setq val (cdr (assq key val))))))
+(defcustom guix-find-file-function #'find-file
+  "Function used to find a file.
+The function is called by `guix-find-file' with a file name as a
+single argument."
+  :type '(choice (function-item find-file)
+                 (function-item org-open-file)
+                 (function :tag "Other function"))
+  :group 'guix)
 
 (defun guix-find-file (file)
   "Find FILE if it exists."
   (if (file-exists-p file)
-      (find-file file)
+      (funcall guix-find-file-function file)
     (message "File '%s' does not exist." file)))
 
+(defvar url-handler-regexp)
+
+(defun guix-find-file-or-url (file-or-url)
+  "Find FILE-OR-URL."
+  (require 'url-handlers)
+  (let ((file-name-handler-alist
+         (cons (cons url-handler-regexp 'url-file-handler)
+               file-name-handler-alist)))
+    (find-file file-or-url)))
+
+(defmacro guix-while-search (regexp &rest body)
+  "Evaluate BODY after each search for REGEXP in the current buffer."
+  (declare (indent 1) (debug t))
+  `(save-excursion
+     (goto-char (point-min))
+     (while (re-search-forward ,regexp nil t)
+       ,@body)))
+
+
+;;; Alist accessors
+
+(defmacro guix-define-alist-accessor (name assoc-fun)
+  "Define NAME function to access alist values using ASSOC-FUN."
+  `(defun ,name (alist &rest keys)
+     ,(format "Return value from ALIST by KEYS using `%s'.
+ALIST is alist of alists of alists ... which can be consecutively
+accessed with KEYS."
+              assoc-fun)
+     (if (or (null alist) (null keys))
+         alist
+       (apply #',name
+              (cdr (,assoc-fun (car keys) alist))
+              (cdr keys)))))
+
+(guix-define-alist-accessor guix-assq-value assq)
+(guix-define-alist-accessor guix-assoc-value assoc)
+
 
 ;;; Diff
 
@@ -199,6 +284,27 @@ See `defun' for the meaning of arguments."
               (mapconcat #'symbol-name arglist " ")
               docstring)))
 
+(defmacro guix-memoized-defalias (symbol definition &optional docstring)
+  "Set SYMBOL's function definition to memoized version of DEFINITION."
+  (declare (doc-string 3) (indent 1))
+  `(defalias ',symbol
+     (guix-memoize #',definition)
+     ,(or docstring
+          (format "Memoized version of `%S'." definition))))
+
+(defvar guix-memoized-font-lock-keywords
+  (eval-when-compile
+    `((,(rx "("
+            (group "guix-memoized-" (or "defun" "defalias"))
+            symbol-end
+            (zero-or-more blank)
+            (zero-or-one
+             (group (one-or-more (or (syntax word) (syntax symbol))))))
+       (1 font-lock-keyword-face)
+       (2 font-lock-function-name-face nil t)))))
+
+(font-lock-add-keywords 'emacs-lisp-mode guix-memoized-font-lock-keywords)
+
 (provide 'guix-utils)
 
 ;;; guix-utils.el ends here

emacs/guix.el

@@ -1,6 +1,6 @@
 ;;; guix.el --- Interface for GNU Guix package manager
 
-;; Copyright © 2014 Alex Kost <alezost@gmail.com>
+;; Copyright © 2014, 2015 Alex Kost <alezost@gmail.com>
 
 ;; Package-Requires: ((geiser "0.3"))
 ;; Keywords: tools
@@ -32,12 +32,18 @@
 (require 'guix-list)
 (require 'guix-info)
 (require 'guix-utils)
+(require 'guix-read)
 
 (defgroup guix nil
   "Interface for Guix package manager."
   :prefix "guix-"
   :group 'external)
 
+(defgroup guix-faces nil
+  "Guix faces."
+  :group 'guix
+  :group 'faces)
+
 (defcustom guix-list-single-package nil
   "If non-nil, list a package even if it is the only matching result.
 If nil, show a single package in the info buffer."
@@ -193,6 +199,15 @@ Interactively with prefix, prompt for PROFILE."
                              (float-time from)
                              (float-time to)))
 
+;;;###autoload
+(defun guix-edit (id-or-name)
+  "Edit (go to location of) package with ID-OR-NAME."
+  (interactive (list (guix-read-package-name)))
+  (let ((loc (guix-package-location id-or-name)))
+    (if loc
+        (guix-find-location loc)
+      (message "Couldn't find package location."))))
+
 (provide 'guix)
 
 ;;; guix.el ends here

etc/completion/bash/guix

@@ -18,15 +18,24 @@
 
 # Bash completion for Guix commands.
 
+declare _guix_available_packages
+
 _guix_complete_available_package ()
 {
     local prefix="$1"
-    local packages="$(${COMP_WORDS[0]} package -A "^$prefix" | cut -f1)"
-    COMPREPLY=($(compgen -W "$packages" -- "$prefix"))
+    if [ -z "$_guix_available_packages" ]
+    then
+	# Cache the complete list because it rarely changes and makes
+	# completion much faster.
+	_guix_available_packages="$(${COMP_WORDS[0]} package -A | cut -f1)"
+    fi
+    COMPREPLY=($(compgen -W "$_guix_available_packages" -- "$prefix"))
 }
 
 _guix_complete_installed_package ()
 {
+    # Here we do not cache the list of installed packages because that
+    # may change over time and the list is relatively small anyway.
     local prefix="$1"
     local packages="$(${COMP_WORDS[0]} package -I "^$prefix" | cut -f1)"
     COMPREPLY=($(compgen -W "$packages" -- "$prefix"))
@@ -88,6 +97,8 @@ _guix_complete_file ()
     COMPREPLY=()
 }
 
+declare _guix_subcommands
+
 _guix_complete ()
 {
     local word_count=${#COMP_WORDS[*]}
@@ -105,8 +116,12 @@ _guix_complete ()
 
     case $COMP_CWORD in
 	1)
-	    local subcommands="$(guix --help | grep '^  ' | cut -c 2-)"
-	    COMPREPLY=($(compgen -W "$subcommands" -- "$word_at_point"))
+	    if [ -z "$_guix_subcommands" ]
+	    then
+		# Cache the list of subcommands to speed things up.
+		_guix_subcommands="$(guix --help | grep '^  ' | cut -c 2-)"
+	    fi
+	    COMPREPLY=($(compgen -W "$_guix_subcommands" -- "$word_at_point"))
 	    ;;
 	*)
 	    if _guix_is_command "package"

gnu-system.am

@@ -25,7 +25,7 @@ GNU_SYSTEM_MODULES =				\
   gnu.scm					\
   gnu/artwork.scm				\
   gnu/packages.scm				\
-  gnu/packages/aarddict.scm			\
+  gnu/packages/abduco.scm			\
   gnu/packages/abiword.scm			\
   gnu/packages/acct.scm				\
   gnu/packages/acl.scm				\
@@ -65,6 +65,7 @@ GNU_SYSTEM_MODULES =				\
   gnu/packages/commencement.scm			\
   gnu/packages/compression.scm			\
   gnu/packages/conkeror.scm			\
+  gnu/packages/conky.scm			\
   gnu/packages/cook.scm				\
   gnu/packages/cpio.scm				\
   gnu/packages/cppi.scm				\
@@ -87,6 +88,7 @@ GNU_SYSTEM_MODULES =				\
   gnu/packages/docbook.scm			\
   gnu/packages/doxygen.scm			\
   gnu/packages/dunst.scm			\
+  gnu/packages/dvtm.scm				\
   gnu/packages/ebook.scm			\
   gnu/packages/ed.scm				\
   gnu/packages/elf.scm				\
@@ -96,7 +98,9 @@ GNU_SYSTEM_MODULES =				\
   gnu/packages/enlightenment.scm		\
   gnu/packages/fcitx.scm			\
   gnu/packages/feh.scm                          \
+  gnu/packages/figlet.scm			\
   gnu/packages/file.scm				\
+  gnu/packages/finance.scm			\
   gnu/packages/firmware.scm			\
   gnu/packages/fish.scm				\
   gnu/packages/flashing-tools.scm		\
@@ -116,7 +120,6 @@ GNU_SYSTEM_MODULES =				\
   gnu/packages/gcc.scm				\
   gnu/packages/gd.scm				\
   gnu/packages/gdb.scm				\
-  gnu/packages/gdbm.scm				\
   gnu/packages/geeqie.scm			\
   gnu/packages/gettext.scm			\
   gnu/packages/ghostscript.scm			\
@@ -163,6 +166,7 @@ GNU_SYSTEM_MODULES =				\
   gnu/packages/jrnl.scm				\
   gnu/packages/julia.scm			\
   gnu/packages/kde.scm				\
+  gnu/packages/kde-frameworks.scm		\
   gnu/packages/key-mon.scm			\
   gnu/packages/language.scm			\
   gnu/packages/less.scm				\
@@ -234,10 +238,12 @@ GNU_SYSTEM_MODULES =				\
   gnu/packages/onc-rpc.scm			\
   gnu/packages/openbox.scm			\
   gnu/packages/openldap.scm			\
+  gnu/packages/openstack.scm			\
   gnu/packages/orpheus.scm			\
   gnu/packages/ots.scm				\
   gnu/packages/package-management.scm		\
   gnu/packages/parallel.scm			\
+  gnu/packages/password-utils.scm		\
   gnu/packages/patchutils.scm			\
   gnu/packages/pciutils.scm			\
   gnu/packages/pcre.scm				\
@@ -319,6 +325,7 @@ GNU_SYSTEM_MODULES =				\
   gnu/packages/wget.scm				\
   gnu/packages/wicd.scm				\
   gnu/packages/wine.scm				\
+  gnu/packages/wm.scm				\
   gnu/packages/wordnet.scm			\
   gnu/packages/wv.scm				\
   gnu/packages/wxwidgets.scm			\
@@ -339,21 +346,24 @@ GNU_SYSTEM_MODULES =				\
   gnu/services/avahi.scm			\
   gnu/services/base.scm				\
   gnu/services/databases.scm			\
+  gnu/services/dbus.scm				\
   gnu/services/desktop.scm			\
   gnu/services/dmd.scm				\
   gnu/services/lirc.scm				\
   gnu/services/networking.scm			\
   gnu/services/ssh.scm				\
+  gnu/services/web.scm				\
   gnu/services/xorg.scm				\
 						\
   gnu/system.scm				\
   gnu/system/file-systems.scm			\
   gnu/system/grub.scm				\
   gnu/system/install.scm			\
-  gnu/system/linux.scm				\
+  gnu/system/linux-container.scm		\
   gnu/system/linux-initrd.scm			\
   gnu/system/locale.scm				\
   gnu/system/nss.scm				\
+  gnu/system/pam.scm				\
   gnu/system/shadow.scm				\
   gnu/system/vm.scm				\
 						\
@@ -375,6 +385,7 @@ dist_patch_DATA =						\
   gnu/packages/patches/abiword-pass-no-undefined-to-linker.patch	\
   gnu/packages/patches/abiword-use-proper-png-api.patch		\
   gnu/packages/patches/abiword-wmf-version-lookup-fix.patch	\
+  gnu/packages/patches/acl-hurd-path-max.patch			\
   gnu/packages/patches/aegis-constness-error.patch         	\
   gnu/packages/patches/aegis-perl-tempdir1.patch           	\
   gnu/packages/patches/aegis-perl-tempdir2.patch           	\
@@ -389,14 +400,18 @@ dist_patch_DATA =						\
   gnu/packages/patches/audacity-fix-ffmpeg-binding.patch	\
   gnu/packages/patches/automake-skip-amhello-tests.patch	\
   gnu/packages/patches/avahi-localstatedir.patch		\
+  gnu/packages/patches/avidemux-install-to-lib.patch		\
   gnu/packages/patches/avrdude-fix-libusb.patch			\
   gnu/packages/patches/bash-completion-directories.patch	\
+  gnu/packages/patches/bedtools-32bit-compilation.patch         \
   gnu/packages/patches/bowtie-fix-makefile.patch		\
   gnu/packages/patches/bigloo-gc-shebangs.patch			\
   gnu/packages/patches/binutils-ld-new-dtags.patch		\
   gnu/packages/patches/binutils-loongson-workaround.patch	\
   gnu/packages/patches/bitlbee-configure-doc-fix.patch		\
+  gnu/packages/patches/bluez-tests.patch			\
   gnu/packages/patches/boost-mips-avoid-m32.patch		\
+  gnu/packages/patches/byobu-writable-status.patch		\
   gnu/packages/patches/calibre-drop-unrar.patch			\
   gnu/packages/patches/calibre-no-updates-dialog.patch		\
   gnu/packages/patches/cdparanoia-fpic.patch			\
@@ -404,12 +419,6 @@ dist_patch_DATA =						\
   gnu/packages/patches/clang-libc-search-path.patch		\
   gnu/packages/patches/clucene-pkgconfig.patch			\
   gnu/packages/patches/cmake-fix-tests.patch			\
-  gnu/packages/patches/cpio-CVE-2014-9112-pt1.patch		\
-  gnu/packages/patches/cpio-CVE-2014-9112-pt2.patch		\
-  gnu/packages/patches/cpio-CVE-2014-9112-pt3.patch		\
-  gnu/packages/patches/cpio-CVE-2014-9112-pt4.patch		\
-  gnu/packages/patches/cpio-CVE-2014-9112-pt5.patch		\
-  gnu/packages/patches/cpio-fix-symlink-bad-length-test.patch	\
   gnu/packages/patches/cpio-gets-undeclared.patch		\
   gnu/packages/patches/cpufrequtils-fix-aclocal.patch		\
   gnu/packages/patches/crda-optional-gcrypt.patch		\
@@ -418,7 +427,7 @@ dist_patch_DATA =						\
   gnu/packages/patches/cssc-missing-include.patch               \
   gnu/packages/patches/clucene-contribs-lib.patch               \
   gnu/packages/patches/cursynth-wave-rand.patch			\
-  gnu/packages/patches/dbus-localstatedir.patch			\
+  gnu/packages/patches/dbus-helper-search-path.patch		\
   gnu/packages/patches/dealii-p4est-interface.patch		\
   gnu/packages/patches/diffutils-gets-undeclared.patch		\
   gnu/packages/patches/dfu-programmer-fix-libusb.patch		\
@@ -429,11 +438,22 @@ dist_patch_DATA =						\
   gnu/packages/patches/elfutils-tests-ptrace.patch		\
   gnu/packages/patches/emacs-exec-path.patch			\
   gnu/packages/patches/eudev-rules-directory.patch		\
+  gnu/packages/patches/evilwm-lost-focus-bug.patch		\
+  gnu/packages/patches/expat-CVE-2015-1283.patch		\
+  gnu/packages/patches/fastcap-mulGlobal.patch			\
+  gnu/packages/patches/fastcap-mulSetup.patch			\
+  gnu/packages/patches/fasthenry-spAllocate.patch		\
+  gnu/packages/patches/fasthenry-spBuild.patch			\
+  gnu/packages/patches/fasthenry-spUtils.patch			\
+  gnu/packages/patches/fasthenry-spSolve.patch			\
+  gnu/packages/patches/fasthenry-spFactor.patch			\
   gnu/packages/patches/findutils-absolute-paths.patch		\
   gnu/packages/patches/findutils-localstatedir.patch		\
   gnu/packages/patches/flashrom-use-libftdi1.patch		\
   gnu/packages/patches/flex-bison-tests.patch			\
+  gnu/packages/patches/flint-ldconfig.patch			\
   gnu/packages/patches/fltk-shared-lib-defines.patch		\
+  gnu/packages/patches/freeimage-CVE-2015-0852.patch		\
   gnu/packages/patches/fuse-CVE-2015-3202.patch			\
   gnu/packages/patches/gawk-shell.patch				\
   gnu/packages/patches/gcc-arm-link-spec-fix.patch		\
@@ -441,8 +461,10 @@ dist_patch_DATA =						\
   gnu/packages/patches/gcc-libvtv-runpath.patch			\
   gnu/packages/patches/gcc-5.0-libvtv-runpath.patch		\
   gnu/packages/patches/geoclue-config.patch			\
+  gnu/packages/patches/ghostscript-CVE-2015-3228.patch		\
   gnu/packages/patches/ghostscript-runpath.patch		\
   gnu/packages/patches/gitolite-openssh-6.8-compat.patch	\
+  gnu/packages/patches/glib-networking-ssl-cert-file.patch	\
   gnu/packages/patches/glib-tests-desktop.patch			\
   gnu/packages/patches/glib-tests-homedir.patch			\
   gnu/packages/patches/glib-tests-prlimit.patch			\
@@ -451,29 +473,39 @@ dist_patch_DATA =						\
   gnu/packages/patches/glibc-bootstrap-system.patch		\
   gnu/packages/patches/glibc-ldd-x86_64.patch			\
   gnu/packages/patches/glibc-locales.patch			\
+  gnu/packages/patches/glibc-locale-incompatibility.patch	\
+  gnu/packages/patches/glibc-o-largefile.patch			\
+  gnu/packages/patches/glibc-versioned-locpath.patch		\
   gnu/packages/patches/gmp-arm-asm-nothumb.patch		\
+  gnu/packages/patches/gmp-faulty-test.patch			\
+  gnu/packages/patches/gnucash-price-quotes-perl.patch		\
+  gnu/packages/patches/gnutls-doc-fix.patch			\
   gnu/packages/patches/gobject-introspection-absolute-shlib-path.patch \
   gnu/packages/patches/gobject-introspection-cc.patch		\
   gnu/packages/patches/gobject-introspection-girepository.patch	\
   gnu/packages/patches/grep-CVE-2015-1345.patch			\
   gnu/packages/patches/grub-gets-undeclared.patch		\
   gnu/packages/patches/grub-freetype.patch			\
-  gnu/packages/patches/gsl-poly-test-fix-pt1.patch		\
-  gnu/packages/patches/gsl-poly-test-fix-pt2.patch		\
   gnu/packages/patches/guile-1.8-cpp-4.5.patch			\
   gnu/packages/patches/guile-arm-fixes.patch			\
   gnu/packages/patches/guile-default-utf8.patch			\
   gnu/packages/patches/guile-linux-syscalls.patch		\
+  gnu/packages/patches/guile-present-coding.patch		\
   gnu/packages/patches/guile-relocatable.patch			\
+  gnu/packages/patches/guile-rsvg-pkgconfig.patch		\
+  gnu/packages/patches/guitarix-c++11.patch			\
   gnu/packages/patches/gtkglext-disable-disable-deprecated.patch \
   gnu/packages/patches/hop-bigloo-4.0b.patch			\
   gnu/packages/patches/hop-linker-flags.patch			\
   gnu/packages/patches/hwloc-gather-topology-lstopo.patch	\
   gnu/packages/patches/hydra-automake-1.15.patch		\
   gnu/packages/patches/hydra-disable-darcs-test.patch		\
-  gnu/packages/patches/icecat-enable-acceleration-and-webgl.patch \
+  gnu/packages/patches/icecat-avoid-bundled-includes.patch	\
   gnu/packages/patches/icecat-freetype-2.6.patch		\
-  gnu/packages/patches/icecat-libvpx-1.4.patch			\
+  gnu/packages/patches/icu4c-CVE-2014-6585.patch		\
+  gnu/packages/patches/icu4c-CVE-2015-1270.patch		\
+  gnu/packages/patches/icu4c-CVE-2015-4760.patch		\
+  gnu/packages/patches/imagemagick-test-segv.patch		\
   gnu/packages/patches/irrlicht-mesa-10.patch			\
   gnu/packages/patches/jbig2dec-ignore-testtest.patch		\
   gnu/packages/patches/julia-0.3.10-fix-empty-array.patch	\
@@ -488,45 +520,44 @@ dist_patch_DATA =						\
   gnu/packages/patches/libarchive-mtree-filename-length-fix.patch \
   gnu/packages/patches/libbonobo-activation-test-race.patch	\
   gnu/packages/patches/libcanberra-sound-theme-freedesktop.patch \
+  gnu/packages/patches/libdrm-symbol-check.patch		\
   gnu/packages/patches/libevent-dns-tests.patch			\
+  gnu/packages/patches/libmtp-devices.patch			\
   gnu/packages/patches/liboop-mips64-deplibs-fix.patch		\
+  gnu/packages/patches/liblxqt-include.patch			\
   gnu/packages/patches/libmad-armv7-thumb-pt1.patch		\
   gnu/packages/patches/libmad-armv7-thumb-pt2.patch		\
   gnu/packages/patches/libmad-frame-length.patch		\
   gnu/packages/patches/libmad-mips-newgcc.patch			\
+  gnu/packages/patches/librsvg-tests.patch			\
   gnu/packages/patches/libtheora-config-guess.patch		\
-  gnu/packages/patches/libtiff-CVE-2012-4564.patch		\
-  gnu/packages/patches/libtiff-CVE-2013-1960.patch		\
-  gnu/packages/patches/libtiff-CVE-2013-1961.patch		\
-  gnu/packages/patches/libtiff-CVE-2013-4231.patch		\
-  gnu/packages/patches/libtiff-CVE-2013-4232.patch		\
-  gnu/packages/patches/libtiff-CVE-2013-4243.patch		\
-  gnu/packages/patches/libtiff-CVE-2013-4244.patch		\
-  gnu/packages/patches/libtiff-CVE-2014-8127-pt1.patch		\
-  gnu/packages/patches/libtiff-CVE-2014-8127-pt2.patch		\
-  gnu/packages/patches/libtiff-CVE-2014-8127-pt3.patch		\
-  gnu/packages/patches/libtiff-CVE-2014-8127-pt4.patch		\
-  gnu/packages/patches/libtiff-CVE-2014-8128-pt1.patch		\
-  gnu/packages/patches/libtiff-CVE-2014-8128-pt2.patch		\
-  gnu/packages/patches/libtiff-CVE-2014-8128-pt3.patch		\
-  gnu/packages/patches/libtiff-CVE-2014-8128-pt4.patch		\
-  gnu/packages/patches/libtiff-CVE-2014-8128-pt5.patch		\
-  gnu/packages/patches/libtiff-CVE-2014-8129.patch		\
-  gnu/packages/patches/libtiff-CVE-2014-9330.patch		\
-  gnu/packages/patches/libtiff-CVE-2014-9655.patch		\
   gnu/packages/patches/libtool-skip-tests2.patch		\
   gnu/packages/patches/libssh-CVE-2014-0017.patch		\
+  gnu/packages/patches/libunwind-CVE-2015-3239.patch		\
+  gnu/packages/patches/libwmf-CAN-2004-0941.patch		\
   gnu/packages/patches/libwmf-CVE-2006-3376.patch		\
+  gnu/packages/patches/libwmf-CVE-2007-0455.patch		\
+  gnu/packages/patches/libwmf-CVE-2007-2756.patch		\
+  gnu/packages/patches/libwmf-CVE-2007-3472.patch		\
+  gnu/packages/patches/libwmf-CVE-2007-3473.patch		\
+  gnu/packages/patches/libwmf-CVE-2007-3477.patch		\
   gnu/packages/patches/libwmf-CVE-2009-1364.patch		\
-  gnu/packages/patches/libwmf-CVE-2015-0848+4588+4695+4696.patch \
+  gnu/packages/patches/libwmf-CVE-2009-3546.patch		\
+  gnu/packages/patches/libwmf-CVE-2015-0848+CVE-2015-4588.patch	\
+  gnu/packages/patches/libwmf-CVE-2015-4695.patch		\
+  gnu/packages/patches/libwmf-CVE-2015-4696.patch		\
   gnu/packages/patches/lirc-localstatedir.patch			\
+  gnu/packages/patches/libpthread-glibc-preparation.patch	\
   gnu/packages/patches/lm-sensors-hwmon-attrs.patch		\
+  gnu/packages/patches/lua-pkgconfig.patch                      \
   gnu/packages/patches/lua51-liblua-so.patch                    \
   gnu/packages/patches/luajit-no_ldconfig.patch			\
   gnu/packages/patches/luajit-symlinks.patch			\
   gnu/packages/patches/luit-posix.patch				\
   gnu/packages/patches/m4-gets-undeclared.patch			\
   gnu/packages/patches/make-impure-dirs.patch			\
+  gnu/packages/patches/mars-install.patch			\
+  gnu/packages/patches/mars-sfml-2.3.patch			\
   gnu/packages/patches/maxima-defsystem-mkdir.patch		\
   gnu/packages/patches/mc-fix-ncurses-build.patch		\
   gnu/packages/patches/mcron-install.patch			\
@@ -538,7 +569,6 @@ dist_patch_DATA =						\
   gnu/packages/patches/module-init-tools-moduledir.patch	\
   gnu/packages/patches/mumps-build-parallelism.patch		\
   gnu/packages/patches/mupdf-buildsystem-fix.patch		\
-  gnu/packages/patches/mutt-CVE-2014-9116.patch			\
   gnu/packages/patches/mutt-store-references.patch		\
   gnu/packages/patches/net-tools-bitrot.patch			\
   gnu/packages/patches/ngircd-handle-zombies.patch		\
@@ -550,20 +580,25 @@ dist_patch_DATA =						\
   gnu/packages/patches/nvi-dbpagesize-binpower.patch		\
   gnu/packages/patches/nvi-db4.patch				\
   gnu/packages/patches/openexr-missing-samples.patch		\
+  gnu/packages/patches/openjpeg-CVE-2015-6581.patch		\
+  gnu/packages/patches/openjpeg-use-after-free-fix.patch	\
   gnu/packages/patches/openssl-runpath.patch			\
+  gnu/packages/patches/openssl-c-rehash.patch			\
   gnu/packages/patches/orpheus-cast-errors-and-includes.patch	\
   gnu/packages/patches/ots-no-include-missing-file.patch	\
   gnu/packages/patches/patchelf-page-size.patch			\
   gnu/packages/patches/patchelf-rework-for-arm.patch		\
   gnu/packages/patches/patchutils-xfail-gendiff-tests.patch	\
   gnu/packages/patches/patch-hurd-path-max.patch		\
-  gnu/packages/patches/pavucontrol-sigsegv.patch		\
+  gnu/packages/patches/perl-autosplit-default-time.patch	\
+  gnu/packages/patches/perl-finance-quote-unuse-mozilla-ca.patch \
   gnu/packages/patches/perl-gd-options-passthrough-and-fontconfig.patch \
   gnu/packages/patches/perl-module-pluggable-search.patch	\
   gnu/packages/patches/perl-net-amazon-s3-moose-warning.patch	\
   gnu/packages/patches/perl-net-ssleay-disable-ede-test.patch	\
   gnu/packages/patches/perl-no-sys-dirs.patch			\
   gnu/packages/patches/perl-tk-x11-discover.patch		\
+  gnu/packages/patches/pidgin-add-search-path.patch		\
   gnu/packages/patches/pingus-sdl-libs-config.patch		\
   gnu/packages/patches/plotutils-libpng-jmpbuf.patch		\
   gnu/packages/patches/polkit-drop-test.patch			\
@@ -578,33 +613,17 @@ dist_patch_DATA =						\
   gnu/packages/patches/pybugz-encode-error.patch		\
   gnu/packages/patches/pybugz-stty.patch			\
   gnu/packages/patches/pyqt-configure.patch			\
+  gnu/packages/patches/python-2.7-search-paths.patch		\
+  gnu/packages/patches/python-3-search-paths.patch		\
   gnu/packages/patches/python-disable-ssl-test.patch		\
   gnu/packages/patches/python-fix-tests.patch			\
-  gnu/packages/patches/python-libffi-mips-n32-fix.patch		\
   gnu/packages/patches/python2-rdflib-drop-sparqlwrapper.patch	\
-  gnu/packages/patches/python2-sqlite-3.8.4-test-fix.patch	\
   gnu/packages/patches/python2-pygobject-2-gi-info-type-error-domain.patch \
-  gnu/packages/patches/qemu-CVE-2015-3209.patch			\
-  gnu/packages/patches/qemu-CVE-2015-3456.patch			\
-  gnu/packages/patches/qemu-CVE-2015-4037.patch			\
-  gnu/packages/patches/qemu-CVE-2015-4103.patch			\
-  gnu/packages/patches/qemu-CVE-2015-4104.patch			\
-  gnu/packages/patches/qemu-CVE-2015-4105.patch			\
-  gnu/packages/patches/qemu-CVE-2015-4106-pt1.patch		\
-  gnu/packages/patches/qemu-CVE-2015-4106-pt2.patch		\
-  gnu/packages/patches/qemu-CVE-2015-4106-pt3.patch		\
-  gnu/packages/patches/qemu-CVE-2015-4106-pt4.patch		\
-  gnu/packages/patches/qemu-CVE-2015-4106-pt5.patch		\
-  gnu/packages/patches/qemu-CVE-2015-4106-pt6.patch		\
-  gnu/packages/patches/qemu-CVE-2015-4106-pt7.patch		\
-  gnu/packages/patches/qemu-CVE-2015-4106-pt8.patch		\
+  gnu/packages/patches/qemu-CVE-2015-6855.patch			\
   gnu/packages/patches/qt4-ldflags.patch			\
-  gnu/packages/patches/qt4-tests.patch				\
-  gnu/packages/patches/qt5-conflicting-typedefs.patch		\
-  gnu/packages/patches/qt5-runpath.patch			\
   gnu/packages/patches/ratpoison-shell.patch			\
   gnu/packages/patches/readline-link-ncurses.patch		\
-  gnu/packages/patches/ripperx-libm.patch			\
+  gnu/packages/patches/ripperx-missing-file.patch		\
   gnu/packages/patches/sed-hurd-path-max.patch			\
   gnu/packages/patches/scheme48-tests.patch			\
   gnu/packages/patches/scotch-test-threading.patch		\
@@ -615,12 +634,10 @@ dist_patch_DATA =						\
   gnu/packages/patches/slim-config.patch			\
   gnu/packages/patches/slim-sigusr1.patch			\
   gnu/packages/patches/soprano-find-clucene.patch		\
-  gnu/packages/patches/subversion-sqlite-3.8.9-fix.patch	\
   gnu/packages/patches/superlu-dist-scotchmetis.patch		\
   gnu/packages/patches/tar-d_ino_in_dirent-fix.patch		\
   gnu/packages/patches/tar-skip-unreliable-tests.patch		\
   gnu/packages/patches/tcsh-fix-autotest.patch			\
-  gnu/packages/patches/teckit-cstdio.patch			\
   gnu/packages/patches/texi2html-document-encoding.patch	\
   gnu/packages/patches/texi2html-i18n.patch			\
   gnu/packages/patches/tidy-CVE-2015-5522+5523.patch		\
@@ -632,29 +649,28 @@ dist_patch_DATA =						\
   gnu/packages/patches/unzip-CVE-2014-8140.patch		\
   gnu/packages/patches/unzip-CVE-2014-8141.patch		\
   gnu/packages/patches/unzip-CVE-2014-9636.patch		\
+  gnu/packages/patches/unzip-CVE-2015-7696.patch		\
+  gnu/packages/patches/unzip-CVE-2015-7697.patch		\
   gnu/packages/patches/unzip-allow-greater-hostver-values.patch	\
-  gnu/packages/patches/unzip-increase-size-of-cfactorstr.patch	\
+  gnu/packages/patches/unzip-attribs-overflow.patch		\
+  gnu/packages/patches/unzip-overflow-on-invalid-input.patch	\
+  gnu/packages/patches/unzip-format-secure.patch		\
   gnu/packages/patches/unzip-initialize-symlink-flag.patch	\
+  gnu/packages/patches/unzip-overflow-long-fsize.patch		\
   gnu/packages/patches/unzip-remove-build-date.patch		\
   gnu/packages/patches/util-linux-tests.patch			\
   gnu/packages/patches/upower-builddir.patch			\
-  gnu/packages/patches/valgrind-glibc-2.21.patch		\
+  gnu/packages/patches/valgrind-enable-arm.patch		\
   gnu/packages/patches/vpnc-script.patch			\
   gnu/packages/patches/vtk-mesa-10.patch			\
   gnu/packages/patches/w3m-fix-compile.patch			\
+  gnu/packages/patches/webkitgtk-2.4-sql-init-string.patch	\
   gnu/packages/patches/weex-vacopy.patch			\
+  gnu/packages/patches/wicd-bitrate-none-fix.patch		\
+  gnu/packages/patches/wicd-get-selected-profile-fix.patch	\
   gnu/packages/patches/wicd-template-instantiation.patch	\
   gnu/packages/patches/wicd-urwid-1.3.patch			\
   gnu/packages/patches/wmctrl-64-fix.patch			\
-  gnu/packages/patches/wpa-supplicant-CVE-2015-1863.patch	\
-  gnu/packages/patches/wpa-supplicant-2015-2-fix.patch		\
-  gnu/packages/patches/wpa-supplicant-2015-3-fix.patch		\
-  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt1.patch	\
-  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt2.patch	\
-  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt3.patch	\
-  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt4.patch	\
-  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt5.patch	\
-  gnu/packages/patches/wpa-supplicant-2015-5-fix.patch		\
   gnu/packages/patches/xf86-video-ark-remove-mibstore.patch	\
   gnu/packages/patches/xf86-video-ast-remove-mibstore.patch	\
   gnu/packages/patches/xf86-video-geode-glibc-2.20.patch	\
@@ -675,6 +691,8 @@ dist_patch_DATA =						\
   gnu/packages/patches/xf86-video-trident-remove-mibstore.patch	\
   gnu/packages/patches/xf86-video-vmware-glibc-2.20.patch	\
   gnu/packages/patches/xfce4-panel-plugins.patch		\
+  gnu/packages/patches/xfce4-session-fix-xflock4.patch		\
+  gnu/packages/patches/xfce4-settings-defaults.patch		\
   gnu/packages/patches/xmodmap-asprintf.patch 			\
   gnu/packages/patches/zathura-plugindir-environment-variable.patch
 

gnu.scm

@@ -34,7 +34,7 @@
       '((gnu system)
         (gnu system file-systems)
         (gnu system grub)                         ; 'grub-configuration'
-        (gnu system linux)                        ; 'base-pam-services'
+        (gnu system pam)
         (gnu system shadow)                       ; 'user-account'
         (gnu system linux-initrd)
         (gnu system nss)

gnu/build/file-systems.scm

@@ -323,6 +323,10 @@ corresponds to the symbols listed in FLAGS."
       (()
        0))))
 
+(define (regular-file? file-name)
+  "Return #t if FILE-NAME is a regular file."
+  (eq? (stat:type (stat file-name)) 'regular))
+
 (define* (mount-file-system spec #:key (root "/root"))
   "Mount the file system described by SPEC under ROOT.  SPEC must have the
 form:
@@ -339,7 +343,16 @@ run a file system check."
            (flags       (mount-flags->bit-mask flags)))
        (when check?
          (check-file-system source type))
-       (mkdir-p mount-point)
+
+       ;; Create the mount point.  Most of the time this is a directory, but
+       ;; in the case of a bind mount, a regular file may be needed.
+       (if (and (= MS_BIND (logand flags MS_BIND))
+                (regular-file? source))
+           (unless (file-exists? mount-point)
+             (mkdir-p (dirname mount-point))
+             (call-with-output-file mount-point (const #t)))
+           (mkdir-p mount-point))
+
        (mount source mount-point type flags options)
 
        ;; For read-only bind mounts, an extra remount is needed, as per

gnu/build/linux-boot.scm

@@ -48,7 +48,7 @@
 ;;; Code:
 
 (define* (mount-essential-file-systems #:key (root "/"))
-  "Mount /proc and /sys under ROOT."
+  "Mount /dev, /proc, and /sys under ROOT."
   (define (scope dir)
     (string-append root
                    (if (string-suffix? "/" root)
@@ -60,6 +60,10 @@
     (mkdir (scope "proc")))
   (mount "none" (scope "proc") "proc")
 
+  (unless (file-exists? (scope "dev"))
+    (mkdir (scope "dev")))
+  (mount "none" (scope "dev") "devtmpfs")
+
   (unless (file-exists? (scope "sys"))
     (mkdir (scope "sys")))
   (mount "none" (scope "sys") "sysfs"))
@@ -71,7 +75,7 @@
                 (unless (file-exists? target)
                   (mkdir target))
                 (mount dir target "" MS_MOVE)))
-            '("/proc" "/sys")))
+            '("/dev" "/proc" "/sys")))
 
 (define (linux-command-line)
   "Return the Linux kernel command line as a list of strings."
@@ -100,7 +104,7 @@ with the given MAJOR number, starting with MINOR."
 
