mirror of
https://git.savannah.gnu.org/git/guix.git
synced 2026-05-02 07:15:53 +02:00
gnu: packages/python-science: Sort packages.
* gnu/packages/python-science.scm: (python-climin, python-fastcluster, python-libneuroml, python-nibabel, python-opt-einsum, python-pynetdicom, python-ruffus, python-simple-pid): Sort variables alphabetically. Change-Id: Ic2696630a49868c5a657dea3a3be353fd50d7a88
This commit is contained in:
Sharlatan Hellseher
+232
-232
@@ -455,6 +455,27 @@ numerical solver for convex optimization problems using a novel homogeneous
|
||||
embedding.")
|
||||
(license license:asl2.0)))
|
||||
|
||||
(define-public python-climin
|
||||
(package
|
||||
(name "python-climin")
|
||||
(version "0.1a1")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "climin" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1wpjisd5zzi5yvjff02hnxn84822k8sdxvvd33lil2x79wdb36rv"))))
|
||||
(build-system python-build-system)
|
||||
(native-inputs (list python-nose))
|
||||
(propagated-inputs (list python-numpydoc python-numpy python-scipy))
|
||||
(home-page "https://github.com/BRML/climin")
|
||||
(synopsis "Optimization for machine learning")
|
||||
(description
|
||||
"@command{climin} is a Python package for optimization,
|
||||
heavily biased to machine learning scenarios. It works on top of
|
||||
@command{numpy} and (partially) @command{gnumpy}.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-cmocean
|
||||
(package
|
||||
(name "python-cmocean")
|
||||
@@ -665,6 +686,26 @@ that is 7-15x faster than @code{numpy.histogram}, and a 2D histogram function
|
||||
that is 20-25x faster than @code{numpy.histogram2d}.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-fastcluster
|
||||
(package
|
||||
(name "python-fastcluster")
|
||||
(version "1.2.6")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "fastcluster" version))
|
||||
(sha256
|
||||
(base32 "19labbgnq85p4r4jbli2p045lgh57larhi2g2anagfxnlzpqdf5a"))))
|
||||
(build-system pyproject-build-system)
|
||||
(propagated-inputs (list python-numpy))
|
||||
(native-inputs (list python-scipy python-setuptools python-wheel))
|
||||
(home-page "https://danifold.net/fastcluster.html")
|
||||
(synopsis "Fast hierarchical clustering routines for R and Python")
|
||||
(description "The fastcluster package implements seven common hierarchical
|
||||
clustering schemes efficiently. The package is made with two interfaces to
|
||||
standard software: R and Python.")
|
||||
(license license:bsd-2)))
|
||||
|
||||
(define-public python-formulaic
|
||||
(package
|
||||
(name "python-formulaic")
|
||||
@@ -828,6 +869,38 @@ Features:
|
||||
@end itemize")
|
||||
(license license:bsd-2)))
|
||||
|
||||
(define-public python-libneuroml
|
||||
(package
|
||||
(name "python-libneuroml")
|
||||
(version "0.6.5")
|
||||
(source (origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/NeuralEnsemble/libNeuroML.git")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32
|
||||
"04cfff9phm19x87p86xrkhd6wlpxvdwk3rf1c3qgyncfchws0sjh"))))
|
||||
(build-system pyproject-build-system)
|
||||
(native-inputs
|
||||
(list python-pytest
|
||||
python-numpy
|
||||
python-setuptools
|
||||
python-tables
|
||||
python-wheel))
|
||||
(propagated-inputs
|
||||
(list python-lxml
|
||||
python-natsort
|
||||
python-networkx))
|
||||
(home-page "https://libneuroml.readthedocs.org/en/latest/")
|
||||
(synopsis
|
||||
"Python library for working with NeuroML descriptions of neuronal models")
|
||||
(description
|
||||
"This package provides a Python library for working with NeuroML descriptions of
|
||||
neuronal models")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-meshzoo
|
||||
(package
|
||||
(name "python-meshzoo")
|
||||
@@ -910,6 +983,39 @@ density maps, both for interactive and non-interactive use.")
|
||||
indices of @code{ndarrays}.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-nibabel
|
||||
(package
|
||||
(name "python-nibabel")
|
||||
(version "5.3.2")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "nibabel" version))
|
||||
(sha256
|
||||
(base32 "16snprwgp7qzp51j3mx0zdn7brvx6r14ankldi24ny0w7d8adp0b"))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
(list
|
||||
;; AttributeError: 'dict' object has no attribute 'add'.
