mirror of
https://git.savannah.gnu.org/git/guix.git
synced 2026-04-06 21:20:33 +02:00
gnu: Add mantid.
* gnu/packages/physics.scm (mantid): New variable. * gnu/packages/patches/mantid-openmp-cleanup.patch: New file. * gnu/local.mk: Register it. Change-Id: Ie037b5812acbd55677a67f70de2e46466e992367
This commit is contained in:
Danny Milosavljevic
@@ -1881,6 +1881,7 @@ dist_patch_DATA = \
|
||||
%D%/packages/patches/mactelnet-remove-init.patch \
|
||||
%D%/packages/patches/mailutils-variable-lookup.patch \
|
||||
%D%/packages/patches/mandoc-support-zstd-compression.patch \
|
||||
%D%/packages/patches/mantid-openmp-cleanup.patch \
|
||||
%D%/packages/patches/make-impure-dirs.patch \
|
||||
%D%/packages/patches/makem-replace-git.patch \
|
||||
%D%/packages/patches/marisa-fix-MARISA_WORD_SIZE.patch \
|
||||
|
||||
126
gnu/packages/patches/mantid-openmp-cleanup.patch
Normal file
126
gnu/packages/patches/mantid-openmp-cleanup.patch
Normal file
@@ -0,0 +1,126 @@
|
||||
From 42ea31e762ceac723d80e1ce7f3df459e83383da Mon Sep 17 00:00:00 2001
|
||||
Message-ID: <42ea31e762ceac723d80e1ce7f3df459e83383da.1765240044.git.danny.milosavljevic@tuwien.ac.at>
|
||||
From: Danny Milosavljevic <danny.milosavljevic@tuwien.ac.at>
|
||||
Date: Tue, 9 Dec 2025 00:46:45 +0100
|
||||
Subject: [PATCH] Shut down OpenMP in time
|
||||
|
||||
Fixes test cleanup segfaults.
|
||||
|
||||
---
|
||||
.../Kernel/inc/MantidKernel/MultiThreaded.h | 5 +++
|
||||
.../mantid/kernel/CMakeLists.txt | 2 ++
|
||||
.../kernel/src/Exports/ThreadLifecycle.cpp | 12 +++++++
|
||||
.../test/testhelpers/testrunner.py | 32 ++++++++++++-------
|
||||
4 files changed, 39 insertions(+), 12 deletions(-)
|
||||
create mode 100644 Framework/PythonInterface/mantid/kernel/src/Exports/ThreadLifecycle.cpp
|
||||
|
||||
diff --git a/Framework/Kernel/inc/MantidKernel/MultiThreaded.h b/Framework/Kernel/inc/MantidKernel/MultiThreaded.h
|
||||
index 84be778dcad..33d927a4a46 100644
|
||||
--- a/Framework/Kernel/inc/MantidKernel/MultiThreaded.h
|
||||
+++ b/Framework/Kernel/inc/MantidKernel/MultiThreaded.h
|
||||
@@ -212,6 +212,8 @@ inline void setMaxCoresToConfig() {
|
||||
*/
|
||||
#define PRAGMA_OMP(expression) PRAGMA(omp expression)
|
||||
|
||||
+#define PARALLEL_SHUTDOWN_THREAD_RESOURCES omp_pause_resource(omp_pause_soft, 0)
|
||||
+
|
||||
#else //_OPENMP
|
||||
|
||||
/// Empty definitions - to enable set your complier to enable openMP
|
||||
@@ -232,4 +234,7 @@ inline void setMaxCoresToConfig() {
|
||||
#define PARALLEL_SECTIONS
|
||||
#define PARALLEL_SECTION
|
||||
#define PRAGMA_OMP(expression)
|
||||
+
|
||||
+#define PARALLEL_SHUTDOWN_THREAD_RESOURCES
|
||||
+
|
||||
#endif //_OPENMP
|
||||
diff --git a/Framework/PythonInterface/mantid/kernel/CMakeLists.txt b/Framework/PythonInterface/mantid/kernel/CMakeLists.txt
|
||||
index 3700d361303..1454785b0d2 100644
|
||||
--- a/Framework/PythonInterface/mantid/kernel/CMakeLists.txt
|
||||
+++ b/Framework/PythonInterface/mantid/kernel/CMakeLists.txt
|
||||
@@ -56,9 +56,11 @@ set(EXPORT_FILES
|
||||
src/Exports/PropertyHistory.cpp
|
||||
src/Exports/Memory.cpp
|
||||
src/Exports/ProgressBase.cpp
|
||||
+ src/Exports/ThreadLifecycle.cpp
|
||||
src/Exports/Material.cpp
|
||||
src/Exports/MaterialBuilder.cpp
|
||||
src/Exports/Statistics.cpp
|
||||
+
|
||||
src/Exports/TimeROI.cpp
|
||||
src/Exports/OptionalBool.cpp
|
||||
src/Exports/UsageService.cpp
|
||||
diff --git a/Framework/PythonInterface/mantid/kernel/src/Exports/ThreadLifecycle.cpp b/Framework/PythonInterface/mantid/kernel/src/Exports/ThreadLifecycle.cpp
|
||||
new file mode 100644
|
||||
index 00000000000..85221753421
|
||||
--- /dev/null
|
||||
+++ b/Framework/PythonInterface/mantid/kernel/src/Exports/ThreadLifecycle.cpp
|
||||
@@ -0,0 +1,12 @@
|
||||
+#include "MantidKernel/MultiThreaded.h"
|
||||
+#include <boost/python/class.hpp>
|
||||
+
|
||||
+using namespace boost::python;
|
||||
+
|
||||
+static inline void releaseThreadResources() {
|
||||
+ PARALLEL_SHUTDOWN_THREAD_RESOURCES;
|
||||
+}
|
||||
+
|
||||
+void export_ThreadLifecycle() {
|
||||
+ def("releaseThreadResources", &releaseThreadResources, "Explicitly release OpenMP thread resources"); // to prevent shutdown crashes
|
||||
+}
|
||||
diff --git a/Framework/PythonInterface/test/testhelpers/testrunner.py b/Framework/PythonInterface/test/testhelpers/testrunner.py
|
||||
index 2b29d73a565..91a76c4a92c 100644
|
||||
--- a/Framework/PythonInterface/test/testhelpers/testrunner.py
|
||||
+++ b/Framework/PythonInterface/test/testhelpers/testrunner.py
|
||||
@@ -17,7 +17,7 @@ from importlib.machinery import SourceFileLoader
|
||||
import os
|
||||
import sys
|
||||
import unittest
|
||||
-
|
||||
+from mantid.kernel import releaseThreadResources
|
||||
|
||||
def main(argv):
|
||||
"""
|
||||
@@ -47,17 +47,25 @@ def main(argv):
|
||||
this_globals[key] = getattr(test_module, key)
|
||||
|
||||
# create runner & execute
|
||||
- unittest.main(
|
||||
- module=test_module,
|
||||
- # We've processed the test source so don't let unittest try to reparse it
|
||||
- # This forces it to load the tests from the supplied module
|
||||
- argv=(argv[0],),
|
||||
- # these make sure that some options that are not applicable
|
||||
- # remain hidden from the help menu.
|
||||
- failfast=False,
|
||||
- buffer=False,
|
||||
- catchbreak=False,
|
||||
- )
|
||||
+ try:
|
||||
+ test_program = unittest.main(
|
||||
+ module=test_module,
|
||||
+ # We've processed the test source so don't let unittest try to reparse it
|
||||
+ # This forces it to load the tests from the supplied module
|
||||
+ argv=(argv[0],),
|
||||
+ # these make sure that some options that are not applicable
|
||||
+ # remain hidden from the help menu.
|
||||
+ failfast=False,
|
||||
+ buffer=False,
|
||||
+ catchbreak=False,
|
||||
+ exit=False,
|
||||
+ )
|
||||
+ os._exit(not test_program.result.wasSuccessful())
|
||||
+ finally:
|
||||
+ try:
|
||||
+ releaseThreadResources()
|
||||
+ except:
|
||||
+ pass
|
||||
|
||||
|
||||
def module_name(pathname):
|
||||
|
||||
base-commit: 6f608113ffd400469ed039fc13856d215f3cb79c
|
||||
--
|
||||
2.52.0
|
||||
|
||||
@@ -29,13 +29,22 @@
|
||||
#:use-module (guix utils)
|
||||
#:use-module (gnu packages)
|
||||
#:use-module (gnu packages algebra)
|
||||
#:use-module (gnu packages boost)
|
||||
#:use-module (gnu packages build-tools)
|
||||
#:use-module (gnu packages check)
|
||||
#:use-module (gnu packages cmake)
|
||||
#:use-module (gnu packages compression)
|
||||
#:use-module (gnu packages cpp)
|
||||
#:use-module (gnu packages documentation)
|
||||
#:use-module (gnu packages gcc)
|
||||
#:use-module (gnu packages gl)
|
||||
#:use-module (gnu packages image)
|
||||
#:use-module (gnu packages image-processing)
|
||||
#:use-module (gnu packages jemalloc)
|
||||
#:use-module (gnu packages jupyter)
|
||||
#:use-module (gnu packages machine-learning)
|
||||
#:use-module (gnu packages maths)
|
||||
#:use-module (gnu packages networking)
|
||||
#:use-module (gnu packages ninja)
|
||||
#:use-module (gnu packages noweb)
|
||||
#:use-module (gnu packages pkg-config)
|
||||
@@ -48,7 +57,12 @@
|
||||
#:use-module (gnu packages python-science)
|
||||
#:use-module (gnu packages python-web)
|
||||
#:use-module (gnu packages python-xyz)
|
||||
#:use-module (gnu packages qt))
|
||||
#:use-module (gnu packages qt)
|
||||
#:use-module (gnu packages serialization)
|
||||
#:use-module (gnu packages tbb)
|
||||
#:use-module (gnu packages time)
|
||||
#:use-module (gnu packages tls)
|
||||
#:use-module (gnu packages xorg))
|
||||
|
||||
(define-public python-brille
|
||||
(package
|
||||
@@ -669,3 +683,949 @@ simulating inelastic neutron scattering (INS) from force constants. It can
|
||||
read output from CASTEP and Phonopy and calculate phonon frequencies,
|
||||
eigenvectors, and structure factors.")