 (define* (make-essential-device-nodes #:key (root "/"))
   "Make essential device nodes under ROOT/dev."
-  ;; The hand-made udev!
+  ;; The hand-made devtmpfs/udev!
 
   (define (scope dir)
     (string-append root
@@ -255,7 +259,8 @@ UNIONFS."
         (mount "none" "/rw-root" "tmpfs")
 
         ;; We want read-write /dev nodes.
-        (make-essential-device-nodes #:root "/rw-root")
+        (mkdir-p "/rw-root/dev")
+        (mount "none" "/rw-root/dev" "devtmpfs")
 
         ;; Make /root a union of the tmpfs and the actual root.  Use
         ;; 'max_files' to set a high RLIMIT_NOFILE for the unionfs process
@@ -385,9 +390,6 @@ to it are lost."
          (unless (configure-qemu-networking)
            (display "network interface is DOWN\n")))
 
-       ;; Make /dev nodes.
-       (make-essential-device-nodes)
-
        ;; Prepare the real root file system under /root.
        (unless (file-exists? "/root")
          (mkdir "/root"))
@@ -405,10 +407,6 @@ to it are lost."
                                    #:volatile-root? volatile-root?)
            (mount "none" "/root" "tmpfs"))
 
-       (unless (file-exists? "/root/dev")
-         (mkdir "/root/dev")
-         (make-essential-device-nodes #:root "/root"))
-
        ;; Mount the specified file systems.
        (for-each mount-file-system
                  (remove root-mount-point? mounts))

gnu/build/linux-container.scm

@@ -19,16 +19,36 @@
 (define-module (gnu build linux-container)
   #:use-module (ice-9 format)
   #:use-module (ice-9 match)
+  #:use-module (ice-9 rdelim)
   #:use-module (srfi srfi-98)
   #:use-module (guix utils)
   #:use-module (guix build utils)
   #:use-module (guix build syscalls)
   #:use-module ((gnu build file-systems) #:select (mount-file-system))
-  #:export (%namespaces
+  #:export (user-namespace-supported?
+            unprivileged-user-namespace-supported?
+            setgroups-supported?
+            %namespaces
             run-container
             call-with-container
             container-excursion))
 
+(define (user-namespace-supported?)
+  "Return #t if user namespaces are supported on this system."
+  (file-exists? "/proc/self/ns/user"))
+
+(define (unprivileged-user-namespace-supported?)
+  "Return #t if user namespaces can be created by unprivileged users."
+  (let ((userns-file "/proc/sys/kernel/unprivileged_userns_clone"))
+    (if (file-exists? userns-file)
+        (string=? "1" (call-with-input-file userns-file read-string))
+        #t)))
+
+(define (setgroups-supported?)
+  "Return #t if the setgroups proc file, introduced in Linux-libre 3.19,
+exists."
+  (file-exists? "/proc/self/setgroups"))
+
 (define %namespaces
   '(mnt pid ipc uts user net))
 
@@ -36,7 +56,9 @@
   "Apply THUNK, but exit with a status code of 1 if it fails."
   (dynamic-wind
     (const #t)
-    thunk
+    (lambda ()
+      (thunk)
+      (primitive-exit 0))
     (lambda ()
       (primitive-exit 1))))
 
@@ -55,6 +77,9 @@ to ROOT, then make ROOT the new root directory for the process."
   (define (scope dir)
     (string-append root dir))
 
+  (define (touch file-name)
+    (call-with-output-file file-name (const #t)))
+
   (define (bind-mount src dest)
     (mount src dest "none" MS_BIND))
 
@@ -89,8 +114,7 @@ to ROOT, then make ROOT the new root directory for the process."
   (for-each (lambda (device)
               (when (file-exists? device)
                 ;; Create the mount point file.
-                (call-with-output-file (scope device)
-                  (const #t))
+                (touch (scope device))
                 (bind-mount device (scope device))))
             '("/dev/null"
               "/dev/zero"
@@ -101,6 +125,15 @@ to ROOT, then make ROOT the new root directory for the process."
               "/dev/ptmx"
               "/dev/fuse"))
 
+  ;; Setup the container's /dev/console by bind mounting the pseudo-terminal
+  ;; associated with standard input.
+  (let ((in      (current-input-port))
+        (console (scope "/dev/console")))
+    (when (isatty? in)
+      (touch console)
+      (chmod console #o600)
+      (bind-mount (ttyname in) console)))
+
   ;; Setup standard input/output/error.
   (symlink "/proc/self/fd"   (scope "/dev/fd"))
   (symlink "/proc/self/fd/0" (scope "/dev/stdin"))
@@ -120,23 +153,17 @@ to ROOT, then make ROOT the new root directory for the process."
     (umount "real-root" MNT_DETACH)
     (rmdir "real-root")))
 
-(define (initialize-user-namespace pid)
-  "Configure the user namespace for PID."
+(define (initialize-user-namespace pid host-uids)
+  "Configure the user namespace for PID.  HOST-UIDS specifies the number of
+host user identifiers to map into the user namespace."
   (define proc-dir
     (string-append "/proc/" (number->string pid)))
 
   (define (scope file)
     (string-append proc-dir file))
 
-  ;; Only root can map more than a single uid/gid.  A range of 65536 uid/gids
-  ;; is used to cover 16 bits worth of users and groups, which is sufficient
-  ;; for most cases.
-  ;;
-  ;; See also: http://www.freedesktop.org/software/systemd/man/systemd-nspawn.html#--private-users=
-  (let* ((uid       (getuid))
-         (gid       (getgid))
-         (uid-range (if (zero? uid) 65536 1))
-         (gid-range (if (zero? gid) 65536 1)))
+  (let ((uid (getuid))
+        (gid (getgid)))
 
     ;; Only root can write to the gid map without first disabling the
     ;; setgroups syscall.
@@ -149,14 +176,15 @@ to ROOT, then make ROOT the new root directory for the process."
     ;; within the container.
     (call-with-output-file (scope "/uid_map")
       (lambda (port)
-        (format port "0 ~d ~d" uid uid-range)))
+        (format port "0 ~d ~d" uid host-uids)))
     (call-with-output-file (scope "/gid_map")
       (lambda (port)
-        (format port "0 ~d ~d" gid gid-range)))))
+        (format port "0 ~d ~d" gid host-uids)))))
 
 (define (namespaces->bit-mask namespaces)
   "Return the number suitable for the 'flags' argument of 'clone' that
 corresponds to the symbols in NAMESPACES."
+  ;; Use the same flags as fork(3) in addition to the namespace flags.
   (apply logior SIGCHLD
          (map (match-lambda
                ('mnt  CLONE_NEWNS)
@@ -167,12 +195,13 @@ corresponds to the symbols in NAMESPACES."
                ('net  CLONE_NEWNET))
               namespaces)))
 
-(define (run-container root mounts namespaces thunk)
+(define (run-container root mounts namespaces host-uids thunk)
   "Run THUNK in a new container process and return its PID.  ROOT specifies
 the root directory for the container.  MOUNTS is a list of file system specs
 that specify the mapping of host file systems into the container.  NAMESPACES
 is a list of symbols that correspond to the possible Linux namespaces: mnt,
-ipc, uts, user, and net."
+ipc, uts, user, and net.  HOST-UIDS specifies the number of
+host user identifiers to map into the user namespace."
   ;; The parent process must initialize the user namespace for the child
   ;; before it can boot.  To negotiate this, a pipe is used such that the
   ;; child process blocks until the parent writes to it.
@@ -196,26 +225,31 @@ ipc, uts, user, and net."
              (thunk))))
          (pid
           (when (memq 'user namespaces)
-            (initialize-user-namespace pid))
+            (initialize-user-namespace pid host-uids))
           ;; TODO: Initialize cgroups.
           (close in)
           (write 'ready out)
           (close out)
           pid))))))
 
-(define* (call-with-container mounts thunk #:key (namespaces %namespaces))
+(define* (call-with-container mounts thunk #:key (namespaces %namespaces)
+                              (host-uids 1))
   "Run THUNK in a new container process and return its exit status.
 MOUNTS is a list of file system specs that specify the mapping of host file
 systems into the container.  NAMESPACES is a list of symbols corresponding to
 the identifiers for Linux namespaces: mnt, ipc, uts, pid, user, and net.  By
-default, all namespaces are used.
+default, all namespaces are used.  HOST-UIDS is the number of host user
+identifiers to map into the container's user namespace, if there is one.  By
+default, only a single uid/gid, that of the current user, is mapped into the
+container.  The host user that creates the container is the root user (uid/gid
+0) within the container.  Only root can map more than a single uid/gid.
 
 Note that if THUNK needs to load any additional Guile modules, the relevant
 module files must be present in one of the mappings in MOUNTS and the Guile
 load path must be adjusted as needed."
   (call-with-temporary-directory
    (lambda (root)
-     (let ((pid (run-container root mounts namespaces thunk)))
+     (let ((pid (run-container root mounts namespaces host-uids thunk)))
        ;; Catch SIGINT and kill the container process.
        (sigaction SIGINT
          (lambda (signum)

gnu/build/linux-initrd.scm

@@ -72,7 +72,9 @@ COMPRESS? is true, compress it using GZIP.  On success, return OUTPUT."
                                #:file->header cpio:file->cpio-header*)))
 
   (or (not compress?)
-      (and (zero? (system* gzip "--best" output))
+      ;; Use '--no-name' so that gzip records neither a file name nor a time
+      ;; stamp in its output.
+      (and (zero? (system* gzip "--best" "--no-name" output))
            (rename-file (string-append output ".gz")
                         output))
       output))

gnu/build/vm.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2013, 2014 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2013, 2014, 2015 Ludovic Courtès <ludo@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -21,13 +21,26 @@
   #:use-module (guix build store-copy)
   #:use-module (gnu build linux-boot)
   #:use-module (gnu build install)
+  #:use-module (guix records)
   #:use-module (ice-9 match)
   #:use-module (ice-9 regex)
+  #:use-module (srfi srfi-1)
+  #:use-module (srfi srfi-9)
   #:use-module (srfi srfi-26)
   #:export (qemu-command
             load-in-linux-vm
             format-partition
-            initialize-root-partition
+
+            partition
+            partition?
+            partition-device
+            partition-size
+            partition-file-system
+            partition-label
+            partition-bootable?
+            partition-initializer
+
+            root-partition-initializer
             initialize-partition-table
             initialize-hard-disk))
 
@@ -110,24 +123,84 @@ the #:references-graphs parameter of 'derivation'."
         (mkdir output)
         (copy-recursively "xchg" output))))
 
-(define* (initialize-partition-table device partition-size
+
+;;;
+;;; Partitions.
+;;;
+
+(define-record-type* <partition> partition make-partition
+  partition?
+  (device      partition-device (default #f))
+  (size        partition-size)
+  (file-system partition-file-system (default "ext4"))
+  (label       partition-label (default #f))
+  (bootable?   partition-bootable? (default #f))
+  (initializer partition-initializer (default (const #t))))
+
+(define (fold2 proc seed1 seed2 lst)              ;TODO: factorize
+  "Like `fold', but with a single list and two seeds."
+  (let loop ((result1 seed1)
+             (result2 seed2)
+             (lst     lst))
+    (if (null? lst)
+        (values result1 result2)
+        (call-with-values
+            (lambda () (proc (car lst) result1 result2))
+          (lambda (result1 result2)
+            (loop result1 result2 (cdr lst)))))))
+
+(define* (initialize-partition-table device partitions
                                      #:key
-                                     bootable?
                                      (label-type "msdos")
                                      (offset (expt 2 20)))
-  "Create on DEVICE a partition table of type LABEL-TYPE, with a single
-partition of PARTITION-SIZE bytes starting at OFFSET bytes.  When BOOTABLE? is
-true, set the bootable flag on the partition.  Return #t on success."
-  (format #t "creating partition table with a ~a B partition...\n"
-          partition-size)
-  (unless (zero? (apply system* "parted" device "mklabel" label-type
-                        "mkpart" "primary" "ext2"
-                        (format #f "~aB" offset)
-                        (format #f "~aB" partition-size)
-                        (if bootable?
-                            '("set" "1" "boot" "on")
-                            '())))
-    (error "failed to create partition table")))
+  "Create on DEVICE a partition table of type LABEL-TYPE, containing the given
+PARTITIONS (a list of <partition> objects), starting at OFFSET bytes.  On
+success, return PARTITIONS with their 'device' field changed to reflect their
+actual /dev name based on DEVICE."
+  (define (partition-options part offset index)
+    (cons* "mkpart" "primary" "ext2"
+           (format #f "~aB" offset)
+           (format #f "~aB" (+ offset (partition-size part)))
+           (if (partition-bootable? part)
+               `("set" ,(number->string index) "boot" "on")
+               '())))
+
+  (define (options partitions offset)
+    (let loop ((partitions partitions)
+               (offset     offset)
+               (index      1)
+               (result     '()))
+      (match partitions
+        (()
+         (concatenate (reverse result)))
+        ((head tail ...)
+         (loop tail
+               ;; Leave one sector (512B) between partitions to placate
+               ;; Parted.
+               (+ offset 512 (partition-size head))
+               (+ 1 index)
+               (cons (partition-options head offset index)
+                     result))))))
+
+  (format #t "creating partition table with ~a partitions...\n"
+          (length partitions))
+  (unless (zero? (apply system* "parted" "--script"
+                        device "mklabel" label-type
+                        (options partitions offset)))
+    (error "failed to create partition table"))
+
+  ;; Set the 'device' field of each partition.
+  (reverse
+   (fold2 (lambda (part result index)
+            (values (cons  (partition
+                            (inherit part)
+                            (device (string-append device
+                                                   (number->string index))))
+                           result)
+                    (+ 1 index)))
+          '()
+          1
+          partitions)))
 
 (define MS_BIND 4096)                             ; <sys/mounts.h> again!
 
@@ -143,40 +216,67 @@ volume name."
                             '())))
     (error "failed to create partition")))
 
-(define* (initialize-root-partition target-directory
-                                    #:key copy-closures? register-closures?
-                                    closures system-directory)
-  "Initialize the root partition mounted at TARGET-DIRECTORY."
-  (define target-store
-    (string-append target-directory (%store-directory)))
+(define (initialize-partition partition)
+  "Format PARTITION, a <partition> object with a non-#f 'device' field, mount
+it, run its initializer, and unmount it."
+  (let ((target "/fs"))
+   (format-partition (partition-device partition)
+                     (partition-file-system partition)
+                     #:label (partition-label partition))
+   (mkdir-p target)
+   (mount (partition-device partition) target
+          (partition-file-system partition))
 
-  (when copy-closures?
-    ;; Populate the store.
-    (populate-store (map (cut string-append "/xchg/" <>) closures)
-                    target-directory))
+   ((partition-initializer partition) target)
 
-  ;; Populate /dev.
-  (make-essential-device-nodes #:root target-directory)
+   (umount target)
+   partition))
 
-  ;; Optionally, register the inputs in the image's store.
-  (when register-closures?
-    (unless copy-closures?
-      ;; XXX: 'guix-register' wants to palpate the things it registers, so
-      ;; bind-mount the store on the target.
-      (mkdir-p target-store)
-      (mount (%store-directory) target-store "" MS_BIND))
+(define* (root-partition-initializer #:key (closures '())
+                                     copy-closures?
+                                     (register-closures? #t)
+                                     system-directory)
+  "Return a procedure to initialize a root partition.
 
-    (display "registering closures...\n")
-    (for-each (lambda (closure)
-                (register-closure target-directory
-                                  (string-append "/xchg/" closure)))
-              closures)
-    (unless copy-closures?
-      (system* "umount" target-store)))
+If REGISTER-CLOSURES? is true, register all of CLOSURES is the partition's
+store.  If COPY-CLOSURES? is true, copy all of CLOSURES to the partition.
+SYSTEM-DIRECTORY is the name of the directory of the 'system' derivation."
+  (lambda (target)
+    (define target-store
+      (string-append target (%store-directory)))
 
-  ;; Add the non-store directories and files.
-  (display "populating...\n")
-  (populate-root-file-system system-directory target-directory))
+    (when copy-closures?
+      ;; Populate the store.
+      (populate-store (map (cut string-append "/xchg/" <>) closures)
+                      target))
+
+    ;; Populate /dev.
+    (make-essential-device-nodes #:root target)
+
+    ;; Optionally, register the inputs in the image's store.
+    (when register-closures?
+      (unless copy-closures?
+        ;; XXX: 'guix-register' wants to palpate the things it registers, so
+        ;; bind-mount the store on the target.
+        (mkdir-p target-store)
+        (mount (%store-directory) target-store "" MS_BIND))
+
+      (display "registering closures...\n")
+      (for-each (lambda (closure)
+                  (register-closure target
+                                    (string-append "/xchg/" closure)))
+                closures)
+      (unless copy-closures?
+        (umount target-store)))
+
+    ;; Add the non-store directories and files.
+    (display "populating...\n")
+    (populate-root-file-system system-directory target)
+
+    ;; 'guix-register' resets timestamps and everything, so no need to do it
+    ;; once more in that case.
+    (unless register-closures?
+      (reset-timestamps target))))
 
 (define (register-grub.cfg-root target grub.cfg)
   "On file system TARGET, register GRUB.CFG as a GC root."
@@ -186,56 +286,29 @@ volume name."
 
 (define* (initialize-hard-disk device
                                #:key
-                               system-directory
                                grub.cfg
-                               disk-image-size
-                               (file-system-type "ext4")
-                               file-system-label
-                               (closures '())
-                               copy-closures?
-                               (bootable? #t)
-                               (register-closures? #t))
-  "Initialize DEVICE, a disk of DISK-IMAGE-SIZE bytes, with a FILE-SYSTEM-TYPE
-partition with (optionally) FILE-SYSTEM-LABEL as its volume name, and with
-GRUB installed.  When BOOTABLE? is true, set the bootable flag on that
-partition.
+                               (partitions '()))
+  "Initialize DEVICE as a disk containing all the <partition> objects listed
+in PARTITIONS, and using GRUB.CFG as its bootloader configuration file.
 
-If REGISTER-CLOSURES? is true, register all of CLOSURES is the partition's
-store.  If COPY-CLOSURES? is true, copy all of CLOSURES to the partition.
-SYSTEM-DIRECTORY is the name of the directory of the 'system' derivation."
-  (define target-directory
-    "/fs")
+Each partition is initialized by calling its 'initializer' procedure,
+passing it a directory name where it is mounted."
+  (let* ((partitions (initialize-partition-table device partitions))
+         (root       (find partition-bootable? partitions))
+         (target     "/fs"))
+    (unless root
+      (error "no bootable partition specified" partitions))
 
-  (define partition
-    (string-append device "1"))
+    (for-each initialize-partition partitions)
 
-  (initialize-partition-table device
-                              (- disk-image-size (* 5 (expt 2 20)))
-                              #:bootable? bootable?)
+    (display "mounting root partition...\n")
+    (mkdir-p target)
+    (mount (partition-device root) target (partition-file-system root))
+    (install-grub grub.cfg device target)
 
-  (format-partition partition file-system-type
-                    #:label file-system-label)
+    ;; Register GRUB.CFG as a GC root.
+    (register-grub.cfg-root target grub.cfg)
 
-  (display "mounting partition...\n")
-  (mkdir target-directory)
-  (mount partition target-directory file-system-type)
-
-  (initialize-root-partition target-directory
-                             #:system-directory system-directory
-                             #:copy-closures? copy-closures?
-                             #:register-closures? register-closures?
-                             #:closures closures)
-
-  (install-grub grub.cfg device target-directory)
-
-  ;; Register GRUB.CFG as a GC root.
-  (register-grub.cfg-root target-directory grub.cfg)
-
-  ;; 'guix-register' resets timestamps and everything, so no need to do it
-  ;; once more in that case.
-  (unless register-closures?
-    (reset-timestamps target-directory))
-
-  (zero? (system* "umount" target-directory)))
+    (umount target)))
 
 ;;; vm.scm ends here

gnu/packages.scm

@@ -24,6 +24,7 @@
   #:use-module (guix utils)
   #:use-module ((guix ftp-client) #:select (ftp-open))
   #:use-module (guix gnu-maintenance)
+  #:use-module (guix upstream)
   #:use-module (ice-9 ftw)
   #:use-module (ice-9 vlist)
   #:use-module (ice-9 match)
@@ -377,14 +378,18 @@ it."
       (when (false-if-exception (gnu-package? package))
         (let ((name      (package-name package))
               (full-name (package-full-name package)))
+          ;; XXX: This could work with non-GNU packages as well.  However,
+          ;; GNU's FTP-based updater would be too slow if it weren't memoized,
+          ;; and the generic interface in (guix upstream) doesn't support
+          ;; that.
           (match (waiting (latest-release name
                                           #:ftp-open ftp-open*
                                           #:ftp-close (const #f))
                           (_ "looking for the latest release of GNU ~a...") name)
-            ((? gnu-release? release)
+            ((? upstream-source? source)
              (let ((latest-version
-                    (string-append (gnu-release-package release) "-"
-                                   (gnu-release-version release))))
+                    (string-append (upstream-source-package source) "-"
+                                   (upstream-source-version source))))
               (when (version>? latest-version full-name)
                 (format (current-error-port)
                         (_ "~a: note: using ~a \

gnu/packages/aarddict.scm

@@ -1,70 +0,0 @@
-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
-
-(define-module (gnu packages aarddict)
-  #:use-module ((guix licenses) #:select (gpl3))
-  #:use-module (guix packages)
-  #:use-module (guix download)
-  #:use-module (guix build-system python)
-  #:use-module (gnu packages python)
-  #:use-module (gnu packages qt))
-
-(define-public aarddict
-  (package
-    (name "aarddict")
-    (version "0.9.3")
-    (source
-     (origin
-      (method url-fetch)
-      (uri (string-append "https://github.com/aarddict/desktop/archive/"
-                          version ".tar.gz"))
-      (file-name (string-append name "-" version ".tar.gz"))
-      (sha256
-       (base32
-        "12h7m0z7nd7rg8avpi9syd265k0rhh4vbdh464nq0jzdg8m9p28c"))))
-    (build-system python-build-system)
-    (inputs
-     `(("python2-pyicu" ,python2-pyicu)
-       ("python2-pyqt-4" ,python2-pyqt-4)
-       ("python2-setuptools" ,python2-setuptools)
-       ("python2-simplejson" ,python2-simplejson)
-       ("python2-sip" ,python2-sip)))
-    (arguments
-     `(#:python ,python-2 ; incompatible with Python 3
-       #:phases
-        (alist-cons-before
-         'build 'configure
-         ;; Force data into the output instead of the python package.
-         (lambda* (#:key outputs #:allow-other-keys)
-           (let ((out (assoc-ref outputs "out")))
-             (substitute* "setup.py"
-               (("sys.prefix") (string-append "'" out "'")))))
-         %standard-phases)))
-    (home-page "http://aarddict.org/index.html")
-    (synopsis
-     "Dictionary program and offline Wikipedia reader")
-    (description
-     "Aard Dictionary is a free, fast, easy to use word lookup program that
-looks up words fast even with huge dictionaries like English Wikipedia;
-looks up words in multiple dictionaries in multiple languages without
-switching;
-works great as offline Wikipedia reader;
-is keyboard navigation friendly;
-has efficient, highly compressed dictionary data storage format with
-ability to verify data integrity built-in.")
-    (license gpl3)))

gnu/packages/abduco.scm

@@ -0,0 +1,48 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2015 Leo Famulari <leo@famulari.name>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages abduco)
+  #:use-module (guix build-system gnu)
+  #:use-module (guix download)
+  #:use-module (guix licenses)
+  #:use-module (guix packages))
+
+(define-public abduco
+  (package
+   (name "abduco")
+   (version "0.4")
+   (source (origin
+            (method url-fetch)
+            (uri (string-append
+                  "http://www.brain-dump.org/projects/abduco/abduco-"
+                  version ".tar.gz"))
+            (sha256
+             (base32 "1fxwg2s5w183p0rwzsxizy9jdnilv5qqs647l3wl3khny6fp58xx"))))
+   (build-system gnu-build-system)
+   (arguments
+    `(#:make-flags (list "CC=gcc"
+                         (string-append "PREFIX=" (assoc-ref %outputs "out")))
+      #:phases (modify-phases %standard-phases
+                 (delete 'configure)
+                 (delete 'check)))) ; no test suite
+   (synopsis "Session management in a clean and simple way")
+   (description "abduco provides session management i.e. it allows programs to
+be run independently from their controlling terminal.  That is, programs can
+be detached---run in the background---and then later reattached.")
+   (home-page "http://www.brain-dump.org/projects/abduco/")
+   (license isc)))

gnu/packages/abiword.scm

@@ -99,8 +99,15 @@
         ("pkg-config" ,pkg-config)))
     (home-page "http://abisource.org/")
     (synopsis "Word processing program")
-    (description
-      "AbiWord is a word processing program.  It is rapidly becoming a state
-of the art word processor, with lots of features useful for your daily work,
-personal needs, or for just some good old typing fun.")
+
+    ;; HACKERS: The comment below is here so that it shows up early in the
+    ;; .pot file.
+
+    ;; TRANSLATORS: Dear translator, We would like to inform you that package
+    ;; descriptions may occasionally include Texinfo markup.  Texinfo markup
+    ;; looks like "@code{rm -rf}", "@emph{important}", etc.  When translating,
+    ;; please leave markup as is.
+    (description "AbiWord is a word processing program.  It is rapidly
+becoming a state of the art word processor, with lots of features useful for
+your daily work, personal needs, or for just some good old typing fun.")
     (license license:gpl2+)))

gnu/packages/acl.scm

@@ -26,6 +26,7 @@
   #:use-module (gnu packages perl)
   #:use-module (guix packages)
   #:use-module (guix download)
+  #:use-module (gnu packages)
   #:use-module (guix build-system gnu))
 
 (define-public acl
@@ -39,7 +40,8 @@
                           version ".src.tar.gz"))
       (sha256
        (base32
-        "08qd9s3wfhv0ajswsylnfwr5h0d7j9d4rgip855nrh400nxp940p"))))
+        "08qd9s3wfhv0ajswsylnfwr5h0d7j9d4rgip855nrh400nxp940p"))
+      (patches (list (search-patch "acl-hurd-path-max.patch")))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f   ; FIXME: Investigate test suite failures
@@ -58,11 +60,8 @@
     (inputs `(("attr" ,attr)))
     (native-inputs
      `(("gettext" ,gnu-gettext)
-       ("perl" ,perl)
-       ("sed" ,sed)))
-
-    (home-page
-     "http://savannah.nongnu.org/projects/acl")
+       ("perl" ,perl)))
+    (home-page "http://savannah.nongnu.org/projects/acl")
     (synopsis
      "Library and tools for manipulating access control lists")
     (description

gnu/packages/admin.scm

@@ -5,6 +5,7 @@
 ;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
 ;;; Copyright © 2015 Alex Sassmannshausen <alex.sassmannshausen@gmail.com>
+;;; Copyright © 2015 Eric Dvorsak <eric@dvorsak.fr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -29,6 +30,7 @@
   #:use-module (guix git-download)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system trivial)
   #:use-module (gnu packages)
   #:use-module (gnu packages base)
@@ -58,29 +60,43 @@
   #:use-module (gnu packages man))
 
 (define-public dmd
-  (package
-    (name "dmd")
-    (version "0.2")
-    (source (origin
-             (method url-fetch)
-             (uri (string-append "ftp://alpha.gnu.org/gnu/dmd/dmd-"
-                                 version ".tar.gz"))
-             (sha256
-              (base32
-               "10fl4k96f17gqx2fv8iw9c61ld26gsk4bbrlfqckdmiimz1k175z"))))
-    (build-system gnu-build-system)
-    (arguments
-     '(#:configure-flags '("--localstatedir=/var")))
-    (native-inputs `(("pkg-config" ,pkg-config)))
-    (inputs `(("guile" ,guile-2.0)))
-    (synopsis "Daemon managing daemons")
-    (description
-     "GNU DMD is a daemon-managing daemon, meaning that it manages the
+  (let ((base-version "0.2")
+        (patch-level  "01"))
+    (package
+      (name "dmd")
+      (version (string-append base-version "." patch-level))
+      (source (origin
+                (method url-fetch)
+                (uri (string-append "ftp://alpha.gnu.org/gnu/dmd/dmd-"
+                                    base-version ".tar.gz"))
+                (sha256
+                 (base32
+                  "10fl4k96f17gqx2fv8iw9c61ld26gsk4bbrlfqckdmiimz1k175z"))
+                (patches
+                 (list (origin
+                         ;; This patch augments 'make-fork+exec-constructor' and
+                         ;; is used by a bunch of services.
+                         (method url-fetch)
+                         (uri (string-append
+                               "http://git.savannah.gnu.org/cgit/dmd.git/patch/"
+                               "?id=d1d0ff30b3ed2b86b0a3c9bc048d2a855f8e31e6"))
+                         (sha256
+                          (base32
+                           "1lqymypixfiyb72d6bn24m06ry2q1ljnnv0qrc89pbb4z9azaa4d"))
+                         (file-name "dmd-user-group.patch"))))))
+      (build-system gnu-build-system)
+      (arguments
+       '(#:configure-flags '("--localstatedir=/var")))
+      (native-inputs `(("pkg-config" ,pkg-config)))
+      (inputs `(("guile" ,guile-2.0)))
+      (synopsis "Daemon managing daemons")
+      (description
+       "GNU DMD is a daemon-managing daemon, meaning that it manages the
 execution of system services, replacing similar functionality found in
 typical init systems.  It provides dependency-handling through a convenient
 interface and is based on GNU Guile.")
-    (license license:gpl3+)
-    (home-page "http://www.gnu.org/software/dmd/")))
+      (license license:gpl3+)
+      (home-page "http://www.gnu.org/software/dmd/"))))
 
 (define-public dfc
   (package
@@ -175,17 +191,15 @@ client and server, a telnet client and server, and an rsh client and server.")
 (define-public shadow
   (package
     (name "shadow")
-    (version "4.1.5.1")
+    (version "4.2.1")
     (source (origin
-             ;; Shadow has no real upstream, and not even tarballs.
-             ;; See <https://lists.gnu.org/archive/html/guix-devel/2014-03/msg00233.html>.
-             (method git-fetch)
-             (uri (git-reference
-                   (url "git://git.debian.org/git/pkg-shadow/shadow")
-                   (commit (string-append "upstream/" version))))
-             (sha256
-              (base32
-               "1xx85d83kmacmjzqbamgydcjkwsqd5fi1s2wgwx6myq5wa39qx0n"))))
+              (method url-fetch)
+              (uri (string-append
+                    "http://pkg-shadow.alioth.debian.org/releases/"
+                    name "-" version ".tar.xz"))
+              (sha256
+               (base32
+                "0h9x1zdbq0pqmygmc1x459jraiqw4gqz8849v268crk78z8r621v"))))
     (build-system gnu-build-system)
     (arguments
      '(;; Assume System V `setpgrp (void)', which is the default on GNU
@@ -206,7 +220,7 @@ client and server, a telnet client and server, and an rsh client and server.")
                     ;; Remove `groups', which is already provided by Coreutils.
                     (let* ((out (assoc-ref outputs "out"))
                            (bin (string-append out "/bin"))
-                           (man (string-append out "/share/man/man1")))
+                           (man (string-append out "/share/man")))
                       (delete-file (string-append bin "/groups"))
                       (for-each delete-file (find-files man "^groups\\."))
                       #t))
@@ -414,6 +428,7 @@ connection alive.")
                      (zero? (system* "tar" "cf" "bind.tar.gz"
                                      "bind-9.9.5-P1"
                                      ;; avoid non-determinism in the archive
+                                     "--sort=name"
                                      "--mtime=@0"
                                      "--owner=root:0"
                                      "--group=root:0"))))
@@ -470,14 +485,14 @@ tools: server, client, and relay agent.")
 (define-public libpcap
   (package
     (name "libpcap")
-    (version "1.5.3")
+    (version "1.7.4")
     (source (origin
               (method url-fetch)
               (uri (string-append "http://www.tcpdump.org/release/libpcap-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "14wyjywrdi1ikaj6yc9c72m6m2r64z94lb0gm7k1a3q6q5cj3scs"))))
+                "1c28ykkizd7jqgzrfkg7ivqjlqs9p6lygp26bsw2i0z8hwhi3lvs"))))
     (build-system gnu-build-system)
     (native-inputs `(("bison" ,bison) ("flex" ,flex)))
     (arguments '(#:configure-flags '("--with-pcap=linux")
@@ -495,14 +510,14 @@ network statistics collection, security monitoring, network debugging, etc.")
 (define-public tcpdump
   (package
     (name "tcpdump")
-    (version "4.5.1")
+    (version "4.7.4")
     (source (origin
               (method url-fetch)
               (uri (string-append "http://www.tcpdump.org/release/tcpdump-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "15hb7zkzd66nag102qbv100hcnf7frglbkylmr8adwr8f5jkkaql"))))
+                "1byr8w6grk08fsq0444jmcz9ar89lq9nf4mjq2cny0w9k8k21rbb"))))
     (build-system gnu-build-system)
     (inputs `(("libpcap" ,libpcap)
               ("openssl" ,openssl)))
@@ -689,10 +704,10 @@ commands and their arguments.")
     ;; See <http://www.sudo.ws/sudo/license.html>.
     (license license:x11)))
 
-(define-public wpa-supplicant-light
+(define-public wpa-supplicant-minimal
   (package
-    (name "wpa-supplicant-light")
-    (version "2.4")
+    (name "wpa-supplicant-minimal")
+    (version "2.5")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -701,17 +716,7 @@ commands and their arguments.")
                     ".tar.gz"))
               (sha256
                (base32
-                "08li21q1wjn5chrv289w666il9ah1w419y3dkq2rl4wnq0rci385"))
-              (patches
-               (map search-patch '("wpa-supplicant-CVE-2015-1863.patch"
-                                   "wpa-supplicant-2015-2-fix.patch"
-                                   "wpa-supplicant-2015-3-fix.patch"
-                                   "wpa-supplicant-2015-4-fix-pt1.patch"
-                                   "wpa-supplicant-2015-4-fix-pt2.patch"
-                                   "wpa-supplicant-2015-4-fix-pt3.patch"
-                                   "wpa-supplicant-2015-4-fix-pt4.patch"
-                                   "wpa-supplicant-2015-4-fix-pt5.patch"
-                                   "wpa-supplicant-2015-5-fix.patch")))))
+                "05mkp5bx1c3z7h5biddsv0p49gkrq9ksany3anp4wdiv92p5prfc"))))
     (build-system gnu-build-system)
     (arguments
      '(#:phases (alist-replace
@@ -781,12 +786,12 @@ This package provides the 'wpa_supplicant' daemon and the 'wpa_cli' command.")
     (license license:bsd-3)))
 