|
||||
#:test-flags #~(list "-k" "not test_first and not test_second")))
|
||||
(propagated-inputs (list python-importlib-resources python-numpy
|
||||
python-packaging python-typing-extensions))
|
||||
(native-inputs (list python-hatch-vcs
|
||||
python-hatchling
|
||||
python-pytest
|
||||
python-pytest-httpserver
|
||||
python-pytest-xdist))
|
||||
(home-page "https://nipy.org/nibabel/")
|
||||
(synopsis "Read and write access to common neuroimaging file formats")
|
||||
(description
|
||||
"@code{nibabel} is a library that provides read and write access to
|
||||
common neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2
|
||||
and later), GIFTI, NIfTI1, NIfTI2, CIFTI-2, MINC1, MINC2, AFNI BRIK/HEAD,
|
||||
ECAT and Philips PAR/REC. In addition, NiBabel also supports FreeSurfer’s
|
||||
MGH, geometry, annotation and morphometry files, and provides some limited
|
||||
support for DICOM.")
|
||||
(license license:expat))) ; and other non-copyleft licenses
|
||||
|
||||
(define-public python-numdifftools
|
||||
(package
|
||||
(name "python-numdifftools")
|
||||
@@ -1017,6 +1123,32 @@ evaluating arrays of polynomials based on @code{numpy.ndarray objects}.")
|
||||
aggregated sum and more.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-opt-einsum
|
||||
(package
|
||||
(name "python-opt-einsum")
|
||||
(version "3.3.0")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "opt_einsum" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0jb5lia0q742d1713jk33vlj41y61sf52j6pgk7pvhxvfxglgxjr"))))
|
||||
(build-system pyproject-build-system)
|
||||
(propagated-inputs (list python-numpy))
|
||||
(native-inputs
|
||||
(list python-pytest python-pytest-cov python-setuptools python-wheel))
|
||||
(home-page "https://github.com/dgasmith/opt_einsum")
|
||||
(synopsis "Optimizing numpys einsum function")
|
||||
(description
|
||||
"Optimized einsum can significantly reduce the overall execution time of
|
||||
einsum-like expressions by optimizing the expression's contraction order and
|
||||
dispatching many operations to canonical BLAS, cuBLAS, or other specialized
|
||||
routines. Optimized einsum is agnostic to the backend and can handle NumPy,
|
||||
Dask, PyTorch, Tensorflow, CuPy, Sparse, Theano, JAX, and Autograd arrays as
|
||||
well as potentially any library which conforms to a standard API. See the
|
||||
documentation for more information.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-osqp
|
||||
(package
|
||||
(name "python-osqp")
|
||||
@@ -1144,6 +1276,56 @@ allows arithmetic operations between them and conversions from and to
|
||||
different units.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-pynetdicom
|
||||
(package
|
||||
(name "python-pynetdicom")
|
||||
(version "2.1.1")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "pynetdicom" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1smzrnc93nmv8jz4np9knas74a46b1nhb3hjpf8n9vfpxypgnwcn"))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
(list
|
||||
#:test-flags
|
||||
;; Tests takes about 10-15min to complete.
|
||||
;; Skip tests that require networking.
|
||||
#~(list "-k" (string-append
|
||||
" not TestFindSCP"
|
||||
" and not TestQRGetServiceClass"
|
||||
" and not TestQRMoveServiceClass"
|
||||
" and not TestStoreSCP"
|
||||
" and not test_ae.py"
|
||||
" and not test_echoscp.py"
|
||||
" and not test_qrscp_echo.py"
|
||||
" and not test_storescp.py"
|
||||
" and not test_pr_level_patient"
|
||||
" and not test_pr_level_series"
|
||||
" and not test_scp_cancelled"))))
|
||||
(native-inputs (list python-codespell
|
||||
python-coverage
|
||||
python-poetry-core
|
||||
python-pytest
|
||||
python-pytest-cov
|
||||
python-pytest-xdist
|
||||
python-sphinx
|
||||
python-sphinx-rtd-theme))
|
||||
(propagated-inputs (list python-mypy
|
||||
python-numpydoc
|
||||
python-pydicom
|
||||
python-pyfakefs
|
||||
python-sqlalchemy))
|
||||
(home-page "https://github.com/pydicom/pynetdicom")
|
||||
(synopsis "Python implementation of the DICOM networking protocol")
|
||||
(description
|
||||
"@code{pynetdicom} is a Python package that implements the DICOM
|
||||
networking protocol. It allows the easy creation of DICOM
|
||||
@acronym{SCUs,Service Class Users} and @acronym{SCPs,Service Class
|
||||
Providers}.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-pyzx
|
||||
(package
|
||||
(name "python-pyzx")
|
||||
@@ -1219,6 +1401,37 @@ or as a TikZ file for use in LaTeX documents;
|
||||
factorization routine for quasi-definite linear system.")
