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gnu: r-barcodetrackr: Replace custom phase with SKIPPED-TESTS argument.

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* gnu/packages/bioconductor.scm (r-barcodetrackr)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: Ibe719fb6a2395c31c67788255d7df95988962b4c
This commit is contained in:
Ricardo Wurmus
2026-04-02 11:48:43 +02:00
parent f91b2f45fb
commit 32519d5453
1 changed files with 16 additions and 31 deletions
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47
gnu/packages/bioconductor.scm
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@@ -6026,37 +6026,22 @@ estimates for each correlation element.")
;; Bioconductor 3.23.
(arguments
(list
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'disable-bad-tests
(lambda _
(with-directory-excursion "tests/testthat"
(substitute* "test-clonal-bias-functions.R"
((".*bias_(histogram|ridge_plot|lineplot) works.*" m)
(string-append m "skip('guix')\n")))
(substitute* "test-clonal-diversity-functions.R"
((".*rank_abundance works.*" m)
(string-append m "skip('guix')\n"))
((".*clonal_diversity works.*" m)
(string-append m "skip('guix')\n"))
((".*clonal_count works.*" m)
(string-append m "skip('guix')\n"))
((".*mds_plot works.*" m)
(string-append m "skip('guix')\n")))
(substitute* "test-clonal-pattern-functions.R"
((".*barcode_ggheatmap works.*" m)
(string-append m "skip('guix')\n"))
((".*barcode_ggheatmap_stat works.*" m)
(string-append m "skip('guix')\n"))
((".*barcode_binary_heatmap works.*" m)
(string-append m "skip('guix')\n"))
((".*clonal_contribution works.*" m)
(string-append m "skip('guix')\n")))
(substitute* "test-shared-clonality-functions.R"
((".*scatter_plot works.*" m)
(string-append m "skip('guix')\n"))
((".*cor_plot works.*" m)
(string-append m "skip('guix')\n")))))))))
#:skipped-tests
'(("test-clonal-bias-functions.R"
"bias_(histogram|ridge_plot|lineplot) works")
("test-clonal-diversity-functions.R"
"clonal_count works"
"clonal_diversity works"
"mds_plot works"
"rank_abundance works")
("test-clonal-pattern-functions.R"
"barcode_binary_heatmap works"
"barcode_ggheatmap works"
"barcode_ggheatmap_stat works"
"clonal_contribution works")
("test-shared-clonality-functions.R"
"cor_plot works"
"scatter_plot works"))))
(propagated-inputs
(list r-circlize
r-cowplot