 (define-public wpa-supplicant
-  (package (inherit wpa-supplicant-light)
+  (package (inherit wpa-supplicant-minimal)
     (name "wpa-supplicant")
     (inputs `(("dbus" ,dbus)
-              ,@(package-inputs wpa-supplicant-light)))
+              ,@(package-inputs wpa-supplicant-minimal)))
     (arguments
-     (substitute-keyword-arguments (package-arguments wpa-supplicant-light)
+     (substitute-keyword-arguments (package-arguments wpa-supplicant-minimal)
        ((#:phases phases)
         `(alist-cons-after
           'configure 'configure-for-dbus
@@ -1130,3 +1135,83 @@ degradation and failure.")
      "fdupes is a program for identifying duplicate files residing within
 specified directories.")
     (license license:expat)))
+
+(define-public graphios
+  (package
+   (name "graphios")
+   (version "2.0.3")
+   (source
+    (origin
+      (method url-fetch)
+      (uri (string-append
+            "https://pypi.python.org/packages/source/g/graphios/graphios-"
+            version ".tar.gz"))
+      (sha256
+       (base32
+        "1h87hvc315wg6lklbf4l7csd3n5pgljwrfli1p3nasdi0izgn66i"))))
+   (build-system python-build-system)
+   (arguments
+    ;; Be warned: Building with Python 3 succeeds, but the build process
+    ;; throws a syntax error that is ignored.
+    `(#:python ,python-2
+      #:phases
+      (modify-phases %standard-phases
+        (add-before 'build 'fix-setup.py
+          (lambda* (#:key outputs #:allow-other-keys)
+            ;; Fix hardcoded, unprefixed file names.
+            (let ((out (assoc-ref outputs "out")))
+              (substitute* '("setup.py")
+                (("/etc") (string-append out "/etc"))
+                (("/usr") out)
+                (("distro_ver = .*") "distro_ver = ''"))
+              #t))))))
+   (inputs
+    `(("python-setuptools" ,python2-setuptools)))
+   (home-page "https://github.com/shawn-sterling/graphios")
+   (synopsis "Emit Nagios metrics to Graphite, Statsd, and Librato")
+   (description
+    "Graphios is a script to emit nagios perfdata to various upstream metrics
+processing and time-series systems.  It's currently compatible with Graphite,
+Statsd, Librato and InfluxDB.  Graphios can emit Nagios metrics to any number
+of supported upstream metrics systems simultaneously.")
+   (license license:gpl2+)))
+
+(define-public ansible
+  (package
+    (name "ansible")
+    (version "1.9.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://pypi.python.org/packages/source/a/ansible/ansible-"
+             version
+             ".tar.gz"))
+       (sha256
+        (base32
+         "007fzgsqaahb0y4gjdxxmir9kcni7wph2z14jhqgpz88idrz8pn2"))))
+    (build-system python-build-system)
+    (native-inputs
+     `(("python2-setuptools" ,python2-setuptools)
+       ("python2-pycrypto" ,python2-pycrypto)
+       ("python2-httplib2" ,python2-httplib2)
+       ("python2-passlib" ,python2-passlib)
+       ("python2-nose" ,python2-nose)
+       ("python2-mock" ,python2-mock)
+       ("python2-jinja2" ,python2-jinja2)
+       ("python2-pyyaml" ,python2-pyyaml)
+       ("python2-paramiko" ,python2-paramiko)))
+    (inputs
+     `(("python2-pycrypto" ,python2-pycrypto)
+       ("python2-jinja2" ,python2-jinja2)
+       ("python2-pyyaml" ,python2-pyyaml)
+       ("python2-paramiko" ,python2-paramiko)))
+    (arguments
+     `(#:python ,python-2)) ; incompatible with Python 3
+    (home-page "http://ansible.com/")
+    (synopsis "Radically simple IT automation")
+    (description "Ansible is a radically simple IT automation system.  It
+handles configuration-management, application deployment, cloud provisioning,
+ad-hoc task-execution, and multinode orchestration - including trivializing
+things like zero downtime rolling updates with load balancers.")
+    (license license:gpl3+)))

gnu/packages/algebra.scm

@@ -20,12 +20,14 @@
 
 (define-module (gnu packages algebra)
   #:use-module (gnu packages)
+  #:use-module (gnu packages compression)
   #:use-module (gnu packages multiprecision)
   #:use-module (gnu packages mpi)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages readline)
   #:use-module (gnu packages flex)
-  #:use-module (guix licenses)
+  #:use-module (gnu packages xorg)
+  #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module (guix download)
   #:use-module (guix build-system gnu)
@@ -46,9 +48,10 @@
              (base32
               "0grw66b255r574lvll1bqccm5myj2m8ajzsjaygcyq9zjnnbnhhy"))))
    (build-system gnu-build-system)
-   (inputs `(("gmp" ,gmp)
-             ("mpfr" ,mpfr)
-             ("mpc"  ,mpc)))
+   (propagated-inputs
+     `(("gmp" ,gmp)
+       ("mpfr" ,mpfr)
+       ("mpc"  ,mpc))) ; Header files are included by mpfrcx.h.
    (synopsis "Arithmetic of polynomials over arbitrary precision numbers")
    (description
     "Mpfrcx is a library for the arithmetic of univariate polynomials over
@@ -57,9 +60,37 @@ on the rounding.  For the time being, only the few functions needed to
 implement the floating point approach to complex multiplication are
 implemented.  On the other hand, these comprise asymptotically fast
 multiplication routines such as Toom–Cook and the FFT.")
-   (license lgpl2.1+)
+   (license license:lgpl2.1+)
    (home-page "http://mpfrcx.multiprecision.org/")))
 
+(define-public cm
+  (package
+   (name "cm")
+   (version "0.2.1")
+   (source (origin
+            (method url-fetch)
+            (uri (string-append
+                  "http://www.multiprecision.org/cm/download/cm-"
+                  version ".tar.gz"))
+            (sha256
+             (base32
+              "1r5dx5qy0ka2sq26n9jll9iy4sjqg0jp5r3jnbjhpgxvmj8jbhq8"))))
+   (build-system gnu-build-system)
+   (propagated-inputs
+     `(("mpfrcx" ,mpfrcx)
+       ("zlib" ,zlib))) ; Header files included from cm_common.h.
+   (inputs
+     `(("pari-gp"  ,pari-gp)))
+   (synopsis "CM constructions for elliptic curves")
+   (description
+    "The CM software implements the construction of ring class fields of
+imaginary quadratic number fields and of elliptic curves with complex
+multiplication via floating point approximations.  It consists of libraries
+that can be called from within a C program and of executable command
+line applications.")
+   (license license:gpl2+)
+   (home-page "http://cm.multiprecision.org/")))
+
 (define-public fplll
   (package
    (name "fplll")
@@ -78,7 +109,7 @@ multiplication routines such as Toom–Cook and the FFT.")
    (description
     "fplll LLL-reduces euclidean lattices.  Since version 3, it can also
 solve the shortest vector problem.")
-   (license lgpl2.1+)
+   (license license:lgpl2.1+)
    (home-page "http://perso.ens-lyon.fr/damien.stehle/fplll/")))
 
 (define-public pari-gp
@@ -95,6 +126,7 @@ solve the shortest vector problem.")
                 "0k1qqagfl6zn7gvwmsqffj6g9yrzqvszwh2mblhmxpjlw1pigfh8"))))
    (build-system gnu-build-system)
    (inputs `(("gmp" ,gmp)
+             ("libx11" ,libx11)
              ("perl" ,perl)
              ("readline" ,readline)))
    (arguments
@@ -119,20 +151,21 @@ functions to compute with mathematical entities such as matrices,
 polynomials, power series, algebraic numbers, etc., and a lot of
 transcendental functions.
 PARI is also available as a C library to allow for faster computations.")
-   (license gpl2+)
+   (license license:gpl2+)
    (home-page "http://pari.math.u-bordeaux.fr/")))
 
 (define-public gp2c
   (package
    (name "gp2c")
-   (version "0.0.9pl2")
+   (version "0.0.9pl3")
    (source (origin
             (method url-fetch)
             (uri (string-append
                   "http://pari.math.u-bordeaux.fr/pub/pari/GP2C/gp2c-"
                   version ".tar.gz"))
-            (sha256 (base32
-                     "02h35fwz1caicii7fj8zb9ky4hcrd8rqmzkyvhbls0r05yg5bwwb"))))
+            (sha256
+              (base32
+                "0wbghihwlcx3w4j1la3bjf5gcrkk6lp9syw6iimqndq1f73ijlq3"))))
    (build-system gnu-build-system)
    (native-inputs `(("perl" ,perl)))
    (inputs `(("pari-gp" ,pari-gp)))
@@ -152,45 +185,41 @@ transcendental functions.
 PARI is also available as a C library to allow for faster computations.
 
 GP2C, the GP to C compiler, translates GP scripts to PARI programs.")
-   (license gpl2)
+   (license license:gpl2)
    (home-page "http://pari.math.u-bordeaux.fr/")))
 
 (define-public flint
   (package
    (name "flint")
-   (version "2.4.5")
+   (version "2.5.2")
    (source (origin
             (method url-fetch)
             (uri (string-append
                   "http://flintlib.org/flint-"
                   version ".tar.gz"))
             (sha256 (base32
-                     "1qq11sxliy499a9g656dgk47ffb951q4gl6ddjbq838gy16kb2g4"))))
+                     "11syazv1a8rrnac3wj3hnyhhflpqcmq02q8pqk2m6g2k6h0gxwfb"))
+            (patches (map search-patch '("flint-ldconfig.patch")))))
    (build-system gnu-build-system)
    (propagated-inputs
     `(("gmp" ,gmp)
       ("mpfr" ,mpfr))) ; header files from both are included by flint/arith.h
    (arguments
-    `(#:phases
-        (alist-replace
-         'configure
-         (lambda* (#:key inputs outputs #:allow-other-keys)
-           (let ((out (assoc-ref outputs "out"))
-                 (gmp (assoc-ref inputs "gmp"))
-                 (mpfr (assoc-ref inputs "mpfr")))
-             ;; Drop test failing with gmp-6 due to changed invertibility
-             ;; of 0 in Z/1 Z, which according to the flint authors has no
-             ;; impact on flint.
-             ;; FIXME: Drop with later version.
-             (delete-file "fmpz/test/t-invmod.c")
-             ;; do not pass "--enable-fast-install", which makes the
-             ;; homebrew configure process fail
-             (zero? (system*
-                     "./configure"
-                     (string-append "--prefix=" out)
-                     (string-append "--with-gmp=" gmp)
-                     (string-append "--with-mpfr=" mpfr)))))
-         %standard-phases)))
+    `(#:parallel-tests? #f ; seems to be necessary on arm
+      #:phases
+       (modify-phases %standard-phases
+         (replace 'configure
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let ((out (assoc-ref outputs "out"))
+                   (gmp (assoc-ref inputs "gmp"))
+                   (mpfr (assoc-ref inputs "mpfr")))
+               ;; do not pass "--enable-fast-install", which makes the
+               ;; homebrew configure process fail
+               (zero? (system*
+                       "./configure"
+                       (string-append "--prefix=" out)
+                       (string-append "--with-gmp=" gmp)
+                       (string-append "--with-mpfr=" mpfr)))))))))
    (synopsis "Fast library for number theory")
    (description
     "FLINT is a C library for number theory.  It supports arithmetic
@@ -203,21 +232,22 @@ Operations that can be performed include conversions, arithmetic,
 GCDs, factoring, solving linear systems, and evaluating special
 functions.  In addition, FLINT provides various low-level routines for
 fast arithmetic.")
-   (license gpl2+)
+   (license license:gpl2+)
    (home-page "http://flintlib.org/")))
 
 (define-public arb
   (package
    (name "arb")
-   (version "2.3.0")
+   (version "2.7.0")
    (source (origin
             (method url-fetch)
             (uri (string-append
                   "https://github.com/fredrik-johansson/arb/archive/"
                   version ".tar.gz"))
             (file-name (string-append name "-" version ".tar.gz"))
-            (sha256 (base32
-                     "0yvabxyyj1g0d8b5mfgzrxq6qya8cmq97vz60ss6aajzm3nwrabk"))))
+            (sha256
+              (base32
+                "1rwkffs57v8mry63rq8l2dyw69zfs9rg5fpbfllqp3nkjnkp1fly"))))
    (build-system gnu-build-system)
    (propagated-inputs
     `(("flint" ,flint))) ; flint.h is included by arf.h
@@ -248,7 +278,7 @@ fast arithmetic.")
 arithmetic.  It supports efficient high-precision computation with
 polynomials, power series, matrices and special functions over the
 real and complex numbers, with automatic, rigorous error control.")
-   (license gpl2+)
+   (license license:gpl2+)
    (home-page "http://fredrikj.net/arb/")))
 
 (define-public bc
@@ -289,7 +319,7 @@ real and complex numbers, with automatic, rigorous error control.")
 an interactive environment for evaluating mathematical statements.  Its
 syntax is similar to that of C, so basic usage is familiar.  It also includes
 \"dc\", a reverse-polish calculator.")
-    (license gpl2+)))
+    (license license:gpl2+)))
 
 (define-public fftw
   (package
@@ -323,7 +353,7 @@ syntax is similar to that of C, so basic usage is familiar.  It also includes
 transform (DFT) in one or more dimensions, of arbitrary input size, and of
 both real and complex data (as well as of even/odd data---i.e. the discrete
 cosine/ sine transforms or DCT/DST).")
-    (license gpl2+)))
+    (license license:gpl2+)))
 
 (define-public fftwf
   (package (inherit fftw)
@@ -353,14 +383,14 @@ cosine/ sine transforms or DCT/DST).")
 (define-public eigen
   (package
     (name "eigen")
-    (version "3.2.5")
+    (version "3.2.6")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://bitbucket.org/eigen/eigen/get/"
                                   version ".tar.bz2"))
               (sha256
                (base32
-                "1yf27mfq1x38wlsghkvpjgs8xd5rvbbikf1wyj2l3qw8h6w6qvjz"))
+                "0gil5ksmgcg6v3nw0v613mvpzz4n33xhawqs8l7fj7rnlpwm4cwa"))
               (modules '((guix build utils)))
               (snippet
                ;; There are 3 test failures in the "unsupported" directory,
@@ -402,4 +432,4 @@ features, and more.")
 
     ;; Most of the code is MPLv2, with a few files under LGPLv2.1+ or BSD-3.
     ;; See 'COPYING.README' for details.
-    (license mpl2.0)))
+    (license license:mpl2.0)))

gnu/packages/audacity.scm

@@ -55,7 +55,7 @@
      `(("wxwidgets" ,wxwidgets-2)
        ("gtk" ,gtk+-2)
        ("alsa-lib" ,alsa-lib)
-       ("jack" ,jack-2)
+       ("jack" ,jack-1)
        ("expat" ,expat)
        ("ffmpeg" ,ffmpeg)
        ("lame" ,lame)

gnu/packages/audio.scm

@@ -3,6 +3,7 @@
 ;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
 ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2015 Alex Kost <alezost@gmail.com>
+;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -59,6 +60,7 @@
   #:use-module (gnu packages readline)
   #:use-module (gnu packages xiph)
   #:use-module (gnu packages xml)
+  #:use-module (gnu packages xorg)
   #:use-module (gnu packages zip)
   #:use-module (srfi srfi-1))
 
@@ -150,13 +152,11 @@ streams from live audio.")
                          libdir "/vamp" "\"]"))))
      #t))
 
-(define-public ardour-3
+(define-public ardour
   (package
     (name "ardour")
-    (version "3.5.403")
+    (version "4.2")
     (source (origin
-              ;; The project only provides tarballs upon individual request
-              ;; (or after payment) so we take the code from git.
               (method git-fetch)
               (uri (git-reference
                     (url "git://git.ardour.org/ardour/ardour.git")
@@ -169,14 +169,15 @@ streams from live audio.")
                     "libs/ardour/revision.cc"
                   (lambda (port)
                     (format port "#include \"ardour/revision.h\"
-namespace ARDOUR { const char* revision = \"3.5-403-gec2cb31\" ; }"))))
+namespace ARDOUR { const char* revision = \"4.2\" ; }"))))
               (sha256
                (base32
-                "01b0wxh0wlxjfz5j8gcwwqhxc6q2kn4njz2fcmzv9fr3xaya5dbp"))
+                "1j8zw0bvh16qwyy8qrqynpak9nghl9j3qhjjcdl7wh9raafjqc00"))
               (file-name (string-append name "-" version))))
     (build-system waf-build-system)
     (arguments
-     `(#:phases
+     `(#:configure-flags '("--cxx11") ; required by gtkmm
+       #:phases
        (modify-phases %standard-phases
          (add-after
           'unpack 'set-rpath-in-LDFLAGS
@@ -228,36 +229,6 @@ record, edit, mix and master audio and MIDI projects.  It is targeted at audio
 engineers, musicians, soundtrack editors and composers.")
     (license license:gpl2+)))
 
-(define-public ardour
-  (package (inherit ardour-3)
-    (name "ardour")
-    ;; We pick the commit after 4.1 because it fixes a build problem.
-    (version "4.1-5aa834e")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "git://git.ardour.org/ardour/ardour.git")
-                    (commit (cadr (string-split version #\-)))))
-              (snippet
-               ;; Ardour expects this file to exist at build time.  It can be
-               ;; created from a git checkout with:
-               ;;   ./waf create_stored_revision
-               '(call-with-output-file
-                    "libs/ardour/revision.cc"
-                  (lambda (port)
-                    (format port "#include \"ardour/revision.h\"
-namespace ARDOUR { const char* revision = \"4.1\" ; }"))))
-              (sha256
-               (base32
-                "0pfmxlscnwyqmgc89cdwrsk1769lr89dirfnpjbxj9zgcns6zqgb"))
-              (file-name (string-append name "-" version))))
-    (arguments
-     (substitute-keyword-arguments (package-arguments ardour-3)
-       ((#:phases phases)
-        `(modify-phases ,phases
-           (replace 'set-rpath-in-LDFLAGS
-                    ,(ardour-rpath-phase (version-prefix version 1)))))))))
-
 (define-public azr3
   (package
     (name "azr3")
@@ -339,7 +310,7 @@ tools (analyzer, mono/stereo tools, crossovers).")
 (define-public csound
   (package
     (name "csound")
-    (version "6.04")
+    (version "6.05")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -347,8 +318,14 @@ tools (analyzer, mono/stereo tools, crossovers).")
                     version "/Csound" version ".tar.gz"))
               (sha256
                (base32
-                "1030w38lxdwjz1irr32m9cl0paqmgr02lab2m7f7j1yihwxj1w0g"))))
+                "0a1sni6lr7qpwywpggbkp0ia3h9bwwgf9i87gsag8ra2h30v82hd"))))
     (build-system cmake-build-system)
+    (arguments
+     ;; Work around this error on x86_64 with libc 2.22+:
+     ;;    libmvec.so.1: error adding symbols: DSO missing from command line
+     (if (string-prefix? "x86_64" (or (%current-target-system) (%current-system)))
+         '(#:configure-flags '("-DCMAKE_EXE_LINKER_FLAGS=-lmvec"))
+         '()))
     (inputs
      `(("alsa-lib" ,alsa-lib)
        ("boost" ,boost)
@@ -557,7 +534,7 @@ patches that can be used with softsynths such as Timidity and WildMidi.")
 (define-public guitarix
   (package
     (name "guitarix")
-    (version "0.32.3")
+    (version "0.33.0")
     (source (origin
              (method url-fetch)
              (uri (string-append
@@ -565,18 +542,17 @@ patches that can be used with softsynths such as Timidity and WildMidi.")
                    version ".tar.bz2"))
              (sha256
               (base32
-               "1ybc5jk7fj6n8qh9ajzl1f6fzdmzab4nwjrh4fsylm94dn1jv0if"))))
+               "1w6dg2n0alfjsx1iy6s53783invygwxk11p1i65cc3nq3zlidcgx"))
+             (patches (list (search-patch "guitarix-c++11.patch")))))
     (build-system waf-build-system)
     (arguments
      `(#:tests? #f ; no "check" target
        #:python ,python-2
        #:configure-flags
        (list
-        ;; FIXME: dsp2cc fails for src/faust/tonestack_engl.dsp, so we use the
-        ;; generated C++ files rather than compiling them from Faust sources.
-        "--no-faust"
         ;; Add the output lib directory to the RUNPATH.
-        (string-append "--ldflags=-Wl,-rpath=" %output "/lib"))))
+        (string-append "--ldflags=-Wl,-rpath=" %output "/lib")
+        "--cxxflags=-std=c++11")))
     (inputs
      `(("libsndfile" ,libsndfile)
        ("boost" ,boost)
@@ -594,7 +570,7 @@ patches that can be used with softsynths such as Timidity and WildMidi.")
        ("zita-convolver" ,zita-convolver)))
     (native-inputs
      `(("gperf" ,gperf)
-       ;;("faust" ,faust) ; dsp2cc fails for src/faust/tonestack_engl.dsp
+       ("faust" ,faust)
        ("intltool" ,intltool)
        ("gettext" ,gnu-gettext)
        ("pkg-config" ,pkg-config)))
@@ -669,11 +645,12 @@ especially for creating reverb effects.  It supports impulse responses with 1,
     (build-system gnu-build-system)
     (inputs
      `(("alsa-lib" ,alsa-lib)
-       ("bdb" ,bdb)
        ("readline" ,readline)))
     ;; uuid.h is included in the JACK type headers
+    ;; db.h is included in the libjack metadata headers
     (propagated-inputs
-     `(("libuuid" ,util-linux)))
+     `(("libuuid" ,util-linux)
+       ("bdb" ,bdb)))
     (native-inputs
      `(("pkg-config" ,pkg-config)))
     (home-page "http://jackaudio.org/")
@@ -689,6 +666,9 @@ synchronous execution of all clients, and low latency operation.")
     ;; licensed under the LGPL in order to allow for proprietary usage.
     (license (list license:gpl2+ license:lgpl2.1+))))
 
+;; Packages depending on JACK should always prefer jack-1.  Both jack-1 and
+;; jack-2 implement the same API.  JACK2 is provided primarily as a client
+;; program for users who might benefit from the D-BUS features.
 (define-public jack-2
   (package (inherit jack-1)
     (name "jack2")
@@ -743,7 +723,16 @@ synchronous execution of all clients, and low latency operation.")
                (base32
                 "1f1hcq74n3ziw8bk97mn5a1vgw028dxikv3fchaxd430pbbhqgl9"))))
     (build-system waf-build-system)
-    (arguments `(#:tests? #f)) ; no check target
+    (arguments
+     `(#:tests? #f ; no check target
+       #:phases
+       (modify-phases %standard-phases
+         (add-before
+          'configure 'set-flags
+          (lambda _
+            ;; Compile with C++11, required by gtkmm.
+            (setenv "CXXFLAGS" "-std=c++11")
+            #t)))))
     (inputs
      `(("lv2" ,lv2)
        ("lilv" ,lilv)
@@ -1051,7 +1040,25 @@ lv2-c++-tools.")
                 "0mmhdqiyb3c9dzvxspm8h2v8jibhi8pfjxnf6m0wn744y1ia2a8f"))))
     (build-system cmake-build-system)
     (arguments
-     `(#:tests? #f)) ; no check target
+     `(#:tests? #f  ; no check target
+       #:phases
+       (modify-phases %standard-phases
+         (add-after
+          'unpack 'use-full-library-paths
+          (lambda* (#:key inputs #:allow-other-keys)
+            (substitute* "Alc/backends/pulseaudio.c"
+              (("#define PALIB \"libpulse\\.so\\.0\"")
+               (string-append "#define PALIB \""
+                              (assoc-ref inputs "pulseaudio")
+                              "/lib/libpulse.so.0"
+                              "\"")))
+            (substitute* "Alc/backends/alsa.c"
+              (("LoadLib\\(\"libasound\\.so\\.2\"\\)")
+               (string-append "LoadLib(\""
+                              (assoc-ref inputs "alsa-lib")
+                              "/lib/libasound.so.2"
+                              "\")")))
+            #t)))))
     (inputs
      `(("alsa-lib" ,alsa-lib)
        ("pulseaudio" ,pulseaudio)))
@@ -1327,11 +1334,11 @@ disks as various audio file formats.")
               (method url-fetch)
               (uri (string-append
                     "https://code.soundsoftware.ac.uk"
-                    "/attachments/download/1514/vamp-plugin-sdk-"
+                    "/attachments/download/1520/vamp-plugin-sdk-"
                     version ".tar.gz"))
               (sha256
                (base32
-                "1s986w0mfh1m0870qd7i50hdzayls8kc3shfqf9651jzwdk34lxa"))))
+                "0pzq0yy2kdl3jgfc2aqmh5m55nk1ild0hq8mydiiw35c6y0mglyh"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f                      ; no check target
@@ -1374,17 +1381,23 @@ analysis plugins or audio feature extraction plugins.")
     (build-system gnu-build-system)
     (native-inputs `(("automake" ,automake)))
     (arguments
-     `(#:phases
-       (alist-cons-after
-        'unpack 'fix-ar-lib-path
-        (lambda* (#:key inputs #:allow-other-keys)
-          ;; Originally a symlink to '/usr/local/share/automake-1.12/ar-lib'.
-          (delete-file "ar-lib")
-          (symlink
-           (string-append (assoc-ref inputs "automake") "/share/automake-"
-                          ,(package-version automake) "/ar-lib")
-           "ar-lib"))
-        %standard-phases)))
+     `(#:configure-flags
+       ;; Disable the use of SSE unless on x86_64.
+       ,(if (not (string-prefix? "x86_64" (or (%current-target-system)
+                                              (%current-system))))
+            ''("--disable-sse")
+            ''())
+       #:phases
+       (modify-phases %standard-phases
+         (add-after
+          'unpack 'fix-ar-lib-path
+          (lambda* (#:key inputs #:allow-other-keys)
+            ;; Originally a symlink to '/usr/local/share/automake-1.12/ar-lib'.
+            (delete-file "ar-lib")
+            (symlink
+             (string-append (assoc-ref inputs "automake") "/share/automake-"
+                            ,(package-version automake) "/ar-lib")
+             "ar-lib"))))))
     (home-page "http://sbsms.sourceforge.net/")
     (synopsis "Library for time stretching and pitch scaling of audio")
     (description
@@ -1625,7 +1638,7 @@ portions of LAME.")
     (inputs
      ;; TODO: Add ASIHPI.
      `(("alsa-lib" ,alsa-lib)
-       ("jack" ,jack-2)))
+       ("jack" ,jack-1)))
     (native-inputs
      `(("autoconf" ,autoconf)
        ("automake" ,automake)
@@ -1652,14 +1665,14 @@ interface.")
 (define-public qsynth
   (package
     (name "qsynth")
-    (version "0.3.9")
+    (version "0.4.0")
     (source
      (origin
        (method url-fetch)
        (uri (string-append
              "mirror://sourceforge/qsynth/qsynth-" version ".tar.gz"))
        (sha256
-        (base32 "08kyn6cl755l9i1grzjx8yi3f8mgiz4gx0hgqad1n0d8yz85087b"))))
+        (base32 "1chc89v9hcjw3k4rvzakl8g56wv24kh48fzv1gfs4iv8vhyl3j4x"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f)) ; no "check" phase
@@ -1682,12 +1695,13 @@ synthesizer written in C++.")
        (method url-fetch)
        (uri (string-append "https://github.com/Themaister/RSound/archive/v"
                            version ".tar.gz"))
+       (file-name (string-append name "-" version))
        (sha256
         (base32 "1wzs40c0k5zpkmm5ffl6c17xmr399sxli7ys0fbb9ib0fd334knx"))))
     (build-system gnu-build-system)
     (inputs
      `(("alsa-lib" ,alsa-lib)
-       ("jack" ,jack-2)
+       ("jack" ,jack-1)
        ("ao" ,ao)
        ("libsamplerate" ,libsamplerate)
        ("openal" ,openal)
@@ -1713,6 +1727,39 @@ directly to a different computer on your LAN network.  It is an audio daemon
 with a much different focus than most other audio daemons.")
     (license license:gpl3+)))
 
+(define-public xjackfreak
+  (package
+    (name "xjackfreak")
+    (version "1.0")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://github.com/johnhldavis/xjackfreak/archive/v"
+                    version ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "0xj6gpxfnw9jbdgwgm0x23xgfvj2kwmwb1nk0drw8lxgcchkq7d9"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:make-flags
+       (list (string-append "docdir=" (assoc-ref %outputs "out")
+                            "/share/doc/xjackfreak"))))
+    (inputs
+     `(("jack" ,jack-1)
+       ("libx11" ,libx11)
+       ("libxt" ,libxt)
+       ("libxext" ,libxext)))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (home-page "https://github.com/johnhldavis/xjackfreak")
+    (synopsis "JACK audio frequency analyzer and display")
+    (description
+     "XJackFreak is an audio analysis and equalizing tool for the Jack Audio
+Connection Kit.  It can display the FFT of any input, modify it and output the
+result.")
+    (license license:gpl3+)))
+
 (define-public zita-convolver
   (package
     (name "zita-convolver")

gnu/packages/autogen.scm

@@ -30,16 +30,16 @@
 (define-public autogen
   (package
     (name "autogen")
-    (version "5.18.5")
+    (version "5.18.6")
     (source
      (origin
       (method url-fetch)
       (uri (string-append "mirror://gnu/autogen/rel"
                           version "/autogen-"
-                          version ".tar.gz"))
+                          version ".tar.xz"))
       (sha256
        (base32
-        "1flnbnmkbqmbfgammkl8m36wrlk6rhpgnf9pdm6gdfhqalxvggbv"))))
+        "0sfmmy19k9z0j3f738fyk6ljf6b66410cvd5zzyplxi2683j10qs"))))
     (build-system gnu-build-system)
     (native-inputs `(("perl" ,perl)     ;for doc generator mdoc
                      ("pkg-config" ,pkg-config)))

gnu/packages/autotools.scm

@@ -1,6 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2012 Nikita Karetnikov <nikita@karetnikov.org>
 ;;; Copyright © 2012, 2013, 2014, 2015 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2015 Mathieu Lirzin <mthl@openmailbox.org>
 ;;; Copyright © 2014 Manolis Fragkiskos Ragkousis <manolis837@gmail.com>
 ;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
 ;;;
@@ -158,6 +159,30 @@ exec ~a --no-auto-compile \"$0\" \"$@\"
                 port)))
            (chmod (string-append bin "/autoconf") #o555)))))))
 
+(define-public autobuild
+  (package
+    (name "autobuild")
+    (version "5.3")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://savannah/autobuild/autobuild-"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "0gv7g61ja9q9zg1m30k4snqwwy1kq7b4df6sb7d2qra7kbdq8af1"))))
+    (build-system gnu-build-system)
+    (inputs `(("perl" ,perl)))
+    (synopsis "Process generated build logs")
+    (description "Autobuild is a package that processes build logs generated
+when building software.  Autobuild is primarily focused on packages using
+Autoconf and Automake, but can be used with other build systems too.
+Autobuild generates an HTML summary file, containing links to each build log.
+The summary includes project name, version, build hostname, host type (cross
+compile aware), date of build, and indication of success or failure.  The
+output is indexed in many ways to simplify browsing.")
+    (home-page "http://josefsson.org/autobuild/")
+    (license gpl3+)))
+
 (define-public automake
   (package
     (name "automake")

gnu/packages/avahi.scm

@@ -23,7 +23,7 @@
   #:use-module (guix download)
   #:use-module (guix build-system gnu)
   #:use-module (gnu packages)
-  #:use-module (gnu packages gdbm)
+  #:use-module (gnu packages databases)
   #:use-module (gnu packages libdaemon)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages glib)
@@ -52,7 +52,8 @@
                            "--disable-xmltoman"
                            "--enable-tests"
                            "--disable-qt3" "--disable-qt4"
-                           "--disable-gtk" "--disable-gtk3")))
+                           "--disable-gtk" "--disable-gtk3"
+                           "--enable-compat-libdns_sd")))
     (inputs
      `(("expat" ,expat)
        ("glib" ,glib)

gnu/packages/backup.scm

@@ -1,6 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2014, 2015 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2014 Ian Denhardt <ian@zenhack.net>
+;;; Copyright © 2015 Leo Famulari <leo@famulari.name>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -26,20 +27,24 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system python)
   #:use-module (gnu packages)
+  #:use-module (gnu packages acl)
   #:use-module (gnu packages base)
   #:use-module (gnu packages compression)
+  #:use-module (gnu packages databases)
   #:use-module (gnu packages dejagnu)
   #:use-module (gnu packages glib)
   #:use-module (gnu packages gnupg)
+  #:use-module (gnu packages gperf)
+  #:use-module (gnu packages guile)
   #:use-module (gnu packages linux)
   #:use-module (gnu packages mcrypt)
   #:use-module (gnu packages nettle)
   #:use-module (gnu packages pcre)
-  #:use-module (gnu packages python)
-  #:use-module (gnu packages linux)
   #:use-module (gnu packages pkg-config)
+  #:use-module (gnu packages python)
   #:use-module (gnu packages rsync)
   #:use-module (gnu packages ssh)
+  #:use-module (gnu packages tls)
   #:use-module (gnu packages xml))
 
 (define-public duplicity
@@ -122,7 +127,7 @@ spying and/or modification by the server.")
     (home-page "http://archive.miek.nl/projects/hdup/index.html")
     (synopsis "Simple incremental backup tool")
     (description
-     "Hdup2 is a backup utilty, its aim is to make backup really simple.  The
+     "Hdup2 is a backup utility, its aim is to make backup really simple.  The
 backup scheduling is done by means of a cron job.  It supports an
 include/exclude mechanism, remote backups, encrypted backups and split
 backups (called chunks) to allow easy burning to CD/DVD.")
@@ -145,6 +150,7 @@ backups (called chunks) to allow easy burning to CD/DVD.")
               (search-patch "libarchive-fix-lzo-test-case.patch")
               (search-patch "libarchive-CVE-2013-0211.patch")))))
     (build-system gnu-build-system)
+    ;; TODO: Add -L/path/to/nettle in libarchive.pc.
     (inputs
      `(("zlib" ,zlib)
        ("nettle" ,nettle)
@@ -316,3 +322,78 @@ rsync.  Thus you can use rdiff-backup and ssh to securely back a hard drive up
 to a remote location, and only the differences will be transmitted.  Finally,
 rdiff-backup is easy to use and settings have sensible defaults.")
     (license license:gpl2+)))
+
+(define-public attic
+  (package
+    (name "attic")
+    (version "0.16")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://pypi.python.org/packages/source/A/Attic/Attic-"
+                    version ".tar.gz"))
+              (sha256
+               (base32
+                "0b5skd36r4c0915lwpkqg5hxm49gls9pprs1b7hc40910wlcsl36"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before
+          'build 'set-openssl-prefix
+          (lambda* (#:key inputs #:allow-other-keys)
+            (setenv "ATTIC_OPENSSL_PREFIX" (assoc-ref inputs "openssl"))
+            #t)))))
+    (inputs
+     `(("acl" ,acl)
+       ("openssl" ,openssl)
+       ("python-llfuse" ,python-llfuse)
+       ("python-msgpack" ,python-msgpack)))
+    (synopsis "Deduplicating backup program")
+    (description "Attic is a deduplicating backup program.  The main goal of
+Attic is to provide an efficient and secure way to backup data.  The data
+deduplication technique used makes Attic suitable for daily backups since only
+changes are stored.")
+    (home-page "https://attic-backup.org/")
+    (license license:bsd-3)))
+
+(define-public libchop
+  (package
+    (name "libchop")
+    (version "0.5.2")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://savannah/libchop/libchop-"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "0fpdyxww41ba52d98blvnf543xvirq1v9xz1i3x1gm9lzlzpmc2g"))
+              (patches
+               (list (search-patch "diffutils-gets-undeclared.patch")))))
+    (build-system gnu-build-system)
+    (native-inputs
+     `(("guile" ,guile-2.0)
+       ("gperf" ,gperf)
+       ("pkg-config" ,pkg-config)))
+    (inputs
+     `(("guile" ,guile-2.0)
+       ("util-linux" ,util-linux)
+       ("gnutls" ,gnutls)
+       ("tdb" ,tdb)
+       ("bdb" ,bdb)
+       ("gdbm" ,gdbm)
+       ("libgcrypt" ,libgcrypt)
+       ("lzo" ,lzo)
+       ("bzip2" ,bzip2)
+       ("zlib" ,zlib)))
+    (home-page "http://nongnu.org/libchop/")
+    (synopsis "Tools & library for data backup and distributed storage")
+    (description
+     "Libchop is a set of utilities and library for data backup and
+distributed storage.  Its main application is @command{chop-backup}, an
+encrypted backup program that supports data integrity checks, versioning,
+distribution among several sites, selective sharing of stored data, adaptive
+compression, and more.  The library itself implements storage techniques such
+as content-addressable storage, content hash keys, Merkle trees, similarity
+detection, and lossless compression.")
+    (license license:gpl3+)))

gnu/packages/base.scm

@@ -4,6 +4,7 @@
 ;;; Copyright © 2012 Nikita Karetnikov <nikita@karetnikov.org>
 ;;; Copyright © 2014, 2015 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2014 Alex Kost <alezost@gmail.com>
+;;; Copyright © 2014, 2015 Manolis Fragkiskos Ragkousis <manolis837@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -33,11 +34,13 @@
   #:use-module (gnu packages perl)
   #:use-module (gnu packages linux)
   #:use-module (gnu packages texinfo)
+  #:use-module (gnu packages hurd)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages gettext)
   #:use-module (guix utils)
   #:use-module (guix packages)
   #:use-module (guix download)
+  #:use-module (guix git-download)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system trivial))
 
