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gnu: python-pyspoa: Switch to pyproject.

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* gnu/packages/bioinformatics.scm (python-pyspoa):
[build-system]: Switch to pyproject-build-system.
[arguments]: Improve style.
<#:phases>: Migrate phase 'check to <#:test-backend, #:test-flags>.
[native-inputs]: Add python-setuptools.

Change-Id: Ib38a5779d6b73050126c377f6b0c5d5a53ef25aa
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
This commit is contained in:
Nicolas Graves
2026-01-07 00:05:22 +01:00
committed by Rutherther
parent 4347565cb8
commit 4b6427549c
1 changed files with 19 additions and 25 deletions
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gnu/packages/bioinformatics.scm
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@@ -24294,34 +24294,28 @@ browser.")
(uri (git-reference
(url "https://github.com/nanoporetech/pyspoa")
(commit (string-append "v" version))
(recursive? #true)))
(recursive? #t)))
(file-name (git-file-name name version))
(sha256
(base32
"1lgf2shzhxkcsircd6vy46h27pjljd5q95fyz1cm3lkk702qbnzx"))))
(build-system python-build-system)
(base32 "1lgf2shzhxkcsircd6vy46h27pjljd5q95fyz1cm3lkk702qbnzx"))))
(build-system pyproject-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-before 'build 'build-libspoa
(lambda _
(mkdir-p "src/build")
(with-directory-excursion "src/build"
(invoke "cmake"
"-Dspoa_optimize_for_portability=ON"
"-DCMAKE_BUILD_TYPE=Release"
"-DCMAKE_CXX_FLAGS=\"-I ../vendor/cereal/include/\" -fPIC"
"..")
(invoke "make"))))
(replace 'check
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
(when tests?
(add-installed-pythonpath inputs outputs)
(invoke "python" "tests/test_pyspoa.py")))))))
(propagated-inputs
(list pybind11))
(native-inputs
`(("cmake" ,cmake-minimal)))
(list
#:test-backend #~'custom
#:test-flags #~(list "tests/test_pyspoa.py")
#:phases
#~(modify-phases %standard-phases
(add-before 'build 'build-libspoa
(lambda _
(mkdir-p "src/build")
(with-directory-excursion "src/build"
(invoke "cmake" "-Dspoa_optimize_for_portability=ON"
"-DCMAKE_BUILD_TYPE=Release"
"-DCMAKE_CXX_FLAGS=\"-I ../vendor/cereal/include/\" -fPIC"
"..")
(invoke "make")))))))
(propagated-inputs (list pybind11))
(native-inputs (list cmake-minimal python-setuptools))
(home-page "https://github.com/nanoporetech/pyspoa")
(synopsis "Python bindings for the SIMD partial order alignment library")
(description