|
||||
(license license:gpl3+)))
|
||||
|
||||
(define-public mantid
|
||||
(package
|
||||
(name "mantid")
|
||||
(version "6.14.0.3")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/mantidproject/mantid")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "0d41wcwv8kpka086gqz3ywdbrrbkxpaxfq7hhgqf3w8f2n6jilw5"))
|
||||
(patches
|
||||
(search-patches "mantid-openmp-cleanup.patch"))))
|
||||
(build-system qt-build-system)
|
||||
(arguments
|
||||
(list
|
||||
#:build-type "Release"
|
||||
#:configure-flags
|
||||
#~(list "-DENABLE_MANTIDQT=ON"
|
||||
"-DENABLE_WORKBENCH=ON"
|
||||
"-DENABLE_DOCS=OFF"
|
||||
"-DENABLE_PRECOMMIT=OFF"
|
||||
"-DCMAKE_CXX_STANDARD=20"
|
||||
"-DCMAKE_SKIP_BUILD_RPATH=FALSE"
|
||||
"-DCMAKE_BUILD_WITH_INSTALL_RPATH=FALSE"
|
||||
"-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE"
|
||||
(string-append "-DCMAKE_PREFIX_PATH="
|
||||
#$(this-package-input "qtbase"))
|
||||
(string-append "-DPYQT5_SIP_DIR="
|
||||
#$(this-package-input "python-pyqt")
|
||||
"/lib/python3.11/site-packages/PyQt5/bindings"))
|
||||
#:modules '((guix build qt-build-system)
|
||||
(guix build utils)
|
||||
(ice-9 textual-ports))
|
||||
#:phases
|
||||
#~(modify-phases %standard-phases
|
||||
(add-after 'unpack 'fix-boost-system
|
||||
(lambda _
|
||||
;; Enable core dumps.
|
||||
(setrlimit 'core #f #f)
|
||||
;; boost_system is now header-only in modern boost (>= 1.69)
|
||||
;; and not a separate cmake target. Remove from COMPONENTS.
|
||||
;; Also disable HDF4 support as Guix doesn't have an hdf4 package
|
||||
;; anymore.
|
||||
(substitute* "buildconfig/CMake/CommonSetup.cmake"
|
||||
(("date_time regex serialization filesystem system")
|
||||
"date_time regex serialization filesystem")
|
||||
(("find_package\\(HDF4 REQUIRED\\)")
|
||||
"# HDF4 disabled - no hdf4 package in Guix"))
|
||||
(substitute* "Framework/LegacyNexus/CMakeLists.txt"
|
||||
(("\\$\\{HDF4_DF_LIBRARY\\} \\$\\{HDF4_MFHDF_LIBRARY\\} ")
|
||||
""))
|
||||
(substitute* "Framework/LegacyNexus/inc/MantidLegacyNexus/napiconfig.h"
|
||||
(("#define WITH_HDF4")
|
||||
"/* #define WITH_HDF4 - disabled, no hdf4 in Guix */"))))
|
||||
(add-after 'unpack 'fix-version-detection
|
||||
(lambda _
|
||||
;; The cmake build uses versioningit with git to determine the
|
||||
;; version. Since git is not available during build, we create
|
||||
;; a simple cmake file that sets the version directly.
|
||||
(call-with-output-file "buildconfig/CMake/VersionNumber.cmake"
|
||||
(lambda (port)
|
||||
(format port "# Version information - patched for Guix build
|
||||
set(VERSION_MAJOR ~a)
|
||||
set(VERSION_MINOR ~a)
|
||||
set(VERSION_PATCH ~a)
|
||||
set(VERSION_TWEAK \"\")
|
||||
set(REVISION_FULL \"v~a\")
|
||||
set(REVISION_SHORT \"v~a\")
|
||||
set(REVISION_DATE \"Thu, 06 Nov 2025\")
|
||||
message(STATUS \"Version: ${VERSION_MAJOR}.${VERSION_MINOR}.${VERSION_PATCH}${VERSION_TWEAK}\")
|
||||
"
|
||||
#$(version-major version)
|
||||
#$(cadr (string-split version #\.))
|
||||
#$(string-drop version (+ 1 (string-length (version-major+minor version))))
|
||||
#$version
|
||||
#$version)))))
|
||||
(add-after 'unpack 'use-system-googletest
|
||||
(lambda _
|
||||
;; The cmake build tries to fetch googletest from git.
|
||||
;; We use the system googletest instead.
|
||||
;; Also include CMakePackageConfigHelpers and GNUInstallDirs
|
||||
;; which are needed by Framework/CMakeLists.txt.
|
||||
(with-output-to-file "buildconfig/CMake/GoogleTest.cmake"
|
||||
(lambda ()
|
||||
(display "# Use system googletest
|
||||
include(CMakePackageConfigHelpers)
|
||||
include(GNUInstallDirs)
|
||||
|
||||
find_package(GTest REQUIRED)
|
||||
# Create aliases that mantid expects
|
||||
if(NOT TARGET gmock)
|
||||
add_library(gmock ALIAS GTest::gmock)
|
||||
endif()
|
||||
if(NOT TARGET gtest)
|
||||
add_library(gtest ALIAS GTest::gtest)
|
||||
endif()
|
||||
if(NOT TARGET gmock_main)
|
||||
add_library(gmock_main ALIAS GTest::gmock_main)
|
||||
endif()
|
||||
if(NOT TARGET gtest_main)
|
||||
add_library(gtest_main ALIAS GTest::gtest_main)
|
||||
endif()
|
||||
")))))
|
||||
(add-after 'unpack 'fix-sip-include-dirs
|
||||
(lambda* (#:key inputs #:allow-other-keys)
|
||||
;; sip-build needs to find PyQt5's .sip files for %Import directives.
|
||||
;; Add sip-include-dirs to the pyproject.toml template.
|
||||
(let ((pyqt-sip-dir (string-append (assoc-ref inputs "python-pyqt")
|
||||
"/lib/python3.11/site-packages/PyQt5/bindings")))
|
||||
(substitute* "buildconfig/CMake/sip-templates/pyproject.toml.in"
|
||||
(("\\[tool\\.sip\\.project\\]")
|
||||
(string-append "[tool.sip.project]\n"
|
||||
"sip-include-dirs = [\"" pyqt-sip-dir "\"]"))))))
|
||||
(add-after 'unpack 'fix-pip-no-network
|
||||
(lambda _
|
||||
;; The build-phase editable install is only for developer convenience
|
||||
;; (creates egg-links so devs can import from build dir).
|
||||
;; Skip it entirely - they will just touch the stamp file.
|
||||
;;
|
||||
;; The install-phase pip install still runs and does the real work.
|
||||
(substitute* "buildconfig/CMake/PythonPackageTargetFunctions.cmake"
|
||||
(("\\$\\{Python_EXECUTABLE\\} -m pip install --editable \\.")
|
||||
"${CMAKE_COMMAND} -E true")
|
||||
(("pip install \\$\\{CMAKE_CURRENT_SOURCE_DIR\\}")
|
||||
"pip install --no-build-isolation --prefix ${CMAKE_INSTALL_PREFIX} ${CMAKE_CURRENT_SOURCE_DIR}"))))
|
||||
;; Remove dependencies on UnitTestData (requires network to download).
|
||||
;; Tests that need external data will be excluded from ctest.
|
||||
(add-after 'unpack 'remove-external-data-dependencies
|
||||
(lambda _
|
||||
(substitute* (find-files "." "CMakeLists\\.txt$")
|
||||
(("add_dependencies\\([A-Za-z]+Test UnitTestData\\)") ""))))
|
||||
(add-after 'unpack 'fix-rpath-for-guix
|
||||
(lambda _
|
||||
;; Mantid sets INSTALL_RPATH explicitly per-target, which overrides
|
||||
;; CMAKE_INSTALL_RPATH_USE_LINK_PATH. Rename the property to a
|
||||
;; non-existent name so CMake ignores it and uses the global setting.
|
||||
;;
|
||||
;; The pattern "PROPERTIES INSTALL_RPATH" only matches the property
|
||||
;; name in set_target_properties() calls, not:
|
||||
;; - CMAKE_INSTALL_RPATH (variable name)
|
||||
;; - CMAKE_INSTALL_RPATH_USE_LINK_PATH (variable name)
|
||||
;; - LINUX_INSTALL_RPATH (function keyword parameter)
|
||||
;; - PARSED_LINUX_INSTALL_RPATH (parsed argument variable)
|
||||
(substitute* (append (filter (lambda (f)
|
||||
(not (string-contains f "PythonInterface")))
|
||||
(find-files "." "CMakeLists\\.txt$"))
|
||||
(find-files "buildconfig/CMake" "\\.cmake$"))
|
||||
(("PROPERTIES INSTALL_RPATH")
|
||||
"PROPERTIES DISABLED_INSTALL_RPATH"))
|
||||
;; Fix EXT_INSTALL_RPATH for Python modules - the relative path
|
||||
;; is totally invalid.
|
||||
(substitute* "Framework/PythonInterface/CMakeLists.txt"
|
||||
(("set\\(EXT_INSTALL_RPATH [^)]*\\)")
|
||||
(string-append "set(EXT_INSTALL_RPATH \"" #$output "/lib;" #$output "/plugins\")")))))
|
||||
(add-after 'unpack 'remove-disable-new-dtags
|
||||
(lambda _
|
||||
;; Remove the --disable-new-dtags flag--so it uses modern RUNPATH
|
||||
;; instead of RPATH.
|
||||
(substitute* "buildconfig/CMake/GNUSetup.cmake"
|
||||
(("-Wl,--disable-new-dtags")
|
||||
""))
|
||||
(substitute* "qt/python/mantidqt/mantidqt/widgets/codeeditor/test/test_codeeditor.py"
|
||||
(("exc\\.__name__") "type(exc).__name__"))
|
||||
;; np.all on tuple doesn't compare - it just checks truthiness.
