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gnu: r-mosdef: Replace custom phase with SKIPPED-TESTS argument.

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* gnu/packages/bioconductor.scm (r-mosdef)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: Iadf53cbebf8e30b1cd8a4a793a7853b01318de39
This commit is contained in:
Ricardo Wurmus
2026-04-04 10:43:29 +02:00
parent 945de29c83
commit 514aafe814
1 changed files with 4 additions and 9 deletions
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13
gnu/packages/bioconductor.scm
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@@ -11646,15 +11646,10 @@ location information (and the reverse operation) is implemented as well.")
(build-system r-build-system)
(arguments
(list
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'disable-bad-tests
(lambda _
;; Genome length information unavailable.
(with-directory-excursion "tests/testthat"
(substitute* "test-check_inputs.R"
((".*res_de and de_container are related.*" m)
(string-append m "skip('guix')\n")))))))))
#:skipped-tests
'(("test-check_inputs.R"
;; Genome length information unavailable.
"res_de and de_container are related"))))
(propagated-inputs (list r-annotationdbi
r-clusterprofiler
r-deseq2