|
||||
(license license:asl2.0)))
|
||||
|
||||
(define-public python-ruffus
|
||||
(package
|
||||
(name "python-ruffus")
|
||||
(version "2.8.4")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "ruffus" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1ai673k1s94s8b6pyxai8mk17p6zvvyi87rl236fs6ls8mpdklvc"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
`(#:phases
|
||||
(modify-phases %standard-phases
|
||||
(delete 'check)
|
||||
(add-after 'install 'check
|
||||
(lambda* (#:key tests? inputs outputs #:allow-other-keys)
|
||||
(when tests?
|
||||
(add-installed-pythonpath inputs outputs)
|
||||
(with-directory-excursion "ruffus/test"
|
||||
(invoke "bash" "run_all_unit_tests3.cmd"))))))))
|
||||
(native-inputs
|
||||
(list python-pytest))
|
||||
(home-page "http://www.ruffus.org.uk")
|
||||
(synopsis "Light-weight computational pipeline management")
|
||||
(description
|
||||
"Ruffus is designed to allow scientific and other analyses to be
|
||||
automated with the minimum of fuss and the least effort.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-scikit-allel
|
||||
(package
|
||||
(name "python-scikit-allel")
|
||||
@@ -1746,6 +1959,25 @@ the SciPy stack. It provides many user-friendly and efficient numerical
|
||||
routines such as routines for numerical integration and optimization.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-simple-pid
|
||||
(package
|
||||
(name "python-simple-pid")
|
||||
(version "2.0.1")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "simple_pid" version))
|
||||
(sha256
|
||||
(base32
|
||||
"17p9bgka5yv5lbnbk374yjccrlizm572wv3xb479072lahf7cwap"))))
|
||||
(build-system pyproject-build-system)
|
||||
(native-inputs
|
||||
(list python-pytest python-setuptools python-wheel))
|
||||
(home-page "https://github.com/m-lundberg/simple-pid")
|
||||
(synopsis "Easy to use PID controller")
|
||||
(description "This package provides a simple and easy-to-use @acronym{PID,
|
||||
proportional-integral-derivative} controller.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-snakemake-interface-common
|
||||
(package
|
||||
(name "python-snakemake-interface-common")
|
||||
@@ -2212,39 +2444,6 @@ interpolation of 1D data (for example, time series) with splines.")
|
||||
Evapotranspiration using various standard methods.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-nibabel
|
||||
(package
|
||||
(name "python-nibabel")
|
||||
(version "5.3.2")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "nibabel" version))
|
||||
(sha256
|
||||
(base32 "16snprwgp7qzp51j3mx0zdn7brvx6r14ankldi24ny0w7d8adp0b"))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
(list
|
||||
;; AttributeError: 'dict' object has no attribute 'add'.
|
||||
#:test-flags #~(list "-k" "not test_first and not test_second")))
|
||||
(propagated-inputs (list python-importlib-resources python-numpy
|
||||
python-packaging python-typing-extensions))
|
||||
(native-inputs (list python-hatch-vcs
|
||||
python-hatchling
|
||||
python-pytest
|
||||
python-pytest-httpserver
|
||||
python-pytest-xdist))
|
||||
(home-page "https://nipy.org/nibabel/")
|
||||
(synopsis "Read and write access to common neuroimaging file formats")
|
||||
(description
|
||||
"@code{nibabel} is a library that provides read and write access to
|
||||
common neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2
|
||||
and later), GIFTI, NIfTI1, NIfTI2, CIFTI-2, MINC1, MINC2, AFNI BRIK/HEAD,
|
||||
ECAT and Philips PAR/REC. In addition, NiBabel also supports FreeSurfer’s
|
||||
MGH, geometry, annotation and morphometry files, and provides some limited
|
||||
support for DICOM.")