@@ -49,22 +52,23 @@
 
 (define-public hello
   (package
-   (name "hello")
-   (version "2.10")
-   (source (origin
-            (method url-fetch)
-            (uri (string-append "mirror://gnu/hello/hello-" version
-                                ".tar.gz"))
-            (sha256
-             (base32 "0ssi1wpaf7plaswqqjwigppsg5fyh99vdlb9kzl7c9lng89ndq1i"))))
-   (build-system gnu-build-system)
-   (synopsis "Hello, GNU world: An example GNU package")
-   (description
-    "GNU Hello prints the message \"Hello, world!\" and then exits.  It
+    (name "hello")
+    (version "2.10")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://gnu/hello/hello-" version
+                                  ".tar.gz"))
+              (sha256
+               (base32
+                "0ssi1wpaf7plaswqqjwigppsg5fyh99vdlb9kzl7c9lng89ndq1i"))))
+    (build-system gnu-build-system)
+    (synopsis "Hello, GNU world: An example GNU package")
+    (description
+     "GNU Hello prints the message \"Hello, world!\" and then exits.  It
 serves as an example of standard GNU coding practices.  As such, it supports
 command-line arguments, multiple languages, and so on.")
-   (home-page "http://www.gnu.org/software/hello/")
-   (license gpl3+)))
+    (home-page "http://www.gnu.org/software/hello/")
+    (license gpl3+)))
 
 (define-public grep
   (package
@@ -245,10 +249,25 @@ used to apply commands with arbitrarily long arguments.")
                                 version ".tar.xz"))
             (sha256
              (base32
-              "0w11jw3fb5sslf0f72kxy7llxgk1ia3a6bcw0c9kmvxrlj355mx2"))))
+              "0w11jw3fb5sslf0f72kxy7llxgk1ia3a6bcw0c9kmvxrlj355mx2"))
+            (patches
+             (list (origin
+                     (method url-fetch)
+                     (uri "http://git.savannah.gnu.org/cgit/coreutils.git/\
+patch/?id=3ba68f9e64fa2eb8af22d510437a0c6441feb5e0")
+                     (sha256
+                      (base32
+                       "1dnlszhc8lihhg801i9sz896mlrgfsjfcz62636prb27k5hmixqz"))
+                     (file-name "coreutils-tail-inotify-race.patch"))))))
    (build-system gnu-build-system)
    (inputs `(("acl"  ,acl)                        ; TODO: add SELinux
-             ("gmp"  ,gmp)))
+             ("gmp"  ,gmp)                        ;bignums in 'expr', yay!
+
+             ;; Drop the dependency on libcap when cross-compiling since it's
+             ;; not quite cross-compilable.
+             ,@(if (%current-target-system)
+                   '()
+                   `(("libcap" ,libcap)))))  ;capability support is 'ls', etc.
    (native-inputs
     ;; Perl is needed to run tests in native builds, and to run the bundled
     ;; copy of help2man.  However, don't pass it when cross-compiling since
@@ -284,6 +303,14 @@ functionality beyond that which is outlined in the POSIX standard.")
    (license gpl3+)
    (home-page "http://www.gnu.org/software/coreutils/")))
 
+(define-public coreutils-minimal
+  ;; Coreutils without its optional dependencies.
+  (package
+    (inherit coreutils)
+    (name "coreutils-minimal")
+    (outputs '("out"))
+    (inputs '())))
+
 (define-public gnu-make
   (package
    (name "make")
@@ -325,14 +352,14 @@ change.  GNU make offers many powerful extensions over the standard utility.")
 (define-public binutils
   (package
    (name "binutils")
-   (version "2.25")
+   (version "2.25.1")
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://gnu/binutils/binutils-"
                                 version ".tar.bz2"))
             (sha256
              (base32
-              "08r9i26b05zcwb9zxb6zllpfdiiicdfsgbpsjlrjmvx3rxjzrpi2"))
+              "08lzmhidzc16af1zbx34f8cy4z7mzrswpdbhrb8shy3xxpflmcdm"))
             (patches (list (search-patch "binutils-ld-new-dtags.patch")
                            (search-patch "binutils-loongson-workaround.patch")))))
    (build-system gnu-build-system)
@@ -438,14 +465,14 @@ store.")
 (define-public glibc
   (package
    (name "glibc")
-   (version "2.21")
+   (version "2.22")
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://gnu/glibc/glibc-"
                                 version ".tar.xz"))
             (sha256
              (base32
-              "1f135546j34s9bfkydmx2nhh9vwxlx60jldi80zmsnln6wj3dsxf"))
+              "0j49682pm2nh4qbdw35bas82p1pgfnz4d2l7iwfyzvrvj0318wzb"))
             (snippet
              ;; Disable 'ldconfig' and /etc/ld.so.cache.  The latter is
              ;; required on LFS distros to avoid loading the distro's libc.so
@@ -454,7 +481,11 @@ store.")
                 (("use_ldconfig=yes")
                  "use_ldconfig=no")))
             (modules '((guix build utils)))
-            (patches (list (search-patch "glibc-ldd-x86_64.patch")))))
+            (patches (map search-patch
+                          '("glibc-ldd-x86_64.patch"
+                            "glibc-locale-incompatibility.patch"
+                            "glibc-versioned-locpath.patch"
+                            "glibc-o-largefile.patch")))))
    (build-system gnu-build-system)
 
    ;; Glibc's <limits.h> refers to <linux/limit.h>, for instance, so glibc
@@ -471,7 +502,7 @@ store.")
       #:parallel-build? #f
 
       ;; The libraries have an empty RUNPATH, but some, such as the versioned
-      ;; libraries (libdl-2.21.so, etc.) have ld.so marked as NEEDED.  Since
+      ;; libraries (libdl-2.22.so, etc.) have ld.so marked as NEEDED.  Since
       ;; these libraries are always going to be found anyway, just skip
       ;; RUNPATH checks.
       #:validate-runpath? #f
@@ -487,12 +518,16 @@ store.")
             ;; Set the default locale path.  In practice, $LOCPATH may be
             ;; defined to point whatever locales users want.  However, setuid
             ;; binaries don't honor $LOCPATH, so they'll instead look into
-            ;; $libc_cv_localedir; we choose /run/current-system/locale, with
-            ;; the idea that it is going to be populated by the sysadmin.
+            ;; $libc_cv_localedir; we choose /run/current-system/locale/X.Y,
+            ;; with the idea that it is going to be populated by the sysadmin.
+            ;; The "X.Y" sub-directory is because locale data formats are
+            ;; incompatible across libc versions; see
+            ;; <https://lists.gnu.org/archive/html/guix-devel/2015-08/msg00737.html>.
             ;;
             ;; `--localedir' is not honored, so work around it.
             ;; See <http://sourceware.org/ml/libc-alpha/2013-03/msg00093.html>.
-            (string-append "libc_cv_localedir=/run/current-system/locale")
+            (string-append "libc_cv_localedir=/run/current-system/locale/"
+                           ,version)
 
             (string-append "--with-headers="
                            (assoc-ref %build-inputs "linux-headers")
@@ -512,72 +547,65 @@ store.")
             "libc_cv_ssp=no")
 
       #:tests? #f                                 ; XXX
-      #:phases (alist-cons-before
-                'configure 'pre-configure
-                (lambda* (#:key inputs native-inputs outputs
-                          #:allow-other-keys)
-                  (let* ((out  (assoc-ref outputs "out"))
-                         (bin  (string-append out "/bin")))
-                    ;; Use `pwd', not `/bin/pwd'.
-                    (substitute* "configure"
-                      (("/bin/pwd") "pwd"))
+      #:phases (modify-phases %standard-phases
+                 (add-before
+                  'configure 'pre-configure
+                  (lambda* (#:key inputs native-inputs outputs
+                                  #:allow-other-keys)
+                    (let* ((out  (assoc-ref outputs "out"))
+                           (bin  (string-append out "/bin"))
+                           ;; FIXME: Normally we would look it up only in INPUTS
+                           ;; but cross-base uses it as a native input.
+                           (bash (or (assoc-ref inputs "static-bash")
+                                     (assoc-ref native-inputs "static-bash"))))
+                      ;; Use `pwd', not `/bin/pwd'.
+                      (substitute* "configure"
+                        (("/bin/pwd") "pwd"))
 
-                    ;; Install the rpc data base file under `$out/etc/rpc'.
-                    ;; FIXME: Use installFlags = [ "sysconfdir=$(out)/etc" ];
-                    (substitute* "sunrpc/Makefile"
-                      (("^\\$\\(inst_sysconfdir\\)/rpc(.*)$" _ suffix)
-                       (string-append out "/etc/rpc" suffix "\n"))
-                      (("^install-others =.*$")
-                       (string-append "install-others = " out "/etc/rpc\n")))
+                      ;; Install the rpc data base file under `$out/etc/rpc'.
+                      ;; FIXME: Use installFlags = [ "sysconfdir=$(out)/etc" ];
+                      (substitute* "sunrpc/Makefile"
+                        (("^\\$\\(inst_sysconfdir\\)/rpc(.*)$" _ suffix)
+                         (string-append out "/etc/rpc" suffix "\n"))
+                        (("^install-others =.*$")
+                         (string-append "install-others = " out "/etc/rpc\n")))
 
-                    (substitute* "Makeconfig"
-                      ;; According to
-                      ;; <http://www.linuxfromscratch.org/lfs/view/stable/chapter05/glibc.html>,
-                      ;; linking against libgcc_s is not needed with GCC
-                      ;; 4.7.1.
-                      ((" -lgcc_s") ""))
+                      (substitute* "Makeconfig"
+                        ;; According to
+                        ;; <http://www.linuxfromscratch.org/lfs/view/stable/chapter05/glibc.html>,
+                        ;; linking against libgcc_s is not needed with GCC
+                        ;; 4.7.1.
+                        ((" -lgcc_s") ""))
 
-                    ;; Copy a statically-linked Bash in the output, with
-                    ;; no references to other store paths.
-                    ;; FIXME: Normally we would look it up only in INPUTS but
-                    ;; cross-base uses it as a native input.
-                    (mkdir-p bin)
-                    (copy-file (string-append (or (assoc-ref inputs
-                                                             "static-bash")
-                                                  (assoc-ref native-inputs
-                                                             "static-bash"))
-                                              "/bin/bash")
-                               (string-append bin "/bash"))
-                    (remove-store-references (string-append bin "/bash"))
-                    (chmod (string-append bin "/bash") #o555)
+                      ;; Have `system' use that Bash.
+                      (substitute* "sysdeps/posix/system.c"
+                        (("#define[[:blank:]]+SHELL_PATH.*$")
+                         (format #f "#define SHELL_PATH \"~a/bin/bash\"\n"
+                                 bash)))
 
-                    ;; Keep a symlink, for `patch-shebang' resolution.
-                    (with-directory-excursion bin
-                      (symlink "bash" "sh"))
+                      ;; Same for `popen'.
+                      (substitute* "libio/iopopen.c"
+                        (("/bin/sh")
+                         (string-append bash "/bin/bash")))
 
-                    ;; Have `system' use that Bash.
-                    (substitute* "sysdeps/posix/system.c"
-                      (("#define[[:blank:]]+SHELL_PATH.*$")
-                       (format #f "#define SHELL_PATH \"~a/bin/bash\"\n"
-                               out)))
+                      ;; Same for the shell used by the 'exec' functions for
+                      ;; scripts that lack a shebang.
+                      (substitute* (find-files "." "^paths\\.h$")
+                        (("#define[[:blank:]]+_PATH_BSHELL[[:blank:]].*$")
+                         (string-append "#define _PATH_BSHELL \""
+                                        bash "/bin/bash\"\n")))
 
-                    ;; Same for `popen'.
-                    (substitute* "libio/iopopen.c"
-                      (("/bin/sh")
-                       (string-append out "/bin/bash")))
+                      ;; Make sure we don't retain a reference to the
+                      ;; bootstrap Perl.
+                      (substitute* "malloc/mtrace.pl"
+                        (("^#!.*")
+                         ;; The shebang can be omitted, because there's the
+                         ;; "bilingual" eval/exec magic at the top of the file.
+                         "")
+                        (("exec @PERL@")
+                         "exec perl"))))))))
 
-                    ;; Make sure we don't retain a reference to the
-                    ;; bootstrap Perl.
-                    (substitute* "malloc/mtrace.pl"
-                      (("^#!.*")
-                       ;; The shebang can be omitted, because there's the
-                       ;; "bilingual" eval/exec magic at the top of the file.
-                       "")
-                      (("exec @PERL@")
-                       "exec perl"))))
-                %standard-phases)))
-
-   (inputs `(("static-bash" ,(static-package bash-light))))
+   (inputs `(("static-bash" ,static-bash)))
 
    ;; To build the manual, we need Texinfo and Perl.  Gettext is needed to
    ;; install the message catalogs, with 'msgfmt'.
@@ -587,9 +615,11 @@ store.")
 
    (native-search-paths
     ;; Search path for packages that provide locale data.  This is useful
-    ;; primarily in build environments.
+    ;; primarily in build environments.  Use 'GUIX_LOCPATH' rather than
+    ;; 'LOCPATH' to avoid interference with the host system's libc on foreign
+    ;; distros.
     (list (search-path-specification
-           (variable "LOCPATH")
+           (variable "GUIX_LOCPATH")
            (files '("lib/locale")))))
 
    (synopsis "The GNU C Library")
@@ -603,6 +633,21 @@ with the Linux kernel.")
    (license lgpl2.0+)
    (home-page "http://www.gnu.org/software/libc/")))
 
+(define-public glibc-2.21
+  ;; The old libc, which we use mostly to build locale data in the old format
+  ;; (which the new libc can cope with.)
+  (package
+    (inherit glibc)
+    (version "2.21")
+    (source (origin
+              (inherit (package-source glibc))
+              (uri (string-append "mirror://gnu/glibc/glibc-"
+                                  version ".tar.xz"))
+              (sha256
+               (base32
+                "1f135546j34s9bfkydmx2nhh9vwxlx60jldi80zmsnln6wj3dsxf"))
+              (patches (list (search-patch "glibc-ldd-x86_64.patch")))))))
+
 (define-public glibc-locales
   (package
     (inherit glibc)
@@ -625,19 +670,16 @@ the 'share/locale' sub-directory of this package.")
           `(alist-replace
             'build
             (lambda* (#:key outputs #:allow-other-keys)
-              (let ((out (assoc-ref outputs "out")))
-                ;; Delete $out/bin, which contains 'bash'.
-                (delete-file-recursively (string-append out "/bin")))
-
               (zero? (system* "make" "localedata/install-locales"
                               "-j" (number->string (parallel-job-count)))))
             (alist-delete 'install ,phases)))
          ((#:configure-flags flags)
           `(append ,flags
-                   ;; Use $(libdir)/locale as is the case by default.
+                   ;; Use $(libdir)/locale/X.Y as is the case by default.
                    (list (string-append "libc_cv_localedir="
                                         (assoc-ref %outputs "out")
-                                        "/lib/locale")))))))))
+                                        "/lib/locale/"
+                                        ,(package-version glibc))))))))))
 
 (define-public glibc-utf8-locales
   (package
@@ -646,7 +688,7 @@ the 'share/locale' sub-directory of this package.")
     (source #f)
     (build-system trivial-build-system)
     (arguments
-     '(#:modules ((guix build utils))
+     `(#:modules ((guix build utils))
        #:builder (begin
                    (use-modules (srfi srfi-1)
                                 (guix build utils))
@@ -654,18 +696,29 @@ the 'share/locale' sub-directory of this package.")
                    (let* ((libc      (assoc-ref %build-inputs "glibc"))
                           (gzip      (assoc-ref %build-inputs "gzip"))
                           (out       (assoc-ref %outputs "out"))
-                          (localedir (string-append out "/lib/locale")))
+                          (localedir (string-append out "/lib/locale/"
+                                                    ,version)))
                      ;; 'localedef' needs 'gzip'.
                      (setenv "PATH" (string-append libc "/bin:" gzip "/bin"))
 
                      (mkdir-p localedir)
                      (every (lambda (locale)
-                              (zero? (system* "localedef" "--no-archive"
-                                              "--prefix" localedir "-i" locale
-                                              "-f" "UTF-8"
+                              (define file
+                                ;; Use the "normalized codeset" by
+                                ;; default--e.g., "en_US.utf8".
+                                (string-append localedir "/" locale ".utf8"))
+
+                              (and (zero? (system* "localedef" "--no-archive"
+                                                   "--prefix" localedir
+                                                   "-i" locale
+                                                   "-f" "UTF-8" file))
+                                   (begin
+                                     ;; For backward compatibility with Guix
+                                     ;; <= 0.8.3, add "xx_YY.UTF-8".
+                                     (symlink (string-append locale ".utf8")
                                               (string-append localedir "/"
-                                                             locale
-                                                             ".UTF-8"))))
+                                                             locale ".UTF-8"))
+                                     #t)))
 
                             ;; These are the locales commonly used for
                             ;; tests---e.g., in Guile's i18n tests.
@@ -699,6 +752,113 @@ variety of options.  It is an alternative to the shell \"type\" built-in
 command.")
     (license gpl3+))) ; some files are under GPLv2+
 
+(define-public glibc/hurd
+  ;; The Hurd's libc variant.
+  (package (inherit glibc)
+    (name "glibc-hurd")
+    (version "2.18")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "git://git.sv.gnu.org/hurd/glibc")
+                    (commit "cc94b3cfe65523f980359e5f0e93a26196bda1d3")))
+              (sha256
+               (base32
+                "17gsh0kaz0zyvghjmx861mi2p65m9901lngi179x61zm6v2v3xc4"))
+              (file-name (string-append name "-" version))
+              (patches (map search-patch
+                            '("glibc-hurd-extern-inline.patch")))))
+
+    ;; Libc provides <hurd.h>, which includes a bunch of Hurd and Mach headers,
+    ;; so both should be propagated.
+    (propagated-inputs `(("gnumach-headers" ,gnumach-headers)
+                         ("hurd-headers" ,hurd-headers)
+                         ("hurd-minimal" ,hurd-minimal)))
+    (native-inputs
+     `(,@(package-native-inputs glibc)
+       ("patch/libpthread-patch" ,(search-patch "libpthread-glibc-preparation.patch"))
+       ("mig" ,mig)
+       ("perl" ,perl)
+       ("libpthread" ,(origin
+                        (method git-fetch)
+                        (uri (git-reference
+                              (url "git://git.sv.gnu.org/hurd/libpthread")
+                              (commit "0ef7b75c4ba91b6660f0d3d8b51d14d25e3d5bfb")))
+                        (sha256
+                         (base32
+                          "031py18fls15z0wprni33mf762kg6fx8xqijppimhp83yp6ky3l3"))
+                        (file-name "libpthread")))))
+
+    (arguments
+     (substitute-keyword-arguments (package-arguments glibc)
+       ((#:configure-flags original-configure-flags)
+        `(append (list "--host=i686-pc-gnu"
+
+                       ;; nscd fails to build for GNU/Hurd:
+                       ;; <https://lists.gnu.org/archive/html/bug-hurd/2014-07/msg00006.html>.
+                       ;; Disable it.
+                       "--disable-nscd")
+                 (filter (lambda (flag)
+                           (not (or (string-prefix? "--with-headers=" flag)
+                                    (string-prefix? "--enable-kernel=" flag))))
+                         ;; Evaluate 'original-configure-flags' in a
+                         ;; lexical environment that has a dummy
+                         ;; "linux-headers" input, to prevent errors.
+                         (let ((%build-inputs `(("linux-headers" . "@DUMMY@")
+                                                ,@%build-inputs)))
+                           ,original-configure-flags))))
+       ((#:phases phases)
+        `(alist-cons-after
+          'unpack 'prepare-libpthread
+          (lambda* (#:key inputs #:allow-other-keys)
+            (copy-recursively (assoc-ref inputs "libpthread") "libpthread")
+
+            (system* "patch" "--force" "-p1" "-i"
+                     (assoc-ref inputs "patch/libpthread-patch"))
+            #t)
+          ,phases))))
+    (synopsis "The GNU C Library (GNU Hurd variant)")
+    (supported-systems %hurd-systems)))
+
+(define-public glibc/hurd-headers
+  (package (inherit glibc/hurd)
+    (name "glibc-hurd-headers")
+    (outputs '("out"))
+    (propagated-inputs `(("gnumach-headers" ,gnumach-headers)
+                         ("hurd-headers" ,hurd-headers)))
+    (arguments
+     (substitute-keyword-arguments (package-arguments glibc/hurd)
+       ;; We just pass the flags really needed to build the headers.
+       ((#:configure-flags _)
+        `(list "--enable-add-ons"
+               "--host=i686-pc-gnu"
+               "--enable-obsolete-rpc"))
+       ((#:phases _)
+        '(alist-replace
+          'install
+          (lambda* (#:key outputs #:allow-other-keys)
+            (and (zero? (system* "make" "install-headers"))
+
+                 ;; Make an empty stubs.h to work around not being able to
+                 ;; produce a valid stubs.h and causing the build to fail. See
+                 ;; <http://lists.gnu.org/archive/html/guix-devel/2014-04/msg00233.html>.
+                 (let ((out (assoc-ref outputs "out")))
+                   (close-port
+                    (open-output-file
+                     (string-append out "/include/gnu/stubs.h"))))))
+
+          ;; Nothing to build.
+          (alist-delete
+           'build
+
+           (alist-cons-before
+            'configure 'pre-configure
+            (lambda _
+              ;; Use the right 'pwd'.
+              (substitute* "configure"
+                (("/bin/pwd") "pwd")))
+            %standard-phases))))))))
+
 (define-public tzdata
   (package
     (name "tzdata")

gnu/packages/bash.scm

@@ -214,10 +214,10 @@ without modification.")
      (license gpl3+)
      (home-page "http://www.gnu.org/software/bash/"))))
 
-(define-public bash-light
+(define-public bash-minimal
   ;; A stripped-down Bash for non-interactive use.
   (package (inherit bash)
-    (name "bash-light")
+    (name "bash-minimal")
     (inputs '())                                ; no readline, no curses
     (arguments
      (let ((args `(#:modules ((guix build gnu-build-system)
@@ -239,6 +239,28 @@ without modification.")
                        '("bash_cv_job_control_missing=no")
                        '()))))))))
 
+(define-public static-bash
+  ;; Statically-linked Bash that contains nothing but the 'bash' binary and
+  ;; 'sh' symlink, without any reference.
+  (let ((bash (static-package bash-minimal)))
+    (package
+      (inherit bash)
+      (name "bash-static")
+      (arguments
+       (substitute-keyword-arguments
+           `(#:allowed-references ("out") ,@(package-arguments bash))
+         ((#:phases phases)
+          `(alist-cons-after
+            'strip 'remove-everything-but-the-binary
+            (lambda* (#:key outputs #:allow-other-keys)
+              (let* ((out (assoc-ref outputs "out"))
+                     (bin (string-append out "/bin")))
+                (remove-store-references (string-append bin "/bash"))
+                (delete-file (string-append bin "/bashbug"))
+                (delete-file-recursively (string-append out "/share"))
+                #t))
+            ,phases)))))))
+
 (define-public bash-completion
   (package
     (name "bash-completion")

gnu/packages/bioinformatics.scm

@@ -1,6 +1,8 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2014, 2015 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2015 Ben Woodcroft <donttrustben@gmail.com>
+;;; Copyright © 2015 Pjotr Prins <pjotr.guix@thebird.nl>
+;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -27,8 +29,11 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system python)
+  #:use-module (guix build-system r)
+  #:use-module (guix build-system ruby)
   #:use-module (guix build-system trivial)
   #:use-module (gnu packages)
+  #:use-module (gnu packages autotools)
   #:use-module (gnu packages algebra)
   #:use-module (gnu packages base)
   #:use-module (gnu packages boost)
@@ -45,14 +50,16 @@
   #:use-module (gnu packages popt)
   #:use-module (gnu packages protobuf)
   #:use-module (gnu packages python)
+  #:use-module (gnu packages ruby)
   #:use-module (gnu packages statistics)
-  #:use-module (gnu packages swig)
   #:use-module (gnu packages tbb)
   #:use-module (gnu packages textutils)
+  #:use-module (gnu packages tls)
   #:use-module (gnu packages vim)
   #:use-module (gnu packages web)
   #:use-module (gnu packages xml)
-  #:use-module (gnu packages zip))
+  #:use-module (gnu packages zip)
+  #:use-module (srfi srfi-1))
 
 (define-public aragorn
   (package
@@ -196,7 +203,7 @@ computational cluster.")
 (define-public bedtools
   (package
     (name "bedtools")
-    (version "2.22.0")
+    (version "2.24.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/arq5x/bedtools2/archive/v"
@@ -204,7 +211,8 @@ computational cluster.")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "16aq0w3dmbd0853j32xk9jin4vb6v6fgakfyvrsmsjizzbn3fpfl"))))
+                "0lnxrjvs3nnmb4bmskag1wg3h2hd80przz5q3xd0bvs7vyxrvpbl"))
+              (patches (list (search-patch "bedtools-32bit-compilation.patch")))))
     (build-system gnu-build-system)
     (native-inputs `(("python" ,python-2)))
     (inputs `(("samtools" ,samtools)
@@ -227,9 +235,8 @@ computational cluster.")
           'install
           (lambda* (#:key outputs #:allow-other-keys)
             (let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
-              (mkdir-p bin)
               (for-each (lambda (file)
-                          (copy-file file (string-append bin (basename file))))
+                          (install-file file bin))
                         (find-files "bin" ".*"))))
           %standard-phases)))))
     (home-page "https://github.com/arq5x/bedtools2")
@@ -276,6 +283,67 @@ pybedtools extends BEDTools by offering feature-level manipulations from with
 Python.")
     (license license:gpl2+)))
 
+(define-public bioperl-minimal
+  (let* ((inputs `(("perl-module-build" ,perl-module-build)
+                   ("perl-data-stag" ,perl-data-stag)
+                   ("perl-libwww" ,perl-libwww)
+                   ("perl-uri" ,perl-uri)))
+         (transitive-inputs
+          (map (compose package-name cadr)
+               (delete-duplicates
+                (concatenate
+                 (map (compose package-transitive-target-inputs cadr) inputs))))))
+    (package
+      (name "bioperl-minimal")
+      (version "1.6.924")
+      (source
+       (origin
+         (method url-fetch)
+         (uri (string-append "mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-"
+                             version ".tar.gz"))
+         (sha256
+          (base32
+           "1l3npcvvvwjlhkna9dndpfv1hklhrgva013kw96m0n1wpd37ask1"))))
+      (build-system perl-build-system)
+      (arguments
+       `(#:phases
+         (modify-phases %standard-phases
+           (add-after
+            'install 'wrap-programs
+            (lambda* (#:key outputs #:allow-other-keys)
+              ;; Make sure all executables in "bin" find the required Perl
+              ;; modules at runtime.  As the PERL5LIB variable contains also
+              ;; the paths of native inputs, we pick the transitive target
+              ;; inputs from %build-inputs.
+              (let* ((out  (assoc-ref outputs "out"))
+                     (bin  (string-append out "/bin/"))
+                     (path (string-join
+                            (cons (string-append out "/lib/perl5/site_perl")
+                                  (map (lambda (name)
+                                         (assoc-ref %build-inputs name))
+                                       ',transitive-inputs))
+                            ":")))
+                (for-each (lambda (file)
+                            (wrap-program file
+                              `("PERL5LIB" ":" prefix (,path))))
+                          (find-files bin "\\.pl$"))
+                #t))))))
+      (inputs inputs)
+      (native-inputs
+       `(("perl-test-most" ,perl-test-most)))
+      (home-page "http://search.cpan.org/dist/BioPerl")
+      (synopsis "Bioinformatics toolkit")
+      (description
+       "BioPerl is the product of a community effort to produce Perl code which
+is useful in biology.  Examples include Sequence objects, Alignment objects
+and database searching objects.  These objects not only do what they are
+advertised to do in the documentation, but they also interact - Alignment
+objects are made from the Sequence objects, Sequence objects have access to
+Annotation and SeqFeature objects and databases, Blast objects can be
+converted to Alignment objects, and so on.  This means that the objects
+provide a coordinated and extensible framework to do computational biology.")
+      (license (package-license perl)))))
+
 (define-public python-biopython
   (package
     (name "python-biopython")
@@ -492,9 +560,8 @@ confidence to have in an alignment.")
          'install
          (lambda* (#:key outputs #:allow-other-keys)
            (let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
-             (mkdir-p bin)
              (for-each (lambda (file)
-                         (copy-file file (string-append bin file)))
+                         (install-file file bin))
                        (find-files "." "bowtie2.*"))))
          (alist-replace
           'check
@@ -544,12 +611,15 @@ gapped, local, and paired-end alignment modes.")
             (mkdir-p bin)
             (mkdir-p doc)
             (mkdir-p man)
-            (copy-file "bwa" (string-append bin "/bwa"))
-            (copy-file "README.md" (string-append doc "/README.md"))
-            (copy-file "bwa.1" (string-append man "/bwa.1"))))
+            (install-file "bwa" bin)
+            (install-file "README.md" doc)
+            (install-file "bwa.1" man)))
         ;; no "configure" script
         (alist-delete 'configure %standard-phases))))
     (inputs `(("zlib" ,zlib)))
+    ;; Non-portable SSE instructions are used so building fails on platforms
+    ;; other than x86_64.
+    (supported-systems '("x86_64-linux"))
     (home-page "http://bio-bwa.sourceforge.net/")
     (synopsis "Burrows-Wheeler sequence aligner")
     (description
@@ -608,6 +678,7 @@ multiple sequence alignments.")
               (uri (string-append
                     "https://github.com/YeoLab/clipper/archive/"
                     version ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
                 "1q7jpimsqln7ic44i8v2rx2haj5wvik8hc1s2syd31zcn0xk1iyq"))
@@ -734,15 +805,16 @@ time.")
 (define-public crossmap
   (package
     (name "crossmap")
-    (version "0.1.6")
+    (version "0.2.1")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/crossmap/CrossMap-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "163hi5gjgij6cndxlvbkp5jjwr0k4wbm9im6d2210278q7k9kpnp"))
-              ;; patch has been sent upstream already
+                "07y179f63d7qnzdvkqcziwk9bs3k4zhp81q392fp1hwszjdvy22f"))
+              ;; This patch has been sent upstream already and is available
+              ;; for download from Sourceforge, but it has not been merged.
               (patches (list
                         (search-patch "crossmap-allow-system-pysam.patch")))
               (modules '((guix build utils)))
@@ -813,6 +885,45 @@ file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF.")
 other types of unwanted sequence from high-throughput sequencing reads.")
     (license license:expat)))
 
+(define-public deeptools
+  (package
+    (name "deeptools")
+    (version "1.5.11")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://github.com/fidelram/deepTools/archive/"
+                    version ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1kaagygcbvjs9sxd9cqmskd02wcfp9imvb735r087w7hwqpvz6fs"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:python ,python-2))
+    (propagated-inputs
+     `(("python-scipy" ,python2-scipy)
+       ("python-numpy" ,python2-numpy)
+       ("python-matplotlib" ,python2-matplotlib)
+       ("python-bx-python" ,python2-bx-python)
+       ("python-pysam" ,python2-pysam)))
+    (native-inputs
+     `(("python-mock" ,python2-mock) ;for tests
+       ("python-pytz" ,python2-pytz) ;for tests
+       ("python-setuptools" ,python2-setuptools)))
+    (home-page "https://github.com/fidelram/deepTools")
+    (synopsis "Tools for normalizing and visualizing deep-sequencing data")
+    (description
+     "DeepTools addresses the challenge of handling the large amounts of data
+that are now routinely generated from DNA sequencing centers.  To do so,
+deepTools contains useful modules to process the mapped reads data to create
+coverage files in standard bedGraph and bigWig file formats.  By doing so,
+deepTools allows the creation of normalized coverage files or the comparison
+between two files (for example, treatment and control).  Finally, using such
+normalized and standardized files, multiple visualizations can be created to
+identify enrichments with functional annotations of the genome.")
+    (license license:gpl3+)))
+
 (define-public diamond
   (package
     (name "diamond")
@@ -860,6 +971,9 @@ translated DNA query sequences against a protein reference database (BLASTP
 and BLASTX alignment mode).  The speedup over BLAST is up to 20,000 on short
 reads at a typical sensitivity of 90-99% relative to BLAST depending on the
 data and settings.")
+    ;; diamond fails to build on other platforms
+    ;; https://github.com/bbuchfink/diamond/issues/18
+    (supported-systems '("x86_64-linux"))
     (license (license:non-copyleft "file://src/COPYING"
                                    "See src/COPYING in the distribution."))))
 