|
||||
(substitute* "scripts/test/Engineering/texture/test_TextureUtils.py"
|
||||
(("self\\.assertTrue\\(np\\.all\\(\\(_get_run_and_prefix_from_ws_log\\(mock_ws, ws_name\\), \\(run_number, prefix\\)\\)\\)\\)")
|
||||
"self.assertEqual(_get_run_and_prefix_from_ws_log(mock_ws, ws_name), (run_number, prefix))"))
|
||||
(substitute* "scripts/test/Engineering/common/test_texture_sample_viewer.py"
|
||||
(("self\\.assertTrue\\(np\\.all\\(\\(mesh\\.shape, \\(12, 3, 3\\)\\)\\)\\)")
|
||||
"self.assertEqual(mesh.shape, (12, 3, 3))")
|
||||
(("self\\.assertTrue\\(np\\.all\\(\\(np\\.unique\\(mesh\\), \\(-1, 1\\)\\)\\)\\)")
|
||||
"self.assertTrue(np.array_equal(np.unique(mesh), np.array([-1, 1])))")
|
||||
(("self\\.assertTrue\\(np\\.all\\(\\(mesh, self\\.get_cube_mesh\\(2\\)\\)\\)\\)")
|
||||
"self.assertTrue(np.array_equal(mesh, self.get_cube_mesh(2)))"))
|
||||
(substitute*
|
||||
"qt/python/mantidqtinterfaces/mantidqtinterfaces/Engineering/gui/engineering_diffraction/tabs/texture/test/test_texture_presenter.py"
|
||||
(("self\\.assertTrue\\(np\\.all\\(\\(self\\.presenter\\.ws_names, \\[\"existing_ws\", \"new_ws\"\\]\\)\\)\\)")
|
||||
"self.assertEqual(self.presenter.ws_names, [\"existing_ws\", \"new_ws\"])")
|
||||
(("self\\.assertTrue\\(np\\.all\\(\\(self\\.presenter\\.ws_names, \\[\"ws2\"\\]\\)\\)\\)")
|
||||
"self.assertEqual(self.presenter.ws_names, [\"ws2\"])")
|
||||
(("self\\.assertTrue\\(np\\.all\\(\\(self\\.presenter\\.get_assigned_params\\(\\), \\[\"param2\"\\]\\)\\)\\)")
|
||||
"self.assertEqual(self.presenter.get_assigned_params(), [\"param2\"])"))
|
||||
;; np.xrange never existed; use range() for index iteration.
|
||||
(substitute* "scripts/SCD_Reduction/BVGFitTools.py"
|
||||
(("np\\.xrange") "range"))
|
||||
;; set_draggable fails with offscreen backend (KeyError: 'pick_event').
|
||||
(substitute* "Framework/PythonInterface/mantid/plots/utility.py"
|
||||
(("getattr\\(legend, SET_DRAGGABLE_METHOD\\)\\(state, use_blit, update\\)")
|
||||
"try:\n getattr(legend, SET_DRAGGABLE_METHOD)(state, use_blit, update)\n except KeyError:\n pass # Offscreen backend doesn't support draggable legends"))
|
||||
;; legendTest.py imports matplotlib.pyplot without setting Agg backend,
|
||||
;; causing Qt5Agg to fail display_is_valid() check.
|
||||
(substitute* "Framework/PythonInterface/test/python/mantid/plots/legendTest.py"
|
||||
(("import matplotlib\\.pyplot as plt")
|
||||
"import matplotlib
|
||||
matplotlib.use(\"AGG\")
|
||||
import matplotlib.pyplot as plt"))
|
||||
;; tostring_rgb() was removed in matplotlib 3.9; use buffer_rgba().
|
||||
;; buffer_rgba() returns RGBA (4 channels) instead of RGB (3).
|
||||
(substitute* "Framework/PythonInterface/test/python/mantid/plots/modest_image/test_modest_image.py"
|
||||
(("\\.tostring_rgb\\(\\)") ".buffer_rgba()")
|
||||
(("np\\.fromstring\\(") "np.frombuffer(")
|
||||
(("np\\.frombuffer\\(([^)]*), sep=\"\"\\)" all args)
|
||||
(string-append "np.frombuffer(" args ")"))
|
||||
(("get_width_height\\(\\)\\[::-1\\] \\+ \\(3,\\)")
|
||||
"get_width_height()[::-1] + (4,)"))
|
||||
;; matplotlib 3.10 changed container tracking; container may
|
||||
;; already be removed when mantid tries to remove it.
|
||||
(substitute* "Framework/PythonInterface/mantid/plots/mantidaxes.py"
|
||||
(("self\\.containers\\.remove\\(artist\\)")
|
||||
"self.containers.remove(artist) if artist in self.containers else None"))
|
||||
(substitute* "qt/python/mantidqt/mantidqt/widgets/plotconfigdialog/curvestabwidget/__init__.py"
|
||||
(("ax\\.containers\\.remove\\(curve\\)")
|
||||
"ax.containers.remove(curve) if curve in ax.containers else None"))))
|
||||
(add-after 'qt-wrap 'unwrap-non-executables
|
||||
(lambda _
|
||||
;; qt-wrap wrapped these files thinking they were executables.
|
||||
;; Restore them so mantid can read them as config/data files.
|
||||
(for-each
|
||||
(lambda (file)
|
||||
(let ((wrapped (string-append #$output "/bin/" file))
|
||||
(real (string-append #$output "/bin/." file "-real")))
|
||||
(when (file-exists? real)
|
||||
(delete-file wrapped)
|
||||
(rename-file real wrapped))))
|
||||
'("Mantid.properties" "mantid-scripts.pth"))))
|
||||
(add-after 'unwrap-non-executables 'wrap-python
|
||||
(lambda _
|
||||
(let* ((python-version #$(version-major+minor (package-version python)))
|
||||
(bin-dir (string-append #$output "/bin"))
|
||||
(site-packages (string-append #$output "/lib/python"
|
||||
python-version "/site-packages")))
|
||||
(for-each
|
||||
(lambda (prog)
|
||||
(wrap-program (string-append bin-dir "/" prog)
|
||||
`("GUIX_PYTHONPATH" prefix
|
||||
(,site-packages ,(getenv "GUIX_PYTHONPATH")))
|
||||
`("PYTHONPATH" prefix (,bin-dir))
|
||||
`("FORCE_QT_API" = ("PyQt5"))))
|
||||
'("launch_mantidworkbench" "workbench" "instrumentview")))))
|
||||
;; Build test executables (they are EXCLUDE_FROM_ALL in CMake).
|
||||
(add-before 'check 'build-tests
|
||||
(lambda* (#:key parallel-build? #:allow-other-keys)
|
||||
(let ((job-count (if parallel-build?
|
||||
(number->string (parallel-job-count))
|
||||
"1")))
|
||||
(invoke "cmake" "--build" "." "--target" "AllTests"
|
||||
"-j" job-count))))
|
||||
;; Fix PYTHONPATH in test configurations. PyUnitTest.cmake bakes
|
||||
;; $ENV{PYTHONPATH} at configure time (empty), so tests can't find
|
||||
;; modules. Also, we disable mantid's sitecustomize.py (which would
|
||||
;; shadow Guix's), so we need to add all paths it would have added.
|
||||
(add-before 'check 'fix-test-pythonpath
|
||||
(lambda _
|
||||
(let* ((source-dir (string-append (dirname (getcwd)) "/source"))
|
||||
(build-dir (getcwd))
|
||||
;; Core mantid module path (would have been in mantid.pth
|
||||
;; if pip --editable was used, but we disabled that).
|
||||
(mantid-path (string-append source-dir "/Framework/PythonInterface"))
|
||||
;; Read paths from .pth files generated by mantid's build
|
||||
(pth-files '("bin/mantid-scripts.pth"
|
||||
"bin/testhelpers.pth"))
|
||||
(pth-paths
|
||||
(apply append
|
||||
(map (lambda (pth-file)
|
||||
(if (file-exists? pth-file)
|
||||
(string-split
|
||||
(string-trim-right
|
||||
(call-with-input-file pth-file
|
||||
get-string-all))
|
||||
#\newline)
|
||||
'()))
|
||||
pth-files)))
|
||||
;; Also add Qt Python packages (not in .pth files)
|
||||
(qt-paths (list (string-append source-dir "/qt/python/mantidqt")
|
||||
(string-append source-dir "/qt/python/mantidqtinterfaces")
|
||||
(string-append source-dir "/qt/python/instrumentview")))
|
||||
;; Add workbench module path for tests that import from workbench
|
||||
(workbench-path (string-append source-dir "/qt/applications/workbench"))
|
||||
(all-paths (string-join (cons mantid-path (append pth-paths qt-paths (list workbench-path))) ":")))
|
||||
(substitute* (find-files "." "CTestTestfile\\.cmake$")
|
||||
;; Prepend paths to tests that already have PYTHONPATH.
|
||||
(("PYTHONPATH=")
|
||||
(string-append "PYTHONPATH=" all-paths ":"))
|
||||
;; Add PYTHONPATH to C++ tests that don't have ENVIRONMENT.
|
||||
;; FindCxxTest.cmake only sets ENVIRONMENT on WIN32.
|
||||
;; Match "PROPERTIES LABELS" (no ENVIRONMENT) to avoid
|
||||
;; duplicating on "PROPERTIES ENVIRONMENT" lines.
|
||||
(("PROPERTIES +LABELS")
|
||||
(string-append "PROPERTIES ENVIRONMENT \"PYTHONPATH="
|
||||
all-paths "\" LABELS"))))
|
||||
;; Disable mantid's sitecustomize.py - it shadows Guix's and
|
||||
;; prevents GUIX_PYTHONPATH from being processed.
|
||||
(rename-file "bin/sitecustomize.py" "bin/sitecustomize.py.bak")))
|
||||
;; Set HOME for tests - mantid's ConfigService needs to create
|
||||
;; files in ~/.mantid during initialization. Create the directory
|
||||
;; upfront to avoid race conditions when tests run in parallel.
|
||||
(add-before 'check 'set-home
|
||||
(lambda _
|
||||
(setenv "HOME" "/tmp")
|
||||
(mkdir-p "/tmp/.mantid")))
|
||||
;; Start Xvfb for tests that need a display. Matplotlib's
|
||||
;; Qt5Agg backend requires a valid X11 or Wayland display
|
||||
;; connection because matplotlib checks XOpenDisplay() or
|
||||
;; wl_display_connect() before allowing Qt backends, even
|
||||
;; though Qt itself works fine with QT_QPA_PLATFORM=offscreen.
|
||||
;; This is a matplotlib design decision to prevent Qt from
|
||||
;; crashing when DISPLAY is set but invalid - but it also
|
||||
;; blocks legitimate headless use.
|
||||
;;
|
||||
;; We also force Qt5Agg backend via MPLBACKEND because several
|
||||
;; tests import matplotlib.pyplot at module level before
|
||||
;; @start_qapplication creates a QApplication. When pyplot is
|
||||
;; imported without a running Qt, it auto-selects TkAgg (the
|
||||
;; default in Guix's matplotlib). Later when Qt starts and the
|
||||
;; test calls plt.subplots(), matplotlib tries to use TkAgg but
|
||||
;; fails with "Cannot load backend 'TkAgg' which requires the
|
||||
;; 'tk' interactive framework, as 'qt' is currently running".