|
||||
(license license:expat))) ; and other non-copyleft licenses
|
||||
|
||||
(define-public python-tspex
|
||||
(package
|
||||
(name "python-tspex")
|
||||
@@ -2960,26 +3159,6 @@ changed, it made sense to abstract away the nuisance of having to re-learn
|
||||
them.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-fastcluster
|
||||
(package
|
||||
(name "python-fastcluster")
|
||||
(version "1.2.6")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "fastcluster" version))
|
||||
(sha256
|
||||
(base32 "19labbgnq85p4r4jbli2p045lgh57larhi2g2anagfxnlzpqdf5a"))))
|
||||
(build-system pyproject-build-system)
|
||||
(propagated-inputs (list python-numpy))
|
||||
(native-inputs (list python-scipy python-setuptools python-wheel))
|
||||
(home-page "https://danifold.net/fastcluster.html")
|
||||
(synopsis "Fast hierarchical clustering routines for R and Python")
|
||||
(description "The fastcluster package implements seven common hierarchical
|
||||
clustering schemes efficiently. The package is made with two interfaces to
|
||||
standard software: R and Python.")
|
||||
(license license:bsd-2)))
|
||||
|
||||
(define-public python-fbpca
|
||||
(package
|
||||
(name "python-fbpca")
|
||||
@@ -3381,37 +3560,6 @@ by numpy using the highly efficient @code{msgpack} format. Serialization of
|
||||
Python's native complex data types is also supported.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-ruffus
|
||||
(package
|
||||
(name "python-ruffus")
|
||||
(version "2.8.4")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "ruffus" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1ai673k1s94s8b6pyxai8mk17p6zvvyi87rl236fs6ls8mpdklvc"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
`(#:phases
|
||||
(modify-phases %standard-phases
|
||||
(delete 'check)
|
||||
(add-after 'install 'check
|
||||
(lambda* (#:key tests? inputs outputs #:allow-other-keys)
|
||||
(when tests?
|
||||
(add-installed-pythonpath inputs outputs)
|
||||
(with-directory-excursion "ruffus/test"
|
||||
(invoke "bash" "run_all_unit_tests3.cmd"))))))))
|
||||
(native-inputs
|
||||
(list python-pytest))
|
||||
(home-page "http://www.ruffus.org.uk")
|
||||
(synopsis "Light-weight computational pipeline management")
|
||||
(description
|
||||
"Ruffus is designed to allow scientific and other analyses to be
|
||||
automated with the minimum of fuss and the least effort.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-scs
|
||||
(package
|
||||
(name "python-scs")
|
||||
@@ -4321,27 +4469,6 @@ visual integration of spatially referenced datasets.")
|
||||
to do spectral analysis in Python.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-climin
|
||||
(package
|
||||
(name "python-climin")
|
||||
(version "0.1a1")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "climin" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1wpjisd5zzi5yvjff02hnxn84822k8sdxvvd33lil2x79wdb36rv"))))
|
||||
(build-system python-build-system)
|
||||
(native-inputs (list python-nose))
|
||||
(propagated-inputs (list python-numpydoc python-numpy python-scipy))
|
||||
(home-page "https://github.com/BRML/climin")
|
||||
(synopsis "Optimization for machine learning")
|
||||
(description
|
||||
"@command{climin} is a Python package for optimization,
|
||||
heavily biased to machine learning scenarios. It works on top of
|
||||
@command{numpy} and (partially) @command{gnumpy}.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-paramz
|
||||
(package
|
||||
(name "python-paramz")
|
||||
@@ -4562,25 +4689,6 @@ of use as pickling or @code{numpy.save}, but with the language
|
||||
interoperability offered by HDF5.")
|
||||
(license license:bsd-3))))
|
||||
|
||||
(define-public python-simple-pid
|
||||
(package
|
||||
(name "python-simple-pid")
|
||||
(version "2.0.1")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "simple_pid" version))
|
||||
(sha256
|
||||
(base32
|
||||
"17p9bgka5yv5lbnbk374yjccrlizm572wv3xb479072lahf7cwap"))))
|
||||
(build-system pyproject-build-system)
|
||||
(native-inputs
|
||||
(list python-pytest python-setuptools python-wheel))
|
||||
(home-page "https://github.com/m-lundberg/simple-pid")
|
||||
(synopsis "Easy to use PID controller")
|
||||
(description "This package provides a simple and easy-to-use @acronym{PID,
|
||||
proportional-integral-derivative} controller.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-supersmoother
|
||||
(package
|
||||
(name "python-supersmoother")
|
||||
@@ -4611,32 +4719,6 @@ Friedman's SuperSmoother} based in Python. It makes use of numpy for fast
|
||||
numerical computation.")