@@ -976,6 +1090,51 @@ analysis (from RNA-Seq), transcription factor binding quantification in
 ChIP-Seq, and analysis of metagenomic data.")
     (license license:artistic2.0)))
 
+(define-public express-beta-diversity
+  (package
+   (name "express-beta-diversity")
+   (version "1.0.7")
+   (source (origin
+             (method url-fetch)
+             (uri
+              (string-append
+               "https://github.com/dparks1134/ExpressBetaDiversity/archive/v"
+               version ".tar.gz"))
+             (file-name (string-append name "-" version ".tar.gz"))
+             (sha256
+              (base32
+               "1djvdlmqvjf6h0zq7w36y8cl5cli6rgj86x65znl48agnwmzxfxr"))))
+   (build-system gnu-build-system)
+   (arguments
+    `(#:phases
+      (modify-phases %standard-phases
+        (delete 'configure)
+        (add-before 'build 'enter-source (lambda _ (chdir "source") #t))
+        (replace 'check
+                 (lambda _ (zero? (system* "../bin/ExpressBetaDiversity"
+                                           "-u"))))
+        (add-after 'check 'exit-source (lambda _ (chdir "..") #t))
+        (replace 'install
+                 (lambda* (#:key outputs #:allow-other-keys)
+                   (let ((bin (string-append (assoc-ref outputs "out")
+                                             "/bin")))
+                     (mkdir-p bin)
+                     (copy-file "scripts/convertToEBD.py"
+                                (string-append bin "/convertToEBD.py"))
+                     (copy-file "bin/ExpressBetaDiversity"
+                                (string-append bin "/ExpressBetaDiversity"))
+                     #t))))))
+   (inputs
+    `(("python" ,python-2)))
+   (home-page "http://kiwi.cs.dal.ca/Software/ExpressBetaDiversity")
+   (synopsis "Taxon- and phylogenetic-based beta diversity measures")
+   (description
+    "Express Beta Diversity (EBD) calculates ecological beta diversity
+(dissimilarity) measures between biological communities.  EBD implements a
+variety of diversity measures including those that make use of phylogenetic
+similarity of community members.")
+   (license license:gpl3+)))
+
 (define-public fasttree
   (package
    (name "fasttree")
@@ -1202,14 +1361,12 @@ estimates transcript expression.")
         (alist-replace
          'install
          (lambda* (#:key outputs #:allow-other-keys)
-           (let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
-             (mkdir-p bin)
-             (for-each
-              (lambda (file)
-                (copy-file file (string-append bin file)))
-              (find-files
-               "."
-               "hisat(-(build|align|inspect)(-(s|l)(-debug)*)*)*$"))))
+           (let ((bin (string-append (assoc-ref outputs "out") "/bi/")))
+             (for-each (lambda (file)
+                         (install-file file bin))
+                       (find-files
+                        "."
+                        "hisat(-(build|align|inspect)(-(s|l)(-debug)*)*)*$"))))
          (alist-delete 'configure %standard-phases)))))
     (native-inputs
      `(("unzip" ,unzip)))
@@ -1217,6 +1374,9 @@ estimates transcript expression.")
      `(("perl" ,perl)
        ("python" ,python)
        ("zlib" ,zlib)))
+    ;; Non-portable SSE instructions are used so building fails on platforms
+    ;; other than x86_64.
+    (supported-systems '("x86_64-linux"))
     (home-page "http://ccb.jhu.edu/software/hisat/index.shtml")
     (synopsis "Hierarchical indexing for spliced alignment of transcripts")
     (description
@@ -1442,6 +1602,64 @@ resolution of binding sites through combining the information of both
 sequencing tag position and orientation.")
     (license license:bsd-3)))
 
+(define-public mafft
+  (package
+    (name "mafft")
+    (version "7.221")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "http://mafft.cbrc.jp/alignment/software/mafft-" version
+                    "-without-extensions-src.tgz"))
+              (file-name (string-append name "-" version ".tgz"))
+              (sha256
+               (base32
+                "0xi7klbsgi049vsrk6jiwh9wfj3b770gz3c8c7zwij448v0dr73d"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:tests? #f ; no automated tests, though there are tests in the read me
+       #:make-flags (let ((out (assoc-ref %outputs "out")))
+                      (list (string-append "PREFIX=" out)
+                            (string-append "BINDIR="
+                                           (string-append out "/bin"))))
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'enter-dir
+          (lambda _ (chdir "core") #t))
+         (add-after 'enter-dir 'patch-makefile
+          (lambda _
+            ;; on advice from the MAFFT authors, there is no need to
+            ;; distribute mafft-profile, mafft-distance, or
+            ;; mafft-homologs.rb as they are too "specialised".
+            (substitute* "Makefile"
+              ;; remove mafft-homologs.rb from SCRIPTS
+              (("^SCRIPTS = mafft mafft-homologs.rb")
+               "SCRIPTS = mafft")
+              ;; remove mafft-distance from PROGS
+              (("^PROGS = dvtditr dndfast7 dndblast sextet5 mafft-distance")
+               "PROGS = dvtditr dndfast7 dndblast sextet5")
+              ;; remove mafft-profile from PROGS
+              (("splittbfast disttbfast tbfast mafft-profile 2cl mccaskillwrap")
+               "splittbfast disttbfast tbfast f2cl mccaskillwrap")
+              (("^rm -f mafft-profile mafft-profile.exe") "#")
+              (("^rm -f mafft-distance mafft-distance.exe") ")#")
+              ;; do not install MAN pages in libexec folder
+              (("^\t\\$\\(INSTALL\\) -m 644 \\$\\(MANPAGES\\) \
+\\$\\(DESTDIR\\)\\$\\(LIBDIR\\)") "#"))
+            #t))
+         (delete 'configure))))
+    (inputs
+     `(("perl" ,perl)))
+    (home-page "http://mafft.cbrc.jp/alignment/software/")
+    (synopsis "Multiple sequence alignment program")
+    (description
+     "MAFFT offers a range of multiple alignment methods for nucleotide and
+protein sequences.  For instance, it offers L-INS-i (accurate; for alignment
+of <~200 sequences) and FFT-NS-2 (fast; for alignment of <~30,000
+sequences).")
+    (license (license:non-copyleft
+              "http://mafft.cbrc.jp/alignment/software/license.txt"
+              "BSD-3 with different formatting"))))
 
 (define-public metabat
   (package
@@ -1669,19 +1887,25 @@ the phenotype as it models the data.")
     (license license:asl2.0)))
 
 (define-public pbtranscript-tofu
-  (let ((commit "c7bbd5472"))
+  (let ((commit "8f5467fe6"))
     (package
       (name "pbtranscript-tofu")
-      (version (string-append "0.4.1." commit))
+      (version (string-append "2.2.3." commit))
       (source (origin
                 (method git-fetch)
                 (uri (git-reference
                       (url "https://github.com/PacificBiosciences/cDNA_primer.git")
                       (commit commit)))
-                (file-name (string-append name "-" version ".tar.gz"))
+                (file-name (string-append name "-" version "-checkout"))
                 (sha256
                  (base32
-                  "148xkzi689c49g6fdhckp6mnmj2qhjdf1j4wifm6ja7ij95d7fxx"))))
+                  "1lgnpi35ihay42qx0b6yl3kkgra723i413j33kvs0kvs61h82w0f"))
+                (modules '((guix build utils)))
+                (snippet
+                 '(begin
+                    ;; remove bundled Cython sources
+                    (delete-file "pbtranscript-tofu/pbtranscript/Cython-0.20.1.tar.gz")
+                    #t))))
       (build-system python-build-system)
       (arguments
        `(#:python ,python-2
@@ -1691,34 +1915,29 @@ the phenotype as it models the data.")
          #:configure-flags '("--single-version-externally-managed"
                              "--record=pbtranscript-tofu.txt")
          #:phases
-         (alist-cons-after
-          'unpack 'enter-directory-and-clean-up
-          (lambda _
-            (chdir "pbtranscript-tofu/pbtranscript/")
-            ;; Delete clutter
-            (delete-file-recursively "dist/")
-            (delete-file-recursively "build/")
-            (delete-file-recursively "setuptools_cython-0.2.1-py2.6.egg/")
-            (delete-file-recursively "pbtools.pbtranscript.egg-info")
-            (delete-file "Cython-0.20.1.tar.gz")
-            (delete-file "setuptools_cython-0.2.1-py2.7.egg")
-            (delete-file "setuptools_cython-0.2.1.tar.gz")
-            (delete-file "setup.cfg")
-            (for-each delete-file
-                      (find-files "." "\\.so$"))
-            ;; files should be writable for install phase
-            (for-each (lambda (f) (chmod f #o755))
-                      (find-files "." "\\.py$")))
-          %standard-phases)))
+         (modify-phases %standard-phases
+           (add-after 'unpack 'enter-directory
+            (lambda _
+              (chdir "pbtranscript-tofu/pbtranscript/")
+              #t))
+           ;; With setuptools version 18.0 and later this setup.py hack causes
+           ;; a build error, so we disable it.
+           (add-after 'enter-directory 'patch-setuppy
+            (lambda _
+              (substitute* "setup.py"
+                (("if 'setuptools.extension' in sys.modules:")
+                 "if False:"))
+              #t)))))
       (inputs
-       `(("python-cython" ,python2-cython)
-         ("python-numpy" ,python2-numpy)
+       `(("python-numpy" ,python2-numpy)
          ("python-bx-python" ,python2-bx-python)
          ("python-networkx" ,python2-networkx)
          ("python-scipy" ,python2-scipy)
-         ("python-pbcore" ,python2-pbcore)))
+         ("python-pbcore" ,python2-pbcore)
+         ("python-h5py" ,python2-h5py)))
       (native-inputs
-       `(("python-nose" ,python2-nose)
+       `(("python-cython" ,python2-cython)
+         ("python-nose" ,python2-nose)
          ("python-setuptools" ,python2-setuptools)))
       (home-page "https://github.com/PacificBiosciences/cDNA_primer")
       (synopsis "Analyze transcriptome data generated with the Iso-Seq protocol")
@@ -1927,17 +2146,14 @@ distribution, coverage uniformity, strand specificity, etc.")
          'install 'install-library
          (lambda* (#:key outputs #:allow-other-keys)
            (let ((lib (string-append (assoc-ref outputs "out") "/lib")))
-             (mkdir-p lib)
-             (copy-file "libbam.a" (string-append lib "/libbam.a"))))
+             (install-file "libbam.a" lib)))
          (alist-cons-after
           'install 'install-headers
           (lambda* (#:key outputs #:allow-other-keys)
             (let ((include (string-append (assoc-ref outputs "out")
                                           "/include/samtools/")))
-              (mkdir-p include)
               (for-each (lambda (file)
-                          (copy-file file (string-append include
-                                                         (basename file))))
+                          (install-file file include))
                         (scandir "." (lambda (name) (string-match "\\.h$" name))))
               #t))
           (alist-delete 'configure %standard-phases))))))
@@ -1983,6 +2199,52 @@ viewer.")
                                    (string-append bin "/samtools")))))
            (delete 'patch-tests)))))))
 
+(define-public mosaik
+  (let ((commit "5c25216d"))
+    (package
+      (name "mosaik")
+      (version "2.2.30")
+      (source (origin
+                ;; There are no release tarballs nor tags.
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/wanpinglee/MOSAIK.git")
+                      (commit commit)))
+                (file-name (string-append name "-" version))
+                (sha256
+                 (base32
+                  "17gj3s07cm77r41z92awh0bim7w7q7fbn0sf5nkqmcm1vw052qgw"))))
+      (build-system gnu-build-system)
+      (arguments
+       `(#:tests? #f ; no tests
+         #:make-flags (list "CC=gcc")
+         #:phases
+         (modify-phases %standard-phases
+           (replace 'configure
+                    (lambda _ (chdir "src") #t))
+           (replace 'install
+                    (lambda* (#:key outputs #:allow-other-keys)
+                      (let ((bin (string-append (assoc-ref outputs "out")
+                                                "/bin")))
+                        (mkdir-p bin)
+                        (copy-recursively "../bin" bin)
+                        #t))))))
+      (inputs
+       `(("perl" ,perl)
+         ("zlib" ,zlib)))
+      (home-page "https://code.google.com/p/mosaik-aligner/")
+      (synopsis "Map nucleotide sequence reads to reference genomes")
+      (description
+       "MOSAIK is a program for mapping second and third-generation sequencing
+reads to a reference genome.  MOSAIK can align reads generated by all the
+major sequencing technologies, including Illumina, Applied Biosystems SOLiD,
+Roche 454, Ion Torrent and Pacific BioSciences SMRT.")
+      ;; MOSAIK is released under the GPLv2+ with the exception of third-party
+      ;; code released into the public domain:
+      ;; 1. fastlz by Ariya Hidayat - http://www.fastlz.org/
+      ;; 2. MD5 implementation - RSA Data Security, RFC 1321
+      (license (list license:gpl2+ license:public-domain)))))
+
 (define-public ngs-sdk
   (package
     (name "ngs-sdk")
@@ -2016,6 +2278,10 @@ viewer.")
          (lambda _ (chdir "ngs-sdk") #t)
          %standard-phases))))
     (native-inputs `(("perl" ,perl)))
+    ;; According to the test
+    ;;   unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i)
+    ;; in ngs-sdk/setup/konfigure.perl
+    (supported-systems '("i686-linux" "x86_64-linux"))
     (home-page "https://github.com/ncbi/ngs")
     (synopsis "API for accessing Next Generation Sequencing data")
     (description
@@ -2192,8 +2458,7 @@ accessed/downloaded on demand across HTTP.")
                   (lambda* (#:key outputs #:allow-other-keys)
                     (let ((bin (string-append (assoc-ref outputs "out")
                                               "/bin/")))
-                      (mkdir-p bin)
-                      (copy-file "plink" (string-append bin "plink"))
+                      (install-file "plink" bin)
                       #t))))))
     (inputs
      `(("zlib" ,zlib)
@@ -2388,6 +2653,44 @@ manipulation, online and indexed string search, efficient I/O of
 bioinformatics file formats, sequence alignment, and more.")
     (license license:bsd-3)))
 
+(define-public seqmagick
+  (package
+    (name "seqmagick")
+    (version "0.6.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://pypi.python.org/packages/source/s/seqmagick/seqmagick-"
+             version ".tar.gz"))
+       (sha256
+        (base32
+         "0cgn477n74gsl4qdaakrrhi953kcsd4q3ivk2lr18x74s3g4ma1d"))))
+    (build-system python-build-system)
+    (arguments
+     ;; python2 only, see https://github.com/fhcrc/seqmagick/issues/56
+     `(#:python ,python-2
+       #:phases
+       (modify-phases %standard-phases
+         ;; Current test in setup.py does not work as of 0.6.1,
+         ;; so use nose to run tests instead for now. See
+         ;; https://github.com/fhcrc/seqmagick/issues/55
+         (replace 'check (lambda _ (zero? (system* "nosetests")))))))
+    (inputs
+     `(("python-biopython" ,python2-biopython)))
+    (native-inputs
+     `(("python-setuptools" ,python2-setuptools)
+       ("python-nose" ,python2-nose)))
+    (home-page "http://github.com/fhcrc/seqmagick")
+    (synopsis "Tools for converting and modifying sequence files")
+    (description
+     "Bioinformaticians often have to convert sequence files between formats
+and do little manipulations on them, and it's not worth writing scripts for
+that.  Seqmagick is a utility to expose the file format conversion in
+BioPython in a convenient way.  Instead of having a big mess of scripts, there
+is one that takes arguments.")
+    (license license:gpl3)))
+
 (define-public star
   (package
     (name "star")
@@ -2415,8 +2718,7 @@ bioinformatics file formats, sequence alignment, and more.")
          'install
          (lambda* (#:key outputs #:allow-other-keys)
            (let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
-             (mkdir-p bin)
-             (copy-file "STAR" (string-append bin "STAR"))))
+             (install-file "STAR" bin)))
          (alist-delete
           'configure %standard-phases)))))
     (native-inputs
@@ -2451,7 +2753,24 @@ sequences.")
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f ;no "check" target
-       #:make-flags '("-f" "Makefile.Linux")
+      ;; The CC and CCFLAGS variables are set to contain a lot of x86_64
+      ;; optimizations by default, so we override these flags such that x86_64
+      ;; flags are only added when the build target is an x86_64 system.
+       #:make-flags
+       (list (let ((system ,(or (%current-target-system)
+                                (%current-system)))
+                   (flags '("-ggdb" "-fomit-frame-pointer"
+                            "-ffast-math" "-funroll-loops"
+                            "-fmessage-length=0"
+                            "-O9" "-Wall" "-DMAKE_FOR_EXON"
+                            "-DMAKE_STANDALONE"
+                            "-DSUBREAD_VERSION=\\\"${SUBREAD_VERSION}\\\""))
+                   (flags64 '("-mmmx" "-msse" "-msse2" "-msse3")))
+               (if (string-prefix? "x86_64" system)
+                   (string-append "CCFLAGS=" (string-join (append flags flags64)))
+                   (string-append "CCFLAGS=" (string-join flags))))
+             "-f" "Makefile.Linux"
+             "CC=gcc ${CCFLAGS}")
        #:phases
        (alist-cons-after
         'unpack 'enter-dir
@@ -2475,145 +2794,6 @@ features; exactSNP: a SNP caller that discovers SNPs by testing signals
 against local background noises.")
     (license license:gpl3+)))
 
-(define-public shogun
-  (package
-    (name "shogun")
-    (version "4.0.0")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append
-             "ftp://shogun-toolbox.org/shogun/releases/"
-             (version-major+minor version)
-             "/sources/shogun-" version ".tar.bz2"))
-       (sha256
-        (base32
-         "159nlijnb7mnrv9za80wnm1shwvy45hgrqzn51hxy7gw4z6d6fdb"))
-       (modules '((guix build utils)
-                  (ice-9 rdelim)))
-       (snippet
-        '(begin
-           ;; Remove non-free sources and files referencing them
-           (for-each delete-file
-                     (find-files "src/shogun/classifier/svm/"
-                                 "SVMLight\\.(cpp|h)"))
-           (for-each delete-file
-                     (find-files "examples/undocumented/libshogun/"
-                                 (string-append
-                                  "(classifier_.*svmlight.*|"
-                                  "evaluation_cross_validation_locked_comparison).cpp")))
-           ;; Remove non-free functions.
-           (define (delete-ifdefs file)
-             (with-atomic-file-replacement file
-               (lambda (in out)
-                 (let loop ((line (read-line in 'concat))
-                            (skipping? #f))
-                   (if (eof-object? line)
-                       #t
-                       (let ((skip-next?
-                              (or (and skipping?
-                                       (not (string-prefix?
-                                             "#endif //USE_SVMLIGHT" line)))
-                                  (string-prefix?
-                                   "#ifdef USE_SVMLIGHT" line))))
-                         (when (or (not skipping?)
-                                   (and skipping? (not skip-next?)))
-                           (display line out))
-                         (loop (read-line in 'concat) skip-next?)))))))
-           (for-each delete-ifdefs (find-files "src/shogun/kernel/"
-                                               "^Kernel\\.(cpp|h)"))))))
-    (build-system cmake-build-system)
-    (arguments
-     '(#:tests? #f ;no check target
-       #:phases
-       (alist-cons-after
-        'unpack 'delete-broken-symlinks
-        (lambda _
-          (for-each delete-file '("applications/arts/data"
-                                  "applications/asp/data"
-                                  "applications/easysvm/data"
-                                  "applications/msplicer/data"
-                                  "applications/ocr/data"
-                                  "examples/documented/data"
-                                  "examples/documented/matlab_static"
-                                  "examples/documented/octave_static"
-                                  "examples/undocumented/data"
-                                  "examples/undocumented/matlab_static"
-                                  "examples/undocumented/octave_static"
-                                  "tests/integration/data"
-                                  "tests/integration/matlab_static"
-                                  "tests/integration/octave_static"
-                                  "tests/integration/python_modular/tests"))
-          #t)
-        (alist-cons-after
-         'unpack 'change-R-target-path
-         (lambda* (#:key outputs #:allow-other-keys)
-           (substitute* '("src/interfaces/r_modular/CMakeLists.txt"
-                          "src/interfaces/r_static/CMakeLists.txt"
-                          "examples/undocumented/r_modular/CMakeLists.txt")
-             (("\\$\\{R_COMPONENT_LIB_PATH\\}")
-              (string-append (assoc-ref outputs "out")
-                             "/lib/R/library/")))
-           #t)
-         (alist-cons-after
-          'unpack 'fix-octave-modules
-          (lambda* (#:key outputs #:allow-other-keys)
-            (substitute* '("src/interfaces/octave_modular/CMakeLists.txt"
-                           "src/interfaces/octave_static/CMakeLists.txt")
-              (("^include_directories\\(\\$\\{OCTAVE_INCLUDE_DIRS\\}")
-               "include_directories(${OCTAVE_INCLUDE_DIRS} ${OCTAVE_INCLUDE_DIRS}/octave"))
-
-            ;; change target directory
-            (substitute* "src/interfaces/octave_modular/CMakeLists.txt"
-              (("\\$\\{OCTAVE_OCT_LOCAL_API_FILE_DIR\\}")
-               (string-append (assoc-ref outputs "out")
-                              "/share/octave/packages")))
-            #t)
-          (alist-cons-before
-           'build 'set-HOME
-           ;; $HOME needs to be set at some point during the build phase
-           (lambda _ (setenv "HOME" "/tmp") #t)
-           %standard-phases))))
-       #:configure-flags
-       (list "-DCMAKE_BUILD_WITH_INSTALL_RPATH=TRUE"
-             "-DUSE_SVMLIGHT=OFF" ;disable proprietary SVMLIGHT
-             ;;"-DJavaModular=ON" ;requires unpackaged jblas
-             ;;"-DRubyModular=ON" ;requires unpackaged ruby-narray
-             ;;"-DPerlModular=ON" ;"FindPerlLibs" does not exist
-             ;;"-DLuaModular=ON"  ;fails because lua doesn't build pkgconfig file
-             "-DOctaveModular=ON"
-             "-DOctaveStatic=ON"
-             "-DPythonModular=ON"
-             "-DPythonStatic=ON"
-             "-DRModular=ON"
-             "-DRStatic=ON"
-             "-DCmdLineStatic=ON")))
-    (inputs
-     `(("python" ,python)
-       ("numpy" ,python-numpy)
-       ("r" ,r)
-       ("octave" ,octave)
-       ("swig" ,swig)
-       ("hdf5" ,hdf5)
-       ("atlas" ,atlas)
-       ("arpack" ,arpack-ng)
-       ("lapack" ,lapack)
-       ("glpk" ,glpk)
-       ("libxml2" ,libxml2)
-       ("lzo" ,lzo)
-       ("zlib" ,zlib)))
-    (native-inputs
-     `(("pkg-config" ,pkg-config)))
-    (home-page "http://shogun-toolbox.org/")
-    (synopsis "Machine learning toolbox")
-    (description
-     "The Shogun Machine learning toolbox provides a wide range of unified and
-efficient Machine Learning (ML) methods.  The toolbox seamlessly allows to
-combine multiple data representations, algorithm classes, and general purpose
-tools.  This enables both rapid prototyping of data pipelines and extensibility
-in terms of new algorithms.")
-    (license license:gpl3+)))
-
 (define-public vcftools
   (package
     (name "vcftools")
@@ -2654,3 +2834,179 @@ data in the form of VCF files.")
     ;; The license is declared as LGPLv3 in the README and
     ;; at http://vcftools.sourceforge.net/license.html
     (license license:lgpl3)))
+
+(define-public vsearch
+  (package
+    (name "vsearch")
+    (version "1.4.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://github.com/torognes/vsearch/archive/v"
+             version ".tar.gz"))
+       (file-name (string-append name "-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0b1359wbzgb2cm04h7dq05v80vik88hnsv298xxd1q1f2q4ydni7"))
+       (modules '((guix build utils)))
+       (snippet
+        '(begin
+           ;; Remove bundled cityhash and '-mtune=native'.
+           (substitute* "src/Makefile.am"
+             (("^AM_CXXFLAGS=-I\\$\\{srcdir\\}/cityhash \
+-O3 -mtune=native -Wall -Wsign-compare")
+              (string-append "AM_CXXFLAGS=-lcityhash"
+                             " -O3 -Wall -Wsign-compare"))
+             (("^__top_builddir__bin_vsearch_SOURCES = cityhash/city.h \\\\")
+              "__top_builddir__bin_vsearch_SOURCES = \\")
+             (("^cityhash/config.h \\\\") "\\")
+             (("^cityhash/city.cc \\\\") "\\"))
+           (substitute* "src/vsearch.h"
+             (("^\\#include \"cityhash/city.h\"")
+              "#include <city.h>"))
+           (delete-file-recursively "src/cityhash")
+           #t))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'autogen
+                     (lambda _ (zero? (system* "autoreconf" "-vif")))))))
+    (inputs
+     `(("zlib" ,zlib)
+       ("bzip2" ,bzip2)
+       ("cityhash" ,cityhash)))
+    (native-inputs
+     `(("autoconf" ,autoconf)
+       ("automake" ,automake)))
+    (synopsis "Sequence search tools for metagenomics")
+    (description
+     "VSEARCH supports DNA sequence searching, clustering, chimera detection,
+dereplication, pairwise alignment, shuffling, subsampling, sorting and
+masking.  The tool takes advantage of parallelism in the form of SIMD
+vectorization as well as multiple threads to perform accurate alignments at
+high speed.  VSEARCH uses an optimal global aligner (full dynamic programming
+Needleman-Wunsch).")
+    (home-page "https://github.com/torognes/vsearch")
+    ;; vsearch uses non-portable SSE intrinsics so building fails on other
+    ;; platforms.
+    (supported-systems '("x86_64-linux"))
+    ;; Dual licensed; also includes public domain source.
+    (license (list license:gpl3 license:bsd-2))))
+
+(define-public bio-locus
+  (package
+    (name "bio-locus")
+    (version "0.0.7")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (rubygems-uri "bio-locus" version))
+       (sha256
+        (base32
+         "02vmrxyimkj9sahsp4zhfhnmbvz6dbbqz1y01vglf8cbwvkajfl0"))))
+    (build-system ruby-build-system)
+    (native-inputs
+     `(("ruby-rspec" ,ruby-rspec)))
+    (synopsis "Tool for fast querying of genome locations")
+    (description
+     "Bio-locus is a tabix-like tool for fast querying of genome
+locations.  Many file formats in bioinformatics contain records that
+start with a chromosome name and a position for a SNP, or a start-end
+position for indels.  Bio-locus allows users to store this chr+pos or
+chr+pos+alt information in a database.")
+    (home-page "https://github.com/pjotrp/bio-locus")
+    (license license:expat)))
+
+(define-public bio-blastxmlparser
+  (package
+    (name "bio-blastxmlparser")
+    (version "2.0.4")
+    (source (origin
+              (method url-fetch)
+              (uri (rubygems-uri "bio-blastxmlparser" version))
+              (sha256
+               (base32
+                "1wf4qygcmdjgcqm6flmvsagfr1gs9lf63mj32qv3z1f481zc5692"))))
+    (build-system ruby-build-system)
+    (propagated-inputs
+     `(("ruby-bio-logger" ,ruby-bio-logger)
+       ("ruby-nokogiri" ,ruby-nokogiri)))
+    (inputs
+     `(("ruby-rspec" ,ruby-rspec)))
+    (synopsis "Fast big data BLAST XML parser and library")
+    (description
+     "Very fast parallel big-data BLAST XML file parser which can be used as
+command line utility.  Use blastxmlparser to: Parse BLAST XML; filter output;
+generate FASTA, JSON, YAML, RDF, JSON-LD, HTML, CSV, tabular output etc.")
+    (home-page "http://github.com/pjotrp/blastxmlparser")
+    (license license:expat)))
+
+(define-public bioruby
+  (package
+    (name "bioruby")
+    (version "1.5.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (rubygems-uri "bio" version))
+       (sha256
+        (base32
+         "01k2fyjl5fpx4zn8g6gqiqvsg2j1fgixrs9p03vzxckynxdq3wmc"))))
+    (build-system ruby-build-system)
+    (propagated-inputs
+     `(("ruby-libxml" ,ruby-libxml)))
+    (native-inputs
+     `(("which" ,which)))  ; required for test phase
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'build 'patch-test-command
+          (lambda _
+            (substitute* '("test/functional/bio/test_command.rb")
+              (("/bin/sh") (which "sh")))
+            (substitute* '("test/functional/bio/test_command.rb")
+              (("/bin/ls") (which "ls")))
+            (substitute* '("test/functional/bio/test_command.rb")
+              (("which") (which "which")))
+            (substitute* '("test/functional/bio/test_command.rb",
+                           "test/data/command/echoarg2.sh")
+              (("/bin/echo") (which "echo")))
+            #t)))))
+    (synopsis "Ruby library, shell and utilities for bioinformatics")
+    (description "BioRuby comes with a comprehensive set of Ruby development
+tools and libraries for bioinformatics and molecular biology.  BioRuby has
+components for sequence analysis, pathway analysis, protein modelling and
+phylogenetic analysis; it supports many widely used data formats and provides
+easy access to databases, external programs and public web services, including
+BLAST, KEGG, GenBank, MEDLINE and GO.")
+    (home-page "http://bioruby.org/")
+    ;; Code is released under Ruby license, except for setup
+    ;; (LGPLv2.1+) and scripts in samples (which have GPL2 and GPL2+)
+    (license (list license:ruby license:lgpl2.1+ license:gpl2+ ))))
+
+(define-public r-qtl
+ (package
+  (name "r-qtl")
+  (version "1.37-11")
+  (source
+   (origin
+    (method url-fetch)
+    (uri (string-append "mirror://cran/src/contrib/qtl_"
+                        version ".tar.gz"))
+    (sha256
+     (base32
+      "0h20d36mww7ljp51pfs66xq33yq4b4fwq9nsh02dpmfhlaxgx1xi"))))
+  (build-system r-build-system)
+  (home-page "http://rqtl.org/")
+  (synopsis "R package for analyzing QTL experiments in genetics")
+  (description "R/qtl is an extension library for the R statistics
+system.  It is used to analyze experimental crosses for identifying
+genes contributing to variation in quantitative traits (so-called
+quantitative trait loci, QTLs).
+
+Using a hidden Markov model, R/qtl allows to estimate genetic maps, to
+identify genotyping errors, and to perform single-QTL and two-QTL,
+two-dimensional genome scans.")
+  (license license:gpl3)))

gnu/packages/bittorrent.scm

@@ -99,46 +99,40 @@ DHT, µTP, PEX and Magnet Links.")
 (define-public libtorrent
   (package
     (name "libtorrent")
-    (version "0.13.4")
+    (version "0.13.6")
     (source (origin
               (method url-fetch)
               (uri (string-append
-                    "http://libtorrent.rakshasa.no/downloads/libtorrent-"
+                    "http://rtorrent.net/downloads/libtorrent-"
                     version ".tar.gz"))
               (sha256
                (base32
-                "0ma910br5vxrfpm4f4w4942lpmhwvqjnnf9h8vpf52fw35qhjkkh"))))
+                "012s1nwcvz5m5r4d2z9klgy2n34kpgn9kgwgzxm97zgdjs6a0f18"))))
     (build-system gnu-build-system)
     (inputs `(("openssl" ,openssl)
               ("zlib" ,zlib)))
     (native-inputs `(("pkg-config" ,pkg-config)
-                     ;; Add this when you enable tests:
-                     ;; ("cppunit" ,cppunit)
-                     ))
-    (arguments
-     ;; FIXME: enable tests on the next release:
-     ;; https://github.com/rakshasa/libtorrent/issues/59
-     `(#:tests? #f))
+                     ("cppunit" ,cppunit)))
     (synopsis "BitTorrent library of rtorrent")
     (description
      "LibTorrent is a BitTorrent library used by and developed in parallel
 with the BitTorrent client rtorrent.  It is written in C++ with emphasis on
 speed and efficiency.")
-    (home-page "http://libtorrent.rakshasa.no/")
+    (home-page "https://github.com/rakshasa/libtorrent")
     (license l:gpl2+)))
 
 (define-public rtorrent
   (package
     (name "rtorrent")
-    (version "0.9.4")
+    (version "0.9.6")
     (source (origin
               (method url-fetch)
               (uri (string-append
-                    "http://libtorrent.rakshasa.no/downloads/rtorrent-"
+                    "http://rtorrent.net/downloads/rtorrent-"
                     version ".tar.gz"))
               (sha256
                (base32
-                "113yrrac75vqi4g8r6bgs0ggjllj9bkg9shv08vqzdhkwqg2q2mw"))))
+                "03jvzw9pi2mhcm913h8qg0qw9gwjqc6lhwynb1yz1y163x7w4s8y"))))
     (build-system gnu-build-system)
     (inputs `(("libtorrent" ,libtorrent)
               ("ncurses" ,ncurses)
@@ -153,5 +147,5 @@ speed and efficiency.")
      "rTorrent is a BitTorrent client with an ncurses interface.  It supports
 full encryption, DHT, PEX, and Magnet Links.  It can also be controlled via
 XML-RPC over SCGI.")
-    (home-page "http://libtorrent.rakshasa.no/")
+    (home-page "https://github.com/rakshasa/rtorrent")
     (license l:gpl2+)))

gnu/packages/bootstrap.scm

@@ -127,7 +127,7 @@ successful, or false to signal an error."
     (synopsis description)
     (description #f)
     (home-page #f)
-    (license #f)))
+    (license gpl3+)))
 
 (define package-with-bootstrap-guile
   (memoize
@@ -164,6 +164,8 @@ successful, or false to signal an error."
         ((string=? system "i686-linux") "/lib/ld-linux.so.2")
         ((string=? system "armhf-linux") "/lib/ld-linux-armhf.so.3")
         ((string=? system "mips64el-linux") "/lib/ld.so.1")
+        ((string=? system "i586-gnu") "/lib/ld.so.1")
+        ((string=? system "i686-gnu") "/lib/ld.so.1")
 
         ;; XXX: This one is used bare-bones, without a libc, so add a case
         ;; here just so we can keep going.

gnu/packages/calcurse.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2014, 2015 Eric Bavier <bavier@member.fsf.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -27,7 +27,7 @@
 (define-public calcurse
   (package
     (name "calcurse")
-    (version "3.2.1")
+    (version "4.0.0")
     (source
      (origin
       (method url-fetch)
@@ -35,9 +35,14 @@
                           version ".tar.gz"))
       (sha256
        (base32
-        "0g92c4x02iv2wi3c1sm3nz1ay96bi2m7klxq3qyyx3pr11l53m85"))))
+        "0d33cpkbhyidvm3xx6iw9ljqdvl6477c2kcwix3bs63nj0ch06v2"))))
     (build-system gnu-build-system)
     (inputs `(("ncurses" ,ncurses)))
+    (arguments
+     ;; The ical tests all want to create a ".calcurse" directory, and may
+     ;; fail with "cannot create directory '.calcurse': File exists" if run
+     ;; concurently.
+     '(#:parallel-tests? #f))
     (home-page "http://www.calcurse.org")
     (synopsis "Text-based calendar and scheduling")
     (description

gnu/packages/cdrom.scm

@@ -2,6 +2,7 @@
 ;;; Copyright © 2013, 2014, 2015 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2013, 2014 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
+;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -231,6 +232,25 @@ depend on the file system of the medium.  The maximum error correction
 capacity is user-selectable.")
     (license gpl2+)))
 
+(define-public libcue
+  (package
+    (name "libcue")
+    (version "1.4.0")
+    (source (origin
+             (method url-fetch)
+             (uri (string-append "mirror://sourceforge/libcue/libcue-"
+                                 version ".tar.bz2"))
+             (sha256
+              (base32
+               "17kjd7rjz1bvfn44n3n2bjb7a1ywd0yc0g4sqp5ihf9b5bn7cwlb"))))
+    (build-system gnu-build-system)
+    (home-page "http://libcue.sourceforge.net/")
+    (synopsis "C library to parse cue sheets")
+    (description "Libcue is a C library to parse so-called @dfn{cue sheets}
+which contain meta-data for CD/DVD tracks.  It provides an API to manipulate
+the data.")
+    (license gpl2+)))
+
 (define-public cd-discid
   (package
     (name "cd-discid")
@@ -264,7 +284,7 @@ from an audio CD.")
 (define-public abcde
   (package
     (name "abcde")
-    (version "2.6")
+    (version "2.7")
     (home-page "http://abcde.einval.com/")
     (source (origin
               (method url-fetch)
@@ -272,7 +292,7 @@ from an audio CD.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0y2cg233n2hixs0ji76dggpzgf52v4c4mnpwiai889ql2piafgk8"))
+                "0ikpffzvacadh6vj9qlary8126j1zrd2knp9gvivmp7y1656jj01"))
               (modules '((guix build utils)))
               (snippet
                '(substitute* "Makefile"

gnu/packages/certs.scm

@@ -26,6 +26,7 @@
   #:use-module (gnu packages)
   #:use-module (gnu packages gnuzilla)
   #:use-module (gnu packages python)
+  #:use-module (gnu packages perl)
   #:use-module (gnu packages tls))
 
 (define certdata2pem
@@ -76,7 +77,8 @@
     (outputs '("out"))
     (native-inputs
      `(("certdata2pem" ,certdata2pem)
-       ("openssl" ,openssl)))
+       ("openssl" ,openssl)
+       ("perl" ,perl)))                           ;for OpenSSL's 'c_rehash'
     (inputs '())
     (propagated-inputs '())
     (arguments

gnu/packages/check.scm

@@ -136,10 +136,9 @@ supervised tests.")
                                                  ,version)))
                      (begin
                        (for-each mkdir-p (list incdir docdir))
-                       (copy-file (string-append source
+                       (install-file (string-append source
                                                  "/single_include/catch.hpp")
-                                  (string-append incdir
-                                                 "/catch.hpp"))
+                                     incdir)
                        (copy-recursively (string-append source "/docs")
                                          docdir))))))
     (home-page "http://catch-lib.net/")

gnu/packages/cmake.scm

@@ -36,20 +36,19 @@
 (define-public cmake
   (package
     (name "cmake")
-    (version "3.2.2")
+    (version "3.3.2")
     (source (origin
              (method url-fetch)
-             (uri (string-append
-                   "http://www.cmake.org/files/v"
-                   (version-major+minor version)
-                   "/cmake-" version ".tar.gz"))
+             (uri (string-append "https://www.cmake.org/files/v"
+                                 (version-major+minor version)
+                                 "/cmake-" version ".tar.gz"))
              (sha256
-              (base32 "0y3w83al0vh9ll7fnqm3nx7l8hsl85k8iv9abxb791q36rp4xsdd"))
+              (base32
+               "08pwy9ip9cgwgynhn5vrjw8drw29gijy1rmziq22n65zds6ifnp7"))
              (patches (list (search-patch "cmake-fix-tests.patch")))))
     (build-system gnu-build-system)
     (arguments
      `(#:test-target "test"
-       #:parallel-tests? #f ; 3 test from RunCMake fails
        #:phases (alist-cons-before
                  'configure 'patch-bin-sh
                  (lambda _

gnu/packages/code.scm

@@ -67,14 +67,14 @@ a major mode for Emacs for examining the flowcharts that it produces.")
 (define-public complexity
   (package
     (name "complexity")
-    (version "1.2")
+    (version "1.3")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnu/complexity/complexity-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0pmlhlj1chl4caaqffvn1cy9z8gwmjbx97syi7pdfa0vqygkql6d"))))
+                "19bc64sxpqd5rqylqaa7dijz2x7qp2b0dg3ah3fb3qbcvd8b4wgy"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("texinfo" ,texinfo)
@@ -91,14 +91,14 @@ highlighting your own code that seemed comprehensible when you wrote it.")
 (define-public global                             ; a global variable
   (package
     (name "global")
-    (version "6.5")
+    (version "6.5.1")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://gnu/global/global-"
                                  version ".tar.gz"))
              (sha256
               (base32
-               "1af6lhwhrpdnigd3707fnk3dd6y53pbc4g0i75xjf0563bdi5zaa"))))
+               "1y34nbazsw2p6r2jhv27z15qvm9mhy5xjchpz8pwps00shkm578f"))))
     (build-system gnu-build-system)
     (inputs `(("ncurses" ,ncurses)
               ("libltdl" ,libltdl)
@@ -117,9 +117,8 @@ highlighting your own code that seemed comprehensible when you wrote it.")
                    (let* ((out  (assoc-ref outputs "out"))
                           (data (string-append out "/share/gtags"))
                           (lisp (string-append out "/share/emacs/site-lisp")))
-                     (mkdir-p lisp)
-                     (copy-file (string-append data "/gtags.el")
-                                (string-append lisp "/gtags.el"))
+                     (install-file (string-append data "/gtags.el")
+                                   lisp)
                      (delete-file (string-append data "/gtags.el"))
                      #t))
                  %standard-phases)))

gnu/packages/commencement.scm

@@ -419,18 +419,17 @@ exec ~a/bin/~a-~a -B~a/lib -Wl,-dynamic-linker -Wl,~a/~a \"$@\"~%"
                                   #:guile %bootstrap-guile))))
 