|
||||
;; Affected tests:
|
||||
;; - workbench/plotting/test/test_figuremanager.py
|
||||
;; - mantidqt/widgets/colorbar/test/test_colorbar.py
|
||||
;; - instrumentview/test/test_view.py (via FullInstrumentViewWindow)
|
||||
(add-before 'check 'prepare-x
|
||||
(lambda _
|
||||
(system "Xvfb :99 -screen 0 1024x768x24 &")
|
||||
(setenv "DISPLAY" ":99")
|
||||
(setenv "MPLBACKEND" "Qt5Agg")))
|
||||
;; Exclude tests that require external data files (not available
|
||||
;; in the build sandbox without network access). We exclude
|
||||
;; specific tests that use FileFinder/Load to access external
|
||||
;; data rather than whole modules.
|
||||
(replace 'check
|
||||
(lambda* (#:key tests? parallel-tests? #:allow-other-keys)
|
||||
(when tests?
|
||||
(setenv "OMP_NUM_THREADS" "10")
|
||||
(setenv "OPENBLAS_NUM_THREADS" "10")
|
||||
;; They forgot to omp_pause_resource(omp_pause_soft, 0)
|
||||
;; at the end of the test suite--and now random tests
|
||||
;; were caught in a death race.
|
||||
(setenv "MALLOC_CONF" "tcache:false") ; doesn't work
|
||||
;(setenv "OMP_WAIT_POLICY" "passive")
|
||||
;; Exclude unit tests that need external data or have
|
||||
;; other issues. System tests are excluded via -L UnitTest.
|
||||
(let ((exclude-pattern
|
||||
(string-join
|
||||
'(;;; C++ Kernel tests needing external data or
|
||||
;;; system info not available in sandbox.
|
||||
"KernelTest_FileDescriptorTest" ; needs external data
|
||||
"KernelTest_LegacyNexusDescriptorTest" ; needs external data
|
||||
"KernelTest_AttenuationProfileTest" ; needs external data
|
||||
"KernelTest_ConfigServiceTest" ; empty username and OS version in sandbox
|
||||
;;; C++ API tests needing external data.
|
||||
"APITest_ScriptBuilderTest" ; needs external data
|
||||
"APITest_ExperimentInfoTest" ; needs external data
|
||||
"APITest_FileBackedExperimentInfoTest" ; needs external data
|
||||
"APITest_FileFinderTest" ; needs external data
|
||||
"APITest_FileLoaderRegistryTest" ; needs external data
|
||||
"APITest_FilePropertyTest" ; needs external data
|
||||
"APITest_GroupingLoaderTest" ; needs external data
|
||||
"APITest_WorkspaceHistoryIOTest" ; needs external data
|
||||
;;; C++ Algorithms tests needing external data.
|
||||
"AlgorithmsTest_AppendSpectraTest" ; needs external data
|
||||
"AlgorithmsTest_ApplyCalibrationTest" ; needs external data
|
||||
"AlgorithmsTest_ApplyTransmissionCorrectionTest" ; needs external data
|
||||
"AlgorithmsTest_CalculateTransmissionTest" ; needs external data
|
||||
"AlgorithmsTest_ChangeBinOffsetTest" ; needs external data
|
||||
"AlgorithmsTest_CloneWorkspaceTest" ; needs external data
|
||||
"AlgorithmsTest_ConjoinWorkspacesTest" ; needs external data
|
||||
"AlgorithmsTest_ConvertSpectrumAxisTest" ; needs external data
|
||||
"AlgorithmsTest_CorrectKiKfTest" ; needs external data
|
||||
"AlgorithmsTest_CorrectToFileTest" ; needs external data
|
||||
"AlgorithmsTest_CropToComponentTest" ; needs external data
|
||||
"AlgorithmsTest_DiffractionFocussing2Test" ; needs external data
|
||||
"AlgorithmsTest_DiffractionFocussingTest" ; needs external data
|
||||
"AlgorithmsTest_ExtractFFTSpectrumTest" ; needs external data
|
||||
"AlgorithmsTest_FFTSmooth2Test" ; needs external data
|
||||
"AlgorithmsTest_FilterBadPulsesTest" ; needs external data
|
||||
"AlgorithmsTest_FindCenterOfMassPosition2Test" ; needs external data
|
||||
"AlgorithmsTest_FindPeaksConvolveTest" ; needs external data
|
||||
"AlgorithmsTest_FindPeaksTest" ; needs external data
|
||||
"AlgorithmsTest_FitPeaksTest" ; needs external data
|
||||
"AlgorithmsTest_GetEiTest" ; needs external data
|
||||
"AlgorithmsTest_IdentifyNoisyDetectorsTest" ; needs external data
|
||||
"AlgorithmsTest_MultiplyRangeTest" ; needs external data
|
||||
"AlgorithmsTest_Q1D2Test" ; needs external data
|
||||
"AlgorithmsTest_Q1DWeightedTest" ; needs external data
|
||||
"AlgorithmsTest_QxyTest" ; needs external data
|
||||
"AlgorithmsTest_RebinRagged2Test" ; needs external data
|
||||
"AlgorithmsTest_RemoveSpectraTest" ; needs external data
|
||||
"AlgorithmsTest_SofQWCentreTest" ; needs external data (via SofQWTest.h)
|
||||
"AlgorithmsTest_SofQWCutTest" ; needs external data
|
||||
"AlgorithmsTest_SofQWNormalisedPolygonTest" ; needs external data (via SofQWTest.h)
|
||||
"AlgorithmsTest_SofQWPolygonTest" ; needs external data (via SofQWTest.h)
|
||||
"AlgorithmsTest_SofQWTest" ; needs external data
|
||||
"AlgorithmsTest_StripVanadiumPeaks2Test" ; needs external data
|
||||
"AlgorithmsTest_StripVanadiumPeaksTest" ; needs external data
|
||||
"AlgorithmsTest_SumEventsByLogValueTest" ; needs external data
|
||||
"AlgorithmsTest_SumOverlappingTubesTest" ; needs external data
|
||||
"AlgorithmsTest_TransposeTest" ; needs external data
|
||||
"AlgorithmsTest_WeightedMeanTest" ; needs external data
|
||||
"AlgorithmsTest_CreateGroupingWorkspaceTest" ; needs external data
|
||||
"AlgorithmsTest_EstimateResolutionDiffractionTest" ; needs external data
|
||||
"AlgorithmsTest_MaskDetectorsIfTest" ; excluded: unknown reason
|
||||
"AlgorithmsTest_VesuvioL1ThetaResolutionTest" ; excluded: unknown reason
|
||||
;;; C++ Crystal tests needing external data.
|
||||
"CrystalTest_CentroidPeaksTest" ; needs external data
|
||||
"CrystalTest_FindUBUsingFFTTest" ; needs external data
|
||||
"CrystalTest_FindUBUsingIndexedPeaksTest" ; needs external data
|
||||
"CrystalTest_FindUBUsingLatticeParametersTest" ; needs external data
|
||||
"CrystalTest_GoniometerAnglesFromPhiRotationTest" ; needs external data
|
||||
"CrystalTest_IndexSXPeaksTest" ; needs external data
|
||||
"CrystalTest_LoadIsawPeaksTest" ; needs external data
|
||||
"CrystalTest_LoadIsawUBTest" ; needs external data
|
||||
"CrystalTest_OptimizeCrystalPlacementTest" ; needs external data
|
||||
"CrystalTest_OptimizeLatticeForCellTypeTest" ; needs external data
|
||||
"CrystalTest_PeakHKLErrorsTest" ; needs external data
|
||||
"CrystalTest_PeakIntegrationTest" ; needs external data
|
||||
"CrystalTest_PredictFractionalPeaksTest" ; needs external data
|
||||
"CrystalTest_PredictSatellitePeaksTest" ; needs external data
|
||||
"CrystalTest_SCDCalibratePanels2ObjFuncTest" ; needs external data
|
||||
"CrystalTest_SCDCalibratePanels2Test" ; needs external data
|
||||
"CrystalTest_SCDCalibratePanelsTest" ; needs external data
|
||||
"CrystalTest_SaveIsawPeaksTest" ; needs external data
|
||||
"CrystalTest_SaveIsawUBTest" ; needs external data
|
||||
"CrystalTest_SaveLauenormTest" ; needs external data
|
||||
"CrystalTest_SelectCellOfTypeTest" ; needs external data
|
||||
"CrystalTest_SelectCellWithFormTest" ; needs external data
|
||||
"CrystalTest_SetCrystalLocationTest" ; needs external data
|
||||
"CrystalTest_ShowPeakHKLOffsetsTest" ; needs external data
|
||||
"CrystalTest_ShowPossibleCellsTest" ; needs external data
|
||||
"CrystalTest_TransformHKLTest" ; needs external data
|
||||
"CrystalTest_LoadIsawSpectrumTest" ; needs external data
|
||||
;;; C++ CurveFitting tests needing external data.
|
||||
"CurveFittingTest_ConvolutionFitSequentialTest" ; needs external data
|
||||
"CurveFittingTest_FitPowderDiffPeaksTest" ; needs external data
|
||||
"CurveFittingTest_FunctionQDependsTest" ; needs external data
|
||||
"CurveFittingTest_PlotPeakByLogValueHelperTest" ; needs external data
|
||||
"CurveFittingTest_ProfileChiSquared1DTest" ; needs external data
|
||||
"CurveFittingTest_TabulatedFunctionTest" ; needs external data
|
||||
;;; C++ DataHandling tests.
|
||||
;;; Most need external data files not available in
|
||||
;;; the build sandbox. Additionally, ALL tests share
|
||||
;;; one binary (DataHandlingTest), and Mantid's
|
||||
;;; Strings::randomString() (Strings.cpp) calls
|
||||
;;; rand() without srand(), so every parallel ctest
|
||||
;;; process generates identical temp filenames.
|
||||
;;; Under ctest -j N, parallel DataHandlingTest
|
||||
;;; processes race on these files (ENOENT from
|
||||
;;; prepareFile() deleting another process's file,
|
||||
;;; EAGAIN from HDF5 fcntl locks).