|
||||
(license license:bsd-2)))
|
||||
|
||||
(define-public python-opt-einsum
|
||||
(package
|
||||
(name "python-opt-einsum")
|
||||
(version "3.3.0")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "opt_einsum" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0jb5lia0q742d1713jk33vlj41y61sf52j6pgk7pvhxvfxglgxjr"))))
|
||||
(build-system pyproject-build-system)
|
||||
(propagated-inputs (list python-numpy))
|
||||
(native-inputs
|
||||
(list python-pytest python-pytest-cov python-setuptools python-wheel))
|
||||
(home-page "https://github.com/dgasmith/opt_einsum")
|
||||
(synopsis "Optimizing numpys einsum function")
|
||||
(description
|
||||
"Optimized einsum can significantly reduce the overall execution time of
|
||||
einsum-like expressions by optimizing the expression's contraction order and
|
||||
dispatching many operations to canonical BLAS, cuBLAS, or other specialized
|
||||
routines. Optimized einsum is agnostic to the backend and can handle NumPy,
|
||||
Dask, PyTorch, Tensorflow, CuPy, Sparse, Theano, JAX, and Autograd arrays as
|
||||
well as potentially any library which conforms to a standard API. See the
|
||||
documentation for more information.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-vaex-core
|
||||
(package
|
||||
(name "python-vaex-core")
|
||||
@@ -4755,56 +4837,6 @@ fractional factorial methods.")
|
||||
NeuroML2 models.")
|
||||
(license license:lgpl3)))
|
||||
|
||||
(define-public python-pynetdicom
|
||||
(package
|
||||
(name "python-pynetdicom")
|
||||
(version "2.1.1")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "pynetdicom" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1smzrnc93nmv8jz4np9knas74a46b1nhb3hjpf8n9vfpxypgnwcn"))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
(list
|
||||
#:test-flags
|
||||
;; Tests takes about 10-15min to complete.
|
||||
;; Skip tests that require networking.
|
||||
#~(list "-k" (string-append
|
||||
" not TestFindSCP"
|
||||
" and not TestQRGetServiceClass"
|
||||
" and not TestQRMoveServiceClass"
|
||||
" and not TestStoreSCP"
|
||||
" and not test_ae.py"
|
||||
" and not test_echoscp.py"
|
||||
" and not test_qrscp_echo.py"
|
||||
" and not test_storescp.py"
|
||||
" and not test_pr_level_patient"
|
||||
" and not test_pr_level_series"
|
||||
" and not test_scp_cancelled"))))
|
||||
(native-inputs (list python-codespell
|
||||
python-coverage
|
||||
python-poetry-core
|
||||
python-pytest
|
||||
python-pytest-cov
|
||||
python-pytest-xdist
|
||||
python-sphinx
|
||||
python-sphinx-rtd-theme))
|
||||
(propagated-inputs (list python-mypy
|
||||
python-numpydoc
|
||||
python-pydicom
|
||||
python-pyfakefs
|
||||
python-sqlalchemy))
|
||||
(home-page "https://github.com/pydicom/pynetdicom")
|
||||
(synopsis "Python implementation of the DICOM networking protocol")
|
||||
(description
|
||||
"@code{pynetdicom} is a Python package that implements the DICOM
|
||||
networking protocol. It allows the easy creation of DICOM
|
||||
@acronym{SCUs,Service Class Users} and @acronym{SCPs,Service Class
|
||||
Providers}.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-pynrrd
|
||||
(package
|
||||
(name "python-pynrrd")
|
||||
@@ -4911,38 +4943,6 @@ and PySide6. It is intended for use in mathematics, scientific or engineering
|
||||
applications.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-libneuroml
|
||||
(package
|
||||
(name "python-libneuroml")
|
||||
(version "0.6.5")
|
||||
(source (origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/NeuralEnsemble/libNeuroML.git")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32
|
||||
"04cfff9phm19x87p86xrkhd6wlpxvdwk3rf1c3qgyncfchws0sjh"))))
|
||||
(build-system pyproject-build-system)
|
||||
(native-inputs
|
||||
(list python-pytest
|
||||
python-numpy
|
||||
python-setuptools
|
||||
python-tables
|
||||
python-wheel))
|
||||
(propagated-inputs
|
||||
(list python-lxml
|
||||
python-natsort
|
||||
python-networkx))
|
||||
(home-page "https://libneuroml.readthedocs.org/en/latest/")
|
||||
(synopsis
|
||||
"Python library for working with NeuroML descriptions of neuronal models")
|
||||
(description
|
||||
"This package provides a Python library for working with NeuroML descriptions of
|
||||
neuronal models")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public snakemake
|
||||
(package
|
||||
(name "snakemake")
|
||||
|
||||
Reference in New Issue
Block a user