 (define static-bash-for-glibc
-  ;; A statically-linked Bash to be embedded in GLIBC-FINAL, for use by
-  ;; system(3) & co.
+  ;; A statically-linked Bash to be used by GLIBC-FINAL in system(3) & co.
   (let* ((gcc  (cross-gcc-wrapper gcc-boot0 binutils-boot0
                                   glibc-final-with-bootstrap-bash
                                   (car (assoc-ref %boot1-inputs "bash"))))
-         (bash (package (inherit bash-light)
+         (bash (package (inherit static-bash)
                  (native-inputs `(("bison" ,bison-boot1)))
                  (arguments
                   `(#:guile ,%bootstrap-guile
-                    ,@(package-arguments bash-light))))))
+                    ,@(package-arguments static-bash))))))
     (package-with-bootstrap-guile
-     (package-with-explicit-inputs (static-package bash)
+     (package-with-explicit-inputs bash
                                    `(("gcc" ,gcc)
                                      ("libc" ,glibc-final-with-bootstrap-bash)
                                      ,@(fold alist-delete %boot1-inputs
@@ -490,6 +489,7 @@ exec ~a/bin/~a-~a -B~a/lib -Wl,-dynamic-linker -Wl,~a/~a \"$@\"~%"
     (arguments
      `(#:allowed-references
        ,(cons* `(,gcc-boot0 "lib") (linux-libre-headers-boot0)
+               static-bash-for-glibc
                (package-outputs glibc-final-with-bootstrap-bash))
 
        ,@(package-arguments glibc-final-with-bootstrap-bash)))))
@@ -562,7 +562,8 @@ exec ~a/bin/~a-~a -B~a/lib -Wl,-dynamic-linker -Wl,~a/~a \"$@\"~%"
      `(#:guile ,%bootstrap-guile
        #:implicit-inputs? #f
 
-       #:allowed-references ("out" "lib" ,glibc-final)
+       #:allowed-references ("out" "lib"
+                             ,glibc-final ,static-bash-for-glibc)
 
        ;; Things like libasan.so and libstdc++.so NEED ld.so for some
        ;; reason, but it is not in their RUNPATH.  This is a false
@@ -596,8 +597,12 @@ exec ~a/bin/~a-~a -B~a/lib -Wl,-dynamic-linker -Wl,~a/~a \"$@\"~%"
            ((#:phases phases)
             `(alist-delete 'symlink-libgcc_eh ,phases)))))
 
-    ;; This time we want Texinfo, so we get the manual.
+    ;; This time we want Texinfo, so we get the manual.  Add
+    ;; STATIC-BASH-FOR-GLIBC so that it's used in the final shebangs of
+    ;; scripts such as 'mkheaders' and 'fixinc.sh' (XXX: who cares about these
+    ;; scripts?).
     (native-inputs `(("texinfo" ,texinfo-boot0)
+                     ("static-bash" ,static-bash-for-glibc)
                      ,@(package-native-inputs gcc-boot0)))
 
     (inputs `(("gmp-source" ,(bootstrap-origin (package-source gmp)))
@@ -655,8 +660,19 @@ exec ~a/bin/~a-~a -B~a/lib -Wl,-dynamic-linker -Wl,~a/~a \"$@\"~%"
                                               (current-source-location)
                                               #:guile %bootstrap-guile))))))
 
+(define-public ld-wrapper
+  ;; The final 'ld' wrapper, which uses the final Guile and Binutils.
+  (package (inherit ld-wrapper-boot3)
+    (name "ld-wrapper")
+    (inputs `(("guile" ,guile-final)
+              ("bash"  ,bash-final)
+              ,@(fold alist-delete (package-inputs ld-wrapper-boot3)
+                      '("guile" "bash"))))))
+
 (define %boot5-inputs
-  ;; Now with UTF-8 locale.
+  ;; Now with UTF-8 locales.  Remember that the bootstrap binaries were built
+  ;; with an older libc, which cannot load the new locale format.  See
+  ;; <https://lists.gnu.org/archive/html/guix-devel/2015-08/msg00737.html>.
   `(("locales" ,glibc-utf8-locales-final)
     ,@%boot4-inputs))
 
@@ -668,15 +684,6 @@ exec ~a/bin/~a-~a -B~a/lib -Wl,-dynamic-linker -Wl,~a/~a \"$@\"~%"
                                    ,@%boot5-inputs)
                                  (current-source-location))))
 
-(define-public ld-wrapper
-  ;; The final `ld' wrapper, which uses the final Guile.
-  (package (inherit ld-wrapper-boot3)
-    (name "ld-wrapper")
-    (inputs `(("guile" ,guile-final)
-              ("bash"  ,bash-final)
-              ,@(fold alist-delete (package-inputs ld-wrapper-boot3)
-                      '("guile" "bash"))))))
-
 (define coreutils-final
   ;; The final Coreutils.  Treat them specially because some packages, such as
   ;; Findutils, keep a reference to the Coreutils they were built with.
@@ -791,14 +798,6 @@ COREUTILS-FINAL vs. COREUTILS, etc."
                        (((names . directories) ...)
                         (union-build out directories)))
 
-                     ;; Remove the 'sh' and 'bash' binaries that come with
-                     ;; libc to avoid polluting the user's profile (these are
-                     ;; statically-linked binaries with no locale support and
-                     ;; so on.)
-                     (for-each (lambda (file)
-                                 (delete-file (string-append out "/bin/" file)))
-                               '("sh" "bash"))
-
                      (union-build (assoc-ref %outputs "debug")
                                   (list (assoc-ref %build-inputs
                                                    "libc-debug")))))))

gnu/packages/compression.scm

@@ -5,6 +5,9 @@
 ;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
 ;;; Copyright © 2015 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015 Leo Famulari <leo@famulari.name>
+;;; Copyright © 2015 Jeff Mickey <j@codemac.net>
+;;; Copyright © 2015 Efraim Flashner <efraim@flashner.co.il>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -23,6 +26,7 @@
 
 (define-module (gnu packages compression)
   #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (guix utils)
   #:use-module (guix packages)
   #:use-module (guix download)
   #:use-module (guix git-download)
@@ -30,6 +34,7 @@
   #:use-module (guix build-system perl)
   #:use-module (gnu packages base)
   #:use-module (gnu packages perl)
+  #:use-module (gnu packages valgrind)
   #:use-module ((srfi srfi-1) #:select (last)))
 
 (define-public zlib
@@ -222,14 +227,46 @@ decompression.")
                                   "See LICENSE in the distribution."))
       (home-page "http://www.bzip.org/"))))
 
+(define-public pbzip2
+  (package
+    (name "pbzip2")
+    (version "1.1.12")
+    (source (origin
+             (method url-fetch)
+             (uri (string-append "https://launchpad.net/pbzip2/"
+                                 (version-major+minor version) "/" version
+                                 "/+download/" name "-" version ".tar.gz"))
+             (sha256
+              (base32
+               "1vk6065dv3a47p86vmp8hv3n1ygd9hraz0gq89gvzlx7lmcb6fsp"))))
+    (build-system gnu-build-system)
+    (inputs
+     `(("bzip2", bzip2)))
+    (arguments
+     `(#:tests? #f ; no tests
+       #:phases (modify-phases %standard-phases
+                  (delete 'configure))
+       #:make-flags (list (string-append "PREFIX=" %output))))
+    (home-page "http://compression.ca/pbzip2/")
+    (synopsis "Parallel bzip2 implementation")
+    (description
+     "Pbzip2 is a parallel implementation of the bzip2 block-sorting file
+compressor that uses pthreads and achieves near-linear speedup on SMP machines.
+The output of this version is fully compatible with bzip2 v1.0.2 (i.e. anything
+compressed with pbzip2 can be decompressed with bzip2).")
+    (license (license:non-copyleft "file://COPYING"
+                                   "See COPYING in the distribution."))))
+
 (define-public xz
   (package
    (name "xz")
    (version "5.0.4")
    (source (origin
             (method url-fetch)
-            (uri (string-append "http://tukaani.org/xz/xz-" version
-                                ".tar.gz"))
+            (uri (list (string-append "http://tukaani.org/xz/xz-" version
+                                      ".tar.gz")
+                       (string-append "http://multiprecision.org/guix/xz-"
+                                      version ".tar.gz")))
             (sha256
              (base32
               "1dl35ca8fdss9z2d6y234gxh24ixq904xksizrjmjr5dimwhax6n"))))
@@ -251,7 +288,7 @@ than gzip and 15 % smaller output than bzip2.")
 (define-public lzo
   (package
     (name "lzo")
-    (version "2.06")
+    (version "2.09")
     (source
      (origin
       (method url-fetch)
@@ -259,7 +296,7 @@ than gzip and 15 % smaller output than bzip2.")
                           version ".tar.gz"))
       (sha256
        (base32
-        "0wryshs446s7cclrbjykyj766znhcpnr7s3cxy33ybfn6vwfcygz"))))
+        "0k5kpj3jnsjfxqqkblpfpx0mqcy86zs5fhjhgh2kq1hksg7ag57j"))))
     (build-system gnu-build-system)
     (arguments '(#:configure-flags '("--enable-shared")))
     (home-page "http://www.oberhumer.com/opensource/lzo")
@@ -355,17 +392,15 @@ This package is mostly for compatibility and historical interest.")
 (define-public sfarklib
   (package
     (name "sfarklib")
-    (version "2.23.5ca96b779")
+    (version "2.24")
     (source (origin
-              ;; The 2.23 tarball does not include the Makefile, but only
-              ;; Makefile.am.
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/raboof/sfArkLib.git")
-                    (commit (last (string-split version #\.)))))
+              (method url-fetch)
+              (uri (string-append "https://github.com/raboof/sfArkLib/archive/"
+                                  version ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "1hk1x88dl5b9jq016r6rx5wyszxknyv0sa7gmil4m4alnhwl4h7h"))))
+                "0bzs2d98rk1xw9qwpnc7gmlbxwmwc3dg1rpn310afy9pq1k9clzi"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f ;no "check" target
@@ -513,3 +548,114 @@ compression library.")
     (description "IO-Compress provides a Perl interface to allow reading and
 writing of compressed data created with the zlib and bzip2 libraries.")
     (license (package-license perl))))
+
+(define-public lz4
+  (package
+    (name "lz4")
+    (version "131")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://github.com/Cyan4973/lz4/archive/"
+                           "r" version ".tar.gz"))
+       (sha256
+        (base32 "1vfg305zvj50hwscad24wan9jar6nqj14gdk2hqyr7bb9mhh0kcx"))
+       (file-name (string-append name "-" version ".tar.gz"))))
+    (build-system gnu-build-system)
+    (native-inputs `(("valgrind" ,valgrind)))
+    (arguments
+     `(#:test-target "test"
+       #:parallel-tests? #f ; tests fail if run in parallel
+       #:make-flags (list "CC=gcc"
+                          (string-append "PREFIX=" (assoc-ref %outputs "out")))
+       #:phases (modify-phases %standard-phases
+                  (delete 'configure))))
+    (home-page "https://github.com/Cyan4973/lz4")
+    (synopsis "Compression algorithm focused on speed")
+    (description "LZ4 is a lossless compression algorithm, providing
+compression speed at 400 MB/s per core (0.16 Bytes/cycle).  It also features an
+extremely fast decoder, with speed in multiple GB/s per core (0.71 Bytes/cycle).
+A high compression derivative, called LZ4_HC, is also provided.  It trades CPU
+time for compression ratio.")
+    ;; The libraries (lz4, lz4hc, and xxhash are BSD licenced. The command
+    ;; line interface programs (lz4, fullbench, fuzzer, datagen) are GPL2+.
+    (license (list license:bsd-2 license:gpl2+))))
+
+(define-public squashfs-tools
+  (package
+    (name "squashfs-tools")
+    (version "4.3")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://sourceforge/squashfs/"
+                                  "squashfs" version ".tar.gz"))
+              (sha256
+               (base32
+                "1xpklm0y43nd9i6jw43y2xh5zvlmj9ar2rvknh0bh7kv8c95aq0d"))))
+    (build-system gnu-build-system)
+    (arguments
+     '(#:tests? #f ; no check target
+       #:make-flags
+       (list "CC=gcc"
+             "XZ_SUPPORT=1"
+             "LZO_SUPPORT=1"
+             "LZ4_SUPPORT=1"
+             (string-append "INSTALL_DIR=" %output "/bin"))
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'configure
+                  (lambda _
+                    (chdir "squashfs-tools"))))))
+    (inputs
+     `(("lz4" ,lz4)
+       ("lzo" ,lzo)
+       ("xz" ,xz)
+       ("zlib" ,zlib)))
+    (home-page "http://squashfs.sourceforge.net/")
+    (synopsis "Tools to create and extract squashfs filesystems")
+    (description
+     "Squashfs is a highly compressed read-only filesystem for Linux.  It uses
+zlib to compress files, inodes, and directories.  All blocks are packed to
+minimize the data overhead, and block sizes of between 4K and 1M are supported.
+It is intended to be used for archival use, for live CDs, and for embedded
+systems where low overhead is needed.  This package allows you to create and
+extract such filesystems.")
+    (license license:gpl2+)))
+
+(define-public pigz
+  (package
+    (name "pigz")
+    (version "2.3.3")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "http://zlib.net/pigz/"
+                                  name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "172hdf26k4zmm7z8md7nl0dph2a7mhf3x7slb9bhfyff6as6g2sf"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (delete 'configure)
+         (replace 'install
+                  (lambda* (#:key outputs #:allow-other-keys)
+                    (let* ((out (assoc-ref outputs "out"))
+                           (bin (string-append out "/bin"))
+                           (man (string-append out "/share/man/man1")))
+                      (install-file "pigz" bin)
+                      (symlink "pigz" (string-append bin  "/unpigz"))
+                      (install-file "pigz.1" man)
+                      #t))))
+       #:make-flags (list "CC=gcc")
+       #:test-target "tests"))
+    (inputs `(("zlib" ,zlib)))
+    (home-page "http://zlib.net/pigz/")
+    (synopsis "Parallel implementation of gzip")
+    (description
+     "This package provides a parallel implementation of gzip that exploits
+multiple processors and multiple cores when compressing data.")
+
+    ;; Things under zopfli/ are under ASL2.0, but 4 files at the top-level,
+    ;; written by Mark Adler, are under another non-copyleft license.
+    (license license:asl2.0)))

gnu/packages/conkeror.scm

@@ -1,6 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2014 Cyrill Schenkel <cyrill.schenkel@gmail.com>
-;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2014, 2015 Eric Bavier <bavier@member.fsf.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -28,46 +28,42 @@
 (define-public conkeror
   (package
     (name "conkeror")
-    (version "1.0pre1")
+    (version "1.0pre1.20150730")
     (source (origin
               (method url-fetch)
               (uri
                (string-append "http://repo.or.cz/w/conkeror.git/snapshot/"
-                              "8a26fff5896a3360549e2adfbf06b1d57e909266"
-                              ".tar.gz")) ; tag: debian-1.0--pre-1+git140616-1
+                              "a1f7e879b129df5cf14ea4ce80a9c1407380ed58"
+                              ".tar.gz")) ; tag: debian-1.0--pre-1+git150730-1
               (sha256
                (base32
-                "1cgjzi7g3g22zcx6bpfnid4i12sb45w6icmxdzjn8d3c0m8qsyp1"))))
+                "1q45hc30733gz3ca2ixvw0rzzcbi7rlay7gx7kvzjv17a030nyk0"))))
     (build-system gnu-build-system)
     (inputs `(("icecat" ,icecat)))
     (arguments
      `(#:tests? #f                      ;no tests
-       #:make-flags '("CC=gcc")
+       #:make-flags `("CC=gcc"
+                      ,(string-append "PREFIX=" (assoc-ref %outputs "out")))
        #:phases
-       (alist-delete
-        'configure
-        (alist-replace
-         'install
-         (lambda _
-           (begin
-             (use-modules (guix build utils))
-             (let* ((datadir  (string-append %output "/share/conkeror"))
-                    (bindir   (string-append %output "/bin"))
-                    (launcher (string-append bindir  "/conkeror"))
-                    (spawn    (string-append bindir  "/conkeror-spawn-helper")))
-               (copy-recursively "." datadir)
-               (mkdir-p bindir)
-               (copy-file "conkeror-spawn-helper" spawn)
-               (call-with-output-file launcher
-                 (lambda (p)
-                   (format p "#!~a/bin/bash
+       (modify-phases %standard-phases
+         (delete 'configure)
+         (add-after
+          'install 'install-app-launcher
+          (lambda* (#:key inputs outputs #:allow-other-keys)
+            ;; This overwrites the installed launcher, which execs xulrunner,
+            ;; with one that execs 'icecat --app'
+            (let* ((out      (assoc-ref outputs "out"))
+                   (datadir  (string-append out "/share/conkeror"))
+                   (launcher (string-append out "/bin/conkeror")))
+              (call-with-output-file launcher
+                (lambda (p)
+                  (format p "#!~a/bin/bash
 exec ~a/bin/icecat --app ~a \"$@\"~%"
-                           (assoc-ref %build-inputs "bash") ;implicit input
-                           (assoc-ref %build-inputs "icecat")
-                           (string-append datadir
-                                          "/application.ini"))))
-               (chmod launcher #o555))))
-         %standard-phases))))
+                          (assoc-ref inputs "bash") ;implicit input
+                          (assoc-ref inputs "icecat")
+                          (string-append datadir
+                                         "/application.ini"))))
+              (chmod launcher #o555)))))))
     (synopsis "Keyboard focused web browser with Emacs look and feel")
     (description "Conkeror is a highly-programmable web browser based on
 Mozilla XULRunner which is the base of all Mozilla products including Firefox.

gnu/packages/conky.scm

@@ -0,0 +1,79 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2015 Siniša Biđin <sinisa@bidin.eu>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages conky)
+  #:use-module (guix packages)
+  #:use-module (guix utils)
+  #:use-module (guix download)
+  #:use-module (guix git-download)
+  #:use-module (guix build-system cmake)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (gnu packages fontutils)
+  #:use-module (gnu packages ncurses)
+  #:use-module (gnu packages lua)
+  #:use-module (gnu packages pkg-config)
+  #:use-module (gnu packages xorg))
+
+(define-public conky
+  (package
+    (name "conky")
+    (version "1.10.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://github.com/brndnmtthws/conky/archive/v"
+                           version ".tar.gz"))
+       (file-name (string-append name "-" version ".tar.gz"))
+       (sha256
+        (base32 "1szq4ckfkvyabv5llf9nkdxipn7429sralsxyr7z0dyc3zwz74pk"))))
+    (build-system cmake-build-system)
+    (arguments
+     `(#:tests? #f ; there are no tests
+       #:phases
+       (alist-cons-after
+        'unpack 'add-freetype-to-search-path
+        (lambda* (#:key inputs #:allow-other-keys)
+          (substitute* "cmake/ConkyPlatformChecks.cmake"
+            (("set\\(INCLUDE_SEARCH_PATH")
+             (string-append
+              "set(INCLUDE_SEARCH_PATH "
+              (assoc-ref inputs "freetype") "/include/freetype2 ")))
+          #t)
+        (alist-replace
+         'install
+         (lambda* (#:key outputs #:allow-other-keys)
+           (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
+             (mkdir-p bin)
+             (copy-file "src/conky" (string-append bin "/conky"))))
+         %standard-phases))))
+    (inputs
+     `(("freetype" ,freetype)
+       ("ncurses" ,ncurses)
+       ("libx11" ,libx11)
+       ("libxdamage" ,libxdamage)
+       ("libxft" ,libxft)
+       ("lua" ,lua)))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (home-page "https://github.com/brndnmtthws/conky")
+    (synopsis "Lightweight system monitor for X")
+    (description
+     "Conky is a lightweight system monitor for X that displays operating
+system statistics (CPU, disk, and memory usage, etc.) and more on the
+desktop.")
+    (license license:gpl3+)))

gnu/packages/cpio.scm

@@ -28,29 +28,15 @@
 (define-public cpio
   (package
     (name "cpio")
-    (version "2.11")
+    (version "2.12")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://gnu/cpio/cpio-"
                                  version ".tar.bz2"))
              (sha256
               (base32
-               "1gavgpzqwgkpagjxw72xgxz52y1ifgz0ckqh8g7cckz7jvyhp0mv"))
-             (patches (map search-patch
-                           '("cpio-CVE-2014-9112-pt1.patch"
-                             "cpio-CVE-2014-9112-pt2.patch"
-                             "cpio-CVE-2014-9112-pt3.patch"
-                             "cpio-CVE-2014-9112-pt4.patch"
-                             "cpio-CVE-2014-9112-pt5.patch"
-                             "cpio-fix-symlink-bad-length-test.patch"
-                             "cpio-gets-undeclared.patch")))))
+               "0vi9q475h1rki53100zml75vxsykzyhrn70hidy41s5c2rc8r6bh"))))
     (build-system gnu-build-system)
-
-    ;; FIXME: autoconf is needed to run autom4te, to update to test suite
-    ;;        after the CVE-2014-9112 patches.  Remove this when cpio is
-    ;;        updated to post-2.11.
-    (native-inputs `(("autoconf" ,autoconf)))
-
     (home-page "https://www.gnu.org/software/cpio/")
     (synopsis "Manage cpio and tar file archives")
     (description

gnu/packages/cross-base.scm

@@ -100,7 +100,9 @@ may be either a libc package or #f.)"
        ((#:configure-flags flags)
         `(append (list ,(string-append "--target=" target)
                        ,@(if libc
-                             '()
+                             `( ;; Disable libcilkrts because it is not
+                                ;; ported to GNU/Hurd. 
+                               "--disable-libcilkrts")
                              `( ;; Disable features not needed at this stage.
                                "--disable-shared" "--enable-static"
 
@@ -116,6 +118,7 @@ may be either a libc package or #f.)"
                                "--disable-libssp"
                                "--disable-libquadmath"
                                "--disable-decimal-float" ;would need libc
+                               "--disable-libcilkrts"
                                )))
 
                  ,(if libc

gnu/packages/cups.scm

@@ -37,7 +37,7 @@
 (define-public cups-filters
   (package
     (name "cups-filters")
-    (version "1.0.71")
+    (version "1.0.75")
     (source (origin
               (method url-fetch)
               (uri
@@ -45,7 +45,7 @@
                               "cups-filters-" version ".tar.xz"))
               (sha256
                (base32
-                "07wwlqcykfjfqcwj1bxk60ggahyaw7wcx32n5s104d1qkhham01i"))
+                "0wrh9jmd2rm4z8c8nb50llb10shj1hik9vwqnr0djcvf63mfqsbw"))
               (modules '((guix build utils)))
               (snippet
                ;; install backends, banners and filters to cups-filters output
@@ -71,7 +71,8 @@
          ,(string-append "--with-rcdir="
                          (assoc-ref %outputs "out") "/etc/rc.d"))))
     (native-inputs
-     `(("pkg-config" ,pkg-config)))
+     `(("glib" ,glib "bin") ; for gdbus-codegen
+       ("pkg-config" ,pkg-config)))
     (inputs
      `(("fontconfig"   ,fontconfig)
        ("freetype"     ,freetype)
@@ -109,14 +110,14 @@ filters for the PDF-centric printing workflow introduced by OpenPrinting.")
 (define-public cups-minimal
   (package
     (name "cups-minimal")
-    (version "2.0.3")
+    (version "2.1.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "http://www.cups.org/software/"
-                                  version "/cups-" version "-source.tar.gz"))
+                                  version "/cups-" version "-source.tar.bz2"))
               (sha256
                (base32
-                "1kq1kpny0hghqgbjvashlv6qw1xn0c1p3d4r3cx8qxdzd2ifk4lf"))))
+                "1jfjqsw9l7jbn5kb9i96k0wj12kjdbgx0rd8157dif22hi0kh0ms"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags

gnu/packages/curl.scm

@@ -1,7 +1,8 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2013, 2014 Andreas Enge <andreas@enge.fr>
+;;; Copyright © 2013, 2014, 2015 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2015 Tomáš Čech <sleep_walker@suse.cz>
+;;; Copyright © 2015 Ludovic Courtès <ludo@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -38,15 +39,17 @@
 (define-public curl
   (package
    (name "curl")
-   (version "7.43.0")
+   (version "7.45.0")
    (source (origin
             (method url-fetch)
             (uri (string-append "http://curl.haxx.se/download/curl-"
                                 version ".tar.lzma"))
             (sha256
              (base32
-              "1ykpfsm5ildpcj3vw5m1xh49jk3yfpna6zj7r0fgi1bxki6xif72"))))
+              "0bamqik0mi2rmai016iakwrwmsz0s5xad1ghkbwsd3zkv08rgkcn"))))
    (build-system gnu-build-system)
+   (outputs '("out"
+              "doc"))                             ;1.2 MiB of man3 pages
    (inputs `(("gnutls" ,gnutls)
              ("gss" ,gss)
              ("libidn" ,libidn)
@@ -63,40 +66,50 @@
     `(#:configure-flags '("--with-gnutls" "--with-gssapi")
       ;; Add a phase to patch '/bin/sh' occurances in tests/runtests.pl
       #:phases
-      (alist-replace
-       'check
-       (lambda _
-         (substitute* "tests/runtests.pl"
-           (("/bin/sh") (which "sh")))
-         ;; Test #1135 requires extern-scan.pl, which is not part of the
-         ;; tarball due to a mistake.  It has been fixed upstream.  We can
-         ;; simply disable the test as it is specific to VMS and OS/400.
-         (delete-file "tests/data/test1135")
+      (modify-phases %standard-phases
+        (add-after
+         'install 'move-man3-pages
+         (lambda* (#:key outputs #:allow-other-keys)
+           ;; Move section 3 man pages to "doc".
+           (let ((out (assoc-ref outputs "out"))
+                 (doc (assoc-ref outputs "doc")))
+             (mkdir-p (string-append doc "/share/man"))
+             (rename-file (string-append out "/share/man/man3")
+                          (string-append doc "/share/man/man3"))
+             #t)))
+        (replace
+         'check
+         (lambda _
+           (substitute* "tests/runtests.pl"
+             (("/bin/sh") (which "sh")))
+           ;; Test #1135 requires extern-scan.pl, which is not part of the
+           ;; tarball due to a mistake.  It has been fixed upstream.  We can
+           ;; simply disable the test as it is specific to VMS and OS/400.
+           (delete-file "tests/data/test1135")
 
-         ;; XXX FIXME: Test #1510 seems to work on some machines and not
-         ;; others, possibly based on the kernel version.  It works on GuixSD
-         ;; on x86_64 with linux-libre-4.1, but fails on Hydra for both i686
-         ;; and x86_64 with the following error:
-         ;;
-         ;; test 1510...[HTTP GET connection cache limit (CURLOPT_MAXCONNECTS)]
-         ;;
-         ;;  1510: output (log/stderr1510) FAILED:
-         ;; --- log/check-expected	2015-06-27 07:45:53.166720834 +0000
-         ;; +++ log/check-generated	2015-06-27 07:45:53.166720834 +0000
-         ;; @@ -1,5 +1,5 @@
-         ;;  * Connection #0 to host server1.example.com left intact[LF]
-         ;;  * Connection #1 to host server2.example.com left intact[LF]
-         ;;  * Connection #2 to host server3.example.com left intact[LF]
-         ;; -* Closing connection 0[LF]
-         ;; +* Closing connection 1[LF]
-         ;;  * Connection #3 to host server4.example.com left intact[LF]
-         (delete-file "tests/data/test1510")
+           ;; XXX FIXME: Test #1510 seems to work on some machines and not
+           ;; others, possibly based on the kernel version.  It works on GuixSD
+           ;; on x86_64 with linux-libre-4.1, but fails on Hydra for both i686
+           ;; and x86_64 with the following error:
+           ;;
+           ;; test 1510...[HTTP GET connection cache limit (CURLOPT_MAXCONNECTS)]
+           ;;
+           ;;  1510: output (log/stderr1510) FAILED:
+           ;; --- log/check-expected	2015-06-27 07:45:53.166720834 +0000
+           ;; +++ log/check-generated	2015-06-27 07:45:53.166720834 +0000
+           ;; @@ -1,5 +1,5 @@
+           ;;  * Connection #0 to host server1.example.com left intact[LF]
+           ;;  * Connection #1 to host server2.example.com left intact[LF]
+           ;;  * Connection #2 to host server3.example.com left intact[LF]
+           ;; -* Closing connection 0[LF]
+           ;; +* Closing connection 1[LF]
+           ;;  * Connection #3 to host server4.example.com left intact[LF]
+           (delete-file "tests/data/test1510")
 
-         ;; The top-level "make check" does "make -C tests quiet-test", which
-         ;; is too quiet.  Use the "test" target instead, which is more
-         ;; verbose.
-         (zero? (system* "make" "-C" "tests" "test")))
-       %standard-phases)))
+           ;; The top-level "make check" does "make -C tests quiet-test", which
+           ;; is too quiet.  Use the "test" target instead, which is more
+           ;; verbose.
+           (zero? (system* "make" "-C" "tests" "test")))))))
    (synopsis "Command line tool for transferring data with URL syntax")
    (description
     "curl is a command line tool for transferring data with URL syntax,

gnu/packages/cyrus-sasl.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2013, 2014 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2013, 2014, 2015 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2013 Andreas Enge <andreas@enge.fr>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -19,7 +19,7 @@
 
 (define-module (gnu packages cyrus-sasl)
   #:use-module (gnu packages)
-  #:use-module (gnu packages gdbm)
+  #:use-module (gnu packages databases)
   #:use-module (gnu packages mit-krb5)
   #:use-module (gnu packages tls)
   #:use-module ((guix licenses) #:prefix license:)

gnu/packages/databases.scm

@@ -1,6 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2012, 2013, 2014, 2015 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2012, 2014 Andreas Enge <andreas@enge.fr>
+;;; Copyright © 2012, 2014, 2015 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2013 Cyril Roelandt <tipecaml@gmail.com>
 ;;; Copyright © 2014 David Thompson <davet@gnu.org>
 ;;; Copyright © 2014, 2015 Mark H Weaver <mhw@netris.org>
@@ -43,7 +43,7 @@
   #:use-module (gnu packages jemalloc)
   #:use-module ((guix licenses)
                 #:select (gpl2 gpl3+ lgpl2.1+ lgpl3+ x11-style non-copyleft
-                          bsd-2 public-domain))
+                          bsd-2 bsd-3 public-domain))
   #:use-module (guix packages)
   #:use-module (guix download)
   #:use-module (guix build-system gnu)
@@ -53,6 +53,28 @@
   #:use-module (srfi srfi-26)
   #:use-module (ice-9 match))
 
+(define-public gdbm
+  (package
+    (name "gdbm")
+    (version "1.11")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://gnu/gdbm/gdbm-"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "1hz3jgh3pd4qzp6jy0l8pd8x01g9abw7csnrlnj1a2sxy122z4cd"))))
+    (arguments `(#:configure-flags '("--enable-libgdbm-compat")))
+    (build-system gnu-build-system)
+    (home-page "http://www.gnu.org/software/gdbm/")
+    (synopsis
+     "Hash library of database functions compatible with traditional dbm")
+    (description
+     "GDBM is a library for manipulating hashed databases.  It is used to
+store key/value pairs in a file in a manner similar to the Unix dbm library
+and provides interfaces to the traditional file format.")
+    (license gpl3+)))
+
 (define-public bdb
   (package
     (name "bdb")
@@ -68,26 +90,31 @@
                "doc"))                           ; 94 MiB of HTML docs
     (arguments
      '(#:tests? #f                            ; no check target available
-                #:phases
-                (alist-replace
-                 'configure
-                 (lambda* (#:key outputs #:allow-other-keys)
-                   (let ((out (assoc-ref outputs "out"))
-                         (doc (assoc-ref outputs "doc")))
-                     ;; '--docdir' is not honored, so we need to patch.
-                     (substitute* "dist/Makefile.in"
-                       (("docdir[[:blank:]]*=.*")
-                        (string-append "docdir = " doc "/share/doc/bdb")))
+       #:phases
+       (alist-replace
+        'configure
+        (lambda* (#:key outputs #:allow-other-keys)
+          (let ((out (assoc-ref outputs "out"))
+                (doc (assoc-ref outputs "doc")))
+            ;; '--docdir' is not honored, so we need to patch.
+            (substitute* "dist/Makefile.in"
+              (("docdir[[:blank:]]*=.*")
+               (string-append "docdir = " doc "/share/doc/bdb")))
 
-                     (zero?
-                      (system* "./dist/configure"
-                               (string-append "--prefix=" out)
-                               (string-append "CONFIG_SHELL=" (which "bash"))
-                               (string-append "SHELL=" (which "bash"))
+            (zero?
+             (system* "./dist/configure"
+                      (string-append "--prefix=" out)
+                      (string-append "CONFIG_SHELL=" (which "bash"))
+                      (string-append "SHELL=" (which "bash"))
 
-                               ;; The compatibility mode is needed by some packages,
-                               ;; notably iproute2.
-                               "--enable-compat185"))))
+                      ;; The compatibility mode is needed by some packages,
+                      ;; notably iproute2.
+                      "--enable-compat185"
+
+                      ;; The following flag is needed so that the inclusion
+                      ;; of db_cxx.h into C++ files works; it leads to
+                      ;; HAVE_CXX_STDHEADERS being defined in db_cxx.h.
+                      "--enable-cxx"))))
                  %standard-phases)))
     (synopsis "Berkeley database")
     (description
@@ -284,7 +311,8 @@ pictures, sounds, or video.")
     (arguments '(#:parallel-tests? #f))
 
     (native-inputs `(("emacs" ,emacs-no-x)
-                     ("bc" ,bc)))
+                     ("bc" ,bc)
+                     ("libuuid", util-linux)))
 