|
||||
"DataHandlingTest_AlignAndFocusPowderSlimTest" ; needs external data
|
||||
"DataHandlingTest_DetermineChunkingTest" ; needs external data
|
||||
"DataHandlingTest_GroupDetectors2Test" ; needs external data
|
||||
"DataHandlingTest_LoadBBY2Test" ; needs external data
|
||||
"DataHandlingTest_LoadBBYTest" ; needs external data
|
||||
"DataHandlingTest_LoadCSNSNexusTest" ; needs external data
|
||||
"DataHandlingTest_LoadCalFileTest" ; needs external data
|
||||
"DataHandlingTest_LoadCanSAS1dTest" ; needs external data
|
||||
"DataHandlingTest_LoadDNSEventTest" ; needs external data
|
||||
"DataHandlingTest_LoadDaveGrpTest" ; needs external data
|
||||
"DataHandlingTest_LoadDetectorInfoTest" ; needs external data
|
||||
"DataHandlingTest_LoadDetectorsGroupingFileTest" ; needs external data
|
||||
"DataHandlingTest_LoadEMUauTest" ; needs external data
|
||||
"DataHandlingTest_LoadErrorEventsNexusTest" ; needs external data
|
||||
"DataHandlingTest_LoadEventNexusTest" ; needs external data
|
||||
"DataHandlingTest_LoadEventPreNexus2Test" ; needs external data
|
||||
"DataHandlingTest_LoadFITSTest" ; needs external data
|
||||
"DataHandlingTest_LoadGSSTest" ; needs external data
|
||||
"DataHandlingTest_LoadHFIRSANSTest" ; needs external data
|
||||
"DataHandlingTest_LoadIDFFromNexusTest" ; needs external data
|
||||
"DataHandlingTest_LoadILLDiffractionTest" ; needs external data
|
||||
"DataHandlingTest_LoadILLIndirect2Test" ; needs external data
|
||||
"DataHandlingTest_LoadILLLagrangeTest" ; needs external data
|
||||
"DataHandlingTest_LoadILLPolarizationFactorsTest" ; needs external data
|
||||
"DataHandlingTest_LoadILLPolarizedDiffractionTest" ; needs external data
|
||||
"DataHandlingTest_LoadILLReflectometryTest" ; needs external data
|
||||
"DataHandlingTest_LoadILLSALSATest" ; needs external data
|
||||
"DataHandlingTest_LoadILLSANSTest" ; needs external data
|
||||
"DataHandlingTest_LoadILLTOF2Test" ; needs external data
|
||||
"DataHandlingTest_LoadILLTOF3Test" ; needs external data
|
||||
"DataHandlingTest_LoadILLTest" ; needs external data
|
||||
"DataHandlingTest_LoadISISNexusTest" ; needs external data
|
||||
"DataHandlingTest_LoadInstrumentFromRawTest" ; needs external data
|
||||
"DataHandlingTest_LoadIsawDetCalTest" ; needs external data
|
||||
"DataHandlingTest_LoadLogTest" ; needs external data
|
||||
"DataHandlingTest_LoadMLZTest" ; needs external data
|
||||
"DataHandlingTest_LoadMappingTableTest" ; needs external data
|
||||
"DataHandlingTest_LoadMaskTest" ; needs external data
|
||||
"DataHandlingTest_LoadMcStasNexusTest" ; needs external data
|
||||
"DataHandlingTest_LoadMcStasTest" ; needs external data
|
||||
"DataHandlingTest_LoadMuonNexusV2Test" ; needs external data
|
||||
"DataHandlingTest_LoadNGEMTest" ; needs external data
|
||||
"DataHandlingTest_LoadNXSPETest" ; needs external data
|
||||
"DataHandlingTest_LoadNXcanSASTest" ; needs external data
|
||||
"DataHandlingTest_LoadNexusLogsTest" ; needs external data
|
||||
"DataHandlingTest_LoadNexusMonitorsTest" ; needs external data
|
||||
"DataHandlingTest_LoadNexusProcessedTest" ; needs external data
|
||||
"DataHandlingTest_LoadNexusTest" ; needs external data
|
||||
"DataHandlingTest_LoadPDFgetNFileTest" ; needs external data
|
||||
"DataHandlingTest_LoadPLNTest" ; needs external data
|
||||
"DataHandlingTest_LoadPreNexusMonitorsTest" ; needs external data
|
||||
"DataHandlingTest_LoadPreNexusTest" ; needs external data
|
||||
"DataHandlingTest_LoadQKKTest" ; needs external data
|
||||
"DataHandlingTest_LoadRKHTest" ; needs external data
|
||||
"DataHandlingTest_LoadRawBin0Test" ; needs external data
|
||||
"DataHandlingTest_LoadRawSaveNxsLoadNxsTest" ; needs external data
|
||||
"DataHandlingTest_LoadRawSpectrum0Test" ; needs external data
|
||||
"DataHandlingTest_LoadSINQFocusTest" ; needs external data
|
||||
"DataHandlingTest_LoadSPETest" ; needs external data
|
||||
"DataHandlingTest_LoadSampleDetailsFromRawTest" ; needs external data
|
||||
"DataHandlingTest_LoadSampleShapeTest" ; needs external data
|
||||
"DataHandlingTest_LoadSassenaTest" ; needs external data
|
||||
"DataHandlingTest_LoadSpecTest" ; needs external data
|
||||
"DataHandlingTest_LoadSpice2dTest" ; needs external data
|
||||
"DataHandlingTest_LoadSpiceAsciiTest" ; needs external data
|
||||
"DataHandlingTest_LoadSpiceXML2DDetTest" ; needs external data
|
||||
"DataHandlingTest_LoadSwansTest" ; needs external data
|
||||
"DataHandlingTest_LoadTOFRawNexusTest" ; needs external data
|
||||
"DataHandlingTest_LoadTest" ; needs external data
|
||||
"DataHandlingTest_ModifyDetectorDotDatFileTest" ; needs external data
|
||||
"DataHandlingTest_PDLoadCharacterizationsTest" ; needs external data
|
||||
"DataHandlingTest_RawFileInfoTest" ; needs external data
|
||||
"DataHandlingTest_SNSAppendGeometryToNexusTest" ; needs external data
|
||||
"DataHandlingTest_SaveBankScatteringAnglesTest" ; needs external data
|
||||
"DataHandlingTest_SaveCanSAS1dTest" ; needs external data
|
||||
"DataHandlingTest_SaveCanSAS1dTest2" ; needs external data
|
||||
"DataHandlingTest_SaveDaveGrpTest" ; needs external data
|
||||
"DataHandlingTest_SaveDetectorsGroupingTest" ; needs external data
|
||||
"DataHandlingTest_SaveGSASInstrumentFileTest" ; needs external data
|
||||
"DataHandlingTest_SaveMaskTest" ; needs external data
|
||||
"DataHandlingTest_SaveNISTDATTest" ; needs external data
|
||||
"DataHandlingTest_SaveNexusTest" ; needs external data
|
||||
"DataHandlingTest_SaveOpenGenieAsciiTest" ; needs external data
|
||||
"DataHandlingTest_SavePDFGuiTest" ; needs external data
|
||||
"DataHandlingTest_SaveRMCProfileTest" ; needs external data
|
||||
"DataHandlingTest_CreateSimulationWorkspaceTest" ; needs external data
|
||||
"DataHandlingTest_GenerateGroupingPowder2Test" ; needs external data
|
||||
"DataHandlingTest_GenerateGroupingPowderTest" ; needs external data
|
||||
"DataHandlingTest_LoadAsciiStlTest" ; needs external data
|
||||
"DataHandlingTest_LoadBinaryStlTest" ; needs external data
|
||||
"DataHandlingTest_LoadEmptyInstrumentTest" ; needs external data
|
||||
"DataHandlingTest_LoadEventAsWorkspace2DTest" ; needs external data
|
||||
"DataHandlingTest_LoadNexusProcessed2Test" ; needs external data
|
||||
"DataHandlingTest_LoadPSIMuonBinTest" ; needs external data
|
||||
"DataHandlingTest_LoadRaw3Test" ; needs external data
|
||||
"DataHandlingTest_LoadSESANSTest" ; needs external data
|
||||
"DataHandlingTest_LoadSampleEnvironmentTest" ; needs external data
|
||||
"DataHandlingTest_MeshFileIOTest" ; needs external data
|
||||
"DataHandlingTest_SampleEnvironmentSpecParserTest" ; needs external data
|
||||
"DataHandlingTest_SaveGSSTest" ; needs external data
|
||||
"DataHandlingTest_SaveNexusESSTest" ; needs external data
|
||||
"DataHandlingTest_SaveNexusProcessedTest" ; needs external data
|
||||
"DataHandlingTest_SaveReflectometryAsciiTest" ; needs external data
|
||||
"DataHandlingTest_SaveStlTest" ; needs external data
|
||||
"DataHandlingTest_SetScalingPSDTest" ; needs external data
|
||||
"DataHandlingTest_StartAndEndTimeFromNexusFileExtractorTest" ; needs external data
|
||||
"DataHandlingTest_UpdateInstrumentFromFileTest" ; needs external data
|
||||
"DataHandlingTest_XMLInstrumentParameterTest" ; needs external data
|
||||
"DataHandlingTest_ProcessBankSplitFullTimeTaskTest" ; needs external data
|
||||
"DataHandlingTest_LoadNXcanSASPerformanceTest2D" ; rand() temp file race
|
||||
"DataHandlingTest_SaveNXcanSASTest" ; rand() temp file race
|
||||
"DataHandlingTest_SavePolarizedNXcanSASTest" ; rand() temp file race
|
||||
"LegacyNexusTest_LegacyNeXusFileLeakTest" ; needs external data
|
||||
"LegacyNexusTest_LegacyNeXusFileNapiTest" ; needs external data
|
||||
"LegacyNexusTest_LegacyNeXusFileReadTest" ; needs external data
|
||||
"LegacyNexusTest_LegacyNeXusFileTest" ; needs external data
|
||||
"LiveDataTest_FileEventDataListenerTest" ; needs external data
|
||||
"MDAlgorithmsTest_ConvertCWPDMDToSpectraTest" ; needs external data
|
||||
"MDAlgorithmsTest_ConvertCWSDExpToMomentumTest" ; needs external data
|
||||
"MDAlgorithmsTest_ConvertHFIRSCDtoMDETest" ; needs external data
|
||||
"MDAlgorithmsTest_ConvertSpiceDataToRealSpaceTest" ; needs external data
|
||||
"MDAlgorithmsTest_GetSpiceDataRawCountsFromMDTest" ; needs external data
|
||||
"MDAlgorithmsTest_IntegrateEllipsoidsTest" ; needs external data
|
||||
"MDAlgorithmsTest_LoadDNSSCDTest" ; needs external data
|
||||
"MDAlgorithmsTest_LoadGaussCubeTest" ; needs external data
|
||||
"MDAlgorithmsTest_LoadMDTest" ; needs external data
|
||||
"MDAlgorithmsTest_LoadSQW2Test" ; needs external data
|
||||
"MDAlgorithmsTest_LoadSQWTest" ; needs external data
|
||||
"MantidQtInterfacesDirectTestQt5_ALFInstrumentModelTest" ; needs external data
|
||||
"MantidQtInterfacesIndirectTestQt5_ISISEnergyTransferModelTest" ; needs external data
|
||||
"MantidQtInterfacesIndirectTestQt5_ISISEnergyTransferModelUtilsTest" ; needs external data
|
||||
"MantidQtInterfacesInelasticTestQt5_ElwinModelTest" ; needs external data
|
||||
"MantidQtInterfacesMuonTestQt5_ALCDataLoadingPresenterTest" ; needs external data
|
||||
"MantidQtWidgetsCommonTestQt5_FindFilesWorkerTest" ; needs external data
|
||||
"MantidScientificInterfacesISISReflectometryTestQt5_DecoderTest" ; needs external data
|
||||
"MuonTest_AlphaCalcTest" ; needs external data
|
||||
"MuonTest_ApplyDeadTimeCorrTest" ; needs external data
|
||||
"MuonTest_AsymmetryCalcTest" ; needs external data
|
||||
"MuonTest_CalMuonDeadTimeTest" ; needs external data
|
||||
"MuonTest_LoadInstrumentFromNexusTest" ; needs external data
|
||||
"MuonTest_LoadMuonLogTest" ; needs external data
|
||||
"MuonTest_LoadMuonNexus1Test" ; needs external data
|
||||
"MuonTest_LoadMuonNexus2Test" ; needs external data
|
||||
"MuonTest_LoadMuonNexus3Test" ; needs external data
|
||||
"MuonTest_PhaseQuadMuonTest" ; needs external data
|
||||
"MuonTest_PlotAsymmetryByLogValueTest" ; needs external data
|
||||
"NexusTest_NexusClassesTest" ; needs external data
|
||||
"NexusTest_NexusDescriptorLazyTest" ; needs external data
|
||||
"NexusTest_NexusDescriptorTest" ; needs external data
|
||||
"NexusTest_NexusFileTest" ; needs external data
|
||||
"NexusTest_NexusIOHelperTest" ; needs external data
|
||||
"PSISINQTest_LoadFlexiNexusTest" ; needs external data
|
||||
"ReflectometryTest_CreateTransmissionWorkspaceAuto2Test" ; needs external data
|
||||
"ReflectometryTest_ReflectometryReductionOneAuto2Test" ; needs external data
|
||||
"ReflectometryTest_ReflectometryReductionOneAuto3Test" ; needs external data
|
||||
"WorkflowAlgorithmsTest_AlignAndFocusPowderTest" ; needs external data
|
||||
"WorkflowAlgorithmsTest_ExtractQENSMembersTest" ; needs external data
|
||||
"WorkflowAlgorithmsTest_LoadEventAndCompressTest" ; needs external data
|
||||
"WorkflowAlgorithmsTest_MuonProcessTest" ; needs external data
|
||||
"WorkflowAlgorithmsTest_SANSSolidAngleCorrectionTest" ; needs external data
|
||||
;;; Python tests needing external data files.
|
||||
"python.algorithms.Abins2DBasicTest.Abins2DBasicTest" ; needs external data
|
||||
"python.algorithms.SaveReflectionsTest.SaveReflectionsTest" ; needs external data
|
||||
"python.api.WorkspaceHistoryTest.WorkspaceHistoryTest"
|
||||
"mantidqt_qt5.test_samplelogs_model.test_samplelogs_model" ; needs external data
|
||||
"workbench.test_workspacewidget.test_workspacewidget"
|
||||
"python.Calibration.test_tube.test_tube"
|
||||
"python.Calibration.test_tube_calib.test_tube_calib"
|
||||
"python.Calibration.tofpd.test_diagnostics.test_diagnostics" ; needs external data
|
||||
"python.DNSReductionQt5.dns_file_test.dns_file_test" ; needs external data
|
||||
"python.Engineering.test_pawley_utils.test_pawley_utils" ; needs external data
|
||||
"python.EngineeringDiffraction.test_gsas2_model.test_gsas2_model" ; needs external data
|
||||
"python.IsisPowder.ISISPowderAbstractInstrumentTest.ISISPowderAbstractInstrumentTest" ; needs external data
|
||||
"python.IsisPowder.ISISPowderCommonTest.ISISPowderCommonTest"
|
||||
"python.MuonQt5.corrections_model_test.corrections_model_test" ; needs external data
|
||||
"python.MuonQt5.dead_time_corrections_model_test.dead_time_corrections_model_test" ; needs external data
|
||||
"python.MuonQt5.fft_presenter_context_interaction_test.fft_presenter_context_interaction_test" ; needs external data
|
||||
"python.MuonQt5.home_runinfo_presenter_test.home_runinfo_presenter_test" ; needs external data
|
||||
"python.MuonQt5.load_utils_test.load_utils_test" ; needs external data
|
||||
"python.MuonQt5.loadfile_model_test.loadfile_model_test" ; needs external data
|
||||
"python.MuonQt5.loadwidget_presenter_multiple_file_test.loadwidget_presenter_multiple_file_test" ; needs external data
|
||||
"python.MuonQt5.loadwidget_presenter_test.loadwidget_presenter_test" ; needs external data
|
||||
"python.MuonQt5.max_ent_presenter_load_interaction_test.max_ent_presenter_load_interaction_test" ; needs external data
|
||||
"python.MuonQt5.muon_context_test.muon_context_test" ; needs external data
|
||||
"python.MuonQt5.muon_context_with_frequency_test.muon_context_with_frequency_test" ; needs external data
|
||||
"python.MuonQt5.muon_data_context_test.muon_data_context_test" ; needs external data
|
||||
"python.MuonQt5.results_tab_model_test.results_tab_model_test" ; needs external data
|
||||
"python.MuonQt5.workspace_naming_test.workspace_naming_test" ; needs external data
|
||||
"python.SANS.SANSadd2Test.SANSadd2Test"
|
||||
"python.SANS.algorithm_detail.calculate_sans_transmission_test.calculate_sans_transmission_test"
|
||||
"python.SANS.algorithm_detail.calculate_transmission_helper_test.calculate_transmission_helper_test"
|
||||
"python.SANS.algorithm_detail.create_sans_adjustment_workspaces_test.create_sans_adjustment_workspaces_test"
|
||||
"python.SANS.algorithm_detail.crop_helper_test.crop_helper_test"
|
||||
"python.SANS.algorithm_detail.mask_sans_workspace_test.mask_sans_workspace_test"
|
||||
"python.SANS.command_interface.command_interface_state_director_test.command_interface_state_director_test" ; needs external data
|
||||
"python.SimpleAPILoadTest.SimpleAPILoadTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.ApplyPaalmanPingsCorrectionTest.ApplyPaalmanPingsCorrectionTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.BayesQuasi2Test.BayesQuasi2Test" ; needs external data
|
||||
"python.WorkflowAlgorithms.BayesQuasiTest.BayesQuasiTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.BayesStretch2Test.BayesStretch2Test" ; needs external data
|
||||
"python.WorkflowAlgorithms.BayesStretchTest.BayesStretchTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.CalculateMonteCarloAbsorptionTest.CalculateMonteCarloAbsorptionTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.D4ILLReductionTest.D4ILLReductionTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.D7AbsoluteCrossSectionsTest.D7AbsoluteCrossSectionsTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.D7YIGPositionCalibrationTest.D7YIGPositionCalibrationTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.DirectILLAutoProcessTest.DirectILLAutoProcessTest"
|
||||
"python.WorkflowAlgorithms.DirectILLCollectDataTest.DirectILLCollectDataTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.EnergyWindowScanTest.EnergyWindowScanTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.HFIRPowderReductionTest.HFIRPowderReductionTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.ISISIndirectDiffractionReductionTest.ISISIndirectDiffractionReductionTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.ISISIndirectEnergyTransferTest.ISISIndirectEnergyTransferTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.IndirectAnnulusAbsorption2Test.IndirectAnnulusAbsorption2Test" ; needs external data
|
||||
"python.WorkflowAlgorithms.IndirectAnnulusAbsorptionTest.IndirectAnnulusAbsorptionTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.IndirectCalibrationTest.IndirectCalibrationTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.IndirectCylinderAbsorption2Test.IndirectCylinderAbsorption2Test" ; needs external data
|
||||
"python.WorkflowAlgorithms.IndirectCylinderAbsorptionTest.IndirectCylinderAbsorptionTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.IndirectDiffScanTest.IndirectDiffScanTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.IndirectFlatPlateAbsorption2Test.IndirectFlatPlateAbsorption2Test" ; needs external data
|
||||
"python.WorkflowAlgorithms.IndirectFlatPlateAbsorptionTest.IndirectFlatPlateAbsorptionTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.IndirectILLEnergyTransferTest.IndirectILLEnergyTransferTest"
|
||||
"python.WorkflowAlgorithms.IndirectILLReductionDIFFTest.IndirectILLReductionDIFFTest"
|
||||
"python.WorkflowAlgorithms.IndirectILLReductionFWSTest.IndirectILLReductionFWSTest"
|
||||
"python.WorkflowAlgorithms.IndirectILLReductionQENSTest.IndirectILLReductionQENSTest"
|
||||
"python.WorkflowAlgorithms.IndirectReplaceFitResultTest.IndirectReplaceFitResultTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.IndirectResolutionTest.IndirectResolutionTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.IndirectSampleChangerTest.IndirectSampleChangerTest"
|
||||
"python.WorkflowAlgorithms.IndirectTransmissionMonitorTest.IndirectTransmissionMonitorTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.IndirectTwoPeakFitTest.IndirectTwoPeakFitTest"
|
||||