     ;; TODO: Add more optional inputs.
     ;; FIXME: Our Bash doesn't have development headers (need for the 'readrec'
@@ -306,7 +334,7 @@ types are supported, as is encryption.")
 (define-public sqlite
   (package
    (name "sqlite")
-   (version "3.8.10.2")
+   (version "3.8.11.1")
    (source (origin
             (method url-fetch)
             ;; TODO: Download from sqlite.org once this bug :
@@ -321,12 +349,23 @@ types are supported, as is encryption.")
                                             (map (cut string-pad <> 2 #\0)
                                                  other-digits))
                                            6 #\0))))))
-                   (string-append
-                    "mirror://sourceforge/sqlite.mirror/SQLite%20" version
-                    "/sqlite-autoconf-" numeric-version ".tar.gz")))
+                   (list
+                    (string-append
+                     "https://fossies.org/linux/misc/sqlite-autoconf-"
+                     numeric-version ".tar.gz")
+                    (string-append
+                     "http://distfiles.gentoo.org/distfiles/"
+                     "/sqlite-autoconf-" numeric-version ".tar.gz"))
+
+                   ;; XXX: As of 2015-09-08, SourceForge is squatting the URL
+                   ;; below, returning 200 and showing an advertising page.
+                   ;; (string-append
+                   ;;  "mirror://sourceforge/sqlite.mirror/SQLite%20" version
+                   ;;  "/sqlite-autoconf-" numeric-version ".tar.gz")
+                   ))
             (sha256
              (base32
-              "09nnaqx50gl1vmfvdipirizr61q3s0ywlql50f9kr1bx9rdfb0l3"))))
+              "1dnkl4qr1dgaprbyf3jddfiynkhxnin86qabni47wjlc0fnb16gv"))))
    (build-system gnu-build-system)
    (inputs `(("readline" ,readline)))
    (arguments
@@ -725,5 +764,32 @@ Driver.")
 self-contained, serverless, zero-configuration, transactional NoSQL
 database engine.  UnQLite is a document store database similar to
 MongoDB, Redis, CouchDB, etc. as well as a standard Key/Value store
-similar to BerkelyDB, LevelDB, etc.")
+similar to BerkeleyDB, LevelDB, etc.")
     (license bsd-2)))
+
+(define-public redis
+  (package
+    (name "redis")
+    (version "3.0.4")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "http://download.redis.io/releases/redis-"
+                                  version".tar.gz"))
+              (sha256
+               (base32
+                "1kqjc4qrasadgnl3cg71x3g5qpw2rilyk4pwl151698rb2nr0pm3"))))
+    (build-system gnu-build-system)
+    (arguments
+     '(#:tests? #f ; tests related to master/slave and replication fail
+       #:phases (modify-phases %standard-phases
+                  (delete 'configure))
+       #:make-flags `("CC=gcc"
+                      "MALLOC=libc"
+                      ,(string-append "PREFIX="
+                                      (assoc-ref %outputs "out")))))
+    (synopsis "Key-value cache and store")
+    (description "Redis is an advanced key-value cache and store.  Redis
+supports many data structures including strings, hashes, lists, sets, sorted
+sets, bitmaps and hyperloglogs.")
+    (home-page "http://redis.io/")
+    (license bsd-3)))

gnu/packages/debug.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2014, 2015 Eric Bavier <bavier@member.fsf.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -27,7 +27,10 @@
   #:use-module (gnu packages indent)
   #:use-module (gnu packages llvm)
   #:use-module (gnu packages perl)
-  #:use-module (gnu packages pretty-print))
+  #:use-module (gnu packages pretty-print)
+  #:use-module (gnu packages qemu)
+  #:use-module (ice-9 match)
+  #:use-module (srfi srfi-1))
 
 (define-public delta
   (package
@@ -81,7 +84,7 @@ program to exhibit a bug.")
 (define-public c-reduce
   (package
     (name "c-reduce")
-    (version "2.2.1")
+    (version "2.3.0")
     (source
      (origin
       (method url-fetch)
@@ -90,7 +93,7 @@ program to exhibit a bug.")
                            "creduce-" version ".tar.gz")))
       (sha256
        (base32
-        "0wh0fkyg2l41d2wkndrgdiai9g2qiav7jik7cys21vmgzq01pyy2"))
+        "0r9lvnifjcnsrkrk8k4mha1kmmb93jya7alm523ck59y3173bpi0"))
       (modules '((guix build utils)))
       (snippet
        '(substitute* "clang_delta/TransformationManager.cpp"
@@ -99,8 +102,8 @@ program to exhibit a bug.")
     (inputs
      `(("astyle"          ,astyle)
        ("delta"           ,delta)
-       ("llvm"            ,llvm-3.5)
-       ("clang"           ,clang-3.5)
+       ("llvm"            ,llvm)
+       ("clang"           ,clang)
        ("flex"            ,flex)
        ("indent"          ,indent)
        ("perl"            ,perl)
@@ -137,3 +140,117 @@ produces a much smaller C/C++ program that has the same property.  It is
 intended for use by people who discover and report bugs in compilers and other
 tools that process C/C++ code.")
     (license ncsa)))
+
+(define qemu-2.3.0
+  (package
+    (inherit qemu-headless)
+    (version "2.3.0")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "http://wiki.qemu-project.org/download/qemu-"
+                    version ".tar.bz2"))
+              (sha256
+               (base32
+                "120m53c3p28qxmfzllicjzr8syjv6v4d9rsyrgkp7gnmcgvvgfmn"))))
+    (arguments
+     ;; XXX: Disable tests because of GTester's rejection of duplicate test
+     ;; names, which wasn't addressed in this version of QEMU.
+     `(#:tests? #f
+       ,@(package-arguments qemu-headless)))))
+
+(define-public american-fuzzy-lop
+  (let ((machine (match (or (%current-target-system)
+                            (%current-system))
+                   ("x86_64-linux"   "x86_64")
+                   ("i686-linux"     "i386")
+                   ;; Prevent errors when querying this package on unsupported
+                   ;; platforms, e.g. when running "guix package --search="
+                   (_                "UNSUPPORTED"))))
+    (package
+      (name "american-fuzzy-lop")
+      (version "1.86b")             ;It seems all releases have the 'b' suffix
+      (source
+       (origin
+         (method url-fetch)
+         (uri (string-append "http://lcamtuf.coredump.cx/afl/releases/"
+                             "afl-" version ".tgz"))
+         (sha256
+          (base32
+           "1by9ncf6lgcyibzqwyla34jv64sd66mn8zhgjz2pcgsds51qwn0r"))))
+      (build-system gnu-build-system)
+      (inputs
+       `(("custom-qemu"
+          ;; The afl-qemu tool builds qemu 2.3.0 with a few patches applied.
+          ,(package (inherit qemu-2.3.0)
+             (name "afl-qemu")
+             (inputs
+              `(("afl-src" ,source)
+                ,@(package-inputs qemu-2.3.0)))
+             ;; afl only supports using a single afl-qemu-trace executable, so
+             ;; we only build qemu for the native target.
+             (arguments
+              `(#:configure-flags
+                (list (string-append "--target-list=" ,machine "-linux-user"))
+                #:modules ((srfi srfi-1)
+                           ,@%gnu-build-system-modules)
+                ,@(substitute-keyword-arguments (package-arguments qemu-2.3.0)
+                    ((#:phases qemu-phases)
+                     `(modify-phases ,qemu-phases
+                        (add-after
+                         'unpack 'apply-afl-patches
+                         (lambda* (#:key inputs #:allow-other-keys)
+                           (let* ((afl-dir (string-append "afl-" ,version))
+                                  (patch-dir
+                                   (string-append afl-dir
+                                                  "/qemu_mode/patches")))
+                             (unless (zero?
+                                      (system* "tar" "xf"
+                                               (assoc-ref inputs "afl-src")))
+                               (error "tar failed to unpack afl-src"))
+                             (copy-file (string-append patch-dir
+                                                       "/afl-qemu-cpu-inl.h")
+                                        "./afl-qemu-cpu-inl.h")
+                             (copy-file (string-append afl-dir "/config.h")
+                                        "./afl-config.h")
+                             (copy-file (string-append afl-dir "/types.h")
+                                        "./types.h")
+                             (substitute* "afl-qemu-cpu-inl.h"
+                               (("\\.\\./\\.\\./config.h") "afl-config.h"))
+                             (substitute* (string-append patch-dir
+                                                         "/cpu-exec.diff")
+                               (("\\.\\./patches/") ""))
+                             (every (lambda (patch-file)
+                                      (zero? (system* "patch" "--force" "-p1"
+                                                      "--input" patch-file)))
+                                    (find-files patch-dir
+                                                "\\.diff$"))))))))))))))
+      (arguments
+       `(#:make-flags (list (string-append "PREFIX=" (assoc-ref %outputs "out"))
+                            "CC=gcc")
+         #:phases (modify-phases %standard-phases
+                    (delete 'configure)
+                    (add-after
+                     ;; TODO: Build and install the afl-llvm tool.
+                     'install 'install-qemu
+                     (lambda* (#:key inputs outputs #:allow-other-keys)
+                       (let ((qemu (assoc-ref inputs "custom-qemu"))
+                             (out  (assoc-ref outputs "out")))
+                         (copy-file (string-append qemu "/bin/qemu-" ,machine)
+                                    (string-append out "/bin/afl-qemu-trace"))
+                         #t)))
+                    (delete 'check))))
+      (supported-systems (fold delete
+                               %supported-systems
+                               '("armhf-linux" "mips64el-linux")))
+      (home-page "http://lcamtuf.coredump.cx/afl")
+      (synopsis "Security-oriented fuzzer")
+      (description
+       "American fuzzy lop is a security-oriented fuzzer that employs a novel
+type of compile-time instrumentation and genetic algorithms to automatically
+discover clean, interesting test cases that trigger new internal states in the
+targeted binary.  This substantially improves the functional coverage for the
+fuzzed code.  The compact synthesized corpora produced by the tool are also
+useful for seeding other, more labor- or resource-intensive testing regimes
+down the road.")
+      (license asl2.0))))

gnu/packages/disk.scm

@@ -101,7 +101,7 @@ tables, and it understands a variety of different formats.")
 (define-public ddrescue
   (package
     (name "ddrescue")
-    (version "1.19")
+    (version "1.20")
     (source
      (origin
       (method url-fetch)
@@ -109,7 +109,7 @@ tables, and it understands a variety of different formats.")
                           version ".tar.lz"))
       (sha256
        (base32
-        "1f278w7i9sx45jk6fsw1kyzx743k3alx1c4w1q8sk05ckafhr3gd"))))
+        "1gb0ak2c47nass7qdf9pnfrshcb38c318z1fx5v5v1k7l6qr7yc3"))))
     (build-system gnu-build-system)
     (home-page "http://www.gnu.org/software/ddrescue/ddrescue.html")
     (synopsis "Data recovery utility")
@@ -124,7 +124,7 @@ to recover data more efficiently by only reading the necessary blocks.")
 (define-public dosfstools
   (package
     (name "dosfstools")
-    (version "3.0.27")
+    (version "3.0.28")
     (source
      (origin
        (method url-fetch)
@@ -133,7 +133,7 @@ to recover data more efficiently by only reading the necessary blocks.")
                            name "-" version ".tar.xz"))
        (sha256
         (base32
-         "1a2qs5g2zqbk1gzaaf4v3fw3yny6jgbzddpgcamkp3fjifn8wxl5"))))
+         "1qkya6lald91c8nsf29jwnk0k5v42wlj24gacfdp3wpc8hq935gf"))))
     (build-system gnu-build-system)
     (arguments
      `(#:make-flags (list (string-append "PREFIX=" %output)

gnu/packages/dvtm.scm

@@ -0,0 +1,54 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2015 Leo Famulari <leo@famulari.name>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages dvtm)
+  #:use-module (guix build-system gnu)
+  #:use-module (guix download)
+  #:use-module (guix licenses)
+  #:use-module (guix packages)
+  #:use-module (gnu packages ncurses))
+
+(define-public dvtm
+  (package
+   (name "dvtm")
+   (version "0.14")
+   (source (origin
+            (method url-fetch)
+            (uri (string-append "http://www.brain-dump.org/projects/dvtm/dvtm-"
+                                 version ".tar.gz"))
+            (sha256
+             (base32 "0ykl8dz7ivjgdzhmhlgidnp2ffh5gxq9lbg276w7iid4z10v76wa"))))
+   (build-system gnu-build-system)
+   (arguments
+    `(#:make-flags (list "CC=gcc"
+                         (string-append "PREFIX=" (assoc-ref %outputs "out")))
+      #:phases (modify-phases %standard-phases
+                 (delete 'configure)
+                 (delete 'check))))  ; no test suite
+   (inputs `(("ncurses" ,ncurses)))
+   (synopsis "Tiling window management for the console")
+   (description "dvtm brings the concept of tiling window management,
+popularized by X11-window managers like dwm, to the console.  As a console
+window manager it tries to make it easy to work with multiple console based
+programs.")
+   (home-page "http://www.brain-dump.org/projects/dvtm/")
+
+   ;; "dvtm reuses some code of dwm and is released under the same MIT/X11
+   ;; license. The terminal emulation part is licensed under the ISC license."
+   ;; source: http://www.brain-dump.org/projects/dvtm/#license
+   (license (list expat isc))))

gnu/packages/ebook.scm

@@ -60,7 +60,7 @@
 (define-public calibre
   (package
     (name "calibre")
-    (version "2.29.0")
+    (version "2.41.0")
     (source
       (origin
         (method url-fetch)
@@ -69,7 +69,7 @@
                             version ".tar.xz"))
         (sha256
           (base32
-           "1n3cfnjnghhhsgzcbcvbr0gh191lhl6az09q1s68jhlcc2lski6l"))
+           "069fkcsx7kaazs7f095nkz4jw9jrm0k9zq16ayx41lxjbd1r97ik"))
         ;; Remove non-free or doubtful code, see
         ;; https://lists.gnu.org/archive/html/guix-devel/2015-02/msg00478.html
         (modules '((guix build utils)))

gnu/packages/emacs.scm

@@ -2,7 +2,7 @@
 ;;; Copyright © 2014 Taylan Ulrich Bayirli/Kammer <taylanbayirli@gmail.com>
 ;;; Copyright © 2013, 2014, 2015 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2014, 2015 Mark H Weaver <mhw@netris.org>
-;;; Copyright © 2014 Alex Kost <alezost@gmail.com>
+;;; Copyright © 2014, 2015 Alex Kost <alezost@gmail.com>
 ;;; Copyright © 2015 Federico Beffa <beffa@fbengineering.ch>
 ;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
 ;;;
@@ -38,7 +38,6 @@
   #:use-module (gnu packages texinfo)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages pkg-config)
-  #:use-module (gnu packages guile)
   #:use-module (gnu packages xorg)
   #:use-module (gnu packages lesstif)
   #:use-module (gnu packages image)
@@ -48,13 +47,13 @@
   #:use-module (gnu packages w3m)
   #:use-module (gnu packages wget)
   #:use-module (gnu packages autotools)
+  #:use-module (gnu packages base)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages xml)
   #:use-module (gnu packages glib)
   #:use-module (gnu packages acl)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages pdf)
-  #:use-module (gnu packages linux)               ;alsa
   #:use-module (gnu packages xiph)
   #:use-module (gnu packages mp3)
   #:use-module (guix utils)
@@ -110,6 +109,12 @@
     (native-inputs
      `(("pkg-config" ,pkg-config)
        ("texinfo" ,texinfo)))
+
+    (native-search-paths
+     (list (search-path-specification
+            (variable "INFOPATH")
+            (files '("share/info")))))
+
     (home-page "http://www.gnu.org/software/emacs/")
     (synopsis "The extensible, customizable, self-documenting text editor")
     (description
@@ -187,14 +192,14 @@ editor (without an X toolkit)" )
 (define-public geiser
   (package
     (name "geiser")
-    (version "0.7")
+    (version "0.8.1")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://savannah/geiser/" version
                                  "/geiser-" version ".tar.gz"))
              (sha256
               (base32
-               "0cp7r91ibw45yw9k3fz1s13y7ryfsxjgpk57qv37qsznb9lmqylx"))))
+               "163zh8qf1q8l485d94a51a9xixirj8r2xvrbgxyw06vkaqrz5qvc"))))
     (build-system gnu-build-system)
     (arguments
      '(#:phases (alist-cons-after
@@ -266,15 +271,16 @@ when typing parentheses directly or commenting out code line by line.")
 (define-public git-modes
   (package
     (name "git-modes")
-    (version "1.0.0")
+    (version "1.2.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
                     "https://github.com/magit/git-modes/archive/"
                     version ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "1biiss75bswx4alk85k3g9p0a3q3sc9i74h4mnrxc2rsk2iwhws0"))))
+                "09dv7ikbj2bi4y3lmvjfzqpdmx2f9bd4w7jkp10bkap62d05iqhk"))))
     (build-system gnu-build-system)
     (arguments
      `(#:modules ((guix build gnu-build-system)
@@ -290,7 +296,7 @@ when typing parentheses directly or commenting out code line by line.")
                           (string-append "LISPDIR="
                                          (assoc-ref %outputs "out")
                                          "/share/emacs/site-lisp"))
-       #:test-target "test"
+       #:tests? #f  ; no check target
        #:phases (modify-phases %standard-phases
                   (delete 'configure)
                   (add-after 'install 'emacs-autoloads
@@ -310,7 +316,7 @@ configuration files, such as .gitattributes, .gitignore, and .git/config.")
 (define-public magit
   (package
     (name "magit")
-    (version "1.4.1")
+    (version "2.3.0")
     (source (origin
              (method url-fetch)
              (uri (string-append
@@ -318,13 +324,12 @@ configuration files, such as .gitattributes, .gitignore, and .git/config.")
                    version "/" name "-" version ".tar.gz"))
              (sha256
               (base32
-               "0bbvz6cma5vj6qxx9v2m60zqkjwgwjrdf9kp04iacybvrcm8vcg7"))))
+               "0bi0vqp9802f00vnii3x80iqycji20bw4pjysy6al0d86mkggjx5"))))
     (build-system gnu-build-system)
     (native-inputs `(("texinfo" ,texinfo)
                      ("emacs" ,emacs-no-x)))
-    (inputs `(("git" ,git)
-              ("git:gui" ,git "gui")))
-    (propagated-inputs `(("git-modes" ,git-modes)))
+    (inputs `(("git" ,git)))
+    (propagated-inputs `(("dash" ,emacs-dash)))
     (arguments
      `(#:modules ((guix build gnu-build-system)
                   (guix build utils)
@@ -333,45 +338,27 @@ configuration files, such as .gitattributes, .gitignore, and .git/config.")
                            (guix build emacs-utils))
 
        #:test-target "test"
-       #:tests? #f                          ;'tests/magit-tests.el' is missing
+       #:tests? #f               ; tests are not included in the release
 
-       #:make-flags (list
-                     ;; Don't put .el files in a sub-directory.
-                     (string-append "lispdir=" (assoc-ref %outputs "out")
-                                    "/share/emacs/site-lisp"))
+       #:make-flags
+       (list (string-append "PREFIX=" %output)
+             ;; Don't put .el files in a sub-directory.
+             (string-append "lispdir=" %output "/share/emacs/site-lisp")
+             (string-append "DASH_DIR="
+                            (assoc-ref %build-inputs "dash")
+                            "/share/emacs/site-lisp/guix.d/dash-"
+                            ,(package-version emacs-dash)))
 
        #:phases
        (modify-phases %standard-phases
-         (replace
-          'configure
-          (lambda* (#:key outputs #:allow-other-keys)
-            (let ((out (assoc-ref outputs "out")))
-              (substitute* "Makefile"
-                (("/usr/local") out)
-                (("/etc") (string-append out "/etc"))))))
+         (delete 'configure)
          (add-before
           'build 'patch-exec-paths
           (lambda* (#:key inputs #:allow-other-keys)
-            (let ((git (assoc-ref inputs "git"))
-                  (git:gui (assoc-ref inputs "git:gui")))
-              (emacs-substitute-variables "magit.el"
-                ("magit-git-executable" (string-append git "/bin/git"))
-                ("magit-gitk-executable" (string-append git:gui
-                                                        "/bin/gitk"))))))
-         (add-before
-          'build 'augment-load-path
-          (lambda* (#:key inputs #:allow-other-keys)
-            ;; Allow git-commit-mode.el & co. to be found.
-            (let ((git-modes (assoc-ref inputs "git-modes")))
-              (setenv "EMACSLOADPATH"
-                      (string-append ":" git-modes "/share/emacs/site-lisp"))
-              #t)))
-         (add-after
-          'install 'post-install
-          (lambda* (#:key outputs #:allow-other-keys)
-            (emacs-generate-autoloads
-             ,name (string-append (assoc-ref outputs "out")
-                                  "/share/emacs/site-lisp/")))))))
+            (let ((git (assoc-ref inputs "git")))
+              (emacs-substitute-variables "lisp/magit-git.el"
+                ("magit-git-executable" (string-append git "/bin/git")))
+              #t))))))
     (home-page "http://magit.github.io/")
     (synopsis "Emacs interface for the Git version control system")
     (description
@@ -385,18 +372,22 @@ operations.")
 (define-public magit-svn
   (package
     (name "magit-svn")
-    (version "b69b79")
+    (version "2.1.1")
     (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (commit version)
-                    (url "https://github.com/magit/magit-svn.git")))
+              (method url-fetch)
+              (uri (string-append
+                    "https://github.com/magit/magit-svn/archive/"
+                    version ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "07xxszd12r38s46sz8fn2qz26b7s88i022cqp3gmkmmj3j57kqv6"))))
+                "04y88j7q9h8xjbx5dbick6n5nr1522sn9i1znp0qwk3vjb4b5mzz"))))
     (build-system trivial-build-system)
-    (inputs `(("emacs" ,emacs-no-x)
-              ("magit" ,magit)))
+    (native-inputs `(("emacs" ,emacs-no-x)
+                     ("tar" ,tar)
+                     ("gzip" ,gzip)))
+    (propagated-inputs `(("dash" ,emacs-dash)
+                         ("magit" ,magit)))
     (arguments
      `(#:modules ((guix build utils)
                   (guix build emacs-utils))
@@ -406,23 +397,30 @@ operations.")
          (use-modules (guix build utils)
                       (guix build emacs-utils))
 
-         (let* ((emacs    (string-append (assoc-ref %build-inputs "emacs")
+         (let* ((tar      (string-append (assoc-ref %build-inputs "tar")
+                                         "/bin/tar"))
+                (PATH     (string-append (assoc-ref %build-inputs "gzip")
+                                         "/bin"))
+                (emacs    (string-append (assoc-ref %build-inputs "emacs")
                                          "/bin/emacs"))
                 (magit    (string-append (assoc-ref %build-inputs "magit")
                                          "/share/emacs/site-lisp"))
-                (commit   (string-append (assoc-ref %build-inputs "git-modes")
-                                         "/share/emacs/site-lisp"))
+                (dash     (string-append (assoc-ref %build-inputs "dash")
+                                         "/share/emacs/site-lisp/guix.d/dash-"
+                                         ,(package-version emacs-dash)))
                 (source   (assoc-ref %build-inputs "source"))
                 (lisp-dir (string-append %output "/share/emacs/site-lisp")))
-           (mkdir-p lisp-dir)
-           (copy-file (string-append source "/magit-svn.el")
-                      (string-append lisp-dir "/magit-svn.el"))
+           (setenv "PATH" PATH)
+           (system* tar "xvf" source)
+
+           (install-file (string-append ,name "-" ,version "/magit-svn.el")
+                         lisp-dir)
 
            (with-directory-excursion lisp-dir
              (parameterize ((%emacs emacs))
                (emacs-generate-autoloads ,name lisp-dir)
                (setenv "EMACSLOADPATH"
-                       (string-append ":" magit ":" commit))
+                       (string-append ":" magit ":" dash))
                (emacs-batch-eval '(byte-compile-file "magit-svn.el"))))))))
     (home-page "https://github.com/magit/magit-svn")
     (synopsis "Git-SVN extension to Magit")
@@ -470,18 +468,14 @@ support for Git-SVN.")
                          out "/share/doc/haskell-mode-" ,version))
                    (info (string-append out "/share/info")))
               (define (copy-to-dir dir files)
-                (mkdir-p dir)
-                (for-each
-                 (lambda (f)
-                   (copy-file f (string-append dir "/" (basename f))))
-                 files))
+                (for-each (lambda (f)
+                            (install-file f dir))
+                          files))
 
               (with-directory-excursion "doc"
                 (unless (zero? (system* "makeinfo" "haskell-mode.texi"))
                   (error "makeinfo failed"))
-                (mkdir-p info)
-                (copy-file "haskell-mode.info"
-                           (string-append info "/haskell-mode.info")))
+                (install-file "haskell-mode.info" info))
                (copy-to-dir doc '("CONTRIBUTING.md" "NEWS" "README.md"))
                (copy-to-dir el-dir (find-files "." "\\.elc?"))
                ;; these are now distributed with emacs
@@ -495,6 +489,82 @@ support for Git-SVN.")
 programs.")
     (license license:gpl3+)))
 
+(define-public let-alist
+  (package
+    (name "emacs-let-alist")
+    (version "1.0.4")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "http://elpa.gnu.org/packages/let-alist-"
+                                  version ".el"))
+              (sha256
+               (base32
+                "07312bvvyz86lf64vdkxg2l1wgfjl25ljdjwlf1bdzj01c4hm88x"))))
+    (build-system trivial-build-system)
+    (arguments
+     `(#:modules ((guix build utils)
+                  (guix build emacs-utils))
+
+       #:builder (begin
+                   (use-modules (guix build emacs-utils)
+                                (guix build utils))
+
+                   (let* ((out     (assoc-ref %outputs "out"))
+                          (lispdir (string-append out
+                                                  "/share/emacs/site-lisp/"
+                                                  "guix.d/let-alist-"
+                                                  ,version))
+                          (emacs   (assoc-ref %build-inputs "emacs")))
+
+                     (mkdir-p lispdir)
+                     (copy-file (assoc-ref %build-inputs "source")
+                                (string-append lispdir "/let-alist.el"))
+
+                     (setenv "PATH" (string-append emacs "/bin"))
+                     (emacs-byte-compile-directory lispdir)
+                     #t))))
+    (native-inputs `(("emacs" ,emacs-no-x)))
+    (home-page "http://elpa.gnu.org/packages/let-alist.html")
+    (synopsis "Easily let-bind values of an assoc-list by their names")
+    (description
+     "This package offers a single Emacs Lisp macro, @code{let-alist}.  This
+macro takes a first argument, whose value must be an alist (association list),
+and a body.
+
+The macro expands to a let form containing the body, where each dotted symbol
+inside body is let-bound to their cdrs in the alist.  Only those present in
+the body are let-bound and this search is done at compile time.")
+    (license license:gpl3+)))
+
+(define-public flycheck
+  (package
+    (name "emacs-flycheck")
+    (version "0.23")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://github.com/flycheck/flycheck/releases/download/"
+                    version "/flycheck-" version ".tar"))
+              (sha256
+               (base32
+                "1n2cifzsl5dbv42l82bi3y1vk6q33msi8dd4bj7b9nvnl9jfjj5b"))))
+    (build-system emacs-build-system)
+    (propagated-inputs
+     `(("emacs-dash" ,emacs-dash)
+       ("emacs-let-alist" ,let-alist)))
+    (home-page "https://www.flycheck.org")
+    (synopsis "On-the-fly syntax checking")
+    (description
+     "This package provides on-the-fly syntax checking for GNU Emacs.  It is a
+replacement for the older Flymake extension which is part of GNU Emacs, with
+many improvements and additional features.
+
+Flycheck provides fully-automatic, fail-safe, on-the-fly background syntax
+checking for over 30 programming and markup languages with more than 70
+different tools.  It highlights errors and warnings inline in the buffer, and
+provides an optional IDE-like error list.")
+    (license license:gpl3+)))                     ;+GFDLv1.3+ for the manual
+
 
 ;;;
 ;;; Web browsing.
@@ -884,11 +954,9 @@ single buffer.")
           (lambda* (#:key outputs #:allow-other-keys)
             (let ((target (string-append (assoc-ref outputs "out")
                                          "/share/emacs/site-lisp/")))
-              (mkdir-p target)
-              (for-each
-               (lambda (file)
-                 (copy-file file (string-append target (basename file))))
-               (find-files "../lisp" "^(pdf|tab).*\\.elc?"))
+              (for-each (lambda (file)
+                          (install-file file target))
+                        (find-files "../lisp" "^(pdf|tab).*\\.elc?"))
               (emacs-byte-compile-directory target)
               (emacs-generate-autoloads "pdf-tools" target)))))))
     (native-inputs `(("autoconf" ,autoconf)
@@ -908,3 +976,199 @@ e.g. ghostscript and stored in the file-system, but rather created on-demand
 and stored in memory.")
     (home-page "https://github.com/politza/pdf-tools")
     (license license:gpl3+)))
+
+(define-public emacs-dash
+  (package
+    (name "emacs-dash")
+    (version "2.11.0")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://github.com/magnars/dash.el/archive/"
+                    version ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1piwcwilkxcbjxx832mhb7q3pz1fgwp203r581bpqcw6kd5x726q"))))
+    (build-system emacs-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'install 'check
+                     (lambda _
+                       (zero? (system* "./run-tests.sh")))))))
+    (home-page "https://github.com/magnars/dash.el")
+    (synopsis "Modern list library for Emacs")
+    (description "This package provides a modern list API library for Emacs.")
+    (license license:gpl3+)))
+
+(define-public emacs-s
+  (package
+    (name "emacs-s")
+    (version "1.9.0")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://github.com/magnars/s.el/archive/"
+                    version ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1gah2k577gvnmxlpw7zrz0jr571vghzhdv2hbgchlgah07czd091"))))
+    (build-system emacs-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'install 'check
+                     (lambda _
+                       (zero? (system* "./run-tests.sh")))))))
+    (home-page "https://github.com/magnars/s.el")
+    (synopsis "Emacs string manipulation library.")
+    (description "This package provides an Emacs library for manipulating
+strings.")
+    (license license:gpl3+)))
+
+(define-public emacs-f
+  (package
+    (name "emacs-f")
+    (version "0.17.2")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://github.com/rejeep/f.el/archive/v"
+                    version ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1n5gcldf43wmkr7jxgs519v21zavwr0yn8048iv6gvgfwicnyjlx"))))
+    (build-system emacs-build-system)
+    (propagated-inputs
+     `(("emacs-s" ,emacs-s)
+       ("emacs-dash" ,emacs-dash)))
+    (home-page "http://github.com/rejeep/f.el")
+    (synopsis "Emacs API for working with files and directories")
+    (description "This package provides an Emacs library for working with
+files and directories.")
+    (license license:gpl3+)))
+
+(define-public emacs-ob-ipython
+  (package
+    (name "emacs-ob-ipython")
+    (version "20150704.8807064693")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (commit "8807064693")
+                    (url "https://github.com/gregsexton/ob-ipython.git")))
+              (sha256
+               (base32
+                "1scf25snbds9ymagpny30ijbsg479r3nm0ih01dy4m9d0g7qryb7"))))
+    (build-system emacs-build-system)
+    (propagated-inputs
+     `(("emacs-f" ,emacs-f)))
+    (home-page "http://www.gregsexton.org")
+    (synopsis "Org-Babel functions for IPython evaluation")
+    (description "This package adds support to Org-Babel for evaluating Python
+source code using IPython.")
+    (license license:gpl3+)))
+
+(define-public emacs-debbugs
+  (package
+    (name "emacs-debbugs")
+    (version "0.7")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "http://elpa.gnu.org/packages/debbugs-"
+                                  version ".tar"))
+              (sha256
+               (base32
+                "0pbglx3paa8icazgxlg4jf40wl8war63y9j2jmbb7gbd1xp95v72"))))
+    (build-system emacs-build-system)
+    (home-page "http://elpa.gnu.org/packages/debbugs.html")
+    (synopsis "Access the Debbugs bug tracker in Emacs")
+    (description
+     "This package lets you access the @uref{http://bugs.gnu.org,GNU Bug
+Tracker} from within Emacs.
+
+For instance, it defines the command @code{M-x debbugs-gnu} for listing bugs,
+and the command @code{M-x debbugs-gnu-search} for bug searching.  If you
+prefer the listing of bugs as TODO items of @code{org-mode}, you could use
+@code{M-x debbugs-org} and related commands.
+
+A minor mode @code{debbugs-browse-mode} let you browse URLs to the GNU Bug
+Tracker as well as bug identifiers prepared for @code{bug-reference-mode}.")
+    (license license:gpl3+)))
+
+(define-public emacs-deferred
+  (package
+    (name "emacs-deferred")
+    (version "0.3.2")
+    (home-page "https://github.com/kiwanami/emacs-deferred")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url home-page)
+                    (commit (string-append "v" version))))
+              (sha256
+               (base32
+                "0059jy01ni5irpgrj9fa81ayd9j25nvmjjm79ms3210ysx4pgqdr"))
+              (file-name (string-append name "-" version))))
+    (build-system emacs-build-system)
+    ;; FIXME: Would need 'el-expectations' to actually run tests.
+    (synopsis "Simple asynchronous functions for Emacs Lisp")
+    (description
+     "The @code{deferred.el} library provides support for asynchronous tasks.
+The API is almost the same as that of
+@uref{https://github.com/cho45/jsdeferred, JSDeferred}, a JavaScript library
+for asynchronous tasks.")
+    (license license:gpl3+)))
+
+(define-public butler
+  (package
+    (name "emacs-butler")
+    (version "0.2.4")
+    (home-page "https://github.com/AshtonKem/Butler")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url home-page)
+                    (commit version)))
+              (sha256
+               (base32
+                "1pii9dw4skq7nr4na6qxqasl36av8cwjp71bf1fgppqpcd9z8skj"))
+              (file-name (string-append name "-" version))))
+    (build-system emacs-build-system)
+    (propagated-inputs
+     `(("emacs-deferred" ,emacs-deferred)))
+    (synopsis "Emacs client for Jenkins")
+    (description
+     "Butler provides an interface to connect to Jenkins continuous
+integration servers.  Users can specify a list of server in the
+@code{butler-server-list} variable and then use @code{M-x butler-status} to
+view the build status of those servers' build jobs, and possibly to trigger
+build jobs.")
+    (license license:gpl3+)))
+
+(define-public typo
+  (package
+    (name "emacs-typo")
+    (version "1.1")
+    (home-page "https://github.com/jorgenschaefer/typoel")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url home-page)
+                    (commit (string-append "v" version))))
+              (sha256
+               (base32
+                "1jhd4grch5iz12gyxwfbsgh4dmz5hj4bg4gnvphccg8dsnni05k2"))
+              (file-name (string-append name "-" version))))
+    (build-system emacs-build-system)
+    (synopsis "Minor mode for typographic editing")
+    (description
+     "This package provides two Emacs modes, @code{typo-mode} and
+@code{typo-global-mode}.  These modes automatically insert Unicode characters
+for quotation marks, dashes, and ellipses.  For example, typing @kbd{\"}
+automatically inserts a Unicode opening or closing quotation mark, depending
+on context.")
+    (license license:gpl3+)))

gnu/packages/engineering.scm

@@ -1,5 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015 Federico Beffa <beffa@fbengineering.ch>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -19,17 +20,24 @@
 (define-module (gnu packages engineering)
   #:use-module (guix packages)
   #:use-module (guix download)
+  #:use-module (guix gexp)
   #:use-module (guix git-download)
+  #:use-module (guix monads)
+  #:use-module (guix store)
   #:use-module (guix utils)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix build-system gnu)
   #:use-module (gnu packages)
+  #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)
   #:use-module (gnu packages bison)
   #:use-module (gnu packages boost)
+  #:use-module (gnu packages compression)
   #:use-module (gnu packages flex)
   #:use-module (gnu packages fontutils)
   #:use-module (gnu packages gd)
+  #:use-module (gnu packages gettext)
+  #:use-module (gnu packages ghostscript)
   #:use-module (gnu packages gl)
   #:use-module (gnu packages glib)
   #:use-module (gnu packages gnome)
@@ -41,6 +49,7 @@
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages qt)
   #:use-module (gnu packages tcl)
+  #:use-module (gnu packages texlive)
   #:use-module (srfi srfi-1))
 
 (define-public librecad
@@ -196,3 +205,219 @@ layouts.  It features a rats-nest implementation, schematic/netlist import,
 and design rule checking.  It also includes an autorouter and a trace
 optimizer; and it can produce photorealistic and design review images.")
     (license license:gpl2+)))
+
+(define* (broken-tarball-fetch url hash-algo hash
+                               #:optional name
+                               #:key (system (%current-system))
+                               (guile (default-guile)))
+  (mlet %store-monad ((drv (url-fetch url hash-algo hash
+                                      (string-append "tarbomb-" name)
+                                      #:system system
+                                      #:guile guile)))
+    ;; Take the tar bomb, and simply unpack it as a directory.
+    (gexp->derivation name
+                      #~(begin
+                          (mkdir #$output)
+                          (setenv "PATH"
+                                  (string-append #$gzip "/bin"))
+                          (chdir #$output)
+                          (zero? (system* (string-append #$tar "/bin/tar")
+                                          "xf" #$drv))))))
+
+
+(define-public fastcap
+  (package
+    (name "fastcap")
+    (version "2.0-18Sep92")
+    (source (origin
+              (method broken-tarball-fetch)
+              (file-name (string-append name "-" version ".tar.gz"))
+              (uri (string-append "http://www.rle.mit.edu/cpg/codes/"
+                                  name "-" version ".tgz"))
+              (sha256
+               (base32
+                "0x37vfp6k0d2z3gnig0hbicvi0jp8v267xjnn3z8jdllpiaa6p3k"))
+              (snippet
+               ;; Remove a non-free file.
+               '(delete-file "doc/psfig.sty"))
+              (modules '((guix build utils)
+                         (guix build download)
+                         (guix ftp-client)))
+              (patches (list (search-patch "fastcap-mulSetup.patch")
+                             (search-patch "fastcap-mulGlobal.patch")))))
+    (build-system gnu-build-system)
+    (native-inputs
+     `(("texlive" ,texlive)
+       ("ghostscript" ,ghostscript)))
+    (arguments
+     `(#:make-flags '("CC=gcc" "RM=rm" "SHELL=sh" "all")
+       #:parallel-build? #f
+       #:tests? #f ;; no tests-suite
+       #:modules ((srfi srfi-1)
+                  ,@%gnu-build-system-modules)
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'build 'make-doc
+                    (lambda _
+                      (zero? (system* "make" "CC=gcc" "RM=rm" "SHELL=sh"
+                                      "manual"))))
+         (add-before 'make-doc 'fix-doc
+                     (lambda _
+                       (substitute* "doc/Makefile" (("/bin/rm") (which "rm")))
+                       (substitute* (find-files "doc" "\\.tex")
+                         (("\\\\special\\{psfile=([^,]*),.*scale=([#0-9.]*).*\\}"
+                           all file scale)
+                          (string-append "\\includegraphics[scale=" scale "]{"
+                                         file "}"))
+                         (("\\\\psfig\\{figure=([^,]*),.*width=([#0-9.]*in).*\\}"
+                           all file width)
+                          (string-append "\\includegraphics[width=" width "]{"
+                                         file "}"))
+                         (("\\\\psfig\\{figure=([^,]*),.*height=([#0-9.]*in).*\\}"
+                           all file height)
+                          (string-append "\\includegraphics[height=" height "]{"
+                                         file "}"))
+                         (("\\\\psfig\\{figure=([^,]*)\\}" all file)
+                          (string-append "\\includegraphics{" file "}")))
+                       (substitute* '("doc/mtt.tex" "doc/tcad.tex" "doc/ug.tex")
+                         (("^\\\\documentstyle\\[(.*)\\]\\{(.*)\\}"
+                           all options class)
+                          (string-append "\\documentclass[" options "]{"
+                                         class "}\n"
+                                         "\\usepackage{graphicx}\n"
+                                         "\\usepackage{robinspace}"))
+                         (("\\\\setlength\\{\\\\footheight\\}\\{.*\\}" all)
+                          (string-append "%" all))
+                         (("\\\\setstretch\\{.*\\}" all)
+                          (string-append "%" all)))
+                       #t))
+         (delete 'configure)
+         (add-before 'install 'clean-bin
+                     (lambda _
+                       (delete-file (string-append (getcwd) "/bin/README"))
+                       #t))
+         (add-before 'install 'make-pdf
+                     (lambda _
+                       (with-directory-excursion "doc"
+                         (and
+                          (every (lambda (file)
+                                   (zero? (system* "dvips" file "-o")))
+                                 (find-files "." "\\.dvi"))
+                          (every (lambda (file)
+                                   (zero? (system* "ps2pdf" file)))
+                                 '("mtt.ps" "ug.ps" "tcad.ps"))
+                          (zero? (system* "make" "clean"))))))
+         (replace 'install
+                  (lambda* (#:key outputs #:allow-other-keys)
+                    (let* ((out (assoc-ref outputs "out"))
+                           (data (string-append out "/share"))
+                           (bin (string-append out "/bin"))
+                           (doc (string-append data "/doc/" ,name "-" ,version))
+                           (examples (string-append doc "/examples")))
+                      (with-directory-excursion "bin"
+                        (for-each (lambda (f)
+                                    (install-file f bin))
+                                  (find-files "." ".*")))
+                      (copy-recursively "doc" doc)
+                      (copy-recursively "examples" examples)
+                      #t))))))
+    (home-page "http://www.rle.mit.edu/cpg/research_codes.htm")
+    (synopsis "Multipole-accelerated capacitance extraction program")
+    (description
+     "Fastcap is a capacitance extraction program based on a
+multipole-accelerated algorithm.")
+    (license (license:non-copyleft #f "See fastcap.c."))))
+
+(define-public fasthenry
+  (package
+    (name "fasthenry")
+    (version "3.0-12Nov96")
+    (source (origin
+              (method url-fetch)
+              (file-name (string-append name "-" version ".tar.gz"))
+              (uri (string-append
+                    "http://www.rle.mit.edu/cpg/codes/" name
+                    "-" version ".tar.z"))
+              (sha256
+               (base32 "1a06xyyd40zhknrkz17xppl2zd5ig4w9g1grc8qrs0zqqcl5hpzi"))
+              (patches (list (search-patch "fasthenry-spAllocate.patch")
+                             (search-patch "fasthenry-spBuild.patch")
+                             (search-patch "fasthenry-spUtils.patch")
+                             (search-patch "fasthenry-spSolve.patch")
+                             (search-patch "fasthenry-spFactor.patch")))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:make-flags '("CC=gcc" "RM=rm" "SHELL=sh" "all")
+       #:parallel-build? #f
+       #:tests? #f ;; no tests-suite
+       #:modules ((srfi srfi-1)
+                  ,@%gnu-build-system-modules)
+       #:phases
+       (modify-phases %standard-phases
+         (delete 'configure)
+         (replace 'install
+                  (lambda* (#:key outputs #:allow-other-keys)
+                    (let* ((out (assoc-ref outputs "out"))
+                           (data (string-append out "/share"))
+                           (bin (string-append out "/bin"))
+                           (doc (string-append data "/doc/" ,name "-" ,version))
+                           (examples (string-append doc "/examples")))
+                      (with-directory-excursion "bin"
+                        (for-each (lambda (f)
+                                    (install-file f bin))
+                                  (find-files "." ".*")))
+                      (copy-recursively "doc" doc)
+                      (copy-recursively "examples" examples)
+                      #t))))))
+    (home-page "http://www.rle.mit.edu/cpg/research_codes.htm")
+    (synopsis "Multipole-accelerated inductance analysis program")
+    (description
+     "Fasthenry is an inductance extraction program based on a
+multipole-accelerated algorithm.")
+    (license (license:non-copyleft #f "See induct.c."))))
+
+(define-public gerbv
+  (package
+    (name "gerbv")
+    (version "2.6.1")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://sourceforge/gerbv/gerbv/gerbv-"
+                                  version "/gerbv-" version ".tar.gz"))
+              (sha256
+               (base32
+                "0v6ry0mxi5qym4z0y0lpblxsw9dfjpgxs4c4v2ngg7yw4b3a59ks"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'autoconf
+          (lambda _
+            ;; Build rules contain references to Russian translation, but the
+            ;; needed files are missing; see
+            ;; http://sourceforge.net/p/gerbv/bugs/174/
+            (delete-file "po/LINGUAS")
+            (substitute* "man/Makefile.am"
+              (("PO_FILES= gerbv.ru.1.in.po") "")
+              (("man_MANS = gerbv.1 gerbv.ru.1") "man_MANS = gerbv.1"))
+            (zero? (system* "autoreconf" "-vfi")))))))
+    (native-inputs
+     `(("autoconf" ,autoconf)
+       ("automake" ,automake)
+       ("libtool" ,libtool)
+       ("gettext" ,gnu-gettext)
+       ("po4a" ,po4a)
+       ("pkg-config" ,pkg-config)))
+    (inputs
+     `(("cairo" ,cairo)
+       ("gtk" ,gtk+-2)
+       ("desktop-file-utils" ,desktop-file-utils)))
+    (home-page "http://gerbv.geda-project.org/")
+    (synopsis "Gerber file viewer")
+    (description
+     "Gerbv is a viewer for files in the Gerber format (RS-274X only), which
+is commonly used to represent printed circuit board (PCB) layouts.  Gerbv lets
+you load several files on top of each other, do measurements on the displayed
+image, etc.  Besides viewing Gerbers, you may also view Excellon drill files
+as well as pick-place files.")
+    (license license:gpl2+)))

gnu/packages/enlightenment.scm

@@ -1,5 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2015 Tomáš Čech <sleep_walker@suse.cz>
+;;; Copyright © 2015 Daniel Pimentel <d4n1@member.fsf.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -50,14 +51,15 @@
 (define-public efl
   (package
     (name "efl")
-    (version "1.14.2")
+    (version "1.15.2")
     (source (origin
               (method url-fetch)
               (uri (string-append
                     "https://download.enlightenment.org/rel/libs/efl/efl-"
                     version ".tar.xz"))
               (sha256
-               (base32 "0kg51v63ljq1z4dj65aiyxaqhq54gkl4hx53ifwbci6ihammandr"))))
+               (base32
+                "1962wqx7gdnpzvnkbighyn4hj5vw8l4c1d7xl5zilqjlyhcqywyx"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
@@ -126,20 +128,21 @@
 for Enlightenment.  Libraries covers data serialization, wide support for
 graphics rendering, UI layout and themes, interaction with OS, access to
 removable devices or support for multimedia.")
-    (license (list license:bsd-2 license:lgpl2.1 license:zlib)))) ; different parts under different licenses
+    ;; Different parts are under different licenses.
+    (license (list license:bsd-2 license:lgpl2.1 license:zlib))))
 
 (define-public elementary
   (package
     (name "elementary")
-    (version "1.14.2")
+    (version "1.15.2")
     (source (origin
               (method url-fetch)
               (uri
-               (string-append
-                "https://download.enlightenment.org/rel/libs/elementary/elementary-"
-                version ".tar.xz"))
+               (string-append "https://download.enlightenment.org/rel/libs/"
+                              "elementary/elementary-" version ".tar.xz"))
               (sha256
-               (base32 "1ck1jm9dfx2l72nklndqjfsxjqb0024b88naskld1dk9b8drs76b"))))
+               (base32
+                "0gqg98bglnl2jggdzxzrh9r7bv32i4sahspms0bihq8b45rk0g2j"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
@@ -156,7 +159,7 @@ full capabilities of EFL.")
 (define-public evas-generic-loaders
   (package
     (name "evas-generic-loaders")
-    (version "1.14.0")
+    (version "1.15.0")
     (source (origin
               (method url-fetch)
               (uri
@@ -165,7 +168,8 @@ full capabilities of EFL.")
                 "evas_generic_loaders/evas_generic_loaders-"
                 version ".tar.xz"))
               (sha256
-               (base32 "18b6xmbf81bly4mlwlzwr17g2m8dzznbhsdjk6pbb3nw4wn3y88l"))))
+               (base32
+                "0zzx06j20x580xqnnsxp7gb7rv279zcgvdxfbhs905af9m6rwlqy"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
@@ -187,15 +191,16 @@ files in Evas (EFL canvas library).")
 (define-public emotion-generic-players
   (package
     (name "emotion-generic-players")
-    (version "1.14.0")
+    (version "1.15.0")
     (source (origin
               (method url-fetch)
               (uri
-               (string-append
-                "https://download.enlightenment.org/rel/libs/emotion_generic_players/emotion_generic_players-"
-                version ".tar.xz"))
+               (string-append "https://download.enlightenment.org/rel/libs/"
+                              "emotion_generic_players/emotion_generic_players"
+                              "-" version ".tar.xz"))
               (sha256
-               (base32 "0685jzag98ykknycfdqn70zif3fmcfi6m8k9yp6d79r1h8gc49n4"))))
+               (base32
+                "0pszwmcygxnv1sfx0m79md2jmi4sng8mdb1xcr6h2z5c8685wvcz"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
@@ -213,15 +218,15 @@ The only supported now is VLC.")
 (define-public terminology
   (package
     (name "terminology")
-    (version "0.8.0")
+    (version "0.9.1")
     (source (origin
               (method url-fetch)
               (uri
-               (string-append
-                "https://download.enlightenment.org/rel/apps/terminology/terminology-"
-                version ".tar.gz"))
+               (string-append "https://download.enlightenment.org/rel/apps/"
+                              "terminology/terminology-" version ".tar.xz"))
               (sha256
-               (base32 "0a767ixackzmhb2awrhjy7q6vsivsd54wc434i617xiw095x843s"))))
+               (base32
+                "1kwv9vkhngdm5v38q93xpcykghnyawhjjcb5bgy0p89gpbk7mvpc"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
@@ -237,18 +242,43 @@ URL and local path detection, themes, popup based content viewer for non-text
 contents and more.")
     (license license:bsd-2)))
 
-(define-public enlightenment
+(define-public rage
   (package
-    (name "enlightenment")
-    (version "0.19.5")
+    (name "rage")
+    (version "0.1.4")
     (source (origin
               (method url-fetch)
               (uri
                (string-append
-                "https://download.enlightenment.org/rel/apps/enlightenment/enlightenment-"
-                version ".tar.xz"))
+                "https://download.enlightenment.org/rel/apps/rage/rage-"
+                version ".tar.gz"))
               (sha256
-               (base32 "0j66x7x76fbgqfw6fi77v8qy50slw3jnsq3vvs82rrfvniabm8wc"))))
+               (base32 "10j3n8crk16jzqz2hn5djx6vms5f6x83qyiaphhqx94h9dgv2mgg"))))
+    (build-system gnu-build-system)
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (inputs
+     `(("efl" ,efl)
+       ("elementary" ,elementary)))
+    (home-page "https://www.enlightenment.org/about-rage")
+    (synopsis "Video and audio player based on EFL")
+    (description
+     "Rage is a video and audio player written with Enlightenment Foundation
+Libraries with some extra bells and whistles.")
+    (license license:bsd-2)))
+
+(define-public enlightenment
+  (package
+    (name "enlightenment")
+    (version "0.19.12")
+    (source (origin
+              (method url-fetch)
+              (uri
+               (string-append "https://download.enlightenment.org/rel/apps/"
+                              name "/" name "-" version ".tar.xz"))
+              (sha256
+               (base32 
+                 "098bdx9qmv1yqqwfydrzs7fvbnhsf3vaib9pmqsyg4ihgqrkrwjm"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))

gnu/packages/feh.scm

@@ -29,7 +29,7 @@
 (define-public feh
   (package
     (name "feh")
-    (version "2.13")
+    (version "2.14")
     (home-page "https://feh.finalrewind.org/")
     (source (origin
               (method url-fetch)
@@ -37,7 +37,7 @@
                                   name "-" version ".tar.bz2"))
               (sha256
                (base32
-                "06fa9zh1zpi63l90kw3l9a0sfavf424j7ksi396ifg9669gx35gn"))))
+                "0j5wxpqccnd0hl74z2vwv25n7qnik1n2mcm2jn0c0z7cjn4wsa9q"))))
     (build-system gnu-build-system)
     (arguments
       '(#:phases (alist-delete 'configure %standard-phases)

gnu/packages/figlet.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2012 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2015 Steve Sprang <scs@stevesprang.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -16,31 +16,31 @@
 ;;; You should have received a copy of the GNU General Public License
 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
-(define-module (gnu packages gdbm)
-  #:use-module (guix licenses)
+(define-module (gnu packages figlet)
+  #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module (guix download)
   #:use-module (guix build-system gnu))
 
-(define-public gdbm
+(define-public figlet
   (package
-    (name "gdbm")
-    (version "1.11")
+    (name "figlet")
+    (version "2.2.5")
     (source
      (origin
-      (method url-fetch)
-      (uri (string-append "mirror://gnu/gdbm/gdbm-"
-                          version ".tar.gz"))
-      (sha256
-       (base32
-        "1hz3jgh3pd4qzp6jy0l8pd8x01g9abw7csnrlnj1a2sxy122z4cd"))))
-    (arguments `(#:configure-flags '("--enable-libgdbm-compat")))
+       (method url-fetch)
+       (uri (string-append "ftp://ftp.figlet.org/pub/figlet/program"
+                           "/unix/figlet-" version ".tar.gz"))
+       (sha256
+        (base32 "0za1ax15x7myjl8jz271ybly8ln9kb9zhm1gf6rdlxzhs07w925z"))))
     (build-system gnu-build-system)
-    (home-page "http://www.gnu.org/software/gdbm/")
-    (synopsis
-     "Hash library of database functions compatible with traditional dbm")
-    (description
-     "GDBM is a library for manipulating hashed databases.  It is used to
-store key/value pairs in a file in a manner similar to the Unix dbm library
-and provides interfaces to the traditional file format.")
-    (license gpl3+)))
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases (delete 'configure))
+       #:make-flags
+       (list (string-append "prefix=" %output))))
+    (home-page "http://www.figlet.org/")
+    (synopsis "Make large letterforms out of ordinary screen characters")
+    (description "FIGlet is a program for making large ASCII art letterforms
+out of ordinary screen characters.")
+    (license license:bsd-3)))

gnu/packages/finance.scm

@@ -0,0 +1,82 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages finance)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix packages)
+ #:use-module (guix download)
+ #:use-module (guix build utils)
+ #:use-module (guix build-system gnu)
+ #:use-module (gnu packages boost)
+ #:use-module (gnu packages databases)
+ #:use-module (gnu packages linux)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages protobuf)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages qt)
+ #:use-module (gnu packages tls)
+ #:use-module (gnu packages upnp))
+
+(define-public bitcoin-core
+  (package
+    (name "bitcoin-core")
+    (version "0.11.0")
+    (source (origin
+             (method url-fetch)
+             (uri
+              (string-append "https://bitcoin.org/bin/bitcoin-core-"
+                             version "/bitcoin-"
+                             version ".tar.gz"))
+             (sha256
+              (base32
+               "17yh6lq13xzzi5v2i48qaxiqm40x3hrj4gwyamkib9yzmmb1gfji"))))
+    (build-system gnu-build-system)
+    (native-inputs
+     `(("pkg-config" ,pkg-config)
+       ("python" ,python-wrapper) ; for the tests
+       ("util-linux" ,util-linux))) ; provides the hexdump command for tests
+    (inputs
+     `(("bdb" ,bdb)
+       ("boost" ,boost)
+       ("miniupnpc" ,miniupnpc)
+       ("openssl" ,openssl)
+       ("protobuf" ,protobuf)
+       ("qt" ,qt)))
+    (arguments
+     `(#:configure-flags
+        (list
+          ;; We use a bdb version newer than 4.8.
+          "--with-incompatible-bdb"
+          ;; Boost is not found unless specified manually.
+          (string-append "--with-boost="
+                         (assoc-ref %build-inputs "boost")))
+       #:phases
+        (modify-phases %standard-phases
+          (add-before 'check 'set-home
+           (lambda _
+            (setenv "HOME" (getenv "TMPDIR"))))))) ; Tests write to $HOME.
+    (home-page "https://bitcoin.org/en/")
+    (synopsis "Bitcoin peer-to-peer client")
+    (description
+     "Bitcoin is a digital currency that enables instant payments to anyone
+anywhere in the world.  It uses peer-to-peer technology to operate without
+central authority: managing transactions and issuing money are carried out
+collectively by the network.  Bitcoin Core is the reference implementation
+of the bitcoin protocol.  This package provides the Bitcoin Core command
+line client and a client based on Qt.")
+    (license license:expat)))

gnu/packages/firmware.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2014, 2015 Ludovic Courtès <ludo@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -29,7 +29,7 @@
 (define-public ath9k-htc-firmware
   (package
     (name "ath9k-htc-firmware")
-    (version "1.3.2")
+    (version "1.4.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -37,7 +37,7 @@
                     (commit version)))
               (sha256
                (base32
-                "0dgqfp4cbky79vzjrdy3j462l8figymzrk2v0jalmmz3lkxw88ww"))
+                "16jbj8avg5jkgvq5lxm0hdxxn4c3zn7fx8b4nxllvr024apk9w23"))
               (patches (list (search-patch "ath9k-htc-firmware-objcopy.patch")))))
     (build-system gnu-build-system)
     (arguments

gnu/packages/fish.scm

@@ -20,6 +20,7 @@
   #:use-module (guix licenses)
   #:use-module (gnu packages doxygen)
   #:use-module (gnu packages ncurses)
+  #:use-module (gnu packages python)
   #:use-module (guix packages)
   #:use-module (guix download)
   #:use-module (guix utils)
@@ -28,14 +29,14 @@
 (define-public fish
   (package
     (name "fish")
-    (version "2.1.2")
+    (version "2.2.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "http://fishshell.com/files/"
                                   version "/fish-" version ".tar.gz"))
               (sha256
                (base32
-                "1pgnz5lapm4qk48a13k9698jaswybzlbz2nyc621d852ldf0vhn6"))
+                "0ympqz7llmf0hafxwglykplw6j5cz82yhlrw50lw4bnf2kykjqx7"))
               (modules '((guix build utils)))
               ;; Don't try to install /etc/fish/config.fish.
               (snippet
@@ -45,7 +46,8 @@
     (native-inputs
      `(("doxygen" ,doxygen)))
     (inputs
-     `(("ncurses" ,ncurses)))
+     `(("ncurses" ,ncurses)
+       ("python" ,python-wrapper)))   ;for fish_config and manpage completions
     (arguments
      '(#:tests? #f ; no check target
        #:configure-flags '("--sysconfdir=/etc")))

gnu/packages/fltk.scm

@@ -1,6 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2014 John Darrington <jmd@gnu.org>
 ;;; Copyright © 2015 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -18,15 +19,20 @@
 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 (define-module (gnu packages fltk)
-  #:use-module ((guix licenses) #:select (lgpl2.0))
+  #:use-module ((guix licenses) #:select (lgpl2.0 lgpl2.0+))
   #:use-module (gnu packages)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages image)
   #:use-module (gnu packages xorg)
   #:use-module (gnu packages gl)
+  #:use-module (gnu packages gtk) ;for "cairo"
+  #:use-module (gnu packages pkg-config)
+  #:use-module (gnu packages python)
   #:use-module (guix packages)
   #:use-module (guix download)
-  #:use-module (guix build-system gnu))
+  #:use-module (guix git-download)
+  #:use-module (guix build-system gnu)
+  #:use-module (guix build-system waf))
 
 (define-public fltk
   (package
@@ -83,3 +89,48 @@ emulation.  FLTK is designed to be small and modular enough to be statically
 linked, but works fine as a shared library.  FLTK also includes an excellent
 UI builder called FLUID that can be used to create applications in minutes.")
     (license lgpl2.0))) ; plus certain additional permissions
+
+(define-public ntk
+  (package
+    (name "ntk")
+    (version "1.3.0")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "git://git.tuxfamily.org/gitroot/non/fltk.git")
+                    (commit (string-append "v" version))))
+              (sha256
+               (base32
+                "0ggrh6rihf676z1vfgpgcl6kpqwyh39ih0hskcgzklh7fphfik39"))
+              (file-name (string-append name "-" version "-checkout"))))
+    (build-system waf-build-system)
+    (arguments
+     `(#:tests? #f ;no "check" target
+       #:python ,python-2
+       #:configure-flags '("--enable-gl")
+       #:phases
+       (modify-phases %standard-phases
+         (add-before
+          'configure 'set-ldflags
+          (lambda* (#:key outputs #:allow-other-keys)
+            (setenv "LDFLAGS"
+                    (string-append "-Wl,-rpath="
+                                   (assoc-ref outputs "out") "/lib")))))))
+    (inputs
+     `(("libjpeg" ,libjpeg)
+       ("glu" ,glu)))
+    ;; ntk.pc lists "x11" and "xft" in Requires.private, and "cairo" in
+    ;; Requires.
+    (propagated-inputs
+     `(("cairo" ,cairo)
+       ("libxft" ,libxft)
+       ("libx11" ,libx11)))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (home-page "http://non.tuxfamily.org/ntk/")
+    (synopsis "Fork of FLTK with graphics rendering via Cairo")
+    (description "The Non Tool Kit (NTK) is a fork of the Fast Light ToolKit
+library, adding improved graphics rendering via Cairo, a streamlined and
+enhanced widget set, and other features designed to improve the appearance and
+performance of the Non applications.")
+    (license lgpl2.0+))) ; plus certain additional permissions

gnu/packages/fonts.scm

@@ -4,6 +4,8 @@
 ;;; Copyright © 2014 Joshua Grant <tadni@riseup.net>
 ;;; Copyright © 2014 Alex Kost <alezost@gmail.com>
 ;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com>
+;;; Copyright © 2015 Eric Dvorsak <eric@dvorsak.fr>
+;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -28,10 +30,90 @@
   #:use-module (guix build-system trivial)
   #:use-module (gnu packages base)
   #:use-module (gnu packages compression)
+  #:use-module (gnu packages zip)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages xorg)
   #:use-module (gnu packages pkg-config))
 
+(define-public font-inconsolata
+  (package
+    (name "font-inconsolata")
+    (version "0.80")
+    (source (origin
+              (method url-fetch)
+              (uri "http://www.levien.com/type/myfonts/Inconsolata.otf")
+              (sha256
+               (base32
+                "06js6znbcf7swn8y3b8ki416bz96ay7d3yvddqnvi88lqhbfcq8m"))))
+    (build-system trivial-build-system)
+    (arguments
+     `(#:modules ((guix build utils))
+       #:builder (begin
+                   (use-modules (guix build utils))
+                   (let ((font-dir (string-append %output
+                                                  "/share/fonts/opentype"))
+                         (source (assoc-ref %build-inputs "source")))
+                     (mkdir-p font-dir)
+                     (copy-file source
+                                (string-append font-dir "/" "inconsolata.otf"))))))
+    (native-inputs `(("source" ,source)))
+    (home-page "http://levien.com/type/myfonts/inconsolata.html")
+    (synopsis "Monospace font")
+    (description "A monospace font, designed for code listings and the like,
+in print.  With attention to detail for high resolution rendering.")
+    (license license:silofl1.1)))
+
+(define-public font-ubuntu
+  (package
+    (name "font-ubuntu")
+    (version "0.80")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "http://font.ubuntu.com/download/ubuntu-font-family-"
+                                  version ".zip"))
+              (sha256
+               (base32
+                "0k4f548riq23gmw4zhn30qqkcpaj4g2ab5rbc3lflfxwkc4p0w8h"))))
+    (build-system trivial-build-system)
+    (arguments
+     `(#:modules ((guix build utils))
+       #:builder (begin
+                   (use-modules (guix build utils)
+                                (srfi srfi-26))
+
+                   (let ((PATH     (string-append (assoc-ref %build-inputs
+                                                             "unzip")
+                                                  "/bin"))
+                         (font-dir (string-append %output
+                                                  "/share/fonts/truetype"))
+                         (doc-dir  (string-append %output "/share/doc/"
+                                                  ,name "-" ,version)))
+                     (setenv "PATH" PATH)
+                     (system* "unzip" (assoc-ref %build-inputs "source"))
+
+                     (mkdir-p font-dir)
+                     (mkdir-p doc-dir)
+                     (chdir (string-append "ubuntu-font-family-" ,version))
+                     (for-each (lambda (ttf)
+                                 (copy-file ttf
+                                            (string-append font-dir "/" ttf)))
+                               (find-files "." "\\.ttf$"))
+                     (for-each (lambda (doc)
+                                 (copy-file doc
+                                            (string-append doc-dir "/" doc)))
+                               (find-files "." "\\.txt$"))))))
+    (native-inputs `(("source" ,source)
+                     ("unzip" ,unzip)))
+    (home-page "http://font.ubuntu.com/")
+    (synopsis "The Ubuntu Font Family")
+    (description "The Ubuntu Font Family is a unique, custom designed font
+that has a very distinctive look and feel.  This package provides the
+TrueType (TTF) files.")
+    (license
+     (license:non-copyleft
+      "http://font.ubuntu.com/ufl/ubuntu-font-licence-1.0.txt"
+      "Ubuntu Font License v1.0"))))
+
 (define-public font-dejavu
   (package
     (name "font-dejavu")
@@ -308,17 +390,17 @@ for long (8 and more hours per day) work with computers.")
 (define-public font-adobe-source-han-sans
   (package
     (name "font-adobe-source-han-sans")
-    (version "1.001R")
+    (version "1.004")
     (source (origin
               (method url-fetch)
               (uri (string-append
                     "https://github.com/adobe-fonts/source-han-sans/archive/"
-                    version ".tar.gz"))
-              (file-name (string-append "source-han-sans-" version ".tar.gz"))
+                    version "R.tar.gz"))
+              (file-name (string-append "source-han-sans-" version "R.tar.gz"))
               (sha256
                (base32
-                "0cwz3d8jancl0a7vbjxhnh1vgwsjba62lahfjya9yrjkp1ndxlap"))))
-    (outputs '("out"                 ; OpenType/CFF Collection (OTC), 119 MiB.
+                "1ssx0fw90sy6mj8fv8fv4dgzszpqwbmwpjnlx16g4pvaqzdmybbz"))))
+    (outputs '("out"                 ; OpenType/CFF Collection (OTC), 121 MiB.
                "cn" "jp" "kr" "tw")) ; Region-specific Subset OpenType/CFF.
     (build-system trivial-build-system)
     (arguments
@@ -339,12 +421,13 @@ for long (8 and more hours per day) work with computers.")
                                                    "/share/fonts/opentype")))))
            (setenv "PATH" PATH)
            (system* tar "xvf" (assoc-ref %build-inputs "source"))
-           (chdir (string-append "source-han-sans-" ,version))
+           (chdir (string-append "source-han-sans-" ,version "R"))
            (install-opentype-fonts "OTC" "out")
            (install-opentype-fonts "SubsetOTF/CN" "cn")
            (install-opentype-fonts "SubsetOTF/JP" "jp")
            (install-opentype-fonts "SubsetOTF/KR" "kr")
-           (install-opentype-fonts "SubsetOTF/TW" "tw")))))
+           (install-opentype-fonts "SubsetOTF/TW" "tw")
+           (for-each delete-file (find-files %output "\\.zip$"))))))
     (native-inputs
      `(("gzip" ,gzip)
        ("tar" ,tar)))
@@ -357,7 +440,7 @@ And in several OpenType/CFF-based deployment configurations to accommodate
 various system requirements or limitations.  As the name suggests, Pan-CJK
 fonts are intended to support the characters necessary to render or display
 text in Simplified Chinese, Traditional Chinese, Japanese, and Korean.")
-    (license license:asl2.0)))
+    (license license:silofl1.1)))
 
 (define-public font-wqy-zenhei
   (package
@@ -405,3 +488,142 @@ code-points needed for zh_cn, zh_sg, zh_tw, zh_hk, zh_mo, ja (Japanese) and
 ko (Korean) locales for fontconfig.")
     ;; GPLv2 with font embedding exception
     (license license:gpl2)))
+
+(define-public font-tex-gyre
+  (package
+    (name "font-tex-gyre")
+    (version "2.005")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "http://www.gust.org.pl/projects/e-foundry/"
+                           "tex-gyre/whole/tg-" version "otf.zip"))
+       (sha256
+        (base32
+         "0kph9l3g7jb2bpmxdbdg5zl56wacmnvdvsdn7is1gc750sqvsn31"))))
+    (build-system trivial-build-system)
+    (arguments
+     `(#:modules ((guix build utils))
+       #:builder
+       (begin
+         (use-modules (guix build utils))
+
+         (let ((unzip    (string-append (assoc-ref %build-inputs "unzip")
+                                        "/bin/unzip"))
+               (font-dir (string-append %output "/share/fonts/opentype")))
+           (mkdir-p font-dir)
+           (system* unzip
+                    (assoc-ref %build-inputs "source")
+                    "-d" font-dir)))))
+    (native-inputs
+     `(("unzip" ,unzip)))
+    (home-page "http://www.gust.org.pl/projects/e-foundry/tex-gyre/")
+    (synopsis "Remake of Ghostscript fonts")
+    (description "The TeX Gyre collection of fonts is the result of an
+extensive remake and extension of the freely available base PostScript fonts
+distributed with Ghostscript version 4.00.  The collection contains the
+following fonts in the OpenType format: Adventor, Bonum, Chorus, Cursor,
+Heros, Pagella, Schola, Termes.")
+    (license license:gfl1.0)))
+
+(define-public font-anonymous-pro
+  (package
+    (name "font-anonymous-pro")
+    (version "1.002")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "http://www.marksimonson.com/assets/content/fonts/"
+                    "AnonymousPro-" version ".zip"))
+              (sha256
+               (base32
+                "1asj6lykvxh46czbal7ymy2k861zlcdqpz8x3s5bbpqwlm3mhrl6"))))
+    (build-system trivial-build-system)
+    (arguments
+     `(#:modules ((guix build utils))
+       #:builder
+       (begin
+         (use-modules (guix build utils))
+         (let ((unzip (string-append (assoc-ref %build-inputs "unzip")
+                                     "/bin/unzip"))
+               (font-dir (string-append %output "/share/fonts/truetype"))
+               (doc-dir  (string-append %output "/share/doc/" ,name)))
+           (system* unzip (assoc-ref %build-inputs "source"))
+           (mkdir-p font-dir)
+           (mkdir-p doc-dir)
+           (chdir (string-append "AnonymousPro-" ,version ".001"))
+           (for-each (lambda (ttf)
+                       (copy-file ttf
+                                  (string-append font-dir "/" ttf)))
+                     (find-files "." "\\.ttf$"))
+           (for-each (lambda (doc)
+                       (copy-file doc
+                                  (string-append doc-dir "/" doc)))
+                     (find-files "." "\\.txt$"))))))
+    (native-inputs
+     `(("unzip" ,unzip)))
+    (home-page "http://www.marksimonson.com/fonts/view/anonymous-pro")
+    (synopsis "Fixed-width fonts designed with coding in mind")
+    (description "Anonymous Pro is a family of four fixed-width fonts designed
+with coding in mind.  Anonymous Pro features an international, Unicode-based
+character set, with support for most Western and Central European Latin-based
+languages, plus Greek and Cyrillic.")
+    (license license:silofl1.1)))
+
+(define-public font-gnu-unifont
+  (package
+    (name "font-gnu-unifont")
+    (version "8.0.01")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "mirror://gnu/unifont/unifont-8.0.01/unifont-"
+                    version ".tar.gz"))
+              (sha256
+               (base32
+                "176bzc2y3i49xavrmbyyz5lkqp0qq3bkj7rjrl197kib873by82b"))))
+    (build-system gnu-build-system)
+    (outputs '("out" ; TrueType version
+               "pcf" ; PCF (bitmap) version
+               "psf" ; PSF (console) version
+               "bin" ; Utilities to manipulate '.hex' format
+               ))
+    (arguments
+     '(#:parallel-build? #f ; parallel build fails
+       #:tests? #f          ; no check target
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'configure
+                  (lambda _
+                    (setenv "CC" "gcc")))
+         (replace
+          'install
+          (lambda* (#:key outputs #:allow-other-keys)
+            (let* ((ttf (string-append (assoc-ref outputs "out")
+                                       "/share/fonts/truetype"))
+                   (pcf (string-append (assoc-ref outputs "pcf")
+                                       "/share/fonts/misc"))
+                   (psf (string-append (assoc-ref outputs "psf")
+                                       "/share/consolefonts"))
+                   (bin (assoc-ref outputs "bin")))
+              (system* "make"
+                       (string-append "PREFIX=" bin)
+                       (string-append "TTFDEST=" ttf)
+                       (string-append "PCFDEST=" pcf)
+                       (string-append "CONSOLEDEST=" psf)
+                       "install")
+              ;; Move Texinfo file to the right place.
+              (mkdir (string-append bin "/share/info"))
+              (rename-file (string-append bin "/share/unifont/unifont.info.gz")
+                           (string-append bin "/share/info/unifont.info.gz"))
+              #t))))))
+    (inputs
+     `(("perl" ,perl))) ; for utilities
+    (synopsis
+     "Large bitmap font covering Unicode's Basic Multilingual Plane")
+    (description
+     "GNU Unifont is a bitmap font covering essentially all of
+Unicode's Basic Multilingual Plane.  The package also includes
+utilities to ease adding new glyphs to the font.")
+    (home-page "http://unifoundry.com/unifont.html")
+    (license license:gpl2+)))