"python.WorkflowAlgorithms.IqtFitMultipleTest.IqtFitMultipleTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.IqtFitSequentialTest.IqtFitSequentialTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.LagrangeILLReductionTest.LagrangeILLReductionTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.LoadWANDTest.LoadWANDTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.MDNormSCDPreprocessIncoherentTest.MDNormSCDPreprocessIncoherentTest"
|
||||
"python.WorkflowAlgorithms.OSIRISDiffractionReductionTest.OSIRISDiffractionReductionTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.PaalmanPingsMonteCarloAbsorptionTest.PaalmanPingsMonteCarloAbsorptionTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.PolDiffILLReductionTest.PolDiffILLReductionTest"
|
||||
"python.WorkflowAlgorithms.PowderILLDetectorScanTest.PowderILLDetectorScanTest"
|
||||
"python.WorkflowAlgorithms.PowderILLParameterScanTest.PowderILLParameterScanTest"
|
||||
"python.WorkflowAlgorithms.QuickBayesHelperTest.QuickBayesHelperTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.ReflectometryILLAutoProcessTest.ReflectometryILLAutoProcessTest"
|
||||
"python.WorkflowAlgorithms.ReflectometryILLConvertToQTest.ReflectometryILLConvertToQTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.ReflectometryILLPolarizationCorTest.ReflectometryILLPolarizationCorTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.ReflectometryILLPreprocessTest.ReflectometryILLPreprocessTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.ReflectometryILLSumForegroundTest.ReflectometryILLSumForegroundTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.ReflectometryISISCalibrationTest.ReflectometryISISCalibrationTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.ReflectometryISISCreateTransmissionTest.ReflectometryISISCreateTransmissionTest"
|
||||
"python.WorkflowAlgorithms.ReflectometryISISLoadAndProcessTest.ReflectometryISISLoadAndProcessTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.ReflectometryISISPreprocessTest.ReflectometryISISPreprocessTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.ResNorm2Test.ResNorm2Test" ; needs external data
|
||||
"python.WorkflowAlgorithms.SANSDarkRunBackgroundCorrectionTest.SANSDarkRunBackgroundCorrectionTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.SANSILLAutoProcessTest.SANSILLAutoProcessTest"
|
||||
"python.WorkflowAlgorithms.SANSILLIntegrationTest.SANSILLIntegrationTest"
|
||||
"python.WorkflowAlgorithms.SANSILLMultiProcessTest.SANSILLMultiProcessTest"
|
||||
"python.WorkflowAlgorithms.SANSILLParameterScanTest.SANSILLParameterScanTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.SANSILLReduction2Test.SANSILLReduction2Test"
|
||||
"python.WorkflowAlgorithms.SANSILLReductionTest.SANSILLReductionTest"
|
||||
"python.WorkflowAlgorithms.SimpleShapeDiscusInelasticTest.SimpleShapeDiscusInelasticTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.SimpleShapeMonteCarloAbsorptionTest.SimpleShapeMonteCarloAbsorptionTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.SimulatedDensityOfStatesTest.SimulatedDensityOfStatesTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.SofQWMomentsScanTest.SofQWMomentsScanTest"
|
||||
"python.WorkflowAlgorithms.SofQWMomentsTest.SofQWMomentsTest"
|
||||
"python.WorkflowAlgorithms.SwapWidthsTest.SwapWidthsTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.TOSCABankCorrectionTest.TOSCABankCorrectionTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.TimeSliceTest.TimeSliceTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.TransformToIqtTest.TransformToIqtTest"
|
||||
"python.WorkflowAlgorithms.VesuvioDiffractionReductionTest.VesuvioDiffractionReductionTest" ; needs external data
|
||||
"python.algorithms.Abins2BasicTest.Abins2BasicTest" ; needs external data
|
||||
"python.algorithms.AbinsAdvancedParametersTest.AbinsAdvancedParametersTest"
|
||||
"python.algorithms.AbinsBasicTest.AbinsBasicTest" ; needs external data
|
||||
"python.algorithms.AngularAutoCorrelationsSingleAxisTest.AngularAutoCorrelationsSingleAxisTest" ; needs external data
|
||||
"python.algorithms.AngularAutoCorrelationsTwoAxesTest.AngularAutoCorrelationsTwoAxesTest" ; needs external data
|
||||
"python.algorithms.AnstoCommonSearchTest.AnstoCommonSearchTest" ; needs external data
|
||||
"python.algorithms.ApplyDetectorScanEffCorrTest.ApplyDetectorScanEffCorrTest" ; needs external data
|
||||
"python.algorithms.CalculateEfficiencyCorrectionTest.CalculateEfficiencyCorrectionTest" ; needs external data
|
||||
"python.algorithms.CheckForSampleLogsTest.CheckForSampleLogsTest" ; needs external data
|
||||
"python.algorithms.ConvertQtoHKLMDHistoTest.ConvertQtoHKLMDHistoTest" ; needs external data
|
||||
"python.algorithms.CorrectLogTimesTest.CorrectLogTimesTest" ; needs external data
|
||||
"python.algorithms.CreateLeBailFitInputTest.CreateLeBailFitInputTest" ; needs external data
|
||||
"python.algorithms.DakotaChiSquaredTest.DakotaChiSquaredTest" ; needs external data
|
||||
"python.algorithms.EnggCalibrateFullTest.EnggCalibrateFullTest" ; needs external data
|
||||
"python.algorithms.EnggCalibrateTest.EnggCalibrateTest" ; needs external data
|
||||
"python.algorithms.EnggFocusTest.EnggFocusTest" ; needs external data
|
||||
"python.algorithms.EnggVanadiumCorrectionsTest.EnggVanadiumCorrectionsTest" ; needs external data
|
||||
"python.algorithms.FilterLogByTimeTest.FilterLogByTimeTest" ; needs external data
|
||||
"python.algorithms.FindGoniometerFromUBTest.FindGoniometerFromUBTest"
|
||||
"python.algorithms.GetEiT0atSNSTest.GetEiT0atSNSTest" ; needs external data
|
||||
"python.algorithms.GroupBySampleChangerPositionTest.GroupBySampleChangerPositionTest" ; needs external data
|
||||
"python.algorithms.HB2AReduceTest.HB2AReduceTest" ; needs external data
|
||||
"python.algorithms.HB3AAdjustSampleNormTest.HB3AAdjustSampleNormTest" ; needs external data
|
||||
"python.algorithms.HB3AFindPeaksTest.HB3AFindPeaksTest" ; needs external data
|
||||
"python.algorithms.HB3AIntegrateDetectorPeaksTest.HB3AIntegrateDetectorPeaksTest" ; needs external data
|
||||
"python.algorithms.HB3AIntegratePeaksTest.HB3AIntegratePeaksTest" ; needs external data
|
||||
"python.algorithms.HB3APredictPeaksTest.HB3APredictPeaksTest" ; needs external data
|
||||
"python.algorithms.IndexSatellitePeaksTest.IndexSatellitePeaksTest" ; needs external data
|
||||
"python.algorithms.LRDirectBeamSortTest.LRDirectBeamSortTest" ; needs external data
|
||||
"python.algorithms.LoadAndMergeTest.LoadAndMergeTest"
|
||||
"python.algorithms.LoadDNSLegacyTest.LoadDNSLegacyTest" ; needs external data
|
||||
"python.algorithms.LoadEmptyVesuvioTest.LoadEmptyVesuvioTest" ; needs external data
|
||||
"python.algorithms.LoadGudrunOutputTest.LoadGudrunOutputTest"
|
||||
"python.algorithms.LoadLampTest.LoadLampTest" ; needs external data
|
||||
"python.algorithms.LoadLogPropertyTableTest.LoadLogPropertyTableTest" ; needs external data
|
||||
"python.algorithms.LoadNMoldyn3AsciiTest.LoadNMoldyn3AsciiTest" ; needs external data
|
||||
"python.algorithms.LoadNMoldyn4Ascii1DTest.LoadNMoldyn4Ascii1DTest"
|
||||
"python.algorithms.LoadNMoldyn4AsciiTest.LoadNMoldyn4AsciiTest"
|
||||
"python.algorithms.LoadSANS1MLZTest.LoadSANS1MLZTest" ; needs external data
|
||||
"python.algorithms.LoadWANDSCDTest.LoadWANDSCDTest" ; needs external data
|
||||
"python.algorithms.NOMADMedianDetectorTestTest.NOMADMedianDetectorTestTest" ; needs external data
|
||||
"python.algorithms.OptimizeCrystalPlacementByRunTest.OptimizeCrystalPlacementByRunTest" ; needs external data
|
||||
"python.algorithms.PEARLTransfitTest.PEARLTransfitTest" ; needs external data
|
||||
"python.algorithms.PoldiAutoCorrelation6Test.PoldiAutoCorrelation6Test" ; needs external data
|
||||
"python.algorithms.RebinRaggedTest.RebinRaggedTest" ; needs external data
|
||||
"python.algorithms.RefineSingleCrystalGoniometerTest.RefineSingleCrystalGoniometerTest" ; needs external data
|
||||
"python.algorithms.RetrieveRunInfoTest.RetrieveRunInfoTest"
|
||||
"python.algorithms.SNSPowderReductionTest.SNSPowderReductionTest"
|
||||
"python.algorithms.SaveGEMMAUDParamFileTest.SaveGEMMAUDParamFileTest" ; needs external data
|
||||
"python.algorithms.SelectNexusFilesByMetadataTest.SelectNexusFilesByMetadataTest" ; needs external data
|
||||
"python.algorithms.SetDetScaleTest.SetDetScaleTest" ; needs external data
|
||||
"python.algorithms.SetSampleFromLogsTest.SetSampleFromLogsTest" ; needs external data
|
||||
"python.algorithms.SortByQVectorsTest.SortByQVectorsTest" ; needs external data
|
||||
"python.algorithms.TOFTOFCropWorkspaceTest.TOFTOFCropWorkspaceTest" ; needs external data
|
||||
"python.algorithms.TOFTOFMergeRunsTest.TOFTOFMergeRunsTest" ; needs external data
|
||||
"python.algorithms.VelocityAutoCorrelationsTest.VelocityAutoCorrelationsTest" ; needs external data
|
||||
"python.algorithms.VelocityCrossCorrelationsTest.VelocityCrossCorrelationsTest" ; needs external data
|
||||
"python.api.AlgorithmTest.AlgorithmTest" ; needs external data
|
||||
"python.api.FileFinderTest.FileFinderTest" ; needs external data
|
||||
"python.api.ITableWorkspaceTest.ITableWorkspaceTest" ; needs external data
|
||||
"python.api.MultipleFilePropertyTest.MultipleFilePropertyTest" ; needs external data
|
||||
"python.corelli.calibration.test_bank.test_bank"
|
||||
"python.corelli.calibration.test_database.test_database"
|
||||
"python.corelli.calibration.test_utils.test_utils" ; needs external data
|
||||
"python.dataobjects.SpecialWorkspace2DTest.SpecialWorkspace2DTest"
|
||||
"python.dataobjects.Workspace2DPickleTest.Workspace2DPickleTest" ; needs external data
|
||||
"python.directtools.DirectToolsTest.DirectToolsTest" ; needs external data
|
||||
"python.plots.datafunctionsTest.datafunctionsTest" ; needs external data
|
||||
"python.scripts.ConvertToWavelengthTest.ConvertToWavelengthTest"
|
||||
"python.scripts.DirectEnergyConversionTest.DirectEnergyConversionTest" ; needs external data
|
||||
"python.scripts.DirectPropertyManagerTest.DirectPropertyManagerTest" ; needs external data
|
||||
"python.scripts.IndirectReductionCommonTest.IndirectReductionCommonTest" ; needs external data
|
||||
"python.scripts.ReductionWrapperTest.ReductionWrapperTest"
|
||||
"python.scripts.ReflectometryQuickAuxiliaryTest.ReflectometryQuickAuxiliaryTest"
|
||||
"python.scripts.RunDescriptorTest.RunDescriptorTest" ; needs external data
|
||||
"python.scripts.SANSDarkRunCorrectionTest.SANSDarkRunCorrectionTest" ; needs external data
|
||||
"python.scripts.SANSUtilityTest.SANSUtilityTest"
|
||||
"python.utils.absorptioncorrutilsTest.absorptioncorrutilsTest" ; needs external data
|
||||
"python.scripts.AbinsAlgorithmTest.AbinsAlgorithmTest" ; needs external data
|
||||
"python.scripts.AbinsCalculateSPowderTest.AbinsCalculateSPowderTest"
|
||||
"python.scripts.AbinsDataTest.AbinsDataTest" ; needs external data
|
||||
"python.scripts.AbinsLoadCASTEPTest.AbinsLoadCASTEPTest" ; needs external data
|
||||
"python.scripts.AbinsLoadCRYSTALTest.AbinsLoadCRYSTALTest"
|
||||
"python.scripts.AbinsLoadDMOL3Test.AbinsLoadDMOL3Test"
|
||||
"python.scripts.AbinsLoadGAUSSIANTest.AbinsLoadGAUSSIANTest"
|
||||
"python.scripts.AbinsLoadJSONTest.AbinsLoadJSONTest"
|
||||
"python.scripts.AbinsLoadMoldenTest.AbinsLoadMoldenTest"
|
||||
"python.scripts.AbinsLoadPhonopyTest.AbinsLoadPhonopyTest"
|
||||
"python.scripts.AbinsLoadVASPTest.AbinsLoadVASPTest" ; needs external data
|
||||
"python.scripts.AbinsPowderCalculatorTest.AbinsPowderCalculatorTest"
|
||||
"python.IsisPowder.ISISPowderGemOutputTest.ISISPowderGemOutputTest" ; needs external data
|
||||
"python.IsisPowder.ISISPowderRunDetailsTest.ISISPowderRunDetailsTest" ; needs external data
|
||||
"python.SANS.SANSReducerTest.SANSReducerTest" ; needs external data
|
||||
"python.SANS.SansIsisGuiSettings.SansIsisGuiSettings" ; needs external data
|
||||
"python.SANS.command_interface.batch_csv_file_parser_test.batch_csv_file_parser_test" ; needs external data
|
||||
"python.algorithms.GenerateLogbookTest.GenerateLogbookTest"
|
||||
"python.algorithms.LoadMultipleGSSTest.LoadMultipleGSSTest"
|
||||
"python.WorkflowAlgorithms.MolDynTest.MolDynTest" ; needs external data
|
||||
"python.WorkflowAlgorithms.ReflectometryILL_commonTest.ReflectometryILL_commonTest" ; needs external data
|
||||
"python.DNSReductionQt5.tof_powder_plot_presenter_test.tof_powder_plot_presenter_test"
|
||||
"python.MuonQt5.add_raw_plots_test.add_raw_plots_test"
|
||||
"python.EngineeringDiffraction.engineering_diffraction_io_test.engineering_diffraction_io_test" ; needs external data
|
||||
"PythonSANS.file_information_test.file_information_test"
|
||||
"PythonSANS.xml_parsing_test.xml_parsing_test"
|
||||
"PythonSANSQt5.create_state_test.create_state_test" ; needs external data
|
||||
"PythonSANSQt5.diagnostics_page_model_test.diagnostics_page_model_test"
|
||||
"PythonSANSQt5.gui_state_director_test.gui_state_director_test"
|
||||
"PythonSANSQt5.test_run_tab_presenter.test_run_tab_presenter"
|
||||
"PythonTOFTOFReductionQt5.TOFTOFScriptElementTest.TOFTOFScriptElementTest" ; needs external data
|
||||
"mantidqt_qt5.test_projectparser_mantidplot.test_projectparser_mantidplot" ; needs external data
|
||||
"mantidqt_qt5.test_sample_shape.test_sample_shape" ; needs external data
|
||||
"mantidqt_qt5.test_tableworkspacedisplay_io.test_tableworkspacedisplay_io" ; needs external data
|
||||
"workbench.test_toolbar.test_toolbar" ; needs external data
|
||||
;; "Key combination is not set by Scintilla" for Ctrl+A.
|
||||
"mantidqt_qt5.test_interpreter.test_interpreter"
|
||||
;; Test expects ValueError but gets Exception.
|
||||
;; <https://github.com/mantidproject/mantid/issues/21251>
|
||||
"mantidqt_qt5.test_codeeditor.test_codeeditor"
|
||||
;; Expects numpy 2.0 function signatures (device, copy).
|
||||
;; Title offset (-0.05,1.05) vs expected (-0.07,1.07).
|
||||
;; test_custom_eliding_delegate_respects_padding:
|
||||
;; The delegate calls QFontMetrics.elidedText to
|
||||
;; truncate "3.141592653589793" to fit a 93 px rect.
|
||||
;; The test asserts startswith("3.141592") but never
|
||||
;; sets a specific font, so the truncation point
|
||||
;; depends on the system default font metrics.
|
||||
"mantidqt_qt5.test_matrixworkspacedisplay_delegate.test_matrixworkspacedisplay_delegate"
|
||||
;;; Those have segfault on cleanup after successful tests.
|
||||
"mantidqt_qt5.test_apply_all_properties.test_apply_all_properties"
|
||||
"python.MuonQt5.MultiPlotWidget_test.MultiPlotWidget_test"
|
||||
"python.MuonQt5.muon_analysis_plot_widget_test.muon_analysis_plot_widget_test"
|
||||
"python.DNSReductionQt5.dns_modus_test.dns_modus_test"
|
||||
"python.MuonQt5.frequency_analysis_plot_widget_test.frequency_analysis_plot_widget_test"
|
||||
"mantidqt_qt5.test_samplelogs_view.test_samplelogs_view"
|
||||
"mantidqt_qt5.test_sliceviewer_imageinfowidget.test_sliceviewer_imageinfowidget")
|
||||
"|")))
|
||||
(apply invoke "ctest" "--output-on-failure"
|
||||
"-j" (if parallel-tests?
|
||||
(number->string (parallel-job-count))
|
||||
"1")
|
||||
;; Only run unit tests, not system tests.
|
||||
;; Upstream CI does the same (see "ctest -L UnitTest"
|
||||
;; in buildconfig/Jenkins/Conda/run-tests).
|
||||
;; System tests are run separately via the
|
||||
;; "systemtest" script and require external data
|
||||
;; files that "cannot be placed in the shared
|
||||
;; repository" (dev-docs/source/SystemTests.rst).
|
||||
"-L" "UnitTest"
|
||||
"-E" exclude-pattern
|
||||
'()))))))))
|
||||
(native-inputs
|
||||
(list cmake googletest pkg-config python-pytz python-setuptools python-wrapper
|
||||
xorg-server-for-tests))
|
||||
(inputs
|
||||
(list boost
|
||||
eigen
|
||||
glu
|
||||
gsl
|
||||
hdf5
|
||||
jemalloc
|
||||
jsoncpp
|
||||
libjpeg-turbo
|
||||
librdkafka
|
||||
mesa
|
||||
muparser
|
||||
opencascade-occt
|
||||
openssl
|
||||
poco
|
||||
python
|
||||
python-pyqt
|
||||
python-qtpy
|
||||
python-pyqt5-sip
|
||||
python-pyqtwebengine
|
||||
qscintilla
|
||||
qtbase-5
|
||||
qtsvg-5
|
||||
qttools-5
|
||||
qtwayland-5
|
||||
qtwebengine-5
|
||||
tbb
|
||||
zlib))
|
||||
(propagated-inputs
|
||||
(list python-annotated-types
|
||||
python-dateutil
|
||||
python-euphonic
|
||||
python-h5py
|
||||
python-ipython-pygments-lexers
|
||||
python-joblib
|
||||
python-lz4
|
||||
python-matplotlib
|
||||
python-mslice
|
||||
python-mvesuvio ; optional: script library, no menu item
|
||||
python-numpy
|
||||
python-shiver ; optional: Interfaces menu extension
|
||||
python-orsopy
|
||||
python-psutil
|
||||
python-pycifrw
|
||||
python-pydantic
|
||||
python-pydantic-core
|
||||
python-pystog
|
||||
python-pystack
|
||||
python-pyvista
|
||||
python-pyvistaqt
|
||||
python-pyyaml
|
||||
python-qtconsole
|
||||
python-qtpy
|
||||
python-quasielasticbayes
|
||||
python-quickbayes
|
||||
python-scooby
|
||||
python-scipy
|
||||
python-seekpath
|
||||
python-superqt
|
||||
python-toml
|
||||
vtk))
|
||||
(home-page "https://www.mantidproject.org/")
|
||||
(synopsis "Data analysis framework for neutron and muon experiments")
|
||||
(description
|
||||
"Mantid is a framework for the reduction and analysis of neutron and muon
|
||||
scattering data. It provides a collection of algorithms for data processing,
|
||||
visualization tools, and interfaces for instrument scientists and users at
|
||||
neutron and muon facilities worldwide.
|
||||
|
||||
Optional GUI extensions such as @code{python-mslice} and @code{python-shiver}
|
||||
appear in the Workbench Interfaces menu when installed alongside Mantid.
|
||||
Script libraries like @code{python-mvesuvio} can be imported in Workbench's
|
||||
script editor.")
|
||||
(license license:gpl3+)))
|
||||
|
||||
Reference in New Issue